Psyllid ID: psy11896
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | 2.2.26 [Sep-21-2011] | |||||||
| B4Q5D5 | 745 | Elongation factor G, mito | N/A | N/A | 0.647 | 0.906 | 0.714 | 0.0 | |
| B4HY41 | 745 | Elongation factor G, mito | N/A | N/A | 0.647 | 0.906 | 0.714 | 0.0 | |
| Q9VM33 | 745 | Elongation factor G, mito | yes | N/A | 0.647 | 0.906 | 0.714 | 0.0 | |
| B4NZM7 | 745 | Elongation factor G, mito | N/A | N/A | 0.647 | 0.906 | 0.711 | 0.0 | |
| B3N6A5 | 745 | Elongation factor G, mito | N/A | N/A | 0.629 | 0.881 | 0.731 | 0.0 | |
| B4KKD5 | 747 | Elongation factor G, mito | N/A | N/A | 0.629 | 0.879 | 0.726 | 0.0 | |
| B4MZW9 | 745 | Elongation factor G, mito | N/A | N/A | 0.629 | 0.881 | 0.729 | 0.0 | |
| B4LS49 | 747 | Elongation factor G, mito | N/A | N/A | 0.629 | 0.879 | 0.726 | 0.0 | |
| B3MK91 | 745 | Elongation factor G, mito | N/A | N/A | 0.639 | 0.895 | 0.713 | 0.0 | |
| B4JQM7 | 747 | Elongation factor G, mito | N/A | N/A | 0.629 | 0.879 | 0.713 | 0.0 |
| >sp|B4Q5D5|EFGM_DROSI Elongation factor G, mitochondrial OS=Drosophila simulans GN=ico PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R L G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNNTLRLRALESLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila simulans (taxid: 7240) |
| >sp|B4HY41|EFGM_DROSE Elongation factor G, mitochondrial OS=Drosophila sechellia GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R L G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNNTLRLRALESLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila sechellia (taxid: 7238) |
| >sp|Q9VM33|EFGM_DROME Elongation factor G, mitochondrial OS=Drosophila melanogaster GN=ico PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R L G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNNTLRLRALKSLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity). Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila melanogaster (taxid: 7227) |
| >sp|B4NZM7|EFGM_DROYA Elongation factor G, mitochondrial OS=Drosophila yakuba GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R + G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNITLRRRAMESLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPTQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LA+HGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLASHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila yakuba (taxid: 7245) |
| >sp|B3N6A5|EFGM_DROER Elongation factor G, mitochondrial OS=Drosophila erecta GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/659 (73%), Positives = 574/659 (87%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 27 YSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 86
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 87 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 146
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 147 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESN 206
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLE
Sbjct: 207 CKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLE 266
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N
Sbjct: 267 EKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIE 326
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ GQ+ +K+VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 327 KEGQDPEKIVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 386
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVS
Sbjct: 387 VRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVS 446
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 447 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREY 506
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DE
Sbjct: 507 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLPPTQNTLLEFVDE 566
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 567 TVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 626
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 627 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila erecta (taxid: 7220) |
| >sp|B4KKD5|EFGM_DROMO Elongation factor G, mitochondrial OS=Drosophila mojavensis GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/659 (72%), Positives = 573/659 (86%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 29 YSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 88
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYT+WKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 89 SMELERQRGITIQSAATYTVWKDVNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 148
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNAAF+Q+PIG+ +
Sbjct: 149 VQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKLNHNAAFIQLPIGVENN 208
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q +AIYFEG G NLR++EIP D++ E++ +RQELIEH++ DE LGE+FLE
Sbjct: 209 CKGIVDLVQERAIYFEGEHGINLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLE 268
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAV+DYLPNPGEV N A
Sbjct: 269 EKPFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVVDYLPNPGEVENLAYIE 328
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ GQE +++VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ IYN R KK
Sbjct: 329 QEGQEKQQIVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGALRKGDNIYNARNHKK 388
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVS
Sbjct: 389 VRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNNMSMESIFVPEPVVS 448
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 449 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFKFDNDIKETLVSGMGELHLEIYAQRMEREY 508
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPPS NT LEF+DE
Sbjct: 509 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPSQNTLLEFVDE 568
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++MCE+G LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 569 TVGTNVPKQFVPGVEKGYREMCERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 628
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 AVKEVFQNGAWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila mojavensis (taxid: 7230) |
| >sp|B4MZW9|EFGM_DROWI Elongation factor G, mitochondrial OS=Drosophila willistoni GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/659 (72%), Positives = 571/659 (86%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 27 YSSHAKFSEHKPIEKIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 86
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 87 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 146
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 147 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESN 206
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE GE+FLE
Sbjct: 207 CKGIVDLVQEKAIYFEGDHGMDIRLDEIPQDMRAESGERRQELIEHLSNADEKFGELFLE 266
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK+A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N A
Sbjct: 267 EKPFTEKDIKEALRRTCIQRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLAFIE 326
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
G+E +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 327 HEGKEPEKVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 386
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N +++ESI+V +PVVS
Sbjct: 387 VRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNHLAMESIFVPEPVVS 446
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 447 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFHFDNDVKETLVSGMGELHLEIYAQRMEREY 506
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPPS NT LEF+DE
Sbjct: 507 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLPPSQNTLLEFVDE 566
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++M E+G LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 567 TVGTNVPKQFIPGVEKGYREMAERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 626
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 627 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila willistoni (taxid: 7260) |
| >sp|B4LS49|EFGM_DROVI Elongation factor G, mitochondrial OS=Drosophila virilis GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/659 (72%), Positives = 574/659 (87%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 29 YSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 88
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 89 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 148
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 149 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKLNHNAAFIQLPIGVESN 208
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q +AIYFEG G +LR++EIP D++ E++ +RQELIEH++ DE LGE+FLE
Sbjct: 209 CKGIVDLVQERAIYFEGEHGMDLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLE 268
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDA++DYLPNPGEV N A
Sbjct: 269 EKPFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAIIDYLPNPGEVENLAYIE 328
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ G+E ++VVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 329 QEGKEKQQVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 388
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N +++ESI+V +PVVS
Sbjct: 389 VRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNHMAMESIFVPEPVVS 448
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF++D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 449 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFYFDNDVKETLVSGMGELHLEIYAQRMEREY 508
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DE
Sbjct: 509 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGLMEPLPPNQNTLLEFVDE 568
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KGF++M E+G LSG +++GVR L+DG +H+VDS+E++F+LAAHG
Sbjct: 569 TVGTNVPKQFVPGVEKGFREMSERGMLSGHKLSGVRFRLQDGGHHIVDSSELAFMLAAHG 628
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila virilis (taxid: 7244) |
| >sp|B3MK91|EFGM_DROAN Elongation factor G, mitochondrial OS=Drosophila ananassae GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/671 (71%), Positives = 578/671 (86%), Gaps = 4/671 (0%)
Query: 174 RISEMHETSR--WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231
R+ M SR + S+ +EH+PI+ IRNIGISAHIDSGKTTLTERILFYTGRI EMHE
Sbjct: 15 RLRAMETMSRAGYSSHAKYAEHRPIDKIRNIGISAHIDSGKTTLTERILFYTGRIVEMHE 74
Query: 232 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVL 291
VRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVL
Sbjct: 75 VRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVL 134
Query: 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
DGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNA
Sbjct: 135 DGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKMNHNA 194
Query: 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411
AF+Q+PIG+ S KGI+DL++ +AIYFEG G NLR++EIP D++ E++ +RQELIEH++
Sbjct: 195 AFIQLPIGVESNCKGIVDLVRERAIYFEGEHGMNLRLDEIPQDMRVESQERRQELIEHLS 254
Query: 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
D+ GE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVL+YLP
Sbjct: 255 NADDTFGELFLEEKPFTEDDIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVLEYLP 314
Query: 472 NPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRK 529
NPGEV N A + GQ+ +K+VLNP+RDGK F+ LAFKLEAG+FGQLTY+RCYQG LRK
Sbjct: 315 NPGEVENLAFVEKEGQDPEKIVLNPARDGKDAFVGLAFKLEAGRFGQLTYLRCYQGVLRK 374
Query: 530 GEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSIS 589
G+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N+++
Sbjct: 375 GDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLA 434
Query: 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649
+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELH
Sbjct: 435 MESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELH 494
Query: 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP 709
LEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLP
Sbjct: 495 LEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLP 554
Query: 710 PSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769
P+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VD
Sbjct: 555 PNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVD 614
Query: 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829
S+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG
Sbjct: 615 SSELAFMLAAHGAIKEVFQNGNWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEG 674
Query: 830 KDDWVTIYAEM 840
+ W T+YAE+
Sbjct: 675 TEGWFTVYAEV 685
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila ananassae (taxid: 7217) |
| >sp|B4JQM7|EFGM_DROGR Elongation factor G, mitochondrial OS=Drosophila grimshawi GN=ico PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/659 (71%), Positives = 575/659 (87%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ +EHK IE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 29 YSSHAKYAEHKSIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 88
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYT+WKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 89 SMELERQRGITIQSAATYTMWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 148
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++P RV++Q+R K+ HNAAF+Q+PIG+ S
Sbjct: 149 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPNRVLSQLRSKMNHNAAFIQLPIGVESH 208
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KG++DL+Q +A+YFEG G +LR++EIP +++ E++ +RQELIEH++ DE GE+FLE
Sbjct: 209 CKGLVDLVQERAVYFEGENGADLRLDEIPQEMRVESQERRQELIEHLSNADETFGELFLE 268
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IE 482
EK +E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDA++DYLPNPGEV N A IE
Sbjct: 269 EKPFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAIIDYLPNPGEVENLAYIE 328
Query: 483 N-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ G+E +++VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 329 HEGKEKQQIVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 388
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++++ESI+V +PVVS
Sbjct: 389 VRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNNMAMESIFVPEPVVS 448
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF++D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 449 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFYFDNDVKETLVSGMGELHLEIYAQRMEREY 508
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FD+LHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DE
Sbjct: 509 GCPVTLGKPKVAFRETLVGPCEFDFLHKKQSGGSGQYARIIGLMEPLPPNQNTLLEFVDE 568
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++MCE+G LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 569 TVGTNVPKQFVPGVEKGYREMCERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 628
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Essential during development as it acts as a retrograde signal from mitochondria to the nucleus to slow down cell proliferation if mitochondrial energy output is low. Drosophila grimshawi (taxid: 7222) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | ||||||
| 91082253 | 751 | PREDICTED: similar to CG4567 CG4567-PA [ | 0.623 | 0.865 | 0.754 | 0.0 | |
| 270008325 | 735 | hypothetical protein TcasGA2_TC030724 [T | 0.623 | 0.884 | 0.754 | 0.0 | |
| 24582462 | 745 | iconoclast [Drosophila melanogaster] gi| | 0.647 | 0.906 | 0.714 | 0.0 | |
| 195338873 | 745 | GM13604 [Drosophila sechellia] gi|195577 | 0.647 | 0.906 | 0.714 | 0.0 | |
| 195471547 | 745 | GE18370 [Drosophila yakuba] gi|261263152 | 0.647 | 0.906 | 0.711 | 0.0 | |
| 194862808 | 745 | GG23544 [Drosophila erecta] gi|261263145 | 0.629 | 0.881 | 0.731 | 0.0 | |
| 195117378 | 747 | GI17797 [Drosophila mojavensis] gi|26126 | 0.629 | 0.879 | 0.726 | 0.0 | |
| 195437986 | 745 | GK24732 [Drosophila willistoni] gi|26126 | 0.629 | 0.881 | 0.729 | 0.0 | |
| 195387800 | 747 | GJ17621 [Drosophila virilis] gi|26126315 | 0.629 | 0.879 | 0.726 | 0.0 | |
| 194762222 | 745 | GF14034 [Drosophila ananassae] gi|261263 | 0.639 | 0.895 | 0.713 | 0.0 |
| >gi|91082253|ref|XP_973026.1| PREDICTED: similar to CG4567 CG4567-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/652 (75%), Positives = 564/652 (86%), Gaps = 2/652 (0%)
Query: 191 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQ 250
+EHKPIE IRNIGISAHIDSGKTTLTERIL+YTGRI MHEV+GKDNVGA MDSMELERQ
Sbjct: 39 AEHKPIEKIRNIGISAHIDSGKTTLTERILYYTGRIETMHEVKGKDNVGATMDSMELERQ 98
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ+LT
Sbjct: 99 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQSLT 158
Query: 311 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDL 370
VNRQMKRY+VPC+AFINKLDR+GADP RV+ QMR K+ HNAAF+Q+PIGL + KG+IDL
Sbjct: 159 VNRQMKRYNVPCLAFINKLDRMGADPNRVLTQMRSKMNHNAAFIQLPIGLEGDCKGVIDL 218
Query: 371 IQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISED 430
IQRKA+YFEG GD +RI+EIP D++ E+E +R ELIEHV+ DE+LGEM+LEE+ I+E+
Sbjct: 219 IQRKALYFEGNFGDQIRIDEIPKDMRSESEERRHELIEHVSNVDEVLGEMYLEERPITEN 278
Query: 431 DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI--ENGQEDK 488
DIK AIRRS L R FTPVLVGTALKNKGVQ LLDAVL+YLPNPGEV+NYA+ + G E +
Sbjct: 279 DIKGAIRRSCLKRSFTPVLVGTALKNKGVQPLLDAVLEYLPNPGEVSNYALREKEGSEPE 338
Query: 489 KVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 548
KV+LNP R+ FIALAFKLEAGKFGQLTYMRCYQG L+KG+ IYN RT +KVRV+RLV
Sbjct: 339 KVLLNPDRNNDKGFIALAFKLEAGKFGQLTYMRCYQGMLKKGDSIYNARTQRKVRVARLV 398
Query: 549 RLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVN 608
RLHSN MEDV EV AGDIFALFGVDCASGDTFV D +SLESI+V +PVVSMSI VN
Sbjct: 399 RLHSNNMEDVNEVYAGDIFALFGVDCASGDTFVIDHKMGLSLESIFVPEPVVSMSINPVN 458
Query: 609 NKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLG 668
NKDRDNFSKAV RFTKEDPTFHFF+D ++KET+VSGMGELHLEIYAQRMEREYNCPVVLG
Sbjct: 459 NKDRDNFSKAVARFTKEDPTFHFFFDNDNKETIVSGMGELHLEIYAQRMEREYNCPVVLG 518
Query: 669 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVP 728
KPKVAF+ETLV P FDYLHKKQSGG GQY RV G LEPLPP NT LEF+DETVGTNVP
Sbjct: 519 KPKVAFRETLVSPCTFDYLHKKQSGGQGQYARVTGVLEPLPPHKNTLLEFVDETVGTNVP 578
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
K F+P + +GF M EKG L G +++G++ L+DG +H+VDS+E++F LAA GA+K+ +E
Sbjct: 579 KQFIPGVRRGFLTMAEKGLLCGQKLSGLKFRLQDGAHHIVDSSELAFFLAAQGAIKEVFE 638
Query: 789 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
GVWQ+LEPIMSVEI+ P EFQG+++ + KRHGI+ G EGKD W T+YAE+
Sbjct: 639 NGVWQVLEPIMSVEITAPDEFQGNIMTQLNKRHGIVTGTEGKDGWFTLYAEV 690
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008325|gb|EFA04773.1| hypothetical protein TcasGA2_TC030724 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/652 (75%), Positives = 564/652 (86%), Gaps = 2/652 (0%)
Query: 191 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQ 250
+EHKPIE IRNIGISAHIDSGKTTLTERIL+YTGRI MHEV+GKDNVGA MDSMELERQ
Sbjct: 23 AEHKPIEKIRNIGISAHIDSGKTTLTERILYYTGRIETMHEVKGKDNVGATMDSMELERQ 82
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ+LT
Sbjct: 83 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQSLT 142
Query: 311 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDL 370
VNRQMKRY+VPC+AFINKLDR+GADP RV+ QMR K+ HNAAF+Q+PIGL + KG+IDL
Sbjct: 143 VNRQMKRYNVPCLAFINKLDRMGADPNRVLTQMRSKMNHNAAFIQLPIGLEGDCKGVIDL 202
Query: 371 IQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISED 430
IQRKA+YFEG GD +RI+EIP D++ E+E +R ELIEHV+ DE+LGEM+LEE+ I+E+
Sbjct: 203 IQRKALYFEGNFGDQIRIDEIPKDMRSESEERRHELIEHVSNVDEVLGEMYLEERPITEN 262
Query: 431 DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI--ENGQEDK 488
DIK AIRRS L R FTPVLVGTALKNKGVQ LLDAVL+YLPNPGEV+NYA+ + G E +
Sbjct: 263 DIKGAIRRSCLKRSFTPVLVGTALKNKGVQPLLDAVLEYLPNPGEVSNYALREKEGSEPE 322
Query: 489 KVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 548
KV+LNP R+ FIALAFKLEAGKFGQLTYMRCYQG L+KG+ IYN RT +KVRV+RLV
Sbjct: 323 KVLLNPDRNNDKGFIALAFKLEAGKFGQLTYMRCYQGMLKKGDSIYNARTQRKVRVARLV 382
Query: 549 RLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVN 608
RLHSN MEDV EV AGDIFALFGVDCASGDTFV D +SLESI+V +PVVSMSI VN
Sbjct: 383 RLHSNNMEDVNEVYAGDIFALFGVDCASGDTFVIDHKMGLSLESIFVPEPVVSMSINPVN 442
Query: 609 NKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLG 668
NKDRDNFSKAV RFTKEDPTFHFF+D ++KET+VSGMGELHLEIYAQRMEREYNCPVVLG
Sbjct: 443 NKDRDNFSKAVARFTKEDPTFHFFFDNDNKETIVSGMGELHLEIYAQRMEREYNCPVVLG 502
Query: 669 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVP 728
KPKVAF+ETLV P FDYLHKKQSGG GQY RV G LEPLPP NT LEF+DETVGTNVP
Sbjct: 503 KPKVAFRETLVSPCTFDYLHKKQSGGQGQYARVTGVLEPLPPHKNTLLEFVDETVGTNVP 562
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
K F+P + +GF M EKG L G +++G++ L+DG +H+VDS+E++F LAA GA+K+ +E
Sbjct: 563 KQFIPGVRRGFLTMAEKGLLCGQKLSGLKFRLQDGAHHIVDSSELAFFLAAQGAIKEVFE 622
Query: 789 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
GVWQ+LEPIMSVEI+ P EFQG+++ + KRHGI+ G EGKD W T+YAE+
Sbjct: 623 NGVWQVLEPIMSVEITAPDEFQGNIMTQLNKRHGIVTGTEGKDGWFTLYAEV 674
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24582462|ref|NP_609105.1| iconoclast [Drosophila melanogaster] gi|27923774|sp|Q9VM33.2|EFGM_DROME RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; Short=dEF-G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|22945851|gb|AAF52495.2| iconoclast [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R L G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNNTLRLRALKSLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195338873|ref|XP_002036048.1| GM13604 [Drosophila sechellia] gi|195577245|ref|XP_002078483.1| GD22506 [Drosophila simulans] gi|261263148|sp|B4HY41.1|EFGM_DROSE RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|261263149|sp|B4Q5D5.1|EFGM_DROSI RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|194129928|gb|EDW51971.1| GM13604 [Drosophila sechellia] gi|194190492|gb|EDX04068.1| GD22506 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R L G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNNTLRLRALESLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195471547|ref|XP_002088064.1| GE18370 [Drosophila yakuba] gi|261263152|sp|B4NZM7.1|EFGM_DROYA RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|194174165|gb|EDW87776.1| GE18370 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/684 (71%), Positives = 583/684 (85%), Gaps = 9/684 (1%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
+G TL R + G+ + + S+ SEHKPIE IRNIGISAHIDSGKTTLTER
Sbjct: 9 TGNITLRRRAMESLGK-------AGYSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTER 61
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278
ILFYTGRI+EMHEVRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHV
Sbjct: 62 ILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHV 121
Query: 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 338
DFTVEVERALRVLDGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYR
Sbjct: 122 DFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYR 181
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 398
V++QMR K+ HNAAF+Q+PIG+ S KGI+DL++ KAIYFEG G ++R++EIP D++ E
Sbjct: 182 VLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVE 241
Query: 399 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG 458
+ +RQELIEH++ DE LGE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKG
Sbjct: 242 SLERRQELIEHLSNADETLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKG 301
Query: 459 VQTLLDAVLDYLPNPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ 516
VQ LLDAVLDYLPNPGEV N + GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQ
Sbjct: 302 VQPLLDAVLDYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQ 361
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS 576
LTY+RCYQG LRKG+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCAS
Sbjct: 362 LTYLRCYQGVLRKGDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCAS 421
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636
GDTF T+ N++S+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D +
Sbjct: 422 GDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDND 481
Query: 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSG 696
KETLVSGMGELHLEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSG
Sbjct: 482 VKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSG 541
Query: 697 QYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756
QY R+IG +EPLPP+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+
Sbjct: 542 QYARIIGVMEPLPPTQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGI 601
Query: 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816
R L+DG +H+VDS+E++F+LA+HGA+K+ ++ G WQILEPIM VE++ P EFQG+V+
Sbjct: 602 RFRLQDGGHHIVDSSELAFMLASHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGH 661
Query: 817 VTKRHGILQGNEGKDDWVTIYAEM 840
++KRHGI+ G EG + W T+YAE+
Sbjct: 662 LSKRHGIITGTEGTEGWFTVYAEV 685
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194862808|ref|XP_001970133.1| GG23544 [Drosophila erecta] gi|261263145|sp|B3N6A5.1|EFGM_DROER RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|190662000|gb|EDV59192.1| GG23544 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/659 (73%), Positives = 574/659 (87%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 27 YSSHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 86
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 87 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 146
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 147 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESN 206
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLE
Sbjct: 207 CKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLE 266
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N
Sbjct: 267 EKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIE 326
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ GQ+ +K+VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 327 KEGQDPEKIVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 386
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVS
Sbjct: 387 VRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVS 446
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 447 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREY 506
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DE
Sbjct: 507 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLPPTQNTLLEFVDE 566
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 567 TVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 626
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 627 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195117378|ref|XP_002003224.1| GI17797 [Drosophila mojavensis] gi|261263147|sp|B4KKD5.1|EFGM_DROMO RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|193913799|gb|EDW12666.1| GI17797 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/659 (72%), Positives = 573/659 (86%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 29 YSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 88
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYT+WKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 89 SMELERQRGITIQSAATYTVWKDVNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 148
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNAAF+Q+PIG+ +
Sbjct: 149 VQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKLNHNAAFIQLPIGVENN 208
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q +AIYFEG G NLR++EIP D++ E++ +RQELIEH++ DE LGE+FLE
Sbjct: 209 CKGIVDLVQERAIYFEGEHGINLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLE 268
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAV+DYLPNPGEV N A
Sbjct: 269 EKPFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVVDYLPNPGEVENLAYIE 328
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ GQE +++VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ IYN R KK
Sbjct: 329 QEGQEKQQIVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGALRKGDNIYNARNHKK 388
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVS
Sbjct: 389 VRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNNMSMESIFVPEPVVS 448
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 449 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFKFDNDIKETLVSGMGELHLEIYAQRMEREY 508
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPPS NT LEF+DE
Sbjct: 509 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPSQNTLLEFVDE 568
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++MCE+G LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 569 TVGTNVPKQFVPGVEKGYREMCERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 628
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 AVKEVFQNGAWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195437986|ref|XP_002066918.1| GK24732 [Drosophila willistoni] gi|261263151|sp|B4MZW9.1|EFGM_DROWI RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|194163003|gb|EDW77904.1| GK24732 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/659 (72%), Positives = 571/659 (86%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 27 YSSHAKFSEHKPIEKIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 86
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 87 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 146
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 147 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESN 206
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE GE+FLE
Sbjct: 207 CKGIVDLVQEKAIYFEGDHGMDIRLDEIPQDMRAESGERRQELIEHLSNADEKFGELFLE 266
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK+A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N A
Sbjct: 267 EKPFTEKDIKEALRRTCIQRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLAFIE 326
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
G+E +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 327 HEGKEPEKVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 386
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N +++ESI+V +PVVS
Sbjct: 387 VRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNHLAMESIFVPEPVVS 446
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 447 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFHFDNDVKETLVSGMGELHLEIYAQRMEREY 506
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPPS NT LEF+DE
Sbjct: 507 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLPPSQNTLLEFVDE 566
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KG+++M E+G LSG +++G+R L+DG +H+VDS+E++F+LAAHG
Sbjct: 567 TVGTNVPKQFIPGVEKGYREMAERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHG 626
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 627 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195387800|ref|XP_002052580.1| GJ17621 [Drosophila virilis] gi|261263150|sp|B4LS49.1|EFGM_DROVI RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|194149037|gb|EDW64735.1| GJ17621 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/659 (72%), Positives = 574/659 (87%), Gaps = 2/659 (0%)
Query: 184 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMD 243
+ S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MD
Sbjct: 29 YSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMD 88
Query: 244 SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
SMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGG
Sbjct: 89 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGG 148
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
VQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S
Sbjct: 149 VQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKLNHNAAFIQLPIGVESN 208
Query: 364 TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
KGI+DL+Q +AIYFEG G +LR++EIP D++ E++ +RQELIEH++ DE LGE+FLE
Sbjct: 209 CKGIVDLVQERAIYFEGEHGMDLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLE 268
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
EK +E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDA++DYLPNPGEV N A
Sbjct: 269 EKPFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAIIDYLPNPGEVENLAYIE 328
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ G+E ++VVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KK
Sbjct: 329 QEGKEKQQVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKK 388
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVS 601
VR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N +++ESI+V +PVVS
Sbjct: 389 VRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNHMAMESIFVPEPVVS 448
Query: 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
M+IK N KDRDNFSKA+ RFTKEDPTFHF++D + KETLVSGMGELHLEIYAQRMEREY
Sbjct: 449 MAIKPNNTKDRDNFSKAIARFTKEDPTFHFYFDNDVKETLVSGMGELHLEIYAQRMEREY 508
Query: 662 NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE 721
CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DE
Sbjct: 509 GCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGLMEPLPPNQNTLLEFVDE 568
Query: 722 TVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 781
TVGTNVPK F+P + KGF++M E+G LSG +++GVR L+DG +H+VDS+E++F+LAAHG
Sbjct: 569 TVGTNVPKQFVPGVEKGFREMSERGMLSGHKLSGVRFRLQDGGHHIVDSSELAFMLAAHG 628
Query: 782 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
A+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 AIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194762222|ref|XP_001963254.1| GF14034 [Drosophila ananassae] gi|261263144|sp|B3MK91.1|EFGM_DROAN RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; AltName: Full=Protein iconoclast; Flags: Precursor gi|190616951|gb|EDV32475.1| GF14034 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/671 (71%), Positives = 578/671 (86%), Gaps = 4/671 (0%)
Query: 174 RISEMHETSR--WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231
R+ M SR + S+ +EH+PI+ IRNIGISAHIDSGKTTLTERILFYTGRI EMHE
Sbjct: 15 RLRAMETMSRAGYSSHAKYAEHRPIDKIRNIGISAHIDSGKTTLTERILFYTGRIVEMHE 74
Query: 232 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVL 291
VRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVL
Sbjct: 75 VRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVL 134
Query: 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
DGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNA
Sbjct: 135 DGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKMNHNA 194
Query: 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411
AF+Q+PIG+ S KGI+DL++ +AIYFEG G NLR++EIP D++ E++ +RQELIEH++
Sbjct: 195 AFIQLPIGVESNCKGIVDLVRERAIYFEGEHGMNLRLDEIPQDMRVESQERRQELIEHLS 254
Query: 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
D+ GE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVL+YLP
Sbjct: 255 NADDTFGELFLEEKPFTEDDIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVLEYLP 314
Query: 472 NPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRK 529
NPGEV N A + GQ+ +K+VLNP+RDGK F+ LAFKLEAG+FGQLTY+RCYQG LRK
Sbjct: 315 NPGEVENLAFVEKEGQDPEKIVLNPARDGKDAFVGLAFKLEAGRFGQLTYLRCYQGVLRK 374
Query: 530 GEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSIS 589
G+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N+++
Sbjct: 375 GDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLA 434
Query: 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649
+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELH
Sbjct: 435 MESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELH 494
Query: 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP 709
LEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLP
Sbjct: 495 LEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLP 554
Query: 710 PSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769
P+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VD
Sbjct: 555 PNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVD 614
Query: 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829
S+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG
Sbjct: 615 SSELAFMLAAHGAIKEVFQNGNWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEG 674
Query: 830 KDDWVTIYAEM 840
+ W T+YAE+
Sbjct: 675 TEGWFTVYAEV 685
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | ||||||
| FB|FBgn0263133 | 745 | ico "iconoclast" [Drosophila m | 0.627 | 0.879 | 0.738 | 1.5e-289 | |
| UNIPROTKB|B4HY41 | 745 | ico "Elongation factor G, mito | 0.627 | 0.879 | 0.738 | 1.5e-289 | |
| UNIPROTKB|B4Q5D5 | 745 | ico "Elongation factor G, mito | 0.627 | 0.879 | 0.738 | 1.5e-289 | |
| UNIPROTKB|B3N6A5 | 745 | ico "Elongation factor G, mito | 0.627 | 0.879 | 0.736 | 2.4e-289 | |
| UNIPROTKB|B4NZM7 | 745 | ico "Elongation factor G, mito | 0.627 | 0.879 | 0.736 | 3e-289 | |
| UNIPROTKB|B4KKD5 | 747 | ico "Elongation factor G, mito | 0.627 | 0.876 | 0.732 | 2.1e-288 | |
| UNIPROTKB|B4MZW9 | 745 | ico "Elongation factor G, mito | 0.639 | 0.895 | 0.722 | 2.1e-288 | |
| UNIPROTKB|B4LS49 | 747 | ico "Elongation factor G, mito | 0.627 | 0.876 | 0.732 | 1.2e-287 | |
| UNIPROTKB|B3MK91 | 745 | ico "Elongation factor G, mito | 0.639 | 0.895 | 0.713 | 4.5e-286 | |
| UNIPROTKB|Q29N77 | 744 | ico "Elongation factor G, mito | 0.627 | 0.880 | 0.715 | 2.8e-284 |
| FB|FBgn0263133 ico "iconoclast" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2601 (920.7 bits), Expect = 1.5e-289, Sum P(2) = 1.5e-289
Identities = 485/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 29 SHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 88
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 89 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 148
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 149 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 208
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLEEK
Sbjct: 209 GIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLEEK 268
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N IE
Sbjct: 269 PFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIEKE 328
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 329 GQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 388
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 389 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMA 448
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 449 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 508
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 509 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDETV 568
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 569 GTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAI 628
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
|
| UNIPROTKB|B4HY41 ico "Elongation factor G, mitochondrial" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 2601 (920.7 bits), Expect = 1.5e-289, Sum P(2) = 1.5e-289
Identities = 485/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 29 SHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 88
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 89 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 148
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 149 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 208
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLEEK
Sbjct: 209 GIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLEEK 268
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N IE
Sbjct: 269 PFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIEKE 328
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 329 GQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 388
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 389 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMA 448
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 449 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 508
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 509 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDETV 568
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 569 GTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAI 628
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
|
| UNIPROTKB|B4Q5D5 ico "Elongation factor G, mitochondrial" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 2601 (920.7 bits), Expect = 1.5e-289, Sum P(2) = 1.5e-289
Identities = 485/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 29 SHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 88
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 89 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 148
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 149 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 208
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLEEK
Sbjct: 209 GIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLEEK 268
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N IE
Sbjct: 269 PFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIEKE 328
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 329 GQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 388
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 389 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMA 448
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 449 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 508
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 509 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDETV 568
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 569 GTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAI 628
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
|
| UNIPROTKB|B3N6A5 ico "Elongation factor G, mitochondrial" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 2599 (920.0 bits), Expect = 2.4e-289, Sum P(2) = 2.4e-289
Identities = 484/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 29 SHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 88
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 89 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 148
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 149 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 208
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLEEK
Sbjct: 209 GIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLEEK 268
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N IE
Sbjct: 269 PFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIEKE 328
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQ+ +K+VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 329 GQDPEKIVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 388
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 389 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMA 448
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 449 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 508
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 509 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLPPTQNTLLEFVDETV 568
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 569 GTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAI 628
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
|
| UNIPROTKB|B4NZM7 ico "Elongation factor G, mitochondrial" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 2598 (919.6 bits), Expect = 3.0e-289, Sum P(2) = 3.0e-289
Identities = 484/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 29 SHAKFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 88
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 89 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 148
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 149 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 208
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL++ KAIYFEG G ++R++EIP D++ E+ +RQELIEH++ DE LGE+FLEEK
Sbjct: 209 GIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADETLGELFLEEK 268
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLPNPGEV N IE
Sbjct: 269 PFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLGFIEKE 328
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQ+ +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 329 GQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 388
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 389 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMA 448
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 449 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 508
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 509 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPTQNTLLEFVDETV 568
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VDS+E++F+LA+HGA+
Sbjct: 569 GTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLASHGAI 628
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 629 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 685
|
|
| UNIPROTKB|B4KKD5 ico "Elongation factor G, mitochondrial" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 2589 (916.4 bits), Expect = 2.1e-288, Sum P(2) = 2.1e-288
Identities = 481/657 (73%), Positives = 573/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 31 SHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 90
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYT+WKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 91 ELERQRGITIQSAATYTVWKDVNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 150
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNAAF+Q+PIG+ + K
Sbjct: 151 SQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKLNHNAAFIQLPIGVENNCK 210
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL+Q +AIYFEG G NLR++EIP D++ E++ +RQELIEH++ DE LGE+FLEEK
Sbjct: 211 GIVDLVQERAIYFEGEHGINLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLEEK 270
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAV+DYLPNPGEV N A IE
Sbjct: 271 PFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVVDYLPNPGEVENLAYIEQE 330
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
GQE +++VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ IYN R KKVR
Sbjct: 331 GQEKQQIVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGALRKGDNIYNARNHKKVR 390
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N++S+ESI+V +PVVSM+
Sbjct: 391 IARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNNMSMESIFVPEPVVSMA 450
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 451 IKPNNTKDRDNFSKAIARFTKEDPTFHFKFDNDIKETLVSGMGELHLEIYAQRMEREYGC 510
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPPS NT LEF+DETV
Sbjct: 511 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPSQNTLLEFVDETV 570
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++MCE+G LSG +++G+R L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 571 GTNVPKQFVPGVEKGYREMCERGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAV 630
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 631 KEVFQNGAWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
|
| UNIPROTKB|B4MZW9 ico "Elongation factor G, mitochondrial" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 2587 (915.7 bits), Expect = 2.1e-288, Sum P(2) = 2.1e-288
Identities = 485/671 (72%), Positives = 580/671 (86%)
Query: 174 RISEMHETSR--WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231
R++ + S+ + S+ SEHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHE
Sbjct: 15 RLNTLKHLSQCGYSSHAKFSEHKPIEKIRNIGISAHIDSGKTTLTERILFYTGRIAEMHE 74
Query: 232 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVL 291
VRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVL
Sbjct: 75 VRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVL 134
Query: 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
DGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNA
Sbjct: 135 DGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNA 194
Query: 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411
AF+Q+PIG+ S KGI+DL+Q KAIYFEG G ++R++EIP D++ E+ +RQELIEH++
Sbjct: 195 AFIQLPIGVESNCKGIVDLVQEKAIYFEGDHGMDIRLDEIPQDMRAESGERRQELIEHLS 254
Query: 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
DE GE+FLEEK +E DIK+A+RR+ + R FTPVLVGTALKNKGVQ LLDAVLDYLP
Sbjct: 255 NADEKFGELFLEEKPFTEKDIKEALRRTCIQRTFTPVLVGTALKNKGVQPLLDAVLDYLP 314
Query: 472 NPGEVTNYA-IEN-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRK 529
NPGEV N A IE+ G+E +KVVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRK
Sbjct: 315 NPGEVENLAFIEHEGKEPEKVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRK 374
Query: 530 GEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSIS 589
G+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N ++
Sbjct: 375 GDNIFNARTNKKVRIARLVRLHSNQMEDVNEVFAGDIFALFGVDCASGDTFTTNPKNHLA 434
Query: 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649
+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHF +D + KETLVSGMGELH
Sbjct: 435 MESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFHFDNDVKETLVSGMGELH 494
Query: 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP 709
LEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLP
Sbjct: 495 LEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLP 554
Query: 710 PSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769
PS NT LEF+DETVGTNVPK F+P + KG+++M E+G LSG +++G+R L+DG +H+VD
Sbjct: 555 PSQNTLLEFVDETVGTNVPKQFIPGVEKGYREMAERGMLSGHKLSGIRFRLQDGGHHIVD 614
Query: 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829
S+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG
Sbjct: 615 SSELAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEG 674
Query: 830 KDDWVTIYAEM 840
+ W T+YAE+
Sbjct: 675 TEGWFTVYAEV 685
|
|
| UNIPROTKB|B4LS49 ico "Elongation factor G, mitochondrial" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 2580 (913.3 bits), Expect = 1.2e-287, Sum P(2) = 1.2e-287
Identities = 481/657 (73%), Positives = 574/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ +EHKPIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 31 SHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 90
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 91 ELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 150
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 151 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKLNHNAAFIQLPIGVESNCK 210
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
GI+DL+Q +AIYFEG G +LR++EIP D++ E++ +RQELIEH++ DE LGE+FLEEK
Sbjct: 211 GIVDLVQERAIYFEGEHGMDLRLDEIPQDMRVESQERRQELIEHLSNADETLGELFLEEK 270
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
+E DIK A+RR+ + R FTPVLVGTALKNKGVQ LLDA++DYLPNPGEV N A IE
Sbjct: 271 PFTEADIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAIIDYLPNPGEVENLAYIEQE 330
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
G+E ++VVLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 331 GKEKQQVVLNPARDGKDPFMGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 390
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N +++ESI+V +PVVSM+
Sbjct: 391 IARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNHMAMESIFVPEPVVSMA 450
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHF++D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 451 IKPNNTKDRDNFSKAIARFTKEDPTFHFYFDNDVKETLVSGMGELHLEIYAQRMEREYGC 510
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 511 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGLMEPLPPNQNTLLEFVDETV 570
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KGF++M E+G LSG +++GVR L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 571 GTNVPKQFVPGVEKGFREMSERGMLSGHKLSGVRFRLQDGGHHIVDSSELAFMLAAHGAI 630
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 631 KEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 687
|
|
| UNIPROTKB|B3MK91 ico "Elongation factor G, mitochondrial" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 2578 (912.6 bits), Expect = 4.5e-286, Sum P(2) = 4.5e-286
Identities = 479/671 (71%), Positives = 578/671 (86%)
Query: 174 RISEMHETSR--WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231
R+ M SR + S+ +EH+PI+ IRNIGISAHIDSGKTTLTERILFYTGRI EMHE
Sbjct: 15 RLRAMETMSRAGYSSHAKYAEHRPIDKIRNIGISAHIDSGKTTLTERILFYTGRIVEMHE 74
Query: 232 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVL 291
VRGKDNVGA MDSMELERQRGITIQSAATYTLWKD NINIIDTPGHVDFTVEVERALRVL
Sbjct: 75 VRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVL 134
Query: 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
DGA+LVLCAVGGVQSQTLTVNRQMKRY+VPC+AFINKLDR+G++PYRV++QMR K+ HNA
Sbjct: 135 DGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKMNHNA 194
Query: 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411
AF+Q+PIG+ S KGI+DL++ +AIYFEG G NLR++EIP D++ E++ +RQELIEH++
Sbjct: 195 AFIQLPIGVESNCKGIVDLVRERAIYFEGEHGMNLRLDEIPQDMRVESQERRQELIEHLS 254
Query: 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
D+ GE+FLEEK +EDDIK A+RR+ + R FTPVLVGTALKNKGVQ LLDAVL+YLP
Sbjct: 255 NADDTFGELFLEEKPFTEDDIKAALRRTCIKRTFTPVLVGTALKNKGVQPLLDAVLEYLP 314
Query: 472 NPGEVTNYAI--ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRK 529
NPGEV N A + GQ+ +K+VLNP+RDGK F+ LAFKLEAG+FGQLTY+RCYQG LRK
Sbjct: 315 NPGEVENLAFVEKEGQDPEKIVLNPARDGKDAFVGLAFKLEAGRFGQLTYLRCYQGVLRK 374
Query: 530 GEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSIS 589
G+ I+N RT+KKVR++RLVRLHSN+MEDV EV AGDIFALFGVDCASGDTF T+ N+++
Sbjct: 375 GDNIFNARTNKKVRIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLA 434
Query: 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649
+ESI+V +PVVSM+IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELH
Sbjct: 435 MESIFVPEPVVSMAIKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELH 494
Query: 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP 709
LEIYAQRMEREY CPV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLP
Sbjct: 495 LEIYAQRMEREYGCPVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGIMEPLP 554
Query: 710 PSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769
P+ NT LEF+DETVGTNVPK F+P + KG+++M EKG LSG +++G+R L+DG +H+VD
Sbjct: 555 PNQNTLLEFVDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHIVD 614
Query: 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829
S+E++F+LAAHGA+K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG
Sbjct: 615 SSELAFMLAAHGAIKEVFQNGNWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEG 674
Query: 830 KDDWVTIYAEM 840
+ W T+YAE+
Sbjct: 675 TEGWFTVYAEV 685
|
|
| UNIPROTKB|Q29N77 ico "Elongation factor G, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 2557 (905.2 bits), Expect = 2.8e-284, Sum P(2) = 2.8e-284
Identities = 470/657 (71%), Positives = 572/657 (87%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S+ +EH+PIE IRNIGISAHIDSGKTTLTERILFYTGRI+EMHEVRGKDNVGA MDSM
Sbjct: 28 SHAKFAEHRPIEKIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSM 87
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
ELERQRGITIQSAATYT+WKD N+NIIDTPGHVDFTVEVERALRVLDGA+LVLCAVGGVQ
Sbjct: 88 ELERQRGITIQSAATYTMWKDTNVNIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQ 147
Query: 306 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK 365
SQTLTVNRQMKRY+VPC+AFINKLDRLG++PYRV++QMR K+ HNAAF+Q+PIG+ S K
Sbjct: 148 SQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCK 207
Query: 366 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
G++DL++ +AIYFEG G ++R++EIP D++ E++ +RQELIEH++ DE GE FLEEK
Sbjct: 208 GLVDLVREQAIYFEGENGMDVRLDEIPQDMRVESQERRQELIEHLSNADETFGEFFLEEK 267
Query: 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA-IEN- 483
SE D++ A+RR+ + R FTPVLVGTALKNKGVQ LLDAV+DYLPNPGEV N IE
Sbjct: 268 PFSEADLRAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVIDYLPNPGEVENLGFIERE 327
Query: 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
G++ +K+VLNP+RDGK PF+ LAFKLEAG+FGQLTY+RCYQG LRKG+ I+N RT+KKVR
Sbjct: 328 GKDPEKIVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKVR 387
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMS 603
++RLVRLHS++MEDV EV AGDIFALFGVDCASGDTF T+ N++++ESI+V +PVVSM+
Sbjct: 388 IARLVRLHSSQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLAMESIFVPEPVVSMA 447
Query: 604 IKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663
IK N KDRDNFSKA+ RFTKEDPTFHFF+D + KETLVSGMGELHLEIYAQRMEREY C
Sbjct: 448 IKPNNTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC 507
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETV 723
PV LGKPKVAF+ETLV P +FDYLHKKQSGGSGQY R+IG +EPLPP+ NT LEF+DETV
Sbjct: 508 PVTLGKPKVAFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDETV 567
Query: 724 GTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAM 783
GTNVPK F+P + KG+++M E+G LSG R++G++ L+DG +H+VDS+E++F+LAAHGA+
Sbjct: 568 GTNVPKQFVPGVEKGYREMAERGMLSGHRLSGIKFRLQDGGHHIVDSSELAFMLAAHGAI 627
Query: 784 KQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
K+ ++ G WQILEPIM VE++ P EFQG+V+ ++KRHGI+ G EG + W T+YAE+
Sbjct: 628 KEVFQNGSWQILEPIMMVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEV 684
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B4HY41 | EFGM_DROSE | No assigned EC number | 0.7149 | 0.6471 | 0.9060 | N/A | N/A |
| B4NZM7 | EFGM_DROYA | No assigned EC number | 0.7119 | 0.6471 | 0.9060 | N/A | N/A |
| Q6BPD3 | EFGM_DEBHA | No assigned EC number | 0.5302 | 0.6625 | 0.8985 | yes | N/A |
| P0CN32 | EFGM_CRYNJ | No assigned EC number | 0.5367 | 0.6116 | 0.7866 | yes | N/A |
| Q6ASC7 | EFG1_DESPS | No assigned EC number | 0.5454 | 0.6136 | 0.9208 | yes | N/A |
| Q6FUQ6 | EFGM_CANGA | No assigned EC number | 0.5581 | 0.6174 | 0.8507 | yes | N/A |
| Q7Q1K8 | EFGM_ANOGA | No assigned EC number | 0.7091 | 0.6375 | 0.8938 | yes | N/A |
| B4LS49 | EFGM_DROVI | No assigned EC number | 0.7268 | 0.6299 | 0.8795 | N/A | N/A |
| B3N6A5 | EFGM_DROER | No assigned EC number | 0.7314 | 0.6299 | 0.8818 | N/A | N/A |
| Q16S14 | EFGM_AEDAE | No assigned EC number | 0.7147 | 0.6299 | 0.8783 | N/A | N/A |
| B4Q5D5 | EFGM_DROSI | No assigned EC number | 0.7149 | 0.6471 | 0.9060 | N/A | N/A |
| Q08BB1 | EFGM_DANRE | No assigned EC number | 0.6579 | 0.6193 | 0.8671 | yes | N/A |
| P25039 | EFGM_YEAST | No assigned EC number | 0.5703 | 0.6174 | 0.8462 | yes | N/A |
| B4MZW9 | EFGM_DROWI | No assigned EC number | 0.7298 | 0.6299 | 0.8818 | N/A | N/A |
| Q1D9P5 | EFG1_MYXXD | No assigned EC number | 0.5514 | 0.6212 | 0.9204 | yes | N/A |
| Q96RP9 | EFGM_HUMAN | No assigned EC number | 0.6526 | 0.6299 | 0.8748 | yes | N/A |
| B4JQM7 | EFGM_DROGR | No assigned EC number | 0.7132 | 0.6299 | 0.8795 | N/A | N/A |
| Q8K0D5 | EFGM_MOUSE | No assigned EC number | 0.6436 | 0.6596 | 0.9161 | yes | N/A |
| Q9FE64 | EFGM_ORYSJ | No assigned EC number | 0.5515 | 0.6289 | 0.8665 | yes | N/A |
| Q6CRY5 | EFGM_KLULA | No assigned EC number | 0.5705 | 0.6088 | 0.8410 | yes | N/A |
| B4KKD5 | EFGM_DROMO | No assigned EC number | 0.7268 | 0.6299 | 0.8795 | N/A | N/A |
| Q9VM33 | EFGM_DROME | No assigned EC number | 0.7149 | 0.6471 | 0.9060 | yes | N/A |
| Q75CZ5 | EFGM_ASHGO | No assigned EC number | 0.5412 | 0.6174 | 0.8507 | yes | N/A |
| Q07803 | EFGM_RAT | No assigned EC number | 0.6436 | 0.6596 | 0.9161 | yes | N/A |
| Q04Y01 | EFG_LEPBL | No assigned EC number | 0.5419 | 0.6212 | 0.9178 | yes | N/A |
| B3MK91 | EFGM_DROAN | No assigned EC number | 0.7138 | 0.6395 | 0.8953 | N/A | N/A |
| Q9XV52 | EFGM_CAEEL | No assigned EC number | 0.5654 | 0.6299 | 0.876 | yes | N/A |
| Q8F983 | EFG_LEPIN | No assigned EC number | 0.5419 | 0.6212 | 0.9178 | yes | N/A |
| Q5R9V1 | EFGM_PONAB | No assigned EC number | 0.6481 | 0.6299 | 0.8748 | yes | N/A |
| Q72VM5 | EFG_LEPIC | No assigned EC number | 0.5419 | 0.6212 | 0.9178 | yes | N/A |
| B9W9T4 | EFGM_CANDC | No assigned EC number | 0.5501 | 0.6145 | 0.8423 | yes | N/A |
| Q9C641 | EFGM_ARATH | No assigned EC number | 0.5669 | 0.6107 | 0.8448 | yes | N/A |
| Q29N77 | EFGM_DROPS | No assigned EC number | 0.7101 | 0.6299 | 0.8830 | yes | N/A |
| B0WGM1 | EFGM_CULQU | No assigned EC number | 0.7207 | 0.6299 | 0.8830 | N/A | N/A |
| Q04VH3 | EFG_LEPBJ | No assigned EC number | 0.5419 | 0.6212 | 0.9178 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1043 | |||
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 0.0 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 0.0 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 0.0 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 0.0 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 0.0 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 0.0 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 1e-174 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 3e-75 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 9e-75 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 2e-74 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 6e-74 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 7e-71 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 3e-64 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 1e-58 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 3e-55 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 7e-54 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 3e-51 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 5e-51 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 1e-50 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 4e-50 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 1e-49 | |
| cd01434 | 116 | cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains sim | 7e-49 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 5e-47 | |
| cd04091 | 81 | cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of m | 5e-47 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 8e-46 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 1e-45 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 3e-43 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 1e-41 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-41 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 2e-39 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 2e-39 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 3e-39 | |
| cd04097 | 78 | cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitocho | 1e-37 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 1e-37 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 7e-37 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 5e-35 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 1e-34 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 3e-34 | |
| smart00889 | 120 | smart00889, EFG_IV, Elongation factor G, domain IV | 5e-34 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 6e-34 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 9e-34 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 2e-33 | |
| pfam03764 | 120 | pfam03764, EFG_IV, Elongation factor G, domain IV | 1e-32 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-32 | |
| cd03713 | 78 | cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar | 3e-31 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 5e-31 | |
| cd04088 | 83 | cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamil | 7e-31 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 7e-30 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 2e-29 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 2e-29 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 4e-29 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 6e-27 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 9e-27 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 1e-26 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 2e-26 | |
| pfam00679 | 89 | pfam00679, EFG_C, Elongation factor G C-terminus | 6e-26 | |
| smart00838 | 85 | smart00838, EFG_C, Elongation factor G C-terminus | 8e-26 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 2e-25 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 2e-25 | |
| cd01514 | 79 | cd01514, Elongation_Factor_C, Elongation factor G | 2e-25 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 3e-25 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 5e-25 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 1e-22 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 1e-21 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 1e-21 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 2e-21 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 6e-21 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 7e-20 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 8e-20 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 7e-19 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 1e-18 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-18 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 4e-17 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 1e-16 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 2e-16 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 2e-16 | |
| cd01434 | 116 | cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains sim | 5e-16 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 6e-16 | |
| cd04092 | 83 | cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of m | 1e-15 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 3e-14 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 8e-14 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 9e-14 | |
| cd04097 | 78 | cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitocho | 1e-13 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 8e-13 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 1e-12 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 3e-12 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 8e-12 | |
| cd01434 | 116 | cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains sim | 1e-11 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 2e-11 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 2e-11 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 2e-11 | |
| cd03713 | 78 | cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar | 4e-11 | |
| cd01680 | 116 | cd01680, EFG_like_IV, Elongation Factor G-like dom | 4e-11 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 5e-11 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 7e-11 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 7e-11 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 1e-10 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 2e-10 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 2e-10 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 3e-10 | |
| cd04096 | 80 | cd04096, eEF2_snRNP_like_C, eEF2_snRNP_like_C: thi | 3e-10 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 5e-10 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 5e-10 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 8e-10 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 9e-10 | |
| smart00889 | 120 | smart00889, EFG_IV, Elongation factor G, domain IV | 1e-09 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 1e-09 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-09 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 2e-09 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 2e-09 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 3e-09 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 6e-09 | |
| cd03711 | 78 | cd03711, Tet_C, Tet_C: C-terminus of ribosomal pro | 6e-09 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 9e-09 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 9e-09 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 9e-09 | |
| cd01514 | 79 | cd01514, Elongation_Factor_C, Elongation factor G | 2e-08 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 2e-08 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 2e-08 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 3e-08 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 3e-08 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 4e-08 | |
| pfam00679 | 89 | pfam00679, EFG_C, Elongation factor G C-terminus | 5e-08 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 1e-07 | |
| cd03709 | 80 | cd03709, lepA_C, lepA_C: This family represents th | 2e-07 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 2e-07 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-07 | |
| smart00838 | 85 | smart00838, EFG_C, Elongation factor G C-terminus | 3e-07 | |
| pfam03764 | 120 | pfam03764, EFG_IV, Elongation factor G, domain IV | 4e-07 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 5e-07 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 6e-07 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 9e-07 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 1e-06 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 1e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-06 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 2e-06 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 3e-06 | |
| smart00889 | 120 | smart00889, EFG_IV, Elongation factor G, domain IV | 4e-06 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 6e-06 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 9e-06 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-05 | |
| cd04098 | 80 | cd04098, eEF2_C_snRNP, eEF2_C_snRNP: This family i | 1e-05 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 2e-05 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 2e-05 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 4e-05 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 4e-05 | |
| cd03689 | 85 | cd03689, RF3_II, RF3_II: this subfamily represents | 4e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 5e-05 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 5e-05 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 6e-05 | |
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 6e-05 | |
| cd03691 | 86 | cd03691, BipA_TypA_II, BipA_TypA_II: domain II of | 6e-05 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 6e-05 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 1e-04 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 1e-04 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 1e-04 | |
| cd03710 | 79 | cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal po | 1e-04 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 2e-04 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 2e-04 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 3e-04 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 3e-04 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 3e-04 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 3e-04 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 3e-04 | |
| cd03690 | 85 | cd03690, Tet_II, Tet_II: This subfamily represents | 3e-04 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 4e-04 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 5e-04 | |
| cd01693 | 120 | cd01693, mtEFG2_like_IV, mtEF-G2 domain IV | 5e-04 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 6e-04 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 9e-04 | |
| pfam03764 | 120 | pfam03764, EFG_IV, Elongation factor G, domain IV | 9e-04 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 0.001 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 0.001 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 0.001 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 0.001 | |
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 0.001 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 0.001 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 0.002 | |
| cd01680 | 116 | cd01680, EFG_like_IV, Elongation Factor G-like dom | 0.002 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 0.002 | |
| cd00880 | 161 | cd00880, Era_like, E | 0.002 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 0.002 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 0.002 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 0.003 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 789 bits (2040), Expect = 0.0
Identities = 291/638 (45%), Positives = 411/638 (64%), Gaps = 14/638 (2%)
Query: 205 SAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264
H +GKTTLTE ILFYTG I + EV MD M ER+RGI+I SAAT W
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGT---TTMDFMPEERERGISITSAATTCEW 57
Query: 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA 324
K H IN+IDTPGHVDFT EVERALRVLDGA++V+CAVGGV+ QT TV RQ ++Y VP I
Sbjct: 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII 117
Query: 325 FINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGD 384
F+NK+DR GAD +RV+ Q+++K+G LQ+PIG G + G++DL+ KA ++ G
Sbjct: 118 FVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDE--GG 175
Query: 385 NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 444
EIPA+L AE R+EL+E +AE D+ L E +LE + +SE++IK +R++TL +
Sbjct: 176 PSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235
Query: 445 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIA 504
PV G+ALKNKGVQ LLDAV+DYLP+P EV E+G+E ++ +P P +A
Sbjct: 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDG----PLVA 291
Query: 505 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLA 563
L FK F G+L+ +R Y G L+KG+ +YN T KK RV RL R+H + E+V+E +A
Sbjct: 292 LVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVA 351
Query: 564 GDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRF 622
GDI A+ + D A+GDT DK + I LE + +PV+S++I+ + D + S+A+ +
Sbjct: 352 GDIVAVAKLKDAATGDTL-CDKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKL 410
Query: 623 TKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF 682
+EDPT D E+ +T++SGMGELHL++ +R++REY V G P+V ++ET+ +
Sbjct: 411 AEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKA 470
Query: 683 DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQM 742
+ HKKQSGG GQ+G V +EPLP EF+D+ VG VP+ ++PA+ KG ++
Sbjct: 471 EGHGRHKKQSGGHGQFGDVWLEVEPLPRGEG--FEFVDKVVGGAVPRQYIPAVEKGVREA 528
Query: 743 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVE 802
EKG L+G V V++ L DG H VDS+E++F +AA A ++A + +LEPIM VE
Sbjct: 529 LEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVE 588
Query: 803 ISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+S P EF G V+ ++ R G + G E + + AE+
Sbjct: 589 VSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEV 626
|
Length = 668 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 763 bits (1972), Expect = 0.0
Identities = 305/652 (46%), Positives = 428/652 (65%), Gaps = 18/652 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
P+E RNIGI AHID+GKTT TERILFYTG I E+H+ G A MD ME E++R
Sbjct: 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD--G----AATMDWMEQEQER 59
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
GITI SAAT WKDH INIIDTPGHVDFT+EVER+LRVLDGA+ V AVGGV+ Q+ TV
Sbjct: 60 GITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV 119
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLI 371
RQ +Y VP IAF+NK+DR GAD YRV+ Q++ ++G N +Q+PIG + KG++DL+
Sbjct: 120 WRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLV 179
Query: 372 QRKAI-YFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISED 430
+ KAI + E LG EEIPADLK +AE R++LIE AE DE L E +LE + ++E+
Sbjct: 180 KMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEE 239
Query: 431 DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIENGQEDKK 489
+IK A+R++T+ + PVL G+A KNKGVQ LLDAV+DYLP+P +V I E+++
Sbjct: 240 EIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEE 299
Query: 490 VVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 548
V S D PF ALAFK+ F G+LT+ R Y G L G + N KK R+ R++
Sbjct: 300 VERKASDDE--PFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRIL 357
Query: 549 RLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAV 607
++H+N+ E+++EV AGDI A G+ D +GDT + D+ N I LES+ +PV+S++++
Sbjct: 358 QMHANKREEIKEVRAGDIAAAVGLKDTTTGDT-LCDEKNPIILESMEFPEPVISVAVEPK 416
Query: 608 NNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
D++ A+Q+ +EDP+F D E+ +T+++GMGELHL+I RM+RE+ +
Sbjct: 417 TKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANV 476
Query: 668 GKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNV 727
GKP+VA++ET+ + + + KQSGG GQYG V+ EP P EF+++ VG +
Sbjct: 477 GKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKG--YEFVNKIVGGVI 534
Query: 728 PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAY 787
PK ++PA+ KG ++ E G L+G V V++ L DG H VDS+E++F +A A K+A
Sbjct: 535 PKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAA 594
Query: 788 EEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
++ +LEPIM VE+ TP E+ G V+ + R G ++G E + I AE
Sbjct: 595 KKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAE 646
|
Length = 693 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 760 bits (1966), Expect = 0.0
Identities = 305/658 (46%), Positives = 430/658 (65%), Gaps = 22/658 (3%)
Query: 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQ 250
P+E RNIGI AHID+GKTT TERIL+YTG+ I E+H+ G A MD ME E++
Sbjct: 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD--G----AATMDWMEQEQE 56
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RGITI SAAT WK H INIIDTPGHVDFT+EVER+LRVLDGA+ V AV GV+ Q+ T
Sbjct: 57 RGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET 116
Query: 311 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDL 370
V RQ +Y VP I F+NK+DR+GAD +R + Q++ ++G NA +Q+PIG + KG+IDL
Sbjct: 117 VWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDL 176
Query: 371 IQRKAIYFEG-PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429
I+ KAI ++ LG E+IPADLK++AE R++LIE VAE DE L E +LE + I+E
Sbjct: 177 IKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITE 236
Query: 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK 489
++IK AIR++T+ +F PVL G+A KNKGVQ LLDAV+DYLP+P +V N +++
Sbjct: 237 EEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEE 296
Query: 490 VVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 548
+ S D PF ALAFK+ F G+LT+ R Y G L G + N KK R+ RL+
Sbjct: 297 IERPASDDE--PFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLL 354
Query: 549 RLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAV 607
++H+N+ E+++EV AGDI A G+ D +GDT + D+ I LES+ +PV+S++++
Sbjct: 355 QMHANKREEIKEVYAGDIAAAVGLKDTTTGDT-LCDEKAPIILESMEFPEPVISLAVEPK 413
Query: 608 NNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
D+D A+Q+ +EDPTF D E+ +T++SGMGELHL+I RM+RE+ +
Sbjct: 414 TKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANV 473
Query: 668 GKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNV 727
G P+VA++ET+ + + + +KKQSGG GQYG V EP EF+++ VG +
Sbjct: 474 GAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEE--GKGFEFVNKIVGGVI 531
Query: 728 PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAY 787
PK ++PA+ KG ++ + G L+G + V+ L DG H VDS+E++F +AA A+K+A
Sbjct: 532 PKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAA 591
Query: 788 EEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA-----EM 840
++ ILEPIM VE+ TP E+ G V+ + +R G +QG E + + A EM
Sbjct: 592 KKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEM 649
|
Length = 691 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 740 bits (1914), Expect = 0.0
Identities = 313/651 (48%), Positives = 433/651 (66%), Gaps = 16/651 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT 254
P+E IRNIGI AHID+GKTTLTERILFYTG IS++ EV A MD ME E++RGIT
Sbjct: 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGA---ATMDWMEQEQERGIT 62
Query: 255 IQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
I SAAT WK + IN+IDTPGHVDFT+EVER+LRVLDGA++V+ AV GV+ QT TV R
Sbjct: 63 ITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR 122
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQR 373
Q +Y VP I F+NK+DRLGAD Y V+ Q+++++G N +Q+PIG E +G+IDL++
Sbjct: 123 QADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEM 182
Query: 374 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433
KA+ F G EIPADLK+ AE R++L+E +AE DE L E +LE + +E++IK
Sbjct: 183 KAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIK 240
Query: 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIENGQEDKKVVL 492
KA+R+ T+ K PVL G+A KNKGVQ LLDAV+DYLP+P +V + + +K V+
Sbjct: 241 KALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLR 300
Query: 493 NPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH 551
S +G P AL FK+ F G+LT++R Y G L+ G + N KK RV RL+ +H
Sbjct: 301 KASDEG--PLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMH 358
Query: 552 SNEMEDVEEVLAGDIFALFGVDCA-SGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNK 610
NE E+V+EV AGDI AL G+ A +GDT + D+N + LES+ +PV+S++++
Sbjct: 359 GNEREEVDEVPAGDIVALVGLKDATTGDT-LCDENKPVILESMEFPEPVISVAVEPKTKA 417
Query: 611 DRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKP 670
D++ S+A+ + +EDPTF D E+ ET++SGMGELHLEI R++RE+ V +GKP
Sbjct: 418 DQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKP 477
Query: 671 KVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKP 730
+VA++ET+ + + + HKKQSGG GQYG V +EPL + EF+D+ VG VPK
Sbjct: 478 QVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLED--GSGFEFVDKIVGGVVPKE 535
Query: 731 FLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790
++PA+ KGF++ + G L+G V V++ L DG H VDS+E++F +AA A K+A +
Sbjct: 536 YIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKA 595
Query: 791 VWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAE 839
+LEPIM VEI+TP E+ G V+ + R G + G E + I AE
Sbjct: 596 KPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAE 646
|
Length = 697 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 738 bits (1908), Expect = 0.0
Identities = 306/648 (47%), Positives = 426/648 (65%), Gaps = 11/648 (1%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT 254
+ RNIGISAHID+GKTT TERILFYTGRI ++ EV D A MD ME E++RGIT
Sbjct: 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEV--HDGA-ATMDWMEQEKERGIT 62
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 314
I SAAT WK H INIIDTPGHVDFTVEVER+LRVLDGA+ VL AVGGVQ Q+ TV RQ
Sbjct: 63 ITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ 122
Query: 315 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRK 374
RY+VP IAF+NK+D+ GA+ RV+NQ++Q++G NA +Q+PIG G+IDL++ K
Sbjct: 123 ANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMK 182
Query: 375 AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434
A +F G G +EIP+DL ++A+ R+ L+E VAE DE L E +LE + ++ ++IK
Sbjct: 183 AYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKN 242
Query: 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP 494
AIR+ L +F PVL G+A KNKGVQ LLDAV+DYLP+P +V + +K++
Sbjct: 243 AIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKA 302
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
S D PF ALAFK+ F GQLT++R Y G L+ G + N R +KK RV RLV++H+N
Sbjct: 303 SDDE--PFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHAN 360
Query: 554 EMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+++EV AGDI A G+ + GDT K + + LE + +PV+S++++ D+
Sbjct: 361 NREEIKEVRAGDICAAIGLKDTTTGDTLCDPKID-VILERMEFPEPVISLAVEPKTKADQ 419
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ A+ + +EDPTF F DPE+ +T+++GMGELHL+I RM+RE+ +G P+V
Sbjct: 420 EKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQV 479
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ + + H KQSGG GQYG V EPL P EF++E G +P+ ++
Sbjct: 480 AYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKG---YEFVNEIKGGVIPREYI 536
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ E G L+G V ++ L DG H VDS+E++F LAA A K+A ++
Sbjct: 537 PAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANP 596
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+LEPIM VE+ P E+ G V+ ++ R GI++G E + + I AE+
Sbjct: 597 VLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEV 644
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 651 bits (1681), Expect = 0.0
Identities = 278/651 (42%), Positives = 405/651 (62%), Gaps = 13/651 (1%)
Query: 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG 252
P+ IRNIGI AHID+GKTTLTERILFYTG+I +M EV ++ V D M E++RG
Sbjct: 2 EMPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEV---EDGTTVTDWMPQEQERG 58
Query: 253 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 312
ITI+SAAT W +H IN+IDTPGH+DFT EVER+LRVLDGA++V AV GVQ QT TV
Sbjct: 59 ITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118
Query: 313 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 372
RQ RY +P + FINK+DR+GAD ++V+ + ++ G LQ+PIG +G++DLI
Sbjct: 119 RQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLIT 178
Query: 373 RKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431
++F EG G + IP +L +E E R++LIE +AE D+ L E++LE + +S +
Sbjct: 179 EPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQ 238
Query: 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491
++ +R T + PVL G+ALKN G++ LLDAV+DYLP+P EV K V
Sbjct: 239 LRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDN-GKPVK 297
Query: 492 LNPSRDGKHPFIALAFKLEA-GKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRL 550
++P + P +AL FK++ G+LTY+R Y G LR G +YN K+ +V RL RL
Sbjct: 298 VDPDPEK--PLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRL 355
Query: 551 HSNEMEDVEEVLAGDIFALFGVDCA-SGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN 609
N+ E+V+ AGDI A+ G+ +GDT + D + + LE + +PVVS++++
Sbjct: 356 QGNKREEVDRAKAGDIVAVAGLKELETGDT-LHDSADPVLLELLTFPEPVVSLAVEPERR 414
Query: 610 KDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669
D ++A+++ EDP+ D E+ +T++SGMGELHLE+ +R+ RE+ V GK
Sbjct: 415 GDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGK 474
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
P+VA++ET+ + + Y HKKQ GG GQ+G V +EPL A F+ + VG +P+
Sbjct: 475 PQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAG--FIFVSKVVGGAIPE 532
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
+PA+ KG ++ G L+G V +R+ + DG H VDS+E +F AA A +A+ +
Sbjct: 533 ELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRK 592
Query: 790 GVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW-VTIYAE 839
+LEPIM +EI+ P E G VL +++R G ++G E + D V + AE
Sbjct: 593 ANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAE 643
|
Length = 687 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 508 bits (1311), Expect = e-174
Identities = 169/273 (61%), Positives = 209/273 (76%), Gaps = 3/273 (1%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
NIGI AHID+GKTT TERIL+YTGRI ++ EV G GA MD ME ER+RGITIQSAAT
Sbjct: 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDWMEQERERGITIQSAAT 57
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
WKDH INIIDTPGHVDFT+EVER+LRVLDGA+ V AV GVQ QT TV RQ RY V
Sbjct: 58 TCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADRYGV 117
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG 380
P IAF+NK+DR GAD YRV+ Q+R+K+G N LQ+PIG + +G++DLI+ KA+Y++G
Sbjct: 118 PRIAFVNKMDRTGADFYRVVEQIREKLGANPVPLQLPIGAEDDFEGVVDLIEMKALYWDG 177
Query: 381 PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440
LG+ + +IP DL +EAE R+ELIE +AE D+ L E +LE + I+E++IK AIR+ T
Sbjct: 178 ELGEKIEETDIPEDLLEEAEEAREELIETLAEVDDELMEKYLEGEEITEEEIKAAIRKGT 237
Query: 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473
+ K PVL G+A KNKGVQ LLDAV+DYLP+P
Sbjct: 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 3e-75
Identities = 233/854 (27%), Positives = 369/854 (43%), Gaps = 180/854 (21%)
Query: 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
++IRNIGI AHID GKTTL++ +L G ISE E+ G+ +D E E++RGITI
Sbjct: 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGQQ---LYLDFDEQEQERGITIN 71
Query: 257 SAATYTLW----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 312
+A + ++ IN+IDTPGHVDF +V RA+R +DGAI+V+CAV GV QT TV
Sbjct: 72 AANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL 131
Query: 313 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 372
RQ + +V + FINK+DRL IN+++ P L II +
Sbjct: 132 RQALKENVKPVLFINKVDRL-------INELKLT----------PQELQERFIKIITEVN 174
Query: 373 RKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM---------FLE 423
+ L + EE R + V +G G ++
Sbjct: 175 K--------LIKAMAPEEF-----------RDKWKVRVEDGSVAFGSAYYNWAISVPSMK 215
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI-- 481
+ I DI K + A K+ Q +LD V+ +LP+P E Y I
Sbjct: 216 KTGIGFKDIYKYCKEDKQKE--------LAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPV 267
Query: 482 ----ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNV 536
+ E K +LN D K P + K+ K G++ R Y G +R G +Y V
Sbjct: 268 IWKGDLNSEVGKAMLNC--DPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIV 325
Query: 537 RTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESI-Y 594
K R+ ++ E +V+E+ AG+I A+ G+ D +G+T T N ESI +
Sbjct: 326 DRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKH 385
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
+++PVV+++I+A N KD + +++ KEDPT H + E+ E L+SGMGELHLEI
Sbjct: 386 ISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIV 445
Query: 655 QRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANT 714
+++ +Y V P V ++ET+ +G V E P+ +
Sbjct: 446 EKIREDYGLDVETSPPIVVYRETV----------------TGTSPVV----EGKSPNKHN 485
Query: 715 KLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEIS 774
+ + E P ++I+ FK+ ++ ++M E
Sbjct: 486 RFYIVVE--------PLEESVIQAFKE---------GKIVDMKM----------KKKERR 518
Query: 775 FILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWV 834
+L G M V + ++G++ +T+ GI +E K+ +
Sbjct: 519 RLLIEAG-MDSEEAARVEEY--------------YEGNLFINMTR--GIQYLDETKELIL 561
Query: 835 TIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH-GFKQMCEKGCLSGSR 893
+ E G ++ + GV++ L D H A H G Q+
Sbjct: 562 EGFREAMRNGPIAREKCMGVKVKLMDAKLHED---------AVHRGPAQV---------- 602
Query: 894 VAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGS 953
+ VR AM QA +LEP V I+ P + G+
Sbjct: 603 IPAVRS-------------------GIFAAMMQAKP----VLLEPYQKVFINVPQDMMGA 639
Query: 954 VLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA 1013
+ R G + + + D VTI A+ P+ +MFGFAG +R +T G+ +S +++ +
Sbjct: 640 ATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELV 699
Query: 1014 LPEVQDRLVNEYQE 1027
+Q V E ++
Sbjct: 700 PQNLQQEFVMEVRK 713
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 9e-75
Identities = 102/273 (37%), Positives = 157/273 (57%), Gaps = 5/273 (1%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
NI + H SGKTTL E +L+ TG I + V ++ V D E++R ++I+++
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRV---EDGNTVSDYDPEEKKRKMSIETSVA 57
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
W H IN+IDTPG+ DF E ALR +D A++V+ A GV+ T V + +
Sbjct: 58 PLEWNGHKINLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDDAKL 117
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG 380
P I FINK+DR AD + + +R+ G +Q+PIG G E G++DL+ KA ++
Sbjct: 118 PRIIFINKMDRARADFDKTLAALREAFGRPVVPIQLPIGEGDEFTGVVDLLSEKAYRYDP 177
Query: 381 PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440
G+ EIP +LK++ R+EL+E VAE DE L E +LEE ++E++++ +RR+
Sbjct: 178 --GEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAGLRRAL 235
Query: 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473
PV G+AL GV+ LLDA+++ P+P
Sbjct: 236 RAGLIVPVFFGSALTGIGVRRLLDALVELAPSP 268
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 2e-74
Identities = 105/271 (38%), Positives = 147/271 (54%), Gaps = 36/271 (13%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
NIGI AH+D+GKTTLTE +L+ +G I E+ V D DSMELERQRGITI SA
Sbjct: 1 NIGILAHVDAGKTTLTESLLYTSGAIRELGSV---DKGTTRTDSMELERQRGITIFSAVA 57
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
W+D +NIIDTPGH+DF EVER+L VLDGAILV+ AV GVQ+QT + R +++ ++
Sbjct: 58 SFQWEDTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILFRLLRKLNI 117
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG 380
P I F+NK+DR GAD +V ++++K+ + +Q +
Sbjct: 118 PTIIFVNKIDRAGADLEKVYQEIKEKLSPDIVPMQ-----------------------KV 154
Query: 381 PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440
L N+ D E IE VAEG++ L E +L + E ++ +
Sbjct: 155 GLYPNICDTNNIDD----------EQIETVAEGNDELLEKYLSGGPLEELELDNELSARI 204
Query: 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
PV G+ALK G+ LL+ + + P
Sbjct: 205 QKASLFPVYHGSALKGIGIDELLEGITNLFP 235
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 6e-74
Identities = 80/115 (69%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Query: 15 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVL 74
V G GA MD ME ER+RGITIQSAAT WKDH INIIDTPGHVDFT+EVER+LRVL
Sbjct: 32 VHGG---GATMDWMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVL 88
Query: 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
DGA+ V AV GVQ QT TV RQ RY VP IAF+NK+DR GAD YRV+ Q+R+K
Sbjct: 89 DGAVAVFDAVAGVQPQTETVWRQADRYGVPRIAFVNKMDRTGADFYRVVEQIREK 143
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 7e-71
Identities = 169/508 (33%), Positives = 255/508 (50%), Gaps = 82/508 (16%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
E IRNIGI AHID GKTTL++ +L G ISE E+ G+ +D E E+ RGITI
Sbjct: 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISE--ELAGE---QLALDFDEEEQARGITI 71
Query: 256 QSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
+ AA ++ K++ IN+IDTPGHVDF +V RA+R +DGAI+V+ AV GV QT T
Sbjct: 72 K-AANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET 130
Query: 311 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDL 370
V RQ R V + FINK+D R+I ++ K+ ++ L K + L
Sbjct: 131 VLRQALRERVKPVLFINKVD-------RLIKEL--KLTPQ----EMQQRLLKIIKDVNKL 177
Query: 371 IQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM---------F 421
I+ A E K + ++ V +G G
Sbjct: 178 IKGMA----------------------PEEFKEKWKVD-VEDGTVAFGSALYNWAISVPM 214
Query: 422 LEEKSISEDDIKKAIR---RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTN 478
+++ I DI + L K P+ + +LD V+ +LPNP E
Sbjct: 215 MQKTGIKFKDIIDYYEKGKQKELAEK-APL----------HEVVLDMVVKHLPNPIEAQK 263
Query: 479 YAIEN---GQEDKKV---VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGE 531
Y I G + +V +LN +G P + + + G++ R + G LRKG+
Sbjct: 264 YRIPKIWKGDLNSEVGKAMLNCDPNG--PLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQ 321
Query: 532 MIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCA-SGDTFVTDKNNSISL 590
+Y V KK RV ++ E E+VEE+ AG+I A+ G+ A +G+T V +
Sbjct: 322 EVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGET-VVSVEDMTPF 380
Query: 591 ESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649
ES+ ++++PVV+++I+A N KD + +++ KEDPT + E+ E L+SGMGELH
Sbjct: 381 ESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELH 440
Query: 650 LEIYAQRMEREYNCPVVLGKPKVAFKET 677
LE+ R++R+Y VV +P V ++ET
Sbjct: 441 LEVITYRIKRDYGIEVVTSEPIVVYRET 468
|
Length = 731 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 3e-64
Identities = 140/475 (29%), Positives = 227/475 (47%), Gaps = 32/475 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I E V+G+ A D ME+E+QRGI++ S+
Sbjct: 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSS 72
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+ D +N++DTPGH DF+ + R L +D A++V+ A G++ QTL + +
Sbjct: 73 VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR 132
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D+P FINKLDR G DP +++++ +++G A + PIG+G + KG+ L + +
Sbjct: 133 DIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELY 192
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
E D R +I L E L E EE + + +
Sbjct: 193 ESGHTDQERRADIVKGLDNPELDALLG---------EDLAEQLREELELVQGAGNEFDLE 243
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498
+ L + TPV G+AL N GV LDA++D+ P+P Q D + V P+ D
Sbjct: 244 AFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRAR--------QADTREV-EPTED- 293
Query: 499 KHPFIALAFKLEAGKFGQ----LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
F FK++A + + +MR GK +G + +VRT K V++S + + +
Sbjct: 294 --KFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQD 351
Query: 555 MEDVEEVLAGDIFALF--GVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E VEE AGDI L G GDTF + + I P + ++ + +
Sbjct: 352 RETVEEAYAGDIIGLHNHGT-IQIGDTFTEGEK--LKFTGIPNFAPELFRRVRLKDPLKQ 408
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K +++ +E F + + ++ +G+L E+ R++ EYN V
Sbjct: 409 KQLKKGLEQLAEEGAV-QVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAVF 462
|
Length = 528 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 1e-58
Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 8/167 (4%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
RNIGI H+D GKTTLT+ +L+ TG IS+ V+D ++ ER+RGITI+ A
Sbjct: 3 HRNIGIIGHVDHGKTTLTDALLYVTGAISK-----ESAKGARVLDKLKEERERGITIKIA 57
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
A K INIIDTPGHVDFT E+ R DGAILV+ AV GV QT K
Sbjct: 58 AVSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTL 117
Query: 319 DVPCIAFINKLDRL-GADPYRVINQMRQKVGHNAAF--LQIPIGLGS 362
VP I FINK+DR+ A+ V+ ++ +++ F +P+ GS
Sbjct: 118 GVPIIVFINKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGS 164
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-55
Identities = 71/107 (66%), Positives = 85/107 (79%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A MD ME E++RGITI SAAT WKDH INIIDTPGHVDFT+EVER+LRVLDGA+ V
Sbjct: 48 ATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFD 107
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
AVGGV+ Q+ TV RQ +Y VP IAF+NK+DR GAD YRV+ Q++ +
Sbjct: 108 AVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDR 154
|
Length = 693 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 197 bits (501), Expect = 7e-54
Identities = 132/474 (27%), Positives = 219/474 (46%), Gaps = 30/474 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTT+TE++L Y G I V+G+ A D ME+E+QRGI+I ++
Sbjct: 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTS 71
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
++D +N++DTPGH DF+ + R L +D ++V+ A GV+++T + +
Sbjct: 72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR 131
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D P F+NKLDR DP +++++ ++ N A + PIG G KG+ L++ + +
Sbjct: 132 DTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLY 191
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ G ++ L A A G ++ + +E + E +
Sbjct: 192 QSGTGGTIQAVRQVKGLNNPALD--------SAVGSDLAQQ-LRDELELVEGASNEFDLA 242
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498
+ + TPV GTAL N GV LD +L + P P E Q D + V P+ +
Sbjct: 243 AFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKP--------EARQSDTRTV-EPTEE- 292
Query: 499 KHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
F FK++A ++ +MR GK KG + +VRT K V +S + + +
Sbjct: 293 --KFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGD 350
Query: 555 MEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
E VEE AGDI L GDTF + I I P + I+ + +
Sbjct: 351 REHVEEAYAGDIIGLHNHGTIQIGDTFTQGE--KIKFTGIPNFAPELFRRIRLKDPLKQK 408
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K + + ++E F ++ + +V +G L ++ R++ EYN
Sbjct: 409 QLLKGLVQLSEEGAV-QVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEARY 461
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 3e-51
Identities = 66/108 (61%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME E++RGITI SAAT WK H INIIDTPGHVDFT+EVER+LRVLDGA+ V
Sbjct: 45 AATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVF 104
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
AV GV+ Q+ TV RQ +Y VP I F+NK+DR+GAD +R + Q++ +
Sbjct: 105 DAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDR 152
|
Length = 691 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 5e-51
Identities = 72/127 (56%), Positives = 90/127 (70%), Gaps = 4/127 (3%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
IH + +V MD M ER+RGI+I SAAT WK H IN+IDTPGHVDFT
Sbjct: 20 GAIH-RIGEVEDGT---TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTG 75
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQ 125
EVERALRVLDGA++V+CAVGGV+ QT TV RQ ++Y VP I F+NK+DR GAD +RV+ Q
Sbjct: 76 EVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQ 135
Query: 126 MRQKTSR 132
+++K
Sbjct: 136 LQEKLGA 142
|
Length = 668 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-50
Identities = 146/505 (28%), Positives = 231/505 (45%), Gaps = 92/505 (18%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I E V+G K A D ME+E+QRGI++ S+
Sbjct: 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSS 70
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQM 315
++D IN++DTPGH DF+ + R L +D A++V+ A GV+ QT + V R
Sbjct: 71 VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL- 129
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
R D P FINKLDR G +P +++++ + +G A + PIG+G KG+ DL +
Sbjct: 130 -R-DTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEV 187
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV-----AEGDEILGEMFLEEKSISED 430
++ QE +E + E DE+LGE E+ +
Sbjct: 188 ELYQ-----------------PGEGHTIQE-VEIIKGLDNPELDELLGEDLAEQ---LRE 226
Query: 431 DI-----------KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY 479
++ +A L + TPV G+AL N GVQ LDA +++ P P
Sbjct: 227 ELELVQGASNEFDLEAF----LAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQP---- 278
Query: 480 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG---------KFGQLTYMRCYQGKLRKG 530
Q D++ V P+ + F FK++A F +R GK KG
Sbjct: 279 ----RQTDEREVE-PTEE---KFSGFVFKIQANMDPKHRDRIAF-----VRVCSGKFEKG 325
Query: 531 EMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI--------FALFGVDCASGDTFVT 582
+ +VRT K VR+S + + + E VEE AGDI + GDTF
Sbjct: 326 MKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQI-------GDTFTQ 378
Query: 583 DKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLV 642
+ + I P + ++ N + K + + ++E F ++ + ++
Sbjct: 379 GEK--LKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGAV-QVFRPLDNNDLIL 435
Query: 643 SGMGELHLEIYAQRMEREYNCPVVL 667
+G+L E+ A R++ EYN +
Sbjct: 436 GAVGQLQFEVVAHRLKNEYNVEAIY 460
|
Length = 526 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 4e-50
Identities = 73/107 (68%), Positives = 87/107 (81%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A MD ME E++RGITI SAAT WK H INIIDTPGHVDFTVEVER+LRVLDGA+ VL
Sbjct: 48 ATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLD 107
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
AVGGVQ Q+ TV RQ RY+VP IAF+NK+D+ GA+ RV+NQ++Q+
Sbjct: 108 AVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQR 154
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 1e-49
Identities = 96/277 (34%), Positives = 147/277 (53%), Gaps = 14/277 (5%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I E V+ K A D ME+E+QRGI++ S+
Sbjct: 3 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVTSS 62
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+K IN++DTPGH DF+ + R L +D A++V+ A GV+ QT + +
Sbjct: 63 VMQFEYKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR 122
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
+P I FINKLDR G DP +++++ ++G + A + PIG+G + KG+ D ++ +
Sbjct: 123 GIPIITFINKLDREGRDPLELLDEIENELGIDCAPMTWPIGMGKDFKGVYDRYDKEIYLY 182
Query: 379 EGPLGDNLRIEEIPADL--KKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436
E G ++ E L K E ++L E + E E++ + + K+
Sbjct: 183 ERGAGGAIKAPEETKGLDDPKLDELLGEDLAEQLREELELV-------EGAGPEFDKELF 235
Query: 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473
L TPV G+AL N GVQ LLDA + P P
Sbjct: 236 LAGEL----TPVFFGSALNNFGVQELLDAFVKLAPAP 268
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|238715 cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 7e-49
Identities = 53/117 (45%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET+ +P +F+Y HKKQSGG+GQYG V+ +EPLP + EF+++ VG +PK ++P
Sbjct: 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPR--GSGFEFVNKIVGGAIPKEYIP 58
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790
A+ KGF++ EKG L+G V V++ L DG H VDS+E++F +AA A K+A+++
Sbjct: 59 AVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 116 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 5e-47
Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 10/172 (5%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G+ H+D GKTTLT +L+ TG I +D+++ ER+RGITI++
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTR-----KETFLDTLKEERERGITIKTGVV 55
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
W IN IDTPGH DF+ E R L DGA+LV+ A GV+ QT +
Sbjct: 56 EFEWPKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGL 115
Query: 321 PCIAFINKLDRLG-ADPYRVINQMRQKVGH----NAAFLQIPIGLGSETKGI 367
P I +NK+DR+G D V+ ++++ + +PI S G
Sbjct: 116 PIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGE 167
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|239758 cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 5e-47
Identities = 62/81 (76%), Positives = 70/81 (86%)
Query: 502 FIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEV 561
F+ LAFKLE G+FGQLTYMR YQGKL+KG+ IYNVRT KKVRV RLVR+HSNEME+VEE
Sbjct: 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEA 60
Query: 562 LAGDIFALFGVDCASGDTFVT 582
AGDI A+FG+DCASGDTF
Sbjct: 61 GAGDICAIFGIDCASGDTFTD 81
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 81 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 8e-46
Identities = 62/113 (54%), Positives = 81/113 (71%)
Query: 19 DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAI 78
D DSMELERQRGITI SA W+D +NIIDTPGH+DF EVER+L VLDGAI
Sbjct: 33 DKGTTRTDSMELERQRGITIFSAVASFQWEDTKVNIIDTPGHMDFIAEVERSLSVLDGAI 92
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131
LV+ AV GVQ+QT + R +++ ++P I F+NK+DR GAD +V ++++K S
Sbjct: 93 LVISAVEGVQAQTRILFRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLS 145
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 1e-45
Identities = 67/112 (59%), Positives = 85/112 (75%), Gaps = 1/112 (0%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILV 80
A MD ME E++RGITI SAAT WK + IN+IDTPGHVDFT+EVER+LRVLDGA++V
Sbjct: 47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVV 106
Query: 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132
+ AV GV+ QT TV RQ +Y VP I F+NK+DRLGAD Y V+ Q++++
Sbjct: 107 VDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158
|
Length = 697 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-43
Identities = 62/110 (56%), Positives = 82/110 (74%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
V D M E++RGITI+SAAT W +H IN+IDTPGH+DFT EVER+LRVLDGA++V
Sbjct: 46 TVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFD 105
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132
AV GVQ QT TV RQ RY +P + FINK+DR+GAD ++V+ + ++ +
Sbjct: 106 AVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGK 155
|
Length = 687 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-41
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 16 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLD 75
+ V+D ++ ER+RGITI+ AA K INIIDTPGHVDFT E+ R D
Sbjct: 32 KESAKGARVLDKLKEERERGITIKIAAVSFETKKRLINIIDTPGHVDFTKEMIRGASQAD 91
Query: 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL-GADPYRVINQMRQK 129
GAILV+ AV GV QT K VP I FINK+DR+ A+ V+ ++ ++
Sbjct: 92 GAILVVDAVEGVMPQTREHLLLAKTLGVPIIVFINKIDRVDDAELEEVVEEISRE 146
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-41
Identities = 60/144 (41%), Positives = 90/144 (62%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ EKG L+G V V++ L DG H VDS+E++F +AA A ++A + +LEP
Sbjct: 524 GVREALEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEP 583
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+S P EF G V+ ++ R G + G E + + AE+PL +MFG+A DLRS TQ
Sbjct: 584 IMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQ 643
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+G FSM++S Y V ++++
Sbjct: 644 GRGSFSMEFSHYEEVPGNVAEKVI 667
|
Length = 668 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-39
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
GF++ + G L+G V V++ L DG H VDS+E++F +AA A K+A + +LEP
Sbjct: 543 GFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEP 602
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFAGDLRSS 996
IM VEI+TP E+ G V+ + R G + G E + I AE+PL +MFG+A DLRS+
Sbjct: 603 IMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSA 662
Query: 997 TQGKGEFSMDYSRYSPALPEVQDRLVNEYQEA 1028
TQG+ FSM++ Y V + ++ + ++
Sbjct: 663 TQGRASFSMEFDHYEEVPSSVAEEIIAKRRKR 694
|
Length = 697 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IRNI I AH+D GKTTL + +L +G E EV + VMDS +LER+RGITI +
Sbjct: 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVGER-----VMDSNDLERERGITILAK 56
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
T +KD INIIDTPGH DF EVER L ++DG +L++ A G QT V ++
Sbjct: 57 NTAITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEA 116
Query: 319 DVPCIAFINKLDRLGADPYRVINQM 343
+ I INK+DR A P V++++
Sbjct: 117 GLKPIVVINKIDRPDARPEEVVDEV 141
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-39
Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 14/142 (9%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAA 259
RNI I AH+D GKTTL++ +L G ISE ++ GK +D+ E E++RGITI+S+A
Sbjct: 1 RNICIIAHVDHGKTTLSDSLLASAGIISE--KLAGKARY---LDTREDEQERGITIKSSA 55
Query: 260 -----TYTLW----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
Y D+ IN+ID+PGHVDF+ EV ALR+ DGA++V+ AV GV QT T
Sbjct: 56 ISLYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTET 115
Query: 311 VNRQMKRYDVPCIAFINKLDRL 332
V RQ V + INK+DRL
Sbjct: 116 VLRQALEERVKPVLVINKIDRL 137
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-37
Identities = 43/78 (55%), Positives = 59/78 (75%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSS 996
EPIM VE++ P EFQG+V+ L+ KR G + + +D T+ AE+PLNDMFG++ +LRS
Sbjct: 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSM 60
Query: 997 TQGKGEFSMDYSRYSPAL 1014
TQGKGEFSM++SRY+P
Sbjct: 61 TQGKGEFSMEFSRYAPVP 78
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 78 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 11/149 (7%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAA 259
RN I AHID GK+TL +R+L TG +SE ++ V+DSM+LER+RGITI++ A
Sbjct: 1 RNFSIIAHIDHGKSTLADRLLELTGTVSE------REMKEQVLDSMDLERERGITIKAQA 54
Query: 260 -----TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 314
+++ +N+IDTPGHVDF+ EV R+L +GA+LV+ A GV++QTL
Sbjct: 55 VRLFYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYL 114
Query: 315 MKRYDVPCIAFINKLDRLGADPYRVINQM 343
++ I INK+D ADP RV ++
Sbjct: 115 ALENNLEIIPVINKIDLPAADPDRVKQEI 143
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 7e-37
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 878 HGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE 937
G ++ G L+G V +R+ + DG H VDS+E +F AA A +A+ + +LE
Sbjct: 540 KGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLE 599
Query: 938 PIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW-VTIYAEIPLNDMFGFAGDLRSS 996
PIM +EI+ P E G VL +++R G ++G E + D V + AE PL ++FG+A LRS
Sbjct: 600 PIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSM 659
Query: 997 TQGKGEFSMDYSRYSPALPEVQDRL 1021
T+G+G F+M++S + P P VQ ++
Sbjct: 660 TKGRGSFTMEFSHFDPVPPAVQKKV 684
|
Length = 687 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-35
Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 15/162 (9%)
Query: 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQR 251
++ IRN I AHID GK+TL +R++ TG +S EM V+DSM+LER+R
Sbjct: 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKA--------QVLDSMDLERER 53
Query: 252 GITIQSAA---TYTLW--KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
GITI++ A Y + + +N+IDTPGHVDF+ EV R+L +GA+LV+ A GV++
Sbjct: 54 GITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA 113
Query: 307 QTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
QTL D+ I +NK+D ADP RV ++ +G
Sbjct: 114 QTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG 155
|
Length = 600 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-34
Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 15/162 (9%)
Query: 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQR 251
P + IRN I AHID GK+TL +R+L TG +S EM V+DSM++ER+R
Sbjct: 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA--------QVLDSMDIERER 55
Query: 252 GITIQSAATYTLWKDHN-----INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
GITI++ A +K + +N+IDTPGHVDF+ EV R+L +GA+LV+ A GV++
Sbjct: 56 GITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA 115
Query: 307 QTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
QTL ++ I +NK+D ADP RV ++ +G
Sbjct: 116 QTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG 157
|
Length = 603 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-34
Identities = 63/147 (42%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+E IRNI I AH+D GKTTL + +L +G E EV + VMDS +LE++RGITI
Sbjct: 2 MEDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAER-----VMDSNDLEKERGITI 56
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+ T + INI+DTPGH DF EVER L ++DG +L++ A G QT V ++
Sbjct: 57 LAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKA 116
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQ 342
+ I INK+DR A P V+++
Sbjct: 117 LALGLKPIVVINKIDRPDARPDEVVDE 143
|
Length = 603 |
| >gnl|CDD|214887 smart00889, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-34
Identities = 53/121 (43%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
Query: 671 KVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
+VA++ET+ +P + + HKKQSGG GQY RVI +EPL + EF D VG +PK
Sbjct: 1 QVAYRETITKPVKEAEGKHKKQSGGDGQYARVILEVEPLERGSG--FEFDDTIVGGVIPK 58
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
++PA+ KGF++ E+G L+G V V++ L DG H VDS+E++F AA A K+A +
Sbjct: 59 EYIPAVEKGFREALEEGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKPAARRAFKEALLK 118
Query: 790 G 790
Sbjct: 119 A 119
|
Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. Length = 120 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IRNI I AH+D GKTTL + +L +G V + VMDS +LER+RGITI +
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAER-----VMDSNDLERERGITILAK 55
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
T + INI+DTPGH DF EVER L ++DG +L++ A G QT V ++
Sbjct: 56 NTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL 115
Query: 319 DVPCIAFINKLDRLGADPYRVINQ 342
+ I INK+DR A P V+++
Sbjct: 116 GLKPIVVINKIDRPSARPDEVVDE 139
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 9e-34
Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ E G L+G V ++ L DG H VDS+E++F LAA A K+A ++ +LEP
Sbjct: 542 GLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEP 601
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ P E+ G V+ ++ R GI++G E + + I AE+PL++MFG+A DLRS TQ
Sbjct: 602 IMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYATDLRSFTQ 661
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQEATN 1030
G+G +SM++ Y EV + NE E
Sbjct: 662 GRGTYSMEFLHYG----EVPSSVANEIIEKRK 689
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 15/161 (9%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQRGITIQ 256
IRN I AHID GK+TL +R+L YTG IS EM E V+DSM+LER+RGITI+
Sbjct: 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMRE--------QVLDSMDLERERGITIK 54
Query: 257 SAATYTLWKDHN-----INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
+ A +K + +N+IDTPGHVDF+ EV R+L +GA+L++ A G+++QTL
Sbjct: 55 AQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLAN 114
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352
D+ I INK+D ADP RV ++ + +G +A+
Sbjct: 115 VYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDAS 155
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|202760 pfam03764, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 55/122 (45%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 670 PKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVP 728
P+VA++ET+ + Y KKQSGG GQY +VI +EPLP N EF+DET G P
Sbjct: 1 PQVAYRETIGKDVKERAYKLKKQSGGDGQYAKVILRIEPLPGGGN---EFVDETKGGQYP 57
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
F PA+ KGF++ ++G L+G V V++ L DG H VDS+E +FI AA A K+A
Sbjct: 58 NEFKPAVEKGFQEAMKEGPLAGEPVRDVKVTLTDGSYHEVDSSEAAFIPAARRAFKEALL 117
Query: 789 EG 790
+
Sbjct: 118 KA 119
|
This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Length = 120 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
+++ R +D+++ ER+RGITI++ W IN IDTPGH DF+
Sbjct: 18 SLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPKRRINFIDTPGHEDFSK 77
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVIN 124
E R L DGA+LV+ A GV+ QT +P I +NK+DR+G D V+
Sbjct: 78 ETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVAVNKIDRVGEEDFDEVLR 137
Query: 125 QMR 127
+++
Sbjct: 138 EIK 140
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|239683 cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-31
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSS 996
EPIM VE++ P E+ G V+ ++ R G + G E + W I AE+PL +MFG++ DLRS
Sbjct: 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSL 60
Query: 997 TQGKGEFSMDYSRYSPA 1013
TQG+G F+M++S Y
Sbjct: 61 TQGRGSFTMEFSHYEEV 77
|
Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 78 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-31
Identities = 56/148 (37%), Positives = 89/148 (60%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ E G L+G V V++ L DG H VDS+E++F +A A K+A ++ +LEP
Sbjct: 545 GIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E+ G V+ + R G ++G E + I AE+PL++MFG+A DLRS TQ
Sbjct: 605 IMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGYATDLRSMTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
G+ +SM++ Y V + ++ + +
Sbjct: 665 GRATYSMEFDHYEEVPKNVAEEIIKKRK 692
|
Length = 693 |
| >gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 7e-31
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560
F+AL FK F G+L+++R Y G L+ G +YN KK RV RL+R+H + E+VEE
Sbjct: 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEE 60
Query: 561 VLAGDIFALFGVDC-ASGDTFVT 582
AGDI A+ G+ A+GDT
Sbjct: 61 AGAGDIGAVAGLKDTATGDTLCD 83
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. mtEFG1 and mtEFG2 show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 83 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 7e-30
Identities = 72/189 (38%), Positives = 91/189 (48%), Gaps = 54/189 (28%)
Query: 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLS-EHKPIEYIRNIG 203
E IRNIGI AHID GKTTL++ +L G ISE ++ E L+ + E R I
Sbjct: 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE------LAGEQLALDFDEEEQARGIT 70
Query: 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL 263
I A +S +HE G
Sbjct: 71 IKA-----------------ANVSMVHEYEG----------------------------- 84
Query: 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 323
K++ IN+IDTPGHVDF +V RA+R +DGAI+V+ AV GV QT TV RQ R V +
Sbjct: 85 -KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV 143
Query: 324 AFINKLDRL 332
FINK+DRL
Sbjct: 144 LFINKVDRL 152
|
Length = 731 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 48/103 (46%), Positives = 65/103 (63%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
VMDS +LER+RGITI + T +KD INIIDTPGH DF EVER L ++DG +L++ A
Sbjct: 39 VMDSNDLERERGITILAKNTAITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDA 98
Query: 84 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
G QT V ++ + I INK+DR A P V++++
Sbjct: 99 SEGPMPQTRFVLKKALEAGLKPIVVINKIDRPDARPEEVVDEV 141
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 11/136 (8%)
Query: 24 VMDSMELERQRGITIQSAA-----TYTLW----KDHNINIIDTPGHVDFTVEVERALRVL 74
+D+ E E++RGITI+S+A Y D+ IN+ID+PGHVDF+ EV ALR+
Sbjct: 37 YLDTREDEQERGITIKSSAISLYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLT 96
Query: 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI 134
DGA++V+ AV GV QT TV RQ V + INK+DRL + + Q+ R +
Sbjct: 97 DGALVVVDAVEGVCVQTETVLRQALEERVKPVLVINKIDRLILELKLSPEEAYQRLLRIV 156
Query: 135 S--NESLSEHKPIEYI 148
N + + P E+
Sbjct: 157 EDVNAIIETYAPEEFK 172
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-29
Identities = 55/146 (37%), Positives = 90/146 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 542 GLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEP 601
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E+ G V+ + +R G +QG E + + A +PL++MFG+A DLRS+TQ
Sbjct: 602 IMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYATDLRSATQ 661
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+ FSM++ Y + + ++ +
Sbjct: 662 GRATFSMEFDHYEEVPKNIAEEIIKK 687
|
Length = 691 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQS-- 257
RN+ I+ H+ GKT+L + ++ T + + V+ D+ + E++RGI+I+S
Sbjct: 1 RNVCIAGHLHHGKTSLLDMLIEQTHKRT--PSVKLGWKPLRYTDTRKDEQERGISIKSNP 58
Query: 258 ---AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 314
+ K + INIIDTPGHV+F EV ALR+ DG +LV+ V G+ S T + R
Sbjct: 59 ISLVLEDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRH 118
Query: 315 MKRYDVPCIAFINKLDRL 332
+ +P + INK+DRL
Sbjct: 119 AIQEGLPMVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 9e-27
Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 5/148 (3%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
IE +RNI I AH+D GKTTL +++L +G E + + VMDS +LE++RGITI
Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQER-----VMDSNDLEKERGITI 56
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+ T W D+ INI+DTPGH DF EVER + ++D +LV+ A G QT V ++
Sbjct: 57 LAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKA 116
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQM 343
Y + I INK+DR GA P V++Q+
Sbjct: 117 FAYGLKPIVVINKVDRPGARPDWVVDQV 144
|
Length = 607 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Query: 15 VRGKDNVGAVMDSMELERQRGITIQSAA-----TYTLWKDHNINIIDTPGHVDFTVEVER 69
V ++ V+DSM+LER+RGITI++ A +++ +N+IDTPGHVDF+ EV R
Sbjct: 27 VSEREMKEQVLDSMDLERERGITIKAQAVRLFYKAKDGEEYLLNLIDTPGHVDFSYEVSR 86
Query: 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
+L +GA+LV+ A GV++QTL ++ I INK+D ADP RV ++
Sbjct: 87 SLAACEGALLVVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPAADPDRVKQEI 143
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 24 VMDSMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78
+D E E+ RGITI+ AA ++ K++ IN+IDTPGHVDF +V RA+R +DGAI
Sbjct: 57 ALDFDEEEQARGITIK-AANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAI 115
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115
+V+ AV GV QT TV RQ R V + FINK+DRL
Sbjct: 116 VVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152
|
Length = 731 |
| >gnl|CDD|201388 pfam00679, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-26
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGD 992
+LEPIM VEI+ P E+ G V+ + +R G + E V I AE+PL ++FGF+ +
Sbjct: 1 VLLEPIMKVEITVPEEYLGDVIGDLNQRRGEILDMEPDGGGRVVIEAEVPLAELFGFSTE 60
Query: 993 LRSSTQGKGEFSMDYSRYSPALPEVQDRL 1021
LRS TQG+G FSM++S Y P ++ DRL
Sbjct: 61 LRSLTQGRGSFSMEFSGYEPVPGDILDRL 89
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 89 |
| >gnl|CDD|197906 smart00838, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-26
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
+LEPIM VE++ P E+ G V+ + R G ++G E + I A++PL++MFG+A DLR
Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLR 60
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQD 1019
S+TQG+ +SM++S Y + +
Sbjct: 61 SATQGRATWSMEFSHYEEVPKSIAE 85
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 85 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-25
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
VMDS +LE++RGITI + T + INI+DTPGH DF EVER L ++DG +L++ A
Sbjct: 42 VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDA 101
Query: 84 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQ 125
G QT V ++ + I INK+DR A P V+++
Sbjct: 102 SEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDE 143
|
Length = 603 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-25
Identities = 45/102 (44%), Positives = 62/102 (60%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
VMDS +LER+RGITI + T + INI+DTPGH DF EVER L ++DG +L++ A
Sbjct: 38 VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDA 97
Query: 84 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQ 125
G QT V ++ + I INK+DR A P V+++
Sbjct: 98 SEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDE 139
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|238772 cd01514, Elongation_Factor_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 2e-25
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRS 995
EPIM VEI+ P E+ G+V+ ++KR G + G E + V I AE+PL +MFGFA DLRS
Sbjct: 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60
Query: 996 STQGKGEFSMDYSRYSPA 1013
TQG+ FSM++S Y P
Sbjct: 61 LTQGRASFSMEFSHYEPV 78
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Tet(M) and Tet(O) mediate Tc resistance. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. Yeast Snu114p is essential for cell viability and for splicing in vivo. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. The function of LepA proteins is unknown. Length = 79 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 40/110 (36%), Positives = 61/110 (55%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
V D E++R ++I+++ W H IN+IDTPG+ DF E ALR +D A++V+
Sbjct: 37 TVSDYDPEEKKRKMSIETSVAPLEWNGHKINLIDTPGYADFVGETLSALRAVDAALIVVE 96
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132
A GV+ T V + +P I FINK+DR AD + + +R+ R
Sbjct: 97 AQSGVEVGTEKVWEFLDDAKLPRIIFINKMDRARADFDKTLAALREAFGR 146
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-25
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
+ IRN+ + AH+D GK+TLT+ ++ G IS + G D+ E++RGITI+
Sbjct: 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISS--KNAGD---ARFTDTRADEQERGITIK 71
Query: 257 SAAT-----YTLWKDHN-----INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
S + L + IN+ID+PGHVDF+ EV ALRV DGA++V+ V GV
Sbjct: 72 STGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV 131
Query: 307 QTLTVNRQMKRYDVPCIAFINKLDRL 332
QT TV RQ + + + FINK+DR
Sbjct: 132 QTETVLRQALQERIRPVLFINKVDRA 157
|
Length = 836 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAA---TYTLW--KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ A Y + + +N+IDTPGHVDF+ EV R+L +GA+
Sbjct: 43 VLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGAL 102
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL D+ I +NK+D ADP RV ++
Sbjct: 103 LVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEI 150
|
Length = 600 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-21
Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHN-----INIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM++ER+RGITI++ A +K + +N+IDTPGHVDF+ EV R+L +GA+
Sbjct: 45 VLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGAL 104
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL ++ I +NK+D ADP RV ++
Sbjct: 105 LVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEI 152
|
Length = 603 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-21
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 25/151 (16%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV--MDSMELERQRGITIQ 256
IRN+ + AH+D GK+TLT+ ++ G I++ + G V D+ E +RGITI+
Sbjct: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-------EVAGDVRMTDTRADEAERGITIK 71
Query: 257 SAA-------------TYTLWKDHN---INIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
S + +D N IN+ID+PGHVDF+ EV ALR+ DGA++V+
Sbjct: 72 STGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 131
Query: 301 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331
+ GV QT TV RQ + + +NK+DR
Sbjct: 132 IEGVCVQTETVLRQALGERIRPVLTVNKMDR 162
|
Length = 843 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 2e-21
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHN-----INIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ A +K + +N+IDTPGHVDF+ EV R+L +GA+
Sbjct: 39 VLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGAL 98
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQ 125
L++ A G+++QTL D+ I INK+D ADP RV +
Sbjct: 99 LLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKE 145
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-21
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 15 VRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
V+ K A D ME+E+QRGI++ S+ +K IN++DTPGH DF+ + R L
Sbjct: 35 VKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYKGCVINLLDTPGHEDFSEDTYRTLTA 94
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D A++V+ A GV+ QT + + +P I FINKLDR G DP +++++ +
Sbjct: 95 VDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIENE 150
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 7e-20
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 15 VRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
V+G+ A D ME+E+QRGI++ S+ + D +N++DTPGH DF+ + R L
Sbjct: 45 VKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTA 104
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D A++V+ A G++ QTL + + D+P FINKLDR G DP +++++ ++
Sbjct: 105 VDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEE 160
|
Length = 528 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 8e-20
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 18/125 (14%)
Query: 9 HIKQEQVRGKDNV--GAVMDSMEL------------ERQRGITIQSAATYTLW----KDH 50
HI + DN+ GA M S EL E++RGITI +A + ++
Sbjct: 27 HIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEY 86
Query: 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFIN 110
IN+IDTPGHVDF +V RA+R +DGAI+V+CAV GV QT TV RQ + +V + FIN
Sbjct: 87 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFIN 146
Query: 111 KLDRL 115
K+DRL
Sbjct: 147 KVDRL 151
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-19
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQS-----AATYTLWKDHNINIIDTPG 59
++ H + V+ D+ + E++RGI+I+S + K + INIIDTPG
Sbjct: 21 IEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLVLEDSKGKSYLINIIDTPG 80
Query: 60 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115
HV+F EV ALR+ DG +LV+ V G+ S T + R + +P + INK+DRL
Sbjct: 81 HVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQEGLPMVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 1e-18
Identities = 48/103 (46%), Positives = 66/103 (64%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
VMDS +LE++RGITI + T W D+ INI+DTPGH DF EVER + ++D +LV+ A
Sbjct: 42 VMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDA 101
Query: 84 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
G QT V ++ Y + I INK+DR GA P V++Q+
Sbjct: 102 FDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQV 144
|
Length = 607 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-18
Identities = 36/144 (25%), Positives = 51/144 (35%), Gaps = 26/144 (18%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
I I + GK+TL R+L I+E + + G T +
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTT------RNYVTTVIEEDGKTYK-- 52
Query: 259 ATYTLWKDHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
N++DT G D+ VE +LRV D ILVL ++ QT +
Sbjct: 53 ----------FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEI 102
Query: 312 NRQMKRYDVPCIAFINKLDRLGAD 335
VP I NK+D A
Sbjct: 103 IHH-AESGVPIILVGNKIDLRDAK 125
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-17
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 25 MDSMELERQRGITIQSAAT-----YTLWKDHN-----INIIDTPGHVDFTVEVERALRVL 74
D+ E++RGITI+S + L + IN+ID+PGHVDF+ EV ALRV
Sbjct: 57 TDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVT 116
Query: 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115
DGA++V+ V GV QT TV RQ + + + FINK+DR
Sbjct: 117 DGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157
|
Length = 836 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 20/160 (12%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH-G------AMKQAYEEG 931
GF++ ++G L+ V GV++ L D H D A H G A++ A
Sbjct: 565 GFREAMKEGPLAAEPVRGVKVRLHDAKLHE-D--------AIHRGPAQVIPAVRNAIFAA 615
Query: 932 VWQ----ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMF 987
+ +LEPI V+I+ P ++ G+V + R G + E + D I AE P+ +MF
Sbjct: 616 MLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMF 675
Query: 988 GFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQE 1027
GFAG++RS+T+G+ +S +++ + P +Q +V + +E
Sbjct: 676 GFAGEIRSATEGRALWSTEFAGFEPVPDSLQLDIVRQIRE 715
|
Length = 731 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 15 VRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
V+G+ A D ME+E+QRGI+I ++ ++D +N++DTPGH DF+ + R L
Sbjct: 44 VKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTA 103
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
+D ++V+ A GV+++T + + D P F+NKLDR DP +++++
Sbjct: 104 VDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVEN 158
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (208), Expect = 2e-16
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 6/97 (6%)
Query: 26 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85
D ME+E+QRGI++ S+ ++D IN++DTPGH DF+ + R L +D A++V+ A
Sbjct: 55 DWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK 114
Query: 86 GVQSQT---LTVNRQMKRYDVPCIAFINKLDRLGADP 119
GV+ QT + V R R D P FINKLDR G +P
Sbjct: 115 GVEPQTRKLMEVCRL--R-DTPIFTFINKLDRDGREP 148
|
Length = 526 |
| >gnl|CDD|238715 cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 5e-16
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 873 FILAAH-GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 931
+I A GF++ EKG L+G V V++ L DG H VDS+E++F +AA A K+A+++
Sbjct: 56 YIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 116 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 6e-16
Identities = 99/450 (22%), Positives = 178/450 (39%), Gaps = 100/450 (22%)
Query: 461 TLLDAVLDYLPNPGEVTNYAIEN----GQEDKKVVLNPSRDGKHPFIALAFKL----EAG 512
TLL+ ++D+LP+P E Y +EN +D+ + D P + K+ + G
Sbjct: 327 TLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKG 386
Query: 513 KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR------------------VSRLVRLHSNE 554
+F + R + G V T +KVR + R V +
Sbjct: 387 RF--YAFGRVFSGT---------VATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRY 435
Query: 555 MEDVEEVLAGDIFALFGVDCA---SGDTFVTDKNNSISLESI-YVADPVVSMSIKAVNNK 610
+E +E+V G+ L GVD SG +T + ++ + Y PVV ++++ N K
Sbjct: 436 VEQIEDVPCGNTVGLVGVDQYLVKSGT--ITTSETAHNIRDMKYSVSPVVRVAVEPKNPK 493
Query: 611 DRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGK 669
D + ++R K DP + ES E +V+G GELH+EI + +E +Y N +++
Sbjct: 494 DLPKLVEGLKRLAKSDPLVVCTTE-ESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSD 552
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP-------------PSANTKL 716
P V+++ET+ + L K + ++ R+ EPL P + K
Sbjct: 553 PVVSYRETVTEESSQTCLSKSPN----KHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKE 608
Query: 717 E------------------------------FIDETVGTNVPKPFLPAIIKGFKQMCEKG 746
+D T G + + F+ ++G
Sbjct: 609 RANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEG 668
Query: 747 CLSGSRVAGVRMVLKDGDNHMVD-----SNEISFILAAHGAMKQAYEEGVWQILEPIMSV 801
L + G+R + D H D + +I I A ++LEP+ V
Sbjct: 669 VLCDENMRGIRFNILDVTLH-ADAIHRGAGQI--IPTARRVFYACELTASPRLLEPMFLV 725
Query: 802 EISTPIEFQGSVLNLVTKRHGILQGNEGKD 831
+I+ P + G + +++ +R G++ G E +
Sbjct: 726 DITAPEDAMGGIYSVLNRRRGVVIGEEQRP 755
|
Length = 836 |
| >gnl|CDD|239759 cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-15
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560
ALAFK+ G LT++R Y G L++G +YN T KK R+SRL++ +++ +++
Sbjct: 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPS 60
Query: 561 VLAGDIFALFGV-DCASGDTFVT 582
+ AG+I + G+ +GDT VT
Sbjct: 61 LSAGNIGVITGLKQTRTGDTLVT 83
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are not present in this group. Length = 83 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 19 DNVGAV--MDSMELERQRGITIQSAA-------------TYTLWKDHN---INIIDTPGH 60
+ G V D+ E +RGITI+S + +D N IN+ID+PGH
Sbjct: 49 EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGH 108
Query: 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
VDF+ EV ALR+ DGA++V+ + GV QT TV RQ + + +NK+DR
Sbjct: 109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162
|
Length = 843 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 8e-14
Identities = 52/142 (36%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKTTL ++I R + NV A E GIT A
Sbjct: 8 HVDHGKTTLLDKI-----RKT---------NVAA----GEA---GGITQHIGAYQVPIDV 46
Query: 267 HN--INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA 324
I IDTPGH FT R V D AILV+ A GV QT+ K +VP I
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 325 FINKLDRL---GADPYRVINQM 343
INK+D+ ADP RV N++
Sbjct: 107 AINKIDKPYGTEADPERVKNEL 128
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-14
Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 55/238 (23%)
Query: 462 LLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYM 520
L DA++ ++P P G D+ P L L+ ++ G++
Sbjct: 182 LFDAIVRHVPAP---------KGDLDE------------PLQMLVTNLDYDEYLGRIAIG 220
Query: 521 RCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS- 576
R ++G ++KG+ + ++ D + R+S+L+ E +++E AGDI A+ G++ +
Sbjct: 221 RVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINI 280
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNN--------------KDRDNFSKAVQR- 621
G+T + D +L +I V +P +SM+ +VN+ RD + ++
Sbjct: 281 GET-IADPEVPEALPTITVDEPTLSMTF-SVNDSPLAGKEGKKVTSRHIRDRLMRELETN 338
Query: 622 -FTKEDPTFHFFYDPESKET-LVSGMGELHLEIYAQRMERE-YNCPVVLGKPKVAFKE 676
+ + T ES + VSG GELHL I + M RE + V G+P+V +KE
Sbjct: 339 VALRVEDT-------ESADKFEVSGRGELHLSILIETMRREGFELQV--GRPQVIYKE 387
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
EPIM VE++ P EFQG+V+ L+ KR G + + +D T+ AE
Sbjct: 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAE 44
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 78 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-13
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 186 SNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM 245
S + L E P+ + I H+D GKT+L + I K V
Sbjct: 79 SGDLLVERPPV-----VTIMGHVDHGKTSLLDSIR--------------KTKVAQ----- 114
Query: 246 ELERQRGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
GIT Q Y + + I +DTPGH FT R +V D +LV+ A G
Sbjct: 115 --GEAGGIT-QHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG 171
Query: 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 345
V QT+ K +VP I INK+D+ A+P RV ++ +
Sbjct: 172 VMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE 213
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 207 HIDSGKTTLTERILFYTGRISE--------MHEVRGKDN--VGAVMDSMELERQRGITIQ 256
H+D+GK+TL R+L+ G I + + GK++ V+D + ER+RG+TI
Sbjct: 15 HVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTID 74
Query: 257 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
A + +N IID PGH DF + D A+LV+ A G V Q +
Sbjct: 75 VAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTR 134
|
Length = 428 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-12
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 201 NIGISAHIDSGKTTLTERILFYTG--------RISEMHEVRGK--DNVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L+ TG + E + +GK VMD ++ ER+
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA--VGGVQSQ- 307
RG+TI A + I+D PGH DF + D A+LV+ A GGV Q
Sbjct: 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT 127
Query: 308 --------TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
TL +N Q+ I INK+D + D R +++++V
Sbjct: 128 REHVFLARTLGIN-QL-------IVAINKMDAVNYDEKR-YEEVKEEVS 167
|
Length = 425 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-12
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 35 GITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL 92
GIT Q Y + + I +DTPGH FT R +V D +LV+ A GV QT+
Sbjct: 119 GIT-QHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI 177
Query: 93 TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
K +VP I INK+D+ A+P RV ++ +
Sbjct: 178 EAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE 213
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|238715 cd01434, EFG_mtEFG1_IV, EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-11
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 839 EMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA-HGFKQMCEKGC 888
E EKG L+G V V++ L DG H VDS+E++F +AA FK+ +K
Sbjct: 66 EALEKGPLAGYPVVDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 116 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 37/220 (16%)
Query: 489 KVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKV---RV 544
V P D P +L+ + G++ R ++G ++ + + +++D R+
Sbjct: 192 DHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRI 251
Query: 545 SRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMS 603
++L+ E ++EE AGDI A+ G++ + GDT + D +N +L ++ V +P +SM+
Sbjct: 252 TKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDT-ICDPDNPEALPALSVDEPTLSMT 310
Query: 604 IKAVNNK-------DRDNFSKAVQRFTKE---------DPTFHFFYDPESKET-LVSGMG 646
+VN+ + R KE + T ES + VSG G
Sbjct: 311 F-SVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEET-------ESPDAFEVSGRG 362
Query: 647 ELHLEIYAQRMERE-YNCPVVLGKPKVAFKE---TLVQPF 682
ELHL I + M RE + V +P+V KE +PF
Sbjct: 363 ELHLSILIENMRREGFELQV--SRPEVIIKEIDGVKCEPF 400
|
Length = 603 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 39/98 (39%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 34 RGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 91
GIT A I IDTPGH FT R V D AILV+ A GV QT
Sbjct: 31 GGITQHIGAYQVPIDVKIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQT 90
Query: 92 LTVNRQMKRYDVPCIAFINKLDRL---GADPYRVINQM 126
+ K +VP I INK+D+ ADP RV N++
Sbjct: 91 IEAINHAKAANVPIIVAINKIDKPYGTEADPERVKNEL 128
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDN--VGAVMDSMELERQ 250
N+ + H+D+GK+TLT +L+ G + + + + GK++ V+D ++ ER+
Sbjct: 1 NLVVIGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERE 60
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDF 280
RG+TI + + IID PGH DF
Sbjct: 61 RGVTIDVGLAKFETEKYRFTIIDAPGHRDF 90
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|239683 cd03713, EFG_mtEFG_C, EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-11
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
EPIM VE++ P E+ G V+ ++ R G + G E + W I AE
Sbjct: 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAE 44
|
Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 78 |
| >gnl|CDD|238838 cd01680, EFG_like_IV, Elongation Factor G-like domain IV | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-11
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 674 FKETLVQP----FDFDYLHKKQSGGSGQYGRVIGTLEPLP-PSANTKLEFIDETVGTNVP 728
++ET+ + +F+ ++ GG Q+G V +EPL S +D +P
Sbjct: 1 YRETIRKSVEATGEFE----RELGGKPQFGEVTLRVEPLERGSGV---RVVDPVDEELLP 53
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
A+ +G + C G L+G + VR+ + D H S E F AA A + A +
Sbjct: 54 AELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQ 113
Query: 789 EG 790
+
Sbjct: 114 KA 115
|
This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. Length = 116 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-11
Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 458 GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516
G++ +L+A++ +P P D P AL F + G
Sbjct: 167 GIEEILEAIVKRVPPP---------------------KGDPDAPLKALIFDSHYDNYRGV 205
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV--- 572
+ +R ++G ++ G+ I + T K+ V V + + ++ +E+ AG++ + + G+
Sbjct: 206 VALVRVFEGTIKPGDKIRFMSTGKEYEVDE-VGVFTPKLTKTDELSAGEVGYIIAGIKDV 264
Query: 573 -DCASGDTFVTDKNNSIS-LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 630
D GDT KN + L P+V + ++ +D ++ A+++ D +
Sbjct: 265 SDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASL- 323
Query: 631 FFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
Y+PES L G +G LH+EI +R+ERE+N ++ P V ++
Sbjct: 324 -TYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYR 372
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-11
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNV--RTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV 572
G + R G L+KG+ + T KK RV+ L H + E V AG I A G+
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60
Query: 573 DCAS-GDTFV 581
GDT
Sbjct: 61 KDIKRGDTLT 70
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 7e-11
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT I T +++ + K +D E+ RGITI +A
Sbjct: 4 NVGTIGHVDHGKTTLTAAI---TKVLAKKGGAKAKK--YDEIDKAPEEKARGITINTAHV 58
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMK 316
Y H + +D PGH D+ + +DGAILV+ A G QT L + RQ+
Sbjct: 59 EYETANRHYAH-VDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV- 116
Query: 317 RYDVPCIA-FINKLD 330
VP I F+NK D
Sbjct: 117 --GVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 39/197 (19%)
Query: 172 TGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231
+ S + TS E+ PI + I H+D GKTTL + +
Sbjct: 224 NEKTSNLDNTS--AFTENSINRPPI-----VTILGHVDHGKTTL-------------LDK 263
Query: 232 VRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINII--DTPGHVDFTVEVERA 287
+R + GIT + A + KD N I+ DTPGH F+ R
Sbjct: 264 IRKTQIAQ--------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRG 315
Query: 288 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347
V D AIL++ A GV+ QT+ ++ +VP I INK+D+ A+ R+ Q+
Sbjct: 316 ANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQL---- 371
Query: 348 GHNAAFLQIPIGLGSET 364
A + IP G +T
Sbjct: 372 ---AKYNLIPEKWGGDT 385
|
Length = 742 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 49/143 (34%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-- 264
H+D GKTTL ++I R K NV A GIT A
Sbjct: 13 HVDHGKTTLLDKI-------------R-KTNVAA-------GEAGGITQHIGAYQVPLDV 51
Query: 265 -KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 323
K I IDTPGH FT R V D AILV+ A GV QT+ K VP +
Sbjct: 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIV 111
Query: 324 AFINKLDRLGADPYRVINQMRQK 346
INK+D+ A+P +V ++++
Sbjct: 112 VAINKIDKPEANPDKVKQELQEY 134
|
Length = 509 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQ 250
N+ H+D GK+T +L+ G I E + +GK + VMD ++ ER+
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERE 68
Query: 251 RGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--- 303
RG+TI A WK + + I+D PGH DF + D A+LV+ G
Sbjct: 69 RGVTIDVA----HWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124
Query: 304 VQSQ---------TLTVNRQMKRYDVPCIAFINKLDRLGADPYR------VINQMRQKVG 348
VQ Q TL +N+ I INK+D + D ++ + +KVG
Sbjct: 125 VQPQTREHAFLARTLGINQ--------LIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVG 176
Query: 349 HN 350
+N
Sbjct: 177 YN 178
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-10
Identities = 102/467 (21%), Positives = 178/467 (38%), Gaps = 118/467 (25%)
Query: 449 LVGTALKNKGVQTLL---DAVLD----YLPNPGEVTNYAIENGQE----DKKVVLNPSRD 497
L+G AL + +QT L DA+L+ +LP+P + Y +EN E DK + D
Sbjct: 312 LMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCD 371
Query: 498 GKHPFIALAFKL----EAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR---------- 543
P + K+ + G+F + R + G V T KVR
Sbjct: 372 PNGPLMLYVSKMIPASDKGRF--FAFGRVFSGT---------VATGMKVRIMGPNYVPGE 420
Query: 544 --------VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYV 595
V R V + E VE+V G+ A+ G+D F+T KN +++ E
Sbjct: 421 KKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLD-----QFIT-KNATLTNEKEVD 474
Query: 596 ADPVVSMSI-------KAVNNKDRDNFSKAVQ---RFTKEDPTFHFFYDPESKETLVSGM 645
A P+ +M AV K+ + K V+ R K DP + ES E +++G
Sbjct: 475 AHPIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIE-ESGEHIIAGA 533
Query: 646 GELHLEIYAQRMEREY--NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIG 703
GELHLEI + ++ ++ + + P V+F+ET+++ S ++ R+
Sbjct: 534 GELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSC----RTVMSKSPNKHNRLYM 589
Query: 704 TLEPLP-------------PSANTKLE------------------------------FID 720
PL P + K+ +D
Sbjct: 590 EARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVD 649
Query: 721 ETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEI-----SF 775
G +++ GF+ ++G L+ + G+ + D H ++ I
Sbjct: 650 MCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLH---ADAIHRGGGQI 706
Query: 776 ILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHG 822
I A + + ++LEP+ VEI P + G + +++ ++ G
Sbjct: 707 IPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 753
|
Length = 843 |
| >gnl|CDD|239763 cd04096, eEF2_snRNP_like_C, eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-10
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFAGDLR 994
EPI VEI P + G V ++++KR G + E K+ I A +P+ + FGF DLR
Sbjct: 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLR 60
Query: 995 SSTQGKGEFSMDYSRYSP 1012
S+T G+ + +S +
Sbjct: 61 SATSGQAFPQLVFSHWEI 78
|
Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 80 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT I T +++ K +D+ E+ RGITI +A
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKKGGAEAKAY--DQIDNAPEEKARGITINTAHV 68
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMK 316
Y H +D PGH D+ + +DGAILV+ A G QT + + RQ
Sbjct: 69 EYETANRH-YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-- 125
Query: 317 RYDVPCI-AFINKLD 330
VP I F+NK+D
Sbjct: 126 -VGVPYIVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
IG + HID GKTTL + + G V D + E++RGITI
Sbjct: 2 IIGTAGHIDHGKTTLLKAL------------------TGGVTDRLPEEKKRGITIDLGFY 43
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
Y +D + ID PGH DF + L +D A+LV+ A G+ +QT + +
Sbjct: 44 YRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGI 103
Query: 321 PCIAF-INKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK--GIIDL 370
+ K DR D R I Q +++ + + I S GI +L
Sbjct: 104 KNGIIVLTKADR--VDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153
|
Length = 447 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 8e-10
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 36/230 (15%)
Query: 458 GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516
G++ +L+A+++ +P P G D P AL F + G
Sbjct: 173 GIEDVLEAIVEKIPPP---------KGDPDA------------PLKALIFDSWYDNYLGV 211
Query: 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV--- 572
+ +R + G L+KG+ I + T K+ V V + + +M V+E+ AG++ + + G+
Sbjct: 212 VVLVRIFDGTLKKGDKIRMMSTGKEYEVDE-VGIFTPKMVKVDELKAGEVGYIIAGIKDV 270
Query: 573 -DCASGDTFVTDKNNSIS-LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 630
D GDT N + L P+V + V++ D ++ A+++ D +
Sbjct: 271 RDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASL- 329
Query: 631 FFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
Y+PE+ + L G +G LH+EI +R+ERE++ ++ P V +K
Sbjct: 330 -TYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYK 378
|
Length = 603 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 9e-10
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 35 GITIQSAATYTLW---KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 91
GIT A K I IDTPGH FT R V D AILV+ A GV QT
Sbjct: 37 GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQT 96
Query: 92 LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ K VP + INK+D+ A+P +V ++++
Sbjct: 97 IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY 134
|
Length = 509 |
| >gnl|CDD|214887 smart00889, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 931
GF++ E+G L+G V V++ L DG H VDS+E++F AA A K+A +
Sbjct: 67 GFREALEEGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKPAARRAFKEALLKA 119
|
Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. Length = 120 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG H+D GKTTLT I T ++E + KD +D+ E++RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAI---TKVLAERGLNQAKDY--DSIDAAPEEKERGITINTAHV 68
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMK 316
Y K H + +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 69 EYETEKRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV- 126
Query: 317 RYDVPCI-AFINKLD 330
VP + F+NK+D
Sbjct: 127 --GVPYLVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF-------TVEVERALRVLDG 76
+ + G T + N++DT G D+ VE +LRV D
Sbjct: 37 RNYVTTVIEEDGKTYK------------FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDI 84
Query: 77 AILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 118
ILVL ++ QT + VP I NK+D A
Sbjct: 85 VILVLDVEEILEKQTKEIIHH-AESGVPIILVGNKIDLRDAK 125
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 179 HETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV 238
+ W S + + KP N+G H+D GKTTLT I T ++E GK
Sbjct: 44 SPSPWWRSMATFTRTKPH---VNVGTIGHVDHGKTTLTAAI---TKVLAE----EGKAKA 93
Query: 239 GAV--MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAI 295
A +D E+ RGITI +A Y K H + +D PGH D+ + +DG I
Sbjct: 94 VAFDEIDKAPEEKARGITIATAHVEYETAKRHYAH-VDCPGHADYVKNMITGAAQMDGGI 152
Query: 296 LVLCAVGGVQSQTLTVNRQMKRYDVPCIA-FINKLD 330
LV+ A G QT ++ VP + F+NK+D
Sbjct: 153 LVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVD 188
|
Length = 447 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 207 HIDSGKTTLTERILFYTGRISE--MHEVRGKDNVGA---------VMDSMELERQRGITI 255
+D GK+TL R+L+ + I E + + + G ++D ++ ER++GITI
Sbjct: 7 SVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAEREQGITI 66
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
A Y I DTPGH +T + D AIL++ A GV QT
Sbjct: 67 DVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT 119
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 18/137 (13%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
NIG H+D GKTTLT I T +++ R D + D+ E+ RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAI---TTVLAKEGGAAARAYDQI----DNAPEEKARGITINTA 66
Query: 259 -ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQ 314
Y H + +D PGH D+ + +DGAILV+ A G QT + + RQ
Sbjct: 67 HVEYETENRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ 125
Query: 315 MKRYDVPCI-AFINKLD 330
+ VP I F+NK D
Sbjct: 126 V---GVPYIVVFLNKCD 139
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 6e-09
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
N+G H+D GKTTLT I T +++ E + D + D+ E+ RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TKVLAKKGGGEAKAYDQI----DNAPEEKARGITINTS 66
Query: 259 -ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQ 314
Y H + +D PGH D+ + +DGAILV+ A G QT + + RQ
Sbjct: 67 HVEYETANRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ 125
Query: 315 MKRYDVPCI-AFINKLD 330
+ VP I F+NK D
Sbjct: 126 V---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|239682 cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-09
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSS 996
EP + E+ P + G ++ + K + + K D VT+ IP+ + +L S
Sbjct: 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSY 60
Query: 997 TQGKGEFSMDYSRYSPA 1013
T G+G ++ Y P
Sbjct: 61 THGEGVLETEFKGYRPC 77
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 78 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-09
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW--VTIYAEIPLNDMFGFAGD 992
+LEP+ V+I+ P + G + +++ +R G++ G E + I A +P+ + FGF
Sbjct: 718 LLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAA 777
Query: 993 LRSSTQGK 1000
LR++T G+
Sbjct: 778 LRAATSGQ 785
|
Length = 836 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-09
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG H+D GKTTLT I T ++ + K +DS E+ RGITI +A
Sbjct: 14 NIGTIGHVDHGKTTLTAAI---TMTLAAKGGAKAKKY--DEIDSAPEEKARGITINTAHV 68
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMK 316
Y H + +D PGH D+ + +DGAILV+ A G QT + + +Q+
Sbjct: 69 EYETENRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV- 126
Query: 317 RYDVPCI-AFINKLDRL 332
VP I F+NK D++
Sbjct: 127 --GVPNIVVFLNKEDQV 141
|
Length = 409 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
I + H+D GKTTL + + G D + E++RG+TI
Sbjct: 2 IIATAGHVDHGKTTLLKAL------------------TGIAADRLPEEKKRGMTIDLGFA 43
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
Y D+ + ID PGH F +D A+LV+ A GV +QT + +
Sbjct: 44 YFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGI 103
Query: 321 PC-IAFINKLDR 331
P I I K DR
Sbjct: 104 PHTIVVITKADR 115
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|238772 cd01514, Elongation_Factor_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEM 840
EPIM VEI+ P E+ G+V+ ++KR G + G E + V I AE+
Sbjct: 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAEL 46
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Tet(M) and Tet(O) mediate Tc resistance. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. Yeast Snu114p is essential for cell viability and for splicing in vivo. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. The function of LepA proteins is unknown. Length = 79 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY 261
IG + HID GKTTL + + TG + D + E++RGITI Y
Sbjct: 2 IGTAGHIDHGKTTLIKAL---TGIET---------------DRLPEEKKRGITIDLGFAY 43
Query: 262 T-LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
L + ID PGH F + +D +LV+ A G+ QT ++ +
Sbjct: 44 LDLPDGKRLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGI 103
Query: 321 P-CIAFINKLDRLGADPYRVINQMRQ 345
+ + K D D R+ +
Sbjct: 104 KKGLVVLTKADL--VDEDRLELVEEE 127
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-08
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
N+G H+D GKTTLT I T +++ E + D + D E+ RGITI +A
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TKVLAKKGGAEAKAYDQI----DKAPEEKARGITINTA 66
Query: 259 -ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQ 314
Y K H + +D PGH D+ + +DGAILV+ A G QT + + RQ
Sbjct: 67 HVEYETEKRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ 125
Query: 315 MKRYDVPCI-AFINKLD 330
+ VP I F+NK D
Sbjct: 126 V---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 35 GITIQSAATYTLW--KDHNINII--DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90
GIT + A + KD N I+ DTPGH F+ R V D AIL++ A GV+ Q
Sbjct: 276 GITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQ 335
Query: 91 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
T+ ++ +VP I INK+D+ A+ R+ Q+ +
Sbjct: 336 TIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAK 373
|
Length = 742 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 3e-08
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK--DNVGAVMDSMELERQRGITIQSA 258
NIG H+D GKTTLT + T ++ M K D + D+ ER RGITI +A
Sbjct: 83 NIGTIGHVDHGKTTLTAAL---TMALASMGGSAPKKYDEI----DAAPEERARGITINTA 135
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
++ + +D PGH D+ + +DGAILV+ G QT K+
Sbjct: 136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV 195
Query: 319 DVP-CIAFINKLDRL 332
VP + F+NK D++
Sbjct: 196 GVPNMVVFLNKQDQV 210
|
Length = 478 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 25/149 (16%)
Query: 209 DSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268
GK++L +L VG V D
Sbjct: 7 GVGKSSLLNALL--------------GGEVGEVSD----VPGTTRDPDVYVKELDKGKVK 48
Query: 269 INIIDTPGHVDFTV-----EVERALRVLDGAILVLCAVGG--VQSQTLTVNRQMKRYDVP 321
+ ++DTPG +F LR D +LV+ + + L + R++++ +P
Sbjct: 49 LVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP 108
Query: 322 CIAFINKLDRLGADPYRVINQMRQKVGHN 350
I NK+D L + ++ +
Sbjct: 109 IILVGNKIDLLEEREVEELLRLEELAKIL 137
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|201388 pfam00679, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-08
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEM 840
+LEPIM VEI+ P E+ G V+ + +R G + E V I AE+
Sbjct: 1 VLLEPIMKVEITVPEEYLGDVIGDLNQRRGEILDMEPDGGGRVVIEAEV 49
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 89 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRI------------SEMHEVRGKDNVGAVMDSMELE 248
N+ + H+DSGK+T T +++ G I +EM +G V+D ++ E
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMG--KGSFKYAWVLDKLKAE 66
Query: 249 RQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
R+RGITI A LWK + IID PGH DF + D AILV+ + G
Sbjct: 67 RERGITIDIA----LWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121
|
Length = 446 |
| >gnl|CDD|239680 cd03709, lepA_C, lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-07
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNE--GKDDWVTIYAEIPLNDM-FGFAGDL 993
EP + I TP E+ G+++ L +R G+ + E + + Y E+PL ++ + F L
Sbjct: 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTY-ELPLAEIVYDFFDKL 59
Query: 994 RSSTQGKGEFSMDY 1007
+S ++G S+DY
Sbjct: 60 KSISKGYA--SLDY 71
|
LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. Length = 80 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 208 IDSGKTTLTERILFYTGRISEMH------EVRGKDNVGA------VMDSMELERQRGITI 255
+D GK+TL R+L T +I E + + G ++D ++ ER++GITI
Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
A Y + DTPGH +T + D A+L++ A GV QT
Sbjct: 69 DVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT 121
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 502 FIALAFKLEA-GKFGQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDV 558
AL FK+ G + R G L+KG+ + K +V L R +V
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEV 56
Query: 559 EEVLAGDIFALFGV---DCASGDTFVT 582
+E +AGDI + D GDT
Sbjct: 57 DEAVAGDIVGIVLKDKDDIKIGDTLTD 83
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|197906 smart00838, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-07
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
+LEPIM VE++ P E+ G V+ + R G ++G E + I A+
Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAK 46
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 85 |
| >gnl|CDD|202760 pfam03764, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 931
GF++ ++G L+G V V++ L DG H VDS+E +FI AA A K+A +
Sbjct: 67 GFQEAMKEGPLAGEPVRDVKVTLTDGSYHEVDSSEAAFIPAARRAFKEALLKA 119
|
This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Length = 120 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI----- 255
N+G+ H+DSGKT+L + L SE+ A D ++RGIT+
Sbjct: 2 NVGLLGHVDSGKTSLA-KAL------SEIAST-------AAFDKNPQSQERGITLDLGFS 47
Query: 256 -------QSAATYTLWKDHNINI--IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
+ + N I +D PGH + +++D +LV+ A G+Q+
Sbjct: 48 SFEVDKPKHLEDNENPQIENYQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQT 107
Query: 307 QT---LTVNRQMKRYDVPCIAFINKLDRLGADPYRV-INQMR---QKVGHNAAFLQIPI 358
QT L + + + P I +NK+D + + + I +M+ QK PI
Sbjct: 108 QTAECLVIGELLCK---PLIVVLNKIDLIPEEERKRKIEKMKKRLQKTLEKTRLKDSPI 163
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
V+D + ER+RG+TI A + +N IID PGH DF + D A+LV+ A
Sbjct: 59 VLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDA 118
Query: 84 VGGVQSQTLTVNRQMK 99
G V Q +
Sbjct: 119 RDGEFEAGFGVGGQTR 134
|
Length = 428 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 9e-07
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 201 NIGISAHIDSGKTTLTERILFYTG----RISEMHEVRGKD------NVGAVMDSMELERQ 250
NI + H+DSGK+T T +++ G R+ E E + V+D ++ ER+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Query: 251 RGITIQSAATYTLWKDHNI----NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
RGITI A LWK +ID PGH DF + D A+L++ + G
Sbjct: 69 RGITIDIA----LWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG 121
|
Length = 447 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-06
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 28/118 (23%)
Query: 898 RMVLKDGDNHMVDS-------NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEF 950
+ L DG+ VD+ +I +I EPI+ I P E+
Sbjct: 376 EVTLTDGEVIEVDNPSKLPDPGKIE------------------EIEEPIVKATIIVPQEY 417
Query: 951 QGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLND-MFGFAGDLRSSTQGKGEFSMDY 1007
G+V+ L ++ G+ + E + V + E+PL + +F F L+S ++G S+DY
Sbjct: 418 VGAVMELCQEKRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYA--SLDY 473
|
Length = 600 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-06
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV- 572
G + +R G L+KG+ I + T K+ V V + + +M V+E+ AG++ + + G+
Sbjct: 208 GVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDE-VGVFTPKMVPVDELSAGEVGYIIAGIK 266
Query: 573 ---DCASGDTFVTDKNNSIS--LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627
D GDT +T N L P+V + V++ D ++ A+++ D
Sbjct: 267 DVRDARVGDT-ITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDA 325
Query: 628 TFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFKETL 678
+ Y+PE+ + L G +G LH+EI +R+ERE++ ++ P V ++ TL
Sbjct: 326 SL--TYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTL 379
|
Length = 600 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 49/147 (33%), Positives = 62/147 (42%), Gaps = 43/147 (29%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNV-----GAVMDSMELERQRGITIQSAATY 261
H+D GKT+L + I R K NV G GIT Q Y
Sbjct: 257 HVDHGKTSLLDAI-------------R-KTNVAAGEAG------------GIT-QHIGAY 289
Query: 262 TL-WKDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTLTVNRQM 315
+ I +DTPGH FT A+R V D +LV+ A GV QT+
Sbjct: 290 QVETNGGKITFLDTPGHEAFT-----AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHA 344
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQ 342
K VP I INK+D+ GA+P RV +
Sbjct: 345 KAAGVPIIVAINKIDKPGANPDRVKQE 371
|
Length = 746 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 35 GITIQSAATYTL-WKDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQ 88
GIT Q Y + I +DTPGH FT A+R V D +LV+ A GV
Sbjct: 281 GIT-QHIGAYQVETNGGKITFLDTPGHEAFT-----AMRARGAQVTDIVVLVVAADDGVM 334
Query: 89 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQ 125
QT+ K VP I INK+D+ GA+P RV +
Sbjct: 335 PQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQE 371
|
Length = 746 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 207 HIDSGKTTLTERILFYT-----------GRISEMHEVRGKD-NVGAVMDSMELERQRGIT 254
+D GK+TL R+L+ T R S+ +G+ ++ ++D +E ER++GIT
Sbjct: 14 SVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGIT 73
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
I A Y + I DTPGH +T + D AIL++ A GV QT
Sbjct: 74 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQT 127
|
Length = 431 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
VMD ++ ER+RG+TI A + I+D PGH DF + D A+LV+ A
Sbjct: 58 VMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAA 117
Query: 84 --VGGVQSQ---------TLTVNRQMKRYDVPCIAFINKLD 113
GGV Q TL +N Q+ I INK+D
Sbjct: 118 DDAGGVMPQTREHVFLARTLGIN-QL-------IVAINKMD 150
|
Length = 425 |
| >gnl|CDD|214887 smart00889, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 839 EMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH-GFKQMCEKG 887
E E+G L+G V V++ L DG H VDS+E++F AA FK+ K
Sbjct: 70 EALEEGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKPAARRAFKEALLKA 119
|
Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. Length = 120 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-06
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEV 67
QE+ + VMD ++ ER+RG+TI A WK + + I+D PGH DF +
Sbjct: 47 QEKGKASFEFAWVMDRLKEERERGVTIDVA----HWKFETDKYEVTIVDCPGHRDFIKNM 102
Query: 68 ERALRVLDGAILVLCAVGG---VQSQ---------TLTVNRQMKRYDVPCIAFINKLDRL 115
D A+LV+ G VQ Q TL +N+ I INK+D +
Sbjct: 103 ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQ--------LIVAINKMDSV 154
Query: 116 GADPYRVINQMRQKTSRWI 134
D ++++ S I
Sbjct: 155 NYDEEE-FEAIKKEVSNLI 172
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 7 IIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66
I H K ++ G V D + E++RGITI Y +D + ID PGH DF
Sbjct: 9 IDHGKTTLLKALT--GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66
Query: 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF-INKLDRLGADPYRVINQ 125
+ L +D A+LV+ A G+ +QT + + + K DR D R+ +
Sbjct: 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADR--VDEARIEQK 124
Query: 126 MRQ 128
++Q
Sbjct: 125 IKQ 127
|
Length = 447 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D ++ ER++GITI A Y I DTPGH +T + D AIL++ A
Sbjct: 52 LVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDA 111
Query: 84 VGGVQSQT 91
GV QT
Sbjct: 112 RKGVLEQT 119
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 48 KDHNINIIDTPGHVDFTV-----EVERALRVLDGAILVLCAVGG--VQSQTLTVNRQMKR 100
+ ++DTPG +F LR D +LV+ + + L + R++++
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK 104
Query: 101 YDVPCIAFINKLDRLGADPYRVINQMRQK 129
+P I NK+D L + ++ +
Sbjct: 105 EGIPIILVGNKIDLLEEREVEELLRLEEL 133
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|239765 cd04098, eEF2_C_snRNP, eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHG--ILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
EPI VEI+ P + +V ++++R G I + A IP+ + FGF DLR
Sbjct: 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLR 60
Query: 995 SSTQG 999
TQG
Sbjct: 61 VHTQG 65
|
This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 80 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E+ RGITI +A Y H ++ D PGH D+ + +DGAILV+ A G
Sbjct: 46 EKARGITINTAHVEYETANRHYAHV-DCPGHADYIKNMITGAAQMDGAILVVSATDGPMP 104
Query: 90 QT---LTVNRQMKRYDVPCIA-FINKLD 113
QT L + RQ+ VP I F+NK D
Sbjct: 105 QTREHLLLARQV---GVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 31 ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90
E++RG+TI Y D+ + ID PGH F +D A+LV+ A GV +Q
Sbjct: 31 EKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQ 90
Query: 91 TLTVNRQMKRYDVPC-IAFINKLDR 114
T + +P I I K DR
Sbjct: 91 TGEHLAVLDLLGIPHTIVVITKADR 115
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 63
V+D ++ ER+RG+TI + + IID PGH DF
Sbjct: 51 VLDKLKEERERGVTIDVGLAKFETEKYRFTIIDAPGHRDF 90
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E+ RGITI +A Y H +D PGH D+ + +DGAILV+ A G
Sbjct: 56 EKARGITINTAHVEYETANRH-YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 90 QT---LTVNRQMKRYDVPCI-AFINKLD 113
QT + + RQ VP I F+NK+D
Sbjct: 115 QTREHILLARQ---VGVPYIVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|239660 cd03689, RF3_II, RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 519 YMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GVDCAS 576
++R GK +G + +VR K+VR+S + + + E V+E GDI L G
Sbjct: 20 FVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGN-FQI 78
Query: 577 GDTFVTD 583
GDT
Sbjct: 79 GDTLTEG 85
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. Length = 85 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 36/177 (20%)
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN- 268
GK++L +L NVG V G T +
Sbjct: 8 VGKSSLLNALL--------------GQNVGIVSPIP------GTT-RDPVRKEWELLPLG 46
Query: 269 -INIIDTPGHVDFTVE----VERALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+ +IDTPG + VE A +V D +LV+ + + + ++
Sbjct: 47 PVVLIDTPGLDEEGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGL-LRERGK 105
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGI-IDLIQRKAI 376
P + +NK+D + + + R+ +P+ S G ID +++K
Sbjct: 106 PVLLVLNKIDLVPESEEEELLRERKL----ELLPDLPVIAVSALPGEGIDELRKKIA 158
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI-QSAAT 260
I + + +GKTT + S+ V A S+ + +R T+ +
Sbjct: 13 IVVIGPVGAGKTTFVRAL-------SDKPLVI----TEADASSVSGKGKRPTTVAMDFGS 61
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAI-LVLCAVGGVQSQTLTVNRQMK--- 316
L +D +++ TPG F E R GAI LV + T +
Sbjct: 62 IELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP----ITFHAEEIIDFLT 117
Query: 317 -RYDVPCIAFINKLDRLGADPYRVINQM 343
R +P + INK D A P I +
Sbjct: 118 SRNPIPVVVAINKQDLFDALPPEKIREA 145
|
Length = 187 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 26 DSMELERQRGITIQSAATYT-LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
D + E++RGITI Y L + ID PGH F + +D +LV+ A
Sbjct: 25 DRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAAD 84
Query: 85 GGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQ 128
G+ QT ++ + + + K D D R+ +
Sbjct: 85 EGIMPQTREHLEILELLGIKKGLVVLTKADL--VDEDRLELVEEE 127
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 43/145 (29%), Positives = 58/145 (40%), Gaps = 41/145 (28%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG-ITIQSAATY---- 261
H+D GKTTL ++I RG + ++ G IT AT
Sbjct: 14 HVDHGKTTLLDKI-------------RG---------TAVAAKEAGGITQHIGATEVPID 51
Query: 262 -------TLWKDHNINI-------IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 307
L K I + IDTPGH FT +R + D AILV+ G Q Q
Sbjct: 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQ 111
Query: 308 TLTVNRQMKRYDVPCIAFINKLDRL 332
T+ +KR P + NK+DR+
Sbjct: 112 TIEAINILKRRKTPFVVAANKIDRI 136
|
Length = 586 |
| >gnl|CDD|239662 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-05
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 521 RCYQGKLRKGEMIYNVRTDKKV---RVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS- 576
R ++G ++ G+ + V+ D K+ ++++L + +VEE AGDI A+ G++ +
Sbjct: 21 RIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80
Query: 577 GDTFVTD 583
GDT + D
Sbjct: 81 GDT-ICD 86
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 86 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKTTL ++I E + ++GA M++ L K
Sbjct: 12 HVDHGKTTLLDKIRGSAVAKREAGGI--TQHIGATEIPMDVIEG--------ICGDLLKK 61
Query: 267 HNINI-------IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 319
I + IDTPGH FT +R + D AIL++ G + QT ++ Y
Sbjct: 62 FKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK 121
Query: 320 VPCIAFINKLDRL 332
P + NK+DR+
Sbjct: 122 TPFVVAANKIDRI 134
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD-WVTIYAEIPLND-MFGFAG 991
+I EP + I TP E+ G+V+ L ++ GI E D V + E+PL + +F F
Sbjct: 403 EIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFD 462
Query: 992 DLRSSTQGKGEFSMDY--SRYSPA 1013
L+S + KG S DY Y +
Sbjct: 463 KLKSIS--KGYASFDYEFIGYRES 484
|
Length = 603 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D+ E+ RGITI +A Y H ++ D PGH D+ + +DGAILV+ A
Sbjct: 50 IDNAPEEKARGITINTAHVEYETENRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQT---LTVNRQMKRYDVPCI-AFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 109 TDGPMPQTREHILLARQV---GVPYIVVFLNKCD 139
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ ER RGITI +A ++ + +D PGH D+ + +DGAILV+
Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 178
Query: 85 GGVQSQTLTVNRQMKRYDVP-CIAFINKLDRL 115
G QT K+ VP + F+NK D++
Sbjct: 179 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210
|
Length = 478 |
| >gnl|CDD|239681 cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 1e-04
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQ--GNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
EPI + I P E+ G+V+ + KR G + +G + + +IP + GF +
Sbjct: 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFL 59
Query: 995 SSTQGKGEFSMDYSRYSP 1012
+ T+G G + + Y P
Sbjct: 60 TDTRGTGIMNHVFDGYEP 77
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 79 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 861 GDNHMVDS-------NEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNE 913
G N +VD NEI + A GF+ ++G L+ + G+ + D H ++
Sbjct: 643 GPNMVVDMCKGVQYLNEIKDSVVA-GFQWATKEGALAEENMRGICFEVCDVVLH---ADA 698
Query: 914 I-----SFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGN 968
I I A + + ++LEP+ VEI P + G + +++ ++ G +
Sbjct: 699 IHRGGGQIIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 758
Query: 969 EGK--DDWVTIYAEIPLNDMFGFAGDLRSSTQGK 1000
+ I A +P+ + FGF+G LR++T G+
Sbjct: 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792
|
Length = 843 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79
V+D ++ ER+RGITI A LWK + IID PGH DF + D AIL
Sbjct: 59 VLDKLKAERERGITIDIA----LWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAIL 114
Query: 80 VLCAVGG 86
V+ + G
Sbjct: 115 VVASTAG 121
|
Length = 446 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 718 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFIL 777
FID T G + II+GF++ ++G L+ V GV++ L D H D
Sbjct: 545 FIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHE-D-------- 595
Query: 778 AAH-G------AMKQAYEEGVWQ----ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQG 826
A H G A++ A + +LEPI V+I+ P ++ G+V + R G +
Sbjct: 596 AIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILD 655
Query: 827 NEGKDDWVTIYAE 839
E + D I AE
Sbjct: 656 MEQEGDMAIIEAE 668
|
Length = 731 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLND-MFGFAG 991
+ EP + I TP E+ G ++ L ++ G+ E D + V + E+PL + ++ F
Sbjct: 397 HVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFD 456
Query: 992 DLRSSTQGKGEFSMDY 1007
L+S + +G S DY
Sbjct: 457 KLKSIS--RGYASFDY 470
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E++RGITI +A Y K H ++ D PGH D+ + +DGAILV+ A G
Sbjct: 56 EKERGITINTAHVEYETEKRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 90 QT---LTVNRQMKRYDVPCI-AFINKLD 113
QT + + RQ+ VP + F+NK+D
Sbjct: 115 QTREHILLARQV---GVPYLVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 113
IDTPGH FT +R + D AIL++ G + QT ++ Y P + NK+D
Sbjct: 73 FIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKID 132
Query: 114 RL 115
R+
Sbjct: 133 RI 134
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 74/326 (22%)
Query: 47 WKDHNINIIDTPGHVDFTVE------VERALRVLDGA---ILVLCAVGGVQSQTLTVNRQ 97
W +IDT G D + E+AL ++ A + V+ G+ + +
Sbjct: 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKI 107
Query: 98 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157
++R P I +NK+D L A+ + SL +P+ ISA
Sbjct: 108 LRRSKKPVILVVNKIDNLKAEE--------LAYEFY----SLGFGEPVP------ISAEH 149
Query: 158 DSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTE 217
G L + +L +E E + + I+ I I + GK++L
Sbjct: 150 GRGIGDLLDAVLEL------------LPPDEEEEEEEETDPIK-IAIIGRPNVGKSSLIN 196
Query: 218 RILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG- 276
IL E R ++ + G T S +IDT G
Sbjct: 197 AIL---------GEER------VIVSDIA-----GTTRDSIDIEFERDGRKYVLIDTAGI 236
Query: 277 ----HVDFTVE---VERALRVLDGA---ILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 326
+ +VE V R L+ ++ A +LV+ A G+ Q L + ++ + +
Sbjct: 237 RRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVV 296
Query: 327 NKLDRLGADPYR---VINQMRQKVGH 349
NK D + D ++R+K+
Sbjct: 297 NKWDLVEEDEATMEEFKKKLRRKLPF 322
|
Length = 444 |
| >gnl|CDD|239661 cd03690, Tet_II, Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 501 PFIALAFKLEAGKFGQ-LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 559
FK+E G+ L Y+R Y G LR + + V ++K++++ L ++ E+ +
Sbjct: 3 ELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVR-VNREEKIKITELRVFNNGEVVTAD 61
Query: 560 EVLAGDIFALFGVD 573
V AGDI L G+
Sbjct: 62 TVTAGDIAILTGLK 75
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 85 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E+ RGITI +A Y K H ++ D PGH D+ + +DG ILV+ A G
Sbjct: 105 EKARGITIATAHVEYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 163
Query: 90 QTLTVNRQMKRYDVPCIA-FINKLD 113
QT ++ VP + F+NK+D
Sbjct: 164 QTKEHILLARQVGVPSLVVFLNKVD 188
|
Length = 447 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D ++ ER++GITI A Y + DTPGH +T + D A+L++ A
Sbjct: 54 LVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDA 113
Query: 84 VGGVQSQT 91
GV QT
Sbjct: 114 RKGVLEQT 121
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|238842 cd01693, mtEFG2_like_IV, mtEF-G2 domain IV | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 10/122 (8%)
Query: 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF-IDETVGTNVPKP 730
+A++ET+++P +K G V + P S++ + + + K
Sbjct: 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSAIEVLLKR 60
Query: 731 FLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSN-EISFILAA-----HGAMK 784
A+ G +G L G V V + L + + + I A A+K
Sbjct: 61 IQEAVENGVHSALLQGPLLGFPVQDVAITL---HSLTIGPGTSPTMISACASQCVQKALK 117
Query: 785 QA 786
A
Sbjct: 118 SA 119
|
This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. Length = 120 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 6e-04
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 521 RCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN---EMEDVEEVLAGDIFALFGVDCASG 577
R +GK++ + + + ++ K R +++ ++ + E + + AGDI A+ G+ +
Sbjct: 225 RIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNI 284
Query: 578 DTFVTDKNNSISLESIYVADPVVSM----SIKAVNNKDRDNFS--KAVQRFTKE---DPT 628
V D N +L ++ V +P VSM + K+ + + + R KE +
Sbjct: 285 SDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVA 344
Query: 629 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE 676
++ VSG GELHL + + M RE + + +PKV F+E
Sbjct: 345 LRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFRE 391
|
Length = 607 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQ--GNEGKDDWVTIYAEIPLNDMFGFAG 991
EP V I P E QG+V+ + +R G ++ +GK V + IP + GF
Sbjct: 395 VKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGK-GRVRLEFVIPARGLIGFRT 453
Query: 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDR 1020
+ + T+G G + + Y P E+ R
Sbjct: 454 EFLTMTRGTGIMNHSFDHYRPVKGEIGGR 482
|
Length = 603 |
| >gnl|CDD|202760 pfam03764, EFG_IV, Elongation factor G, domain IV | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 839 EMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH-GFKQMCEKG 887
E ++G L+G V V++ L DG H VDS+E +FI AA FK+ K
Sbjct: 70 EAMKEGPLAGEPVRDVKVTLTDGSYHEVDSSEAAFIPAARRAFKEALLKA 119
|
This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. Length = 120 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWVTIYAEIPLNDMFGFAGD 992
+ LEPI + I P E G+V+ + KR G + E + + +IP + GF +
Sbjct: 391 KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTE 450
Query: 993 LRSSTQGKGEFSMDYSRYSPALPEVQDR 1020
+ T+G G + + Y P E++ R
Sbjct: 451 FLTDTRGTGIMNHVFDEYEPWKGEIETR 478
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E+ RGITI ++ Y H ++ D PGH D+ + +DGAILV+ A G
Sbjct: 56 EKARGITINTSHVEYETANRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVSAADGPMP 114
Query: 90 QT---LTVNRQMKRYDVPCI-AFINKLD 113
QT + + RQ+ VP I F+NK D
Sbjct: 115 QTREHILLARQV---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 26 DSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
DS E+ RGITI +A Y H ++ D PGH D+ + +DGAILV+ A
Sbjct: 51 DSAPEEKARGITINTAHVEYETENRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVSAA 109
Query: 85 GGVQSQT---LTVNRQMKRYDVPCI-AFINKLDRL 115
G QT + + +Q+ VP I F+NK D++
Sbjct: 110 DGPMPQTKEHILLAKQV---GVPNIVVFLNKEDQV 141
|
Length = 409 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 22/140 (15%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D +E ER++GITI A Y + I DTPGH +T + D AIL++ A
Sbjct: 60 LVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA 119
Query: 84 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRV-INQM-----RQKTSRWISNE 137
GV QT +R+ +FI L LG V +N+M ++ I +
Sbjct: 120 RKGVLEQT-------RRH-----SFIASL--LGIRHVVVAVNKMDLVDYSEEVFEAIVAD 165
Query: 138 --SLSEHKPIEYIRNIGISA 155
+ + ++ +R I ISA
Sbjct: 166 YLAFAAQLGLKDVRFIPISA 185
|
Length = 431 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 55 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
IDTPGH FT +R + D AILV+ G Q QT+ +KR P + NK+DR
Sbjct: 76 IDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDR 135
Query: 115 L 115
+
Sbjct: 136 I 136
|
Length = 586 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 41/157 (26%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY 261
I + H+D GKTTL + I TG V A D + E++RG+TI Y
Sbjct: 3 IATAGHVDHGKTTLLQAI---TG-------------VNA--DRLPEEKKRGMTIDLG--Y 42
Query: 262 TLWKDHN---INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--------LT 310
W + + ID PGH F + + +D A+LV+ GV +QT LT
Sbjct: 43 AYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT 102
Query: 311 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347
N + +A + K DR D R I ++R++V
Sbjct: 103 GNPMLT------VA-LTKADR--VDEAR-IAEVRRQV 129
|
Length = 614 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 149 RNIGISAHIDSGKTTLTERILFYTGRISE----------MHETSRWISNE 188
R I +H D+GKTTLTE++L + G I E H S W+ E
Sbjct: 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIE 62
|
Length = 528 |
| >gnl|CDD|238838 cd01680, EFG_like_IV, Elongation Factor G-like domain IV | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 849 SRVAGVRMVLKDGDNHMVDSNEISFILAA-HGFKQMCEKGCLSGSRVAGVRMVLKDGDNH 907
R +GVR+V + + A G + C G L+G + VR+ + D H
Sbjct: 36 ERGSGVRVVDPVDEELLP----AELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYH 91
Query: 908 MVDSNEISFILAAHGAMKQAYEEG 931
S E F AA A + A ++
Sbjct: 92 EGVSTEAGFRAAAGRAFESAAQKA 115
|
This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. Length = 116 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
E+ RGITI +A Y K H ++ D PGH D+ + +DGAILV+ A G
Sbjct: 56 EKARGITINTAHVEYETEKRHYAHV-DCPGHADYVKNMITGAAQMDGAILVVSAADGPMP 114
Query: 90 QT---LTVNRQMKRYDVPCI-AFINKLD 113
QT + + RQ+ VP I F+NK D
Sbjct: 115 QTREHILLARQV---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 51 NINIIDTPGHVDFTVE----VERALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDV 103
+ +IDTPG + VE A +V D +LV+ + + + ++
Sbjct: 47 PVVLIDTPGLDEEGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGL-LRERGK 105
Query: 104 PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145
P + +NK+D + + + R+ E L + I
Sbjct: 106 PVLLVLNKIDLVPESEEEELLRERKL-------ELLPDLPVI 140
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 113
IDTPGH FT +R + D A+LV+ G + QT+ +++Y P + NK+D
Sbjct: 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKID 589
Query: 114 RL 115
+
Sbjct: 590 LI 591
|
Length = 1049 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 330
IDTPGH FT +R + D A+LV+ G + QT+ +++Y P + NK+D
Sbjct: 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKID 589
Query: 331 RL 332
+
Sbjct: 590 LI 591
|
Length = 1049 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 208 IDSGKTTLTERILFYTGRISEMH----EVRGKDNVGA---------VMDSMELERQRGIT 254
+D GK+TL R+L+ + I E E K VG ++D + ER++GIT
Sbjct: 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKK-VGTQGDEIDLALLVDGLAAEREQGIT 91
Query: 255 IQSAATY--TLWKDHNINII-DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
I A Y T I+ DTPGH +T + D AI+++ A GV +QT
Sbjct: 92 IDVAYRYFAT---PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT 145
|
Length = 632 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1043 | |||
| KOG0465|consensus | 721 | 100.0 | ||
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 100.0 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 100.0 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 100.0 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 100.0 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 100.0 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 100.0 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 100.0 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 100.0 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 100.0 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 100.0 | |
| KOG0469|consensus | 842 | 100.0 | ||
| KOG0464|consensus | 753 | 100.0 | ||
| KOG0468|consensus | 971 | 100.0 | ||
| KOG0467|consensus | 887 | 100.0 | ||
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 100.0 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 100.0 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 100.0 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 100.0 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 100.0 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 100.0 | |
| KOG0462|consensus | 650 | 100.0 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 100.0 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 100.0 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 100.0 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 100.0 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 100.0 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 100.0 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 100.0 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 100.0 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 100.0 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 100.0 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 100.0 | |
| CHL00071 | 409 | tufA elongation factor Tu | 100.0 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 100.0 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.98 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.97 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.97 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.97 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.97 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.97 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.97 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.97 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.97 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.97 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.96 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.96 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.96 | |
| KOG0460|consensus | 449 | 99.96 | ||
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.96 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.95 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.95 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.95 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.95 | |
| KOG0469|consensus | 842 | 99.94 | ||
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.94 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.94 | |
| KOG0458|consensus | 603 | 99.94 | ||
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.94 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.93 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.92 | |
| cd01683 | 178 | EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part | 99.92 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.92 | |
| KOG0465|consensus | 721 | 99.92 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.92 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.91 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.91 | |
| KOG1145|consensus | 683 | 99.91 | ||
| KOG0468|consensus | 971 | 99.91 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.9 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.89 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.89 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.88 | |
| cd01681 | 177 | aeEF2_snRNP_like_IV This family represents domain | 99.88 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.87 | |
| cd04098 | 80 | eEF2_C_snRNP eEF2_C_snRNP: This family includes a | 99.87 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.87 | |
| PF03764 | 120 | EFG_IV: Elongation factor G, domain IV; InterPro: | 99.87 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.87 | |
| KOG0467|consensus | 887 | 99.87 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.86 | |
| KOG0461|consensus | 522 | 99.86 | ||
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.86 | |
| KOG0459|consensus | 501 | 99.85 | ||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.85 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.85 | |
| cd01684 | 115 | Tet_like_IV EF-G_domain IV_RPP domain is a part of | 99.85 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.85 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.85 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.83 | |
| smart00838 | 85 | EFG_C Elongation factor G C-terminus. This domain | 99.83 | |
| PF00679 | 89 | EFG_C: Elongation factor G C-terminus; InterPro: I | 99.83 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.82 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.82 | |
| cd01434 | 116 | EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to do | 99.81 | |
| cd04097 | 78 | mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo | 99.81 | |
| cd03711 | 78 | Tet_C Tet_C: C-terminus of ribosomal protection pr | 99.8 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.8 | |
| cd03713 | 78 | EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C- | 99.79 | |
| cd01693 | 120 | mtEFG2_like_IV mtEF-G2 domain IV. This subfamily i | 99.78 | |
| cd01680 | 116 | EFG_like_IV Elongation Factor G-like domain IV. Th | 99.78 | |
| cd04096 | 80 | eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r | 99.78 | |
| PF14492 | 75 | EFG_II: Elongation Factor G, domain II; PDB: 1WDT_ | 99.77 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.77 | |
| cd01514 | 79 | Elongation_Factor_C Elongation factor G C-terminus | 99.76 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.76 | |
| cd03710 | 79 | BipA_TypA_C BipA_TypA_C: a C-terminal portion of B | 99.76 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.75 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.75 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.75 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.74 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.74 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.74 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.73 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.73 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.73 | |
| KOG0462|consensus | 650 | 99.73 | ||
| KOG0463|consensus | 641 | 99.73 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.73 | |
| cd03709 | 80 | lepA_C lepA_C: This family represents the C-termin | 99.73 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.72 | |
| KOG0458|consensus | 603 | 99.72 | ||
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.71 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.71 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.71 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.71 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.71 | |
| KOG1144|consensus | 1064 | 99.71 | ||
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.7 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.7 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.69 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.69 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.69 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.69 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.69 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.69 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.68 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.67 | |
| KOG1143|consensus | 591 | 99.67 | ||
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.67 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.66 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.66 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.66 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.66 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.66 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.66 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.65 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.65 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 99.65 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.64 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.64 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.63 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.63 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.63 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.63 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.63 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.62 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 99.62 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.61 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.6 | |
| KOG0084|consensus | 205 | 99.6 | ||
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.6 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.6 | |
| cd04091 | 81 | mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri | 99.6 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.6 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.6 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.6 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.59 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.59 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.59 | |
| KOG0092|consensus | 200 | 99.58 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.58 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.58 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.58 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 99.57 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.57 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.57 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.57 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.57 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 99.57 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.57 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.57 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.56 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.56 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.56 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.56 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.56 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.56 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.56 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.55 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.55 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.55 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.55 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.55 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.55 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.55 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.54 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.54 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.54 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.54 | |
| KOG0094|consensus | 221 | 99.54 | ||
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.54 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.54 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.54 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.53 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.53 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.53 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.53 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.53 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.53 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.52 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.52 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.52 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.52 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.51 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.51 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.51 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.51 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.51 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.5 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.5 | |
| KOG1145|consensus | 683 | 99.5 | ||
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.5 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.5 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.5 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.5 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.5 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.49 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.49 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.49 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.49 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.49 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.49 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.49 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.49 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.49 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.49 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.49 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.49 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.49 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.48 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.48 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.48 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.48 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.48 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.48 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.48 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.48 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.48 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.48 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.48 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.48 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.48 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.48 | |
| KOG0093|consensus | 193 | 99.48 | ||
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.48 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.48 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.48 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.48 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.48 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.48 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.47 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 99.47 | |
| KOG0078|consensus | 207 | 99.47 | ||
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.47 | |
| cd01683 | 178 | EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part | 99.47 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.47 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.47 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.47 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.47 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.47 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.47 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.47 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.47 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.47 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.47 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.47 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.47 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.47 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.46 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.46 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.46 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.46 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.46 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.46 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.46 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.46 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.46 | |
| cd03699 | 86 | lepA_II lepA_II: This subfamily represents the dom | 99.46 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.46 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.46 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.46 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.46 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.46 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.46 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.45 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.45 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.45 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.45 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.45 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.45 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.45 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.45 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.44 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.44 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.44 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.44 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.44 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.44 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.44 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.44 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.44 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.44 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.44 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.44 | |
| KOG1423|consensus | 379 | 99.44 | ||
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.44 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.44 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.43 | |
| KOG0394|consensus | 210 | 99.43 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.43 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.43 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.43 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.43 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.43 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.43 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.43 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.43 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.43 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.43 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.43 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.43 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.43 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.43 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.43 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.42 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.42 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.42 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.42 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.42 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.42 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.42 | |
| KOG0466|consensus | 466 | 99.42 | ||
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.42 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.42 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.42 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.42 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.42 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.42 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.42 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.42 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.42 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.42 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.42 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.41 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.41 | |
| cd03700 | 93 | eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami | 99.41 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.41 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.41 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.41 | |
| KOG0080|consensus | 209 | 99.41 | ||
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.41 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.41 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.41 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.41 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.41 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.41 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.4 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.4 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.4 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.4 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.4 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.4 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.4 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.4 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.4 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.4 | |
| KOG1144|consensus | 1064 | 99.4 | ||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.4 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.4 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.4 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.4 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.4 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.4 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.4 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.39 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.39 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.39 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.39 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.39 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.39 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.39 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.39 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.39 | |
| KOG0098|consensus | 216 | 99.38 | ||
| PLN03118 | 211 | Rab family protein; Provisional | 99.38 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.38 | |
| cd04090 | 94 | eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina | 99.38 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.38 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.38 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.38 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.38 | |
| KOG0087|consensus | 222 | 99.37 | ||
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.37 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.37 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.37 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.37 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.37 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.37 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.37 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.37 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.37 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.37 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.37 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.37 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.36 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.36 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.36 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.36 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.36 | |
| cd01681 | 177 | aeEF2_snRNP_like_IV This family represents domain | 99.36 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.36 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.36 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.36 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.36 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.35 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.35 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.35 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.35 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.35 | |
| KOG0464|consensus | 753 | 99.35 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.35 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.35 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.35 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.35 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.35 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.34 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.34 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.34 | |
| KOG0075|consensus | 186 | 99.34 | ||
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.34 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.34 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.34 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.34 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.34 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.34 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.33 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.33 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.33 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.33 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.32 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.32 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.32 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.32 | |
| KOG0070|consensus | 181 | 99.32 | ||
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.32 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.32 | |
| KOG0459|consensus | 501 | 99.32 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.31 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.31 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.31 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.31 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.31 | |
| KOG0095|consensus | 213 | 99.3 | ||
| KOG1489|consensus | 366 | 99.3 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.3 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.3 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.3 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.29 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.29 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.29 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.29 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.29 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.28 | |
| KOG0079|consensus | 198 | 99.28 | ||
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.28 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.28 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.28 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.27 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.27 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.27 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.27 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.27 | |
| KOG0086|consensus | 214 | 99.27 | ||
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.27 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.27 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.26 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.26 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.26 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.25 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.25 | |
| KOG1532|consensus | 366 | 99.25 | ||
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.25 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.25 |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-144 Score=1193.44 Aligned_cols=687 Identities=62% Similarity=1.014 Sum_probs=653.5
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+.+++|||++++|.++||||++++++++.|.+...++++++ .+.+|+++.|++||||++++...+.|+++++|+|
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiI 109 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---GATMDSMELERQRGITIQSAATYFTWRDYRINII 109 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccC---ceeeehHHHHHhcCceeeeceeeeeeccceeEEe
Confidence 4556689999999999999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||+||.-|+++||++.|+||+|+|++.|++.||..+|+++.++++|.+.|+||||+.++++..++++++.+++.+++
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a 189 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPA 189 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
.+|+|++..+.|+|++|+++.++++|++++|......+||+++.+.+.++|++|+|.|++.|++|+|.||++..++.+++
T Consensus 190 ~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l 269 (721)
T KOG0465|consen 190 VVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL 269 (721)
T ss_pred eeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
..++|++++.+.|+|||||||++|.||++|||++++|||+|.+..++...+ .+..+++.+.+.++.+ ||++++||+..
T Consensus 270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~-Pfv~LAFKle~ 348 (721)
T KOG0465|consen 270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKD-PFVALAFKLEE 348 (721)
T ss_pred HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCC-ceeeeEEEeee
Confidence 999999999999999999999999999999999999999999998887763 3333466777664344 99999999999
Q ss_pred cCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEecCCCCccccc
Q psy11896 512 GKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 512 d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+++|.+.|+|||+|+|++||.+||.++++++|+.+|+.||++..++|+++.|||||++.|+|+.+|||++...+....++
T Consensus 349 g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidcasGDTftd~~~~~~~m~ 428 (721)
T KOG0465|consen 349 GRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDCASGDTFTDKQNLALSME 428 (721)
T ss_pred cCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeeccccccCceeccCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999993336678889
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
.+.+|+||++++|+|.+.+|.++|.+||.++.+|||||+++.|.|++|++|+|||||||||..+||++|||++++++.|+
T Consensus 429 si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~ 508 (721)
T KOG0465|consen 429 SIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQ 508 (721)
T ss_pred eeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+.++++++.||||+||.|||+++...++|++++.+..++|.++++|+.+|++|++++++||.++|++|||+|.
T Consensus 509 VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~gh 588 (721)
T KOG0465|consen 509 VAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGH 588 (721)
T ss_pred eeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999987888999999999999999999999999999999999999
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
|+.++++.|.||++|.+||
T Consensus 589 pl~~~r~~l~Dga~h~vds------------------------------------------------------------- 607 (721)
T KOG0465|consen 589 PLSNLRIVLQDGAHHPVDS------------------------------------------------------------- 607 (721)
T ss_pred cccceEEEEecCCcCcccc-------------------------------------------------------------
Confidence 9999887777766665554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
T Consensus 608 -------------------------------------------------------------------------------- 607 (721)
T KOG0465|consen 608 -------------------------------------------------------------------------------- 607 (721)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
++.+|+.|++.|+++||++|+|+||||||.|+|++|+|++|.|+++|++|+|.|.+.+..++.++|+|.+|+++||||++
T Consensus 608 ~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~~ti~A~VPL~~mfgYss 687 (721)
T KOG0465|consen 608 SELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSEDYKTIKAEVPLNEMFGYSS 687 (721)
T ss_pred cHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCceEEEEecccHHHHhhhhh
Confidence 44456666777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
+|||+|+|+|.|+|+|++|+++|.++|++++.+
T Consensus 688 ~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 688 ELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred hhhhhhcCcceEEEeecccCCCchHHHHHhhcc
Confidence 999999999999999999999999999998864
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-134 Score=1196.80 Aligned_cols=686 Identities=48% Similarity=0.765 Sum_probs=644.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDt 274 (1043)
.+++|||+|+||.|||||||+++|++++|.+++.|++++| ++++|++++|++||||+.++.+++.|++ ++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCC
Confidence 6789999999999999999999999999999999999999 6789999999999999999999999996 99999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||+||..++.++++++|+||+|+||.+|+++||+.+|+++.++++|+++|+||||+.++++....+++..+|+.++.++
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
++|++..+.|.|++|++.+.++.|.. |..+...++|++..+...++|..+++.++|.|++++++|+++..++.+++..
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999975 5555558899988899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
+|++.+..+.++|++||||.+|.|++.|||++++++|+|.+.+.+.....+...+.... +.+.++|++++|||+..|++
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~-~~~~e~p~~a~vfKi~~d~~ 320 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLR-KASDEGPLSALVFKIMTDPF 320 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcc-cCCCCCceEEEEEEeEecCC
Confidence 99999999999999999999999999999999999999998876644432222222222 43478999999999999999
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccccC
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLES 592 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~~ 592 (1043)
|+++|+|||||+|++||.++|.+.+++++|.+|+.++|++++++++++||||+++.|+ ++.+|||++ +.+.+..++.
T Consensus 321 ~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~-~~~~~v~~~~ 399 (697)
T COG0480 321 VGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLC-DENKPVILES 399 (697)
T ss_pred CCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeee-cCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 778999999 4445678899
Q ss_pred CCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCee
Q psy11896 593 IYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672 (1043)
Q Consensus 593 ~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V 672 (1043)
+.+|+|+++++|+|++++|++||.++|++|++|||++++..|+||||++|+|||||||||+++||+++||+++.+++|+|
T Consensus 400 ~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV 479 (697)
T COG0480 400 MEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQV 479 (697)
T ss_pred ccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccc
Q psy11896 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSR 752 (1043)
Q Consensus 673 ~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~p 752 (1043)
+|||||++.++..++|++|+||++||+++++.+||+++ +.++.|.+++.++.+|++|++++++||+|++++|||+|||
T Consensus 480 ~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~--~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~p 557 (697)
T COG0480 480 AYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLED--GSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYP 557 (697)
T ss_pred EEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCC--CcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCc
Confidence 99999999988889999999999999999999999875 4589999999999999999999999999999999999999
Q ss_pred eeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC
Q psy11896 753 VAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD 832 (1043)
Q Consensus 753 v~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~ 832 (1043)
|+|++++|.||++|++
T Consensus 558 v~dvkv~L~dgs~h~v---------------------------------------------------------------- 573 (697)
T COG0480 558 VVDVKVTLLDGSYHEV---------------------------------------------------------------- 573 (697)
T ss_pred eEeeEEEEEcCccccC----------------------------------------------------------------
Confidence 9999977777666644
Q ss_pred ceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCC
Q psy11896 833 WVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSN 912 (1043)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~ 912 (1043)
||+
T Consensus 574 -----------------------------------------------------------------------------dss 576 (697)
T COG0480 574 -----------------------------------------------------------------------------DSS 576 (697)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 455
Q ss_pred hhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC--CcEEEEEEechhhhcCch
Q psy11896 913 EISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 913 ~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~ 990 (1043)
+++|++|++.||++|+++|+|+||||||.|+|++|++++|+||++|++|||+|++++..+ ++++|+|++|++|||||+
T Consensus 577 ~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya 656 (697)
T COG0480 577 EMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYA 656 (697)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccch
Confidence 667777788888889999999999999999999999999999999999999999999984 479999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHHHHHHhcCC
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQEATNP 1031 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1043)
++|||.|||+|+|+|+|+||+++|..++++++.+.|+++|+
T Consensus 657 ~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 657 TDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKGL 697 (697)
T ss_pred hhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999875
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-121 Score=1118.65 Aligned_cols=683 Identities=46% Similarity=0.767 Sum_probs=628.3
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++||||+|+||+|+|||||+++|++.++.+...+.++++ .+++|+.+.|++||+|+++....+.|++++++|+|
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liD 81 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKDHRINIID 81 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEe
Confidence 356789999999999999999999999999988877777777 57899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++++|+||.+|++.||+.+|+++.+.++|+++|+||||+.++++.+.++++++.++....+
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVP 161 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeeccccCCCeeEEEEcccceeEeec-CCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFE-GPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
.++|+....+|.|++|++....+.|. ...|..+...++|....+.+.++|++|+|.+++.||++|++||++..++.+++
T Consensus 162 ~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l 241 (693)
T PRK00007 162 IQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEI 241 (693)
T ss_pred EEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHH
Confidence 99999999999999999999999995 23466667778898888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
+.++++++..+.++|||||||++|.|++.|||+|++++|+|.+++...... ..........|+ +++|++++|||+.+
T Consensus 242 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~a~VfK~~~ 319 (693)
T PRK00007 242 KAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKAS--DDEPFSALAFKIMT 319 (693)
T ss_pred HHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCC--CCCCeEEEEEEeee
Confidence 999999999999999999999999999999999999999998765432110 111134456777 89999999999999
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
|++ |+++|+|||||+|++||.|++.+++++++|.+||.++|++..+++++.|||||++.|+ ++.+||||+ +...+..
T Consensus 320 d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~-~~~~~~~ 398 (693)
T PRK00007 320 DPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLC-DEKNPII 398 (693)
T ss_pred cCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEee-CCCCccc
Confidence 998 9999999999999999999999888889999999999999999999999999999999 788999998 5555667
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++.+|+|+++++|+|.++.|.++|.++|++|.+|||++++.+|++|||++|+|+||||||++++||+++|++++++++
T Consensus 399 l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~ 478 (693)
T PRK00007 399 LESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGK 478 (693)
T ss_pred cCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecC
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 670 p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|+|+|||||+++++..++|++|+||++||++++++++|++. +.++.|.++++++.+|++|+++|++||+|++.+|||+
T Consensus 479 p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~--~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~ 556 (693)
T PRK00007 479 PQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEP--GKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLA 556 (693)
T ss_pred CEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCC--CCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999988888999999999999999999999875 5678999999999999999999988888888887777
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
|+||+||+|+|.||++
T Consensus 557 g~pv~~v~v~l~d~~~---------------------------------------------------------------- 572 (693)
T PRK00007 557 GYPVVDVKVTLFDGSY---------------------------------------------------------------- 572 (693)
T ss_pred CCceeeEEEEEEeccc----------------------------------------------------------------
Confidence 7777777766665554
Q ss_pred CCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccC
Q psy11896 830 KDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV 909 (1043)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~ 909 (1043)
|++
T Consensus 573 -----------------------------------------------------------------------------~~~ 575 (693)
T PRK00007 573 -----------------------------------------------------------------------------HDV 575 (693)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 444
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCc
Q psy11896 910 DSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGF 989 (1043)
Q Consensus 910 ~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~ 989 (1043)
|+++++|+.|+++||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|.+|++|+|||
T Consensus 576 ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~ 655 (693)
T PRK00007 576 DSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGY 655 (693)
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCCcEEEEEEcCHHHhhcc
Confidence 55666778889999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred hHHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 990 AGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 990 ~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+++||++|+|+|+|+|.|+||+++|++++++++.++
T Consensus 656 ~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 691 (693)
T PRK00007 656 ATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKR 691 (693)
T ss_pred HHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHh
Confidence 999999999999999999999999999999999764
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-120 Score=1114.77 Aligned_cols=682 Identities=46% Similarity=0.762 Sum_probs=629.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.++||||+|+||+|+|||||+++|++.++.+.+.+.++++ .+++|+++.|++||+|++.....+.|++++++||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDT 80 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKGHRINIIDT 80 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcC
Confidence 45679999999999999999999999999988877777776 568999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++.++++.+|++++|+|+.+|++.||+.+|+++.+.++|+++|+||||+.+++..+.++++++.++....+.
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPI 160 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999988899
Q ss_pred eeccccCCCeeEEEEcccceeEeecC-CCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
++|+....+|.|++|++.+..+.|.. ..|..+...++|.++.+++.++|++|+|.+++.||+++++||++..++.++++
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999988853 24566677889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++||+||||.+|.|++.|||+|++++|+|.+++..+.............|+ +++|++++|||+++|+
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~--~~~pl~a~VfK~~~d~ 318 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPAS--DDEPFAALAFKIMTDP 318 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccC--CCCCeEEEEEEeeeCC
Confidence 99999999999999999999999999999999999999998765544322122234567777 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|++||.|++.++++++++.+||.++|++..++++++||||++|.|+ ++++||||+ +...+..++
T Consensus 319 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~l~ 397 (691)
T PRK12739 319 FVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLC-DEKAPIILE 397 (691)
T ss_pred CCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEe-CCCCccccC
Confidence 8 9999999999999999999999888899999999999999999999999999999999 789999998 455566778
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.+++|+++|.++|++|.++||+|++.+|++|||++|+|+||||||++++||+++|++++++++|.
T Consensus 398 ~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~ 477 (691)
T PRK12739 398 SMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQ 477 (691)
T ss_pred CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||++.++..++|++|+||++||++++++++|++. +.++.|.+++.++.+|++|+++|++||+|++.+|||+|+
T Consensus 478 V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~--~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~ 555 (691)
T PRK12739 478 VAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEE--GKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGY 555 (691)
T ss_pred EEEeeccCCcccccceeccccCCCCceeEEEEEEEECCC--CCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999988889999999999999999999999875 468999999999999999999998888888888777777
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.||++|
T Consensus 556 pv~~v~v~l~d~~~h----------------------------------------------------------------- 570 (691)
T PRK12739 556 PMVDVKATLYDGSYH----------------------------------------------------------------- 570 (691)
T ss_pred ceeeEEEEEEEeccC-----------------------------------------------------------------
Confidence 777777666665544
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
++|+
T Consensus 571 ----------------------------------------------------------------------------~~~s 574 (691)
T PRK12739 571 ----------------------------------------------------------------------------DVDS 574 (691)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 4455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
+.++|.+|+++||++||++|.|+||||||.|+|+||++++|+||++|++|||+|++++..++++.|+|++|++|+|||++
T Consensus 575 ~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~~~ 654 (691)
T PRK12739 575 SELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYAT 654 (691)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCcEEEEEEeCHHHhhccHH
Confidence 56677788999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+||++|+|+|+|+|.|+||+++|++++++++++.
T Consensus 655 ~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~ 688 (691)
T PRK12739 655 DLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKR 688 (691)
T ss_pred HHHhhccCceEEEEEeccceECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-120 Score=1111.44 Aligned_cols=682 Identities=47% Similarity=0.774 Sum_probs=630.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++||||+|+||+|+|||||+++|++.++.+...+.++++ .+++|+.+.|++||+|++.....+.|++++++|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g---~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG---AATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 456789999999999999999999999999988877777766 47899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++++|+|+.+|+..++..+|+++.+.++|+++|+||+|+.++++.+.++++++.++....+
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVP 161 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+....++.|++|++.+..++|+...+......++|+++.+.+.++|++|+|.+++.||++|++|+++..++.+++.
T Consensus 162 ~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 162 IQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999998777777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||+|||.+|.|++.|||+|++++|+|.+++................|+ +++|++++|||+.+|+
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~--~~~~l~a~VfK~~~d~ 319 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKAS--DDEPFSALAFKVATDP 319 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCC--CCCceEEEEEEeeecC
Confidence 99999999999999999999999999999999999999998754432211111234456776 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|+.||.|++.+.++++++.+|+.++|++..++++++|||||++.|+ ++.+||||+ +...+..++
T Consensus 320 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~ 398 (689)
T TIGR00484 320 FVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLC-DPKIDVILE 398 (689)
T ss_pred CCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEe-CCCCccccC
Confidence 8 9999999999999999999999888889999999999999999999999999999999 788999998 555566778
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.++.|.++|.++|++|.++||+|++.+|++|||++|+||||||||++++||+++||+++++++|.
T Consensus 399 ~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~ 478 (689)
T TIGR00484 399 RMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQ 478 (689)
T ss_pred CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++..++|++|+||++||++++++++|++. ++++|.+++.++.+|++|+++|++||+|++.+|||+|+
T Consensus 479 V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~---~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~ 555 (689)
T TIGR00484 479 VAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEP---KGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGY 555 (689)
T ss_pred EEEeecccCccccccccccccCCCCceEEEEEEEEECCC---CCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999988889999999999999999999999875 48899999999999999999999888888888888887
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.|+++|
T Consensus 556 pv~~v~v~l~~~~~~----------------------------------------------------------------- 570 (689)
T TIGR00484 556 PVVDIKATLFDGSYH----------------------------------------------------------------- 570 (689)
T ss_pred ceeeEEEEEEEeecC-----------------------------------------------------------------
Confidence 777777666665554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
++|+
T Consensus 571 ----------------------------------------------------------------------------~~~s 574 (689)
T TIGR00484 571 ----------------------------------------------------------------------------DVDS 574 (689)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 4455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
+.++|++|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|++|++|+|||++
T Consensus 575 ~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~g~~~ 654 (689)
T TIGR00484 575 SEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYAT 654 (689)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCcEEEEEEeCHHHHhChHH
Confidence 55667788899999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+||++|+|+|+|+|.|+||+++|++++++||++.
T Consensus 655 ~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 655 DLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred HHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999653
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-116 Score=1082.63 Aligned_cols=679 Identities=43% Similarity=0.716 Sum_probs=623.3
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.+++|||+|+||.|+|||||+++|++.++.+.+.+.++.+ .+++|+.+.|+++|+|+......+.|+++.+++|||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG---TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC---cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 55679999999999999999999999999988887777776 457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++..+++.+|++++|+|+.+|...++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPL 160 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCC-CCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
++|+..+..|.|++|++.+..+.|... .+..+...++|+.+.+.+.++|.+|+|.+++.||+++++|+++..++.++++
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 999999999999999999999999643 3556677789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||||||++|.|++.|||+|++++|+|.+++..+... .........|+ +++|++++|||+.+++
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~-~~~~~~~~~~~--~~~pl~a~VfK~~~d~ 317 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK-DNGKPVKVDPD--PEKPLLALVFKVQYDP 317 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC-CCCCceeecCC--CCCCeEEEEEEeeecC
Confidence 99999999999999999999999999999999999999998765443322 11112345666 8899999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|++||+|++.+.++.+++.+||.++|++..+++++.||||+++.|+ ++.+||||+ +...+..++
T Consensus 318 ~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~ 396 (687)
T PRK13351 318 YAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLH-DSADPVLLE 396 (687)
T ss_pred CCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEe-CCCCccccC
Confidence 8 9999999999999999999999988899999999999999999999999999999999 788999998 444456677
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.+++|.++|.++|++|.+|||+|++.++++|||++|+|+||||||++++||+++|++++++++|.
T Consensus 397 ~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~ 476 (687)
T PRK13351 397 LLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQ 476 (687)
T ss_pred CCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||++.++..++|++++|+++||++++++++|++. +.++.|.+.++++.+|++|+++|++||+|++++|||+|+
T Consensus 477 V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~--~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~ 554 (687)
T PRK13351 477 VAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER--GAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGY 554 (687)
T ss_pred EEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC--CCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999988888999999999999999999999875 456999999999999999999998888888777777777
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.|++
T Consensus 555 pv~~v~v~l~~~~------------------------------------------------------------------- 567 (687)
T PRK13351 555 PVTDLRVTVLDGK------------------------------------------------------------------- 567 (687)
T ss_pred ceeeEEEEEEEec-------------------------------------------------------------------
Confidence 7777775555554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
+|++++
T Consensus 568 --------------------------------------------------------------------------~~~~~s 573 (687)
T PRK13351 568 --------------------------------------------------------------------------YHPVDS 573 (687)
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 444556
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEE-EEEEechhhhcCch
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT-IYAEIPLNDMFGFA 990 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~-i~a~~P~~e~~g~~ 990 (1043)
+.++|++|++.||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++... |+|++|++|+|||+
T Consensus 574 ~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~~~~ 653 (687)
T PRK13351 574 SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYA 653 (687)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEEEEEECHHHhhChH
Confidence 67788899999999999999999999999999999999999999999999999999998766555 99999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~ 1023 (1043)
++||++|+|+|+|+|+|+||+++|++++++++-
T Consensus 654 ~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 654 TRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred HHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 999999999999999999999999999998873
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-110 Score=1025.99 Aligned_cols=665 Identities=47% Similarity=0.757 Sum_probs=609.9
Q ss_pred EEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHH
Q psy11896 205 SAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 284 (1043)
Q Consensus 205 vG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~ 284 (1043)
+||+|+|||||+++|++.++.+.+.+.++++ .+++|+++.|++||+|+......+.|+++.+++||||||.+|..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG---TTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC---cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHH
Confidence 5999999999999999999998887777776 3689999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCe
Q psy11896 285 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET 364 (1043)
Q Consensus 285 ~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~ 364 (1043)
..+++.+|++++|+|+..+...++..+|+.+...++|+++|+||+|+...+..+.++++++.++....+.++|+..+..+
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999998998999999999999999999999999999
Q ss_pred eEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCc
Q psy11896 365 KGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 444 (1043)
Q Consensus 365 ~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~ 444 (1043)
.|++|++.+..++|+ .|..+...++|+...+.+.++|..|+|.+++.|++++++|+++..++.+++...++++++.+.
T Consensus 158 ~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 158 TGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred eEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 466667778888888899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEe
Q psy11896 445 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCY 523 (1043)
Q Consensus 445 ~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~ 523 (1043)
++|||+|||++|.|++.|||+|+.++|+|.+++.+... .........|+ +++|++++|||++++++ |+++|+|||
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~--~~~~~~~~~~~--~~~~l~a~v~k~~~~~~~G~i~~~RV~ 311 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGE--DGEEGAELAPD--PDGPLVALVFKTMDDPFVGKLSLVRVY 311 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCC--CCccccccccC--CCCCeEEEEEEeeecCCCCcEEEEEEe
Confidence 99999999999999999999999999999765432110 11112334566 88999999999999998 999999999
Q ss_pred cCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccccCCCCCCceEEE
Q psy11896 524 QGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSM 602 (1043)
Q Consensus 524 sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~ 602 (1043)
||+|++||+|++.++++++++.+|+.++|++.++++++.||||+++.|+ ++.+||||+ +...+..++++.+++|++++
T Consensus 312 sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~~~~~~~~P~~~~ 390 (668)
T PRK12740 312 SGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLC-DKGDPILLEPMEFPEPVISL 390 (668)
T ss_pred eeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEe-CCCCccccCCCCCCCcceEE
Confidence 9999999999999888889999999999999999999999999999999 788999998 45556677888899999999
Q ss_pred EEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeeccc
Q psy11896 603 SIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF 682 (1043)
Q Consensus 603 ~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~ 682 (1043)
+|+|.+++|.++|.++|++|.++||++++..+++|||++|+|+||||||++++||+++|++++.+++|.|+|||||.+++
T Consensus 391 ~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~ 470 (668)
T PRK12740 391 AIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKA 470 (668)
T ss_pred EEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeec
Q psy11896 683 DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKD 762 (1043)
Q Consensus 683 ~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d 762 (1043)
+..++|++++||++||++++++++|++. +.++.|.+++.++.+|++|+++|++||++++.+|||+|+||+||+|+|.+
T Consensus 471 ~~~~~~~~~~~~~~~~~~v~l~~ep~~~--~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~ 548 (668)
T PRK12740 471 EGHGRHKKQSGGHGQFGDVWLEVEPLPR--GEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTD 548 (668)
T ss_pred cccceeccccCCCCceEEEEEEEEECCC--CCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEe
Confidence 8889999999999999999999999875 46789999999999999888888887777777777666666666655555
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhc
Q psy11896 763 GDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCE 842 (1043)
Q Consensus 763 ~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~ 842 (1043)
+
T Consensus 549 ~------------------------------------------------------------------------------- 549 (668)
T PRK12740 549 G------------------------------------------------------------------------------- 549 (668)
T ss_pred c-------------------------------------------------------------------------------
Confidence 4
Q ss_pred ccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHH
Q psy11896 843 KGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 922 (1043)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 922 (1043)
.+|++++++++|++|+++
T Consensus 550 --------------------------------------------------------------~~~~~~s~~~~~~~a~~~ 567 (668)
T PRK12740 550 --------------------------------------------------------------SYHSVDSSEMAFKIAARL 567 (668)
T ss_pred --------------------------------------------------------------ccccCCCCHHHHHHHHHH
Confidence 445556666778899999
Q ss_pred HHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceE
Q psy11896 923 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGE 1002 (1043)
Q Consensus 923 a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~ 1002 (1043)
||++|+++|.|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|++|++|+|||+++||++|+|+|+
T Consensus 568 a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~ 647 (668)
T PRK12740 568 AFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGS 647 (668)
T ss_pred HHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEE
Confidence 99999999999999999999999999999999999999999999999876669999999999999999999999999999
Q ss_pred EEeEecccccCCHHHHHHHH
Q psy11896 1003 FSMDYSRYSPALPEVQDRLV 1022 (1043)
Q Consensus 1003 ~~~~f~~~~~~~~~~~~~~~ 1022 (1043)
|++.|+||+++|++++++++
T Consensus 648 ~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 648 FSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred EEEEecccccCCHHHHHHHh
Confidence 99999999999999998876
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-111 Score=1045.00 Aligned_cols=716 Identities=25% Similarity=0.397 Sum_probs=590.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------- 265 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 265 (1043)
+.+++|||+++||+|||||||+++|++.++.+.+. ..| .++++|+++.|++||+|++++...+.|.
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g--~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAG--DARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCC--ceeecccchhhHhhcceeeccceEEEeecccccccCC
Confidence 45779999999999999999999999999887653 222 1457999999999999999998888886
Q ss_pred -CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----C-------
Q psy11896 266 -DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----G------- 333 (1043)
Q Consensus 266 -~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~------- 333 (1043)
++.++|+|||||.||..++.++++.+|+||+|+|+.+|++.||+.+|+++...++|+++|+||||+. +
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCHHHHHHHHHHHhC-----------CCceeeeeccccCCC--------eeE--------EEEcccceeE---eecCCCC
Q psy11896 334 ADPYRVINQMRQKVG-----------HNAAFLQIPIGLGSE--------TKG--------IIDLIQRKAI---YFEGPLG 383 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~~--------~~g--------~~dl~~~~~~---~~~~~~g 383 (1043)
+++..++++++..++ ..+.+.++|++++.. |.| .++.+....| +|++ .+
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~-~~ 248 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA-KT 248 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC-CC
Confidence 567788888887765 256677888876541 222 2233333333 4543 24
Q ss_pred CeeEeec-------CchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc--cCCCCHHHH--HH-HHHHhhhcCccEEEEEe
Q psy11896 384 DNLRIEE-------IPADLKKEAESKRQELIEHVAEGDEILGEMFLE--EKSISEDDI--KK-AIRRSTLTRKFTPVLVG 451 (1043)
Q Consensus 384 ~~~~~~~-------i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~g 451 (1043)
..+...+ +|..+.+.+.++|.+|++.+++.||+++++|++ +.+++.+++ .. .+.+++. +.|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv--- 324 (836)
T PTZ00416 249 KKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA--- 324 (836)
T ss_pred CEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch---
Confidence 4333332 456788999999999999999999999999999 667888774 33 5667766 899998
Q ss_pred eccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc-EEEEEEe
Q psy11896 452 TALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCY 523 (1043)
Q Consensus 452 Sa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~-i~~~RV~ 523 (1043)
++.|||+|++++|+|.+++..+... .+........|+ +++|++++|||+.++++ |+ ++|+|||
T Consensus 325 -------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~plva~VfK~~~~~~~g~~~s~~RV~ 395 (836)
T PTZ00416 325 -------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCD--PNGPLMMYISKMVPTSDKGRFYAFGRVF 395 (836)
T ss_pred -------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccC--CCCCeEEEEEeeeecCCCCcEEEEEEEE
Confidence 7999999999999998765433211 111223466777 89999999999999987 87 8999999
Q ss_pred cCeecCCCEEEe----cCCCcEE-----EeceEEEeccCCeeecCeecCCCEEEEccC-c--cccCcEEecCCCCccccc
Q psy11896 524 QGKLRKGEMIYN----VRTDKKV-----RVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D--CASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 524 sGtl~~gd~v~~----~~~~~~~-----ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~--~~~Gdtl~~~~~~~~~~~ 591 (1043)
||+|+.||.|++ .+.+.++ +|.+||.++|++..++++|+|||||+|.|+ + +++| ||+ +...+..+.
T Consensus 396 SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~-~~~~~~~l~ 473 (836)
T PTZ00416 396 SGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TIT-TSETAHNIR 473 (836)
T ss_pred eeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eec-CCCCccccc
Confidence 999999999994 4433344 599999999999999999999999999999 4 6899 998 455566777
Q ss_pred CCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecC
Q psy11896 592 SIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGK 669 (1043)
Q Consensus 592 ~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~ 669 (1043)
++.++ +|+++++|||.+++|+++|.++|++|.+|||++++.. ++|||++|+||||+|||+|++||+++| ++++++++
T Consensus 474 ~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~ 552 (836)
T PTZ00416 474 DMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSD 552 (836)
T ss_pred ccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecC
Confidence 78775 9999999999999999999999999999999999865 899999999999999999999999999 99999999
Q ss_pred CeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 670 p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|.|+|||||+++++..+++++++|+ .+++++++|++++ ..+.++. |-+.
T Consensus 553 P~V~yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~-------------------~~~~~~~--------~~~~ 601 (836)
T PTZ00416 553 PVVSYRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEE-------------------LAEAIEE--------GKVG 601 (836)
T ss_pred CEEEEEEEecccccceEEEECCCCC----eeEEEEEEECCHH-------------------HHhHhhc--------Cccc
Confidence 9999999999999999999999765 4999999998641 1111111 1000
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
+. . .... ++.+.. .
T Consensus 602 ------~~----~------~~~~------------------------------------------------~~~~~~--~ 615 (836)
T PTZ00416 602 ------PE----D------DPKE------------------------------------------------RANFLA--D 615 (836)
T ss_pred ------cc----c------chhH------------------------------------------------HHhhhh--c
Confidence 00 0 0000 000000 0
Q ss_pred CCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCcccc-
Q psy11896 830 KDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM- 908 (1043)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~- 908 (1043)
...|.. ...+++|+|++...|+|+++++..+... ...+. ..+..||+||+.+||||+|||+||+|+|+++.+|+
T Consensus 616 ~~~~~~---~~~~~i~~f~~~~~g~nil~~~~~~~~~-~~~~~-~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~ 690 (836)
T PTZ00416 616 KYEWDK---NDARKIWCFGPENKGPNVLVDVTKGVQY-MNEIK-DSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHAD 690 (836)
T ss_pred ccCcch---hhhhCeeeccCCCCCCcEEEecCCcccc-hHHHH-HHHHHHHHHHHhcCcccCCcccceEEEEEEeecccc
Confidence 011321 1235689999999999999987664211 01111 26889999999999999999999999999999998
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhh
Q psy11896 909 -VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLND 985 (1043)
Q Consensus 909 -~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e 985 (1043)
+++++++|++|+++||++||++|+||||||||.|+|+||++++|+||++|++|||+|+++++.++ +++|+|++|++|
T Consensus 691 ~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e 770 (836)
T PTZ00416 691 AIHRGAGQIIPTARRVFYACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAE 770 (836)
T ss_pred ccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHH
Confidence 77889999999999999999999999999999999999999999999999999999999998766 489999999999
Q ss_pred hcCchHHHHhhcCCceEEEeEecccccCCHHH------HHHHHHHHHHhcCCchH
Q psy11896 986 MFGFAGDLRSSTQGKGEFSMDYSRYSPALPEV------QDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 986 ~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 1034 (1043)
+|||+++||++|||+|+|+|+|+||+++|+|+ +.++|.+.|+||||.++
T Consensus 771 ~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~ 825 (836)
T PTZ00416 771 SFGFTAALRAATSGQAFPQCVFDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPE 825 (836)
T ss_pred hcCCCHHHHhhCcCCceEEEEeccEEECCCCCCCchhHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999998764 67899999999999754
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-110 Score=1039.30 Aligned_cols=712 Identities=23% Similarity=0.355 Sum_probs=569.5
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-------- 265 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 265 (1043)
..+++||||+|+||+|||||||+++|++.++.+.+. ..++ ++++|++++|++||+|++++..++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGD---VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 456789999999999999999999999999987762 3333 567999999999999999999999884
Q ss_pred --------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC-----
Q psy11896 266 --------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----- 332 (1043)
Q Consensus 266 --------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----- 332 (1043)
++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+++|+||||+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CCHHHHHHHHHH---HhCCC-ceeeee-ccc----cCCCeeEEEEcccceeE---------------------
Q psy11896 333 --G----ADPYRVINQMRQ---KVGHN-AAFLQI-PIG----LGSETKGIIDLIQRKAI--------------------- 376 (1043)
Q Consensus 333 --~----~~~~~~~~~i~~---~l~~~-~~~~~~-p~~----~~~~~~g~~dl~~~~~~--------------------- 376 (1043)
. +++.+++++++. .++.. ..+.++ |.. +++.+.||.+.+...+.
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 2 456777777772 22211 112333 443 36777888888775542
Q ss_pred eecCCCCCeeEeec--Cc---hhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHHHHHHHhhhcCccEEEE
Q psy11896 377 YFEGPLGDNLRIEE--IP---ADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIKKAIRRSTLTRKFTPVL 449 (1043)
Q Consensus 377 ~~~~~~g~~~~~~~--i~---~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~ 449 (1043)
+|++ .+..+...+ .| ..+.+.+.+++.+|++.+++.|++++++|+++ ..++.++++. +++++....+.|+|
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~ 326 (843)
T PLN00116 249 FFDP-ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWL 326 (843)
T ss_pred eEcC-CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhc
Confidence 3432 233333333 32 23455667799999999999999999999987 5799999987 99999999999999
Q ss_pred EeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc-EEEEE
Q psy11896 450 VGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMR 521 (1043)
Q Consensus 450 ~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~-i~~~R 521 (1043)
++| +.|||+|++++|+|.+++..+... ..........|+ +++|++++|||+.++++ |+ ++|+|
T Consensus 327 ~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~a~VfK~~~~~~~g~~l~~~R 397 (843)
T PLN00116 327 PAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGR 397 (843)
T ss_pred CCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCC--CCCCeEEEEEeeeecCCCCeEEEEEE
Confidence 976 899999999999998765443321 122224567777 88999999999998877 76 99999
Q ss_pred EecCeecCCCEEE----ecCCCcE-----EEeceEEEeccCCeeecCeecCCCEEEEccC-ccc-cCcEEecCCC--Ccc
Q psy11896 522 CYQGKLRKGEMIY----NVRTDKK-----VRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCA-SGDTFVTDKN--NSI 588 (1043)
Q Consensus 522 V~sGtl~~gd~v~----~~~~~~~-----~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~-~Gdtl~~~~~--~~~ 588 (1043)
||||+|+.||.|+ |...+++ +++.+||.++|++.+++++++|||||++.|+ ++. +||||+ +.. .+.
T Consensus 398 VysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~-~~~~~~~~ 476 (843)
T PLN00116 398 VFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLT-NEKEVDAH 476 (843)
T ss_pred EEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceec-CCcccCCc
Confidence 9999999999998 4433333 5899999999999999999999999999999 444 499998 444 456
Q ss_pred cccCCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc--CccE
Q psy11896 589 SLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY--NCPV 665 (1043)
Q Consensus 589 ~~~~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~--~v~i 665 (1043)
.++++.+| +|+++++|||.+++|+++|.+||++|.+|||+|++. +++|||++|+||||+|||++++||+++| |+++
T Consensus 477 ~l~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLEi~~~rL~~~f~~~vev 555 (843)
T PLN00116 477 PIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCT-IEESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
T ss_pred cccccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEE-EcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcE
Confidence 67788888 999999999999999999999999999999999986 4999999999999999999999999999 9999
Q ss_pred EecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHH---
Q psy11896 666 VLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQM--- 742 (1043)
Q Consensus 666 ~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~--- 742 (1043)
++++|+|+|||||.++++..++++ + .++|++++++++|++++.-..++ .+.+....-++.....+..++.|.
T Consensus 556 ~~s~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~~~ie-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 630 (843)
T PLN00116 556 KVSDPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAID-DGRIGPRDDPKIRSKILAEEFGWDKDL 630 (843)
T ss_pred EEcCCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHHHHHH-cCCcccCcchHHHHHHhhhhcCcchhh
Confidence 999999999999999887766643 4 56889999999998753100000 000000000000001111111110
Q ss_pred ----HHcCCccc--cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 743 ----CEKGCLSG--SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 743 ----~~~G~l~g--~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
..-||-.. ....+-. .| .++... +
T Consensus 631 ~~~i~~~gp~~~~~~~~~~~~----~g---------~~~~~~----i--------------------------------- 660 (843)
T PLN00116 631 AKKIWCFGPETTGPNMVVDMC----KG---------VQYLNE----I--------------------------------- 660 (843)
T ss_pred hcCeeeecCCCCCceEEEECC----cc---------hhhHHH----H---------------------------------
Confidence 01133221 2211100 00 000000 0
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
...+..||+|||++||||+|||+|
T Consensus 661 --------------------------------------------------------~~ai~~G~~~a~~~GpL~g~Pv~~ 684 (843)
T PLN00116 661 --------------------------------------------------------KDSVVAGFQWATKEGALAEENMRG 684 (843)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHhcCCccCCeeee
Confidence 013567999999999999999999
Q ss_pred eEEEEecCcccc--CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC-
Q psy11896 897 VRMVLKDGDNHM--VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD- 973 (1043)
Q Consensus 897 ~~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~- 973 (1043)
|+|+|.++.+|+ .++++++|++|+++||++||++|+||||||||.|+|+||++++|+||++|++|||+|++++..++
T Consensus 685 V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t 764 (843)
T PLN00116 685 ICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGT 764 (843)
T ss_pred EEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCC
Confidence 999999999997 55667899999999999999999999999999999999999999999999999999999998765
Q ss_pred -cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHH------HHHHHHHHHHHhcCCchH
Q psy11896 974 -WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPE------VQDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 974 -~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 1034 (1043)
.++|+|++|++|||||+++||++|||+|+|+|+|+||+++|+| .+.+++.+.|+||||.++
T Consensus 765 ~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~ 832 (843)
T PLN00116 765 PLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQ 832 (843)
T ss_pred ceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCCCCCchhHHHHHHHHHHhhCCCCCC
Confidence 4899999999999999999999999999999999999999865 567899999999999764
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-107 Score=995.42 Aligned_cols=640 Identities=32% Similarity=0.472 Sum_probs=542.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEE----EEecCeeEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY----TLWKDHNIN 270 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~ 270 (1043)
..+++|||+++||.|+|||||+++|++.++.+.+. ..++ .+++|+.+.|++||+|+.....+ +.|++++++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~---~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQ---QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCc---eeecCCCHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 45678999999999999999999999998887662 2222 45789999999999999987655 577899999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHN 350 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~ 350 (1043)
|||||||.+|..++..+++.+|++|+|+|+.+|+..+|..+|+.+...++|.++|+||+|+..+++....+++++.++..
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888765
Q ss_pred ceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc-------
Q psy11896 351 AAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE------- 423 (1043)
Q Consensus 351 ~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~------- 423 (1043)
+..++.++.. .+|+++ +..+.+..++.++.|++.|++
T Consensus 170 ~~~v~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 170 ITEVNKLIKA-----------------------------MAPEEF-------RDKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred hHHHHhhhhc-----------------------------cCCHHH-------hhceEechhhCCHHHHhhhhcccccchh
Confidence 4433322211 001111 112334445566677777766
Q ss_pred --cCCCCHHHHHHHHHHhhhcC--ccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeC
Q psy11896 424 --EKSISEDDIKKAIRRSTLTR--KFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLN 493 (1043)
Q Consensus 424 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~ 493 (1043)
+..++.+++.+.+.+..... .++|| ++.|||+|++++|+|.+++..+.+. ..+.......
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 55566777777666544433 68898 5899999999999998765433221 1111234566
Q ss_pred CCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC
Q psy11896 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV 572 (1043)
Q Consensus 494 ~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl 572 (1043)
|+ +++|++++|||+.++++ |+++|+|||||+|++||.|++.+.+.+++|.+|+.++|.+.++++++.|||||+|.|+
T Consensus 284 ~d--~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl 361 (720)
T TIGR00490 284 CD--PKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGL 361 (720)
T ss_pred CC--CCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECc
Confidence 76 89999999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccCcEEecCCCC-cccccCC-CCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhH
Q psy11896 573 -DCASGDTFVTDKNN-SISLESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649 (1043)
Q Consensus 573 -~~~~Gdtl~~~~~~-~~~~~~~-~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelH 649 (1043)
++.+||||+ +... ...++++ .+|+|+++++|+|+++.|+++|.++|++|++|||+|++.+|++|||++|+||||+|
T Consensus 362 ~~~~~GdtL~-~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElH 440 (720)
T TIGR00490 362 KDAVAGETIC-TTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELH 440 (720)
T ss_pred cccccCceee-cCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEcccee
Confidence 788999998 3432 3445655 47899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccEEecCCeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCC----------------
Q psy11896 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSA---------------- 712 (1043)
Q Consensus 650 lei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~---------------- 712 (1043)
||++++||+++||+++++++|+|+|||||++.++ ..+++ .++|++++++++|++++.
T Consensus 441 Lei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~ 514 (720)
T TIGR00490 441 LEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKK 514 (720)
T ss_pred HHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccch
Confidence 9999999999999999999999999999998876 44443 247899999999997641
Q ss_pred -----------------------CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccC
Q psy11896 713 -----------------------NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769 (1043)
Q Consensus 713 -----------------------~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~ 769 (1043)
++++.|+++++|+.+|++|++||++||+||+++|||+|+||+||+|+|.||++|..
T Consensus 515 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~- 593 (720)
T TIGR00490 515 KERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHED- 593 (720)
T ss_pred HHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccc-
Confidence 15788888888888888888888888887777777777777777766666655420
Q ss_pred ChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCC
Q psy11896 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGS 849 (1043)
Q Consensus 770 ~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1043)
T Consensus 594 -------------------------------------------------------------------------------- 593 (720)
T TIGR00490 594 -------------------------------------------------------------------------------- 593 (720)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHH
Q psy11896 850 RVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 929 (1043)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 929 (1043)
.+|+++++|++|+++||++||+
T Consensus 594 ----------------------------------------------------------~vds~~~~f~~a~~~a~~~a~~ 615 (720)
T TIGR00490 594 ----------------------------------------------------------AVHRGPAQVIPAVRSGIFAAMM 615 (720)
T ss_pred ----------------------------------------------------------cccCccchHHHHHHHHHHHHHH
Confidence 1466778899999999999999
Q ss_pred hcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecc
Q psy11896 930 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSR 1009 (1043)
Q Consensus 930 ~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~ 1009 (1043)
+|+|+||||||.|+|+||.+++|+||++|++|||+|++++..++.++|+|++|++|||||+++||++|||+|+|+|.|+|
T Consensus 616 ~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~ 695 (720)
T TIGR00490 616 QAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAG 695 (720)
T ss_pred hCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCch
Q psy11896 1010 YSPALPEVQDRLVNEYQEATNPQA 1033 (1043)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1043)
|+++|++++++++.+.|+||||++
T Consensus 696 y~~vp~~~~~~ii~~~r~rkgl~~ 719 (720)
T TIGR00490 696 FELVPQNLQQEFVMEVRKRKGLKL 719 (720)
T ss_pred cccCCHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999986
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-106 Score=991.91 Aligned_cols=648 Identities=33% Similarity=0.472 Sum_probs=529.1
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe----cCeeE
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW----KDHNI 269 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i 269 (1043)
.+.++||||+++||+|||||||+++|++.++.+.+. ..++ ++++|+.+.|++||+|++++..++.| +++.+
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGE---QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCc---ceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 345689999999999999999999999999988763 2333 56899999999999999999988887 47899
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
+|||||||.||..++.++++.+|++|+|||+.+|++.+|+.+|+++.+.++|+++|+||||+..+++....+.+.+.++.
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 169 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLK 169 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877654444444443332
Q ss_pred CceeeeeccccCCCeeEEEEcccce----eEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccC
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRK----AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~----~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~ 425 (1043)
.. ..+.++++.+.+. .+.+.+..|+....+.. ......+..+.+..++. +++++.|.++
T Consensus 170 ~~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~-----~~~~~~~~~~~~~~~~~-~~l~e~~~~~- 232 (731)
T PRK07560 170 II----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSAL-----YNWAISVPMMQKTGIKF-KDIIDYYEKG- 232 (731)
T ss_pred HH----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecc-----cccceeHHHHHHhCCCH-HHHHHHHhcC-
Confidence 11 0111122222211 12233333443221111 01111222344444444 5688888543
Q ss_pred CCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCC
Q psy11896 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGK 499 (1043)
Q Consensus 426 ~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~ 499 (1043)
+.+++. +++|++ +.|||+|++++|+|.++++.+.+. ..+.......|+ ++
T Consensus 233 --~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~ 288 (731)
T PRK07560 233 --KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCD--PN 288 (731)
T ss_pred --CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccC--CC
Confidence 234442 237884 799999999999998765433222 111223456677 88
Q ss_pred CCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 500 HPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 500 ~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+|++++|||+.+|++ |+++|+|||||+|++||.|++.+.+.+++|.+|+.++|++..+++++.||||++|.|+ ++.+|
T Consensus 289 ~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~G 368 (731)
T PRK07560 289 GPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAG 368 (731)
T ss_pred CCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccC
Confidence 999999999999998 9999999999999999999999988889999999999999999999999999999999 68899
Q ss_pred cEEecCCCCcccccCC-CCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHH
Q psy11896 578 DTFVTDKNNSISLESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 656 (1043)
Q Consensus 578 dtl~~~~~~~~~~~~~-~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~r 656 (1043)
|||+ +.....+++++ .+|+|+++++|+|.++.|.++|.++|++|.+|||+|++.++++|||++|+|+||+|||++++|
T Consensus 369 dtL~-~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~r 447 (731)
T PRK07560 369 ETVV-SVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYR 447 (731)
T ss_pred CEEe-CCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHH
Confidence 9998 45555667776 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccEEecCCeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCC-----------------------
Q psy11896 657 MEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSA----------------------- 712 (1043)
Q Consensus 657 L~~~~~v~i~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~----------------------- 712 (1043)
|+++|++++++++|.|+|||||.++++ ..+. ++ ++|++++++++|++++.
T Consensus 448 L~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 521 (731)
T PRK07560 448 IKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILRE 521 (731)
T ss_pred HHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHH
Confidence 999999999999999999999998874 3322 22 45899999999987531
Q ss_pred ------------------CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhH
Q psy11896 713 ------------------NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEIS 774 (1043)
Q Consensus 713 ------------------~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~ 774 (1043)
++++.|+|+++|+.+|++|+++|++||+||+.+|||+|+||+||+|+|.||++|..
T Consensus 522 ~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d------ 595 (731)
T PRK07560 522 KLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHED------ 595 (731)
T ss_pred hhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeeccc------
Confidence 13677777777777777777777777777777777777777777766666655420
Q ss_pred HHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCccccc
Q psy11896 775 FILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGV 854 (1043)
Q Consensus 775 ~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1043)
T Consensus 596 -------------------------------------------------------------------------------- 595 (731)
T PRK07560 596 -------------------------------------------------------------------------------- 595 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCce
Q psy11896 855 RMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 934 (1043)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~ 934 (1043)
..++++++|++|+++||++||++|+|+
T Consensus 596 -----------------------------------------------------~~~~~~~~~~~a~~~a~~~a~~~a~p~ 622 (731)
T PRK07560 596 -----------------------------------------------------AIHRGPAQVIPAVRNAIFAAMLTAKPT 622 (731)
T ss_pred -----------------------------------------------------ccccccchHHHHHHHHHHHHHHhCCCE
Confidence 134557899999999999999999999
Q ss_pred eecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 935 llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+++||++|+|+|+|+|.|+||+++|
T Consensus 623 LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 623 LLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred EeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCch
Q psy11896 1015 PEVQDRLVNEYQEATNPQA 1033 (1043)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~ 1033 (1043)
++++++++++.|+||||+.
T Consensus 703 ~~~~~~ii~~~r~rKGl~~ 721 (731)
T PRK07560 703 DSLQLDIVRQIRERKGLKP 721 (731)
T ss_pred HHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999985
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-106 Score=866.28 Aligned_cols=716 Identities=25% Similarity=0.357 Sum_probs=559.4
Q ss_pred cCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----
Q psy11896 191 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----- 265 (1043)
Q Consensus 191 ~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----- 265 (1043)
.++....+|||+.+++|+|+|||||+++|....+.++.. +.| -++++|.+++|++|||||+++.+++.+.
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a---kaG--e~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~d 85 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA---KAG--ETRFTDTRKDEQERGITIKSTAISLFFEMSDDD 85 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeec---ccC--CccccccccchhhcceEeeeeeeeehhhhhHhH
Confidence 456677889999999999999999999999888888642 112 2679999999999999999999987652
Q ss_pred -----------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC--
Q psy11896 266 -----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL-- 332 (1043)
Q Consensus 266 -----------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~-- 332 (1043)
+..|||||.|||+||++|+..|||+.|++++|||+.+|++.||+.+++++..+++..++|+||||+.
T Consensus 86 l~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlL 165 (842)
T KOG0469|consen 86 LKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALL 165 (842)
T ss_pred HHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCCHHHHHHHHHHHhCCCcee-----------eee-----ccccCCCeeEEEEcccceeEeecCCCC-----------
Q psy11896 333 --GADPYRVINQMRQKVGHNAAF-----------LQI-----PIGLGSETKGIIDLIQRKAIYFEGPLG----------- 383 (1043)
Q Consensus 333 --~~~~~~~~~~i~~~l~~~~~~-----------~~~-----p~~~~~~~~g~~dl~~~~~~~~~~~~g----------- 383 (1043)
+.+.++.++.+++......+. +++ .++.++++.||.+.+.+++-.|..+.|
T Consensus 166 ELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LW 245 (842)
T KOG0469|consen 166 ELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLW 245 (842)
T ss_pred hhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhh
Confidence 445566666666655422111 111 245678999999988765544422211
Q ss_pred -Ce--------eEe-------ecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccC---------CCCHHHHHHHHHH
Q psy11896 384 -DN--------LRI-------EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK---------SISEDDIKKAIRR 438 (1043)
Q Consensus 384 -~~--------~~~-------~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~---------~~~~~~l~~~l~~ 438 (1043)
+. +.. .+.+..|...+.....++.+++.+...+-...|++.. ......|.+
T Consensus 246 g~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK---- 321 (842)
T KOG0469|consen 246 GDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLK---- 321 (842)
T ss_pred cccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHH----
Confidence 11 100 1122333334444555566666555433222333321 112222221
Q ss_pred hhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
..+++|.|. -+.||++|.-+||||..++.+|... +++....+.+|| +++|+++||+|+...
T Consensus 322 -~vMr~wLPA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD--~~aplmmYvSKMvPt 388 (842)
T KOG0469|consen 322 -VVMRKWLPA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCD--PKAPLMMYVSKMVPT 388 (842)
T ss_pred -HHHHHhcch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccC--CCCCeEEeeeecccc
Confidence 346678887 5899999999999999999887655 223334567888 999999999999876
Q ss_pred CC--ccEEEEEEecCeecCCCEEEecCC----CcEE-----EeceEEEeccCCeeecCeecCCCEEEEccCc--cccCcE
Q psy11896 513 KF--GQLTYMRCYQGKLRKGEMIYNVRT----DKKV-----RVSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CASGDT 579 (1043)
Q Consensus 513 ~~--G~i~~~RV~sGtl~~gd~v~~~~~----~~~~-----ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~Gdt 579 (1043)
.. .+++|+|||||++.+|+++.+... |+++ .|.+..+|||+..++++.++||||+++.|+| +..+.|
T Consensus 389 sDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGT 468 (842)
T KOG0469|consen 389 SDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGT 468 (842)
T ss_pred CCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCc
Confidence 54 458999999999999999987643 3332 4667778999999999999999999999994 334558
Q ss_pred EecCCCCcccccCCCC-CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHH
Q psy11896 580 FVTDKNNSISLESIYV-ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 580 l~~~~~~~~~~~~~~~-~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~ 658 (1043)
|+ ......++..++| -.||++++||++++.|++||.++|++|+++||.+++.+ +|+||++++|.||||||||+++|+
T Consensus 469 iT-t~e~AHNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLe 546 (842)
T KOG0469|consen 469 IT-TSEAAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLE 546 (842)
T ss_pred ee-ehhhhccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHh
Confidence 87 3444566777776 48999999999999999999999999999999999987 689999999999999999999999
Q ss_pred hhc-CccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHH
Q psy11896 659 REY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIK 737 (1043)
Q Consensus 659 ~~~-~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~ 737 (1043)
+.| ++.++.++|.|+||||+.++++..+..|. .+.++++++..+|++.+ +..
T Consensus 547 edhA~iPlk~sdPvVsYrEtvs~~ss~~~lsKS----pNKHNRi~mtaeP~~~~-------------------l~~---- 599 (842)
T KOG0469|consen 547 EDHACIPLKKSDPVVSYRETVSEESSQTCLSKS----PNKHNRIYMTAEPMDDG-------------------LSD---- 599 (842)
T ss_pred hcccCCceecCCCeeeeecccccccchhhhccC----CcccceeEEecccCCch-------------------hhh----
Confidence 999 89999999999999999988876655443 34678999999998642 112
Q ss_pred HHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhh
Q psy11896 738 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLV 817 (1043)
Q Consensus 738 g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l 817 (1043)
.++.|-.. . .-+|...++. +. .+
T Consensus 600 ----~i~~g~v~--------------------~-rd~fK~rAr~-~a---ek---------------------------- 622 (842)
T KOG0469|consen 600 ----DIENGKVN--------------------A-RDEFKARARI-LA---EK---------------------------- 622 (842)
T ss_pred ----hhhcCccC--------------------h-hHHHHHHHHH-HH---HH----------------------------
Confidence 22222110 0 0122222211 10 11
Q ss_pred hcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHH--HHHhhhhhhhhhcCcccccccc
Q psy11896 818 TKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF--ILAAHGFKQMCEKGCLSGSRVA 895 (1043)
Q Consensus 818 ~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gf~~~~~~Gpl~~e~~~ 895 (1043)
.+|..-+ ..++|+|||+..|||++++.+.. | +-++. .+++.|||||+++||||+|-|+
T Consensus 623 -------------y~~dvt~---aRKIWCfgPd~tg~Nll~D~TK~--v--qylnEIKdsVvagFqwA~keG~l~~E~mR 682 (842)
T KOG0469|consen 623 -------------YGWDVTE---ARKIWCFGPDGTGPNLLVDQTKG--V--QYLNEIKDSVVAGFQWATKEGPLFGENMR 682 (842)
T ss_pred -------------hCCchhh---hheeeEeCCCCCCCcEEEecchh--h--HHHHHHHHHHHHHHHHHhccCCccccccc
Confidence 1232222 35689999999999999864421 1 11111 3689999999999999999999
Q ss_pred ceEEEEecCcccc--CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC
Q psy11896 896 GVRMVLKDGDNHM--VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD 973 (1043)
Q Consensus 896 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~ 973 (1043)
||+|++.|..+|. .+...+|+++++|++|+.+++.|.|+|+||+|.|||+||++++|.||++|++|||++.+++...|
T Consensus 683 gvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~G 762 (842)
T KOG0469|consen 683 GVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPG 762 (842)
T ss_pred ceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCC
Confidence 9999999999996 46677899999999999999999999999999999999999999999999999999999998755
Q ss_pred --cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHH------HHHHHHHHHhcCCchH
Q psy11896 974 --WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQ------DRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 974 --~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 1034 (1043)
+|.|+|++||.|||||..+|||-|.|+|.+||.|+||+++|+|.. -+++.+.|++|||.+.
T Consensus 763 tp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~ 831 (842)
T KOG0469|consen 763 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEG 831 (842)
T ss_pred CcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCCCCCCCccchHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999865 5899999999999864
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-102 Score=819.82 Aligned_cols=672 Identities=34% Similarity=0.538 Sum_probs=577.2
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
-+..++|||+|++|+++||||.++++++..|.+...|.+++|+ +++|++..|++||||++++...+.|+|+++|+||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgd---tvtdfla~erergitiqsaav~fdwkg~rinlid 108 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGD---TVTDFLAIERERGITIQSAAVNFDWKGHRINLID 108 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCc---hHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence 3456799999999999999999999999999999999999995 5789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||+||.-++++.+|+.|+++.|+|++.|+++||..+|+++.++++|.++|+||||+..++++..+++++++++..+..
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALK 188 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCe-eEEEEcccceeEee--cCCCCCeeEeecC----chhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--
Q psy11896 354 LQIPIGLGSET-KGIIDLIQRKAIYF--EGPLGDNLRIEEI----PADLKKEAESKRQELIEHVAEGDEILGEMFLEE-- 424 (1043)
Q Consensus 354 ~~~p~~~~~~~-~g~~dl~~~~~~~~--~~~~g~~~~~~~i----~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~-- 424 (1043)
+++|+++..+| +|++|++..+.+.| .+.+|..+...++ .+++.+...++|.+|.+++++.|+++.++|+++
T Consensus 189 l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 189 LQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred EEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhh
Confidence 99999999998 89999999988888 5566777765553 357778888999999999999999999999887
Q ss_pred ---CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCC
Q psy11896 425 ---KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHP 501 (1043)
Q Consensus 425 ---~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p 501 (1043)
..++.+++..++++.+...+..||+||||.+|.|+++|||++.-|+|||.++. |.+-+ -....
T Consensus 269 ~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern-yeflq-------------wykdd 334 (753)
T KOG0464|consen 269 ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQ-------------WYKDD 334 (753)
T ss_pred ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcc-hHHHh-------------hhhhh
Confidence 34778999999999999999999999999999999999999999999998764 22111 03456
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
++++.||+.||+. |.++|.|+|||+++.+..++|.+....+.+.+++.+.++++.+++++.||||....|+ .+.+|||
T Consensus 335 lcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdt 414 (753)
T KOG0464|consen 335 LCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDT 414 (753)
T ss_pred HHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCe
Confidence 8899999999987 9999999999999999999999988999999999999999999999999999999999 7889999
Q ss_pred EecCCC-----------------------CcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy11896 580 FVTDKN-----------------------NSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636 (1043)
Q Consensus 580 l~~~~~-----------------------~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~e 636 (1043)
+++++. ....|.++++|.|||+|.|||++.+.++.+..+|+.|.+||||+.+..|++
T Consensus 415 ivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~d 494 (753)
T KOG0464|consen 415 IVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPD 494 (753)
T ss_pred EEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCC
Confidence 974321 123478899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCc--eEEEEEEEeeCCCC-CC
Q psy11896 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQ--YGRVIGTLEPLPPS-AN 713 (1043)
Q Consensus 637 tge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~--~~~v~~~~eP~~~~-~~ 713 (1043)
|||+++.||||||+|++.+|++|+||++..+++.+|+|||+|.+...........-|...+ |.++..+.+|-... +-
T Consensus 495 sgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~ 574 (753)
T KOG0464|consen 495 SGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPF 574 (753)
T ss_pred CCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccc
Confidence 9999999999999999999999999999999999999999998766544333333333333 55555555552110 01
Q ss_pred CCeEEE--eccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcc
Q psy11896 714 TKLEFI--DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV 791 (1043)
Q Consensus 714 ~~~~f~--~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~ 791 (1043)
..++|. .....+-+ +--+.||++|+..
T Consensus 575 kkiefe~~es~n~~~l-~~sqeaie~g~~n-------------------------------------------------- 603 (753)
T KOG0464|consen 575 KKIEFELAESANEGLL-DVSQEAIEEGCHN-------------------------------------------------- 603 (753)
T ss_pred eeEEeeccccccchhh-hhHHHHHHhhHHH--------------------------------------------------
Confidence 123332 11111111 0013344444444
Q ss_pred ccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhh
Q psy11896 792 WQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEI 871 (1043)
Q Consensus 792 ~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1043)
T Consensus 604 -------------------------------------------------------------------------------- 603 (753)
T KOG0464|consen 604 -------------------------------------------------------------------------------- 603 (753)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecC-cc
Q psy11896 872 SFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPI-EF 950 (1043)
Q Consensus 872 ~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~-~~ 950 (1043)
||.+|||++.|++.|++++..+.+|+--.++..+.+|+.++..+|+.++.-.++||.|.++|.+-. ++
T Consensus 604 -----------a~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~ 672 (753)
T KOG0464|consen 604 -----------ACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDP 672 (753)
T ss_pred -----------HHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCC
Confidence 455555555555555556666666655566778889999999999999999999999999999865 99
Q ss_pred hhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 951 QGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 951 ~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
+..|+.+|.+|||++..++..+. ...|.|.+|++|..||++.||..|||-|.|.++|++|+.|.++-+-+++++
T Consensus 673 ~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~dk~~il~k 748 (753)
T KOG0464|consen 673 LQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEHDKMEILKK 748 (753)
T ss_pred ccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChHHHHHHHHh
Confidence 99999999999999999998765 556999999999999999999999999999999999999999988888863
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-93 Score=790.02 Aligned_cols=725 Identities=22% Similarity=0.289 Sum_probs=556.3
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-----cC
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-----KD 266 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~ 266 (1043)
.+..+..+|||+++||-+||||+|++.|..+++---. .....-.+++|.+..|++||+++++...++.. +.
T Consensus 121 l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~----~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS 196 (971)
T KOG0468|consen 121 LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS----KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKS 196 (971)
T ss_pred hccCcceEEEEEEeeccccChhHHHHhhceecccccc----ccccccccccccchhhHhcCceEeecceEEEEecCcCce
Confidence 5667788999999999999999999999977652111 01111246899999999999999999888765 45
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC----CCHHHHHHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG----ADPYRVINQ 342 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~----~~~~~~~~~ 342 (1043)
+.+|++|||||++|++|+.++++.+|++++|+|+.+|+.-+|+.+++.+.+.++|+++||||+|++. ..+.+++-+
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~K 276 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYK 276 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999973 334444333
Q ss_pred ---HHHHhCCCceee-------eecc----ccCCCeeEEEEcccceeEeecCCC-------------CCee--------E
Q psy11896 343 ---MRQKVGHNAAFL-------QIPI----GLGSETKGIIDLIQRKAIYFEGPL-------------GDNL--------R 387 (1043)
Q Consensus 343 ---i~~~l~~~~~~~-------~~p~----~~~~~~~g~~dl~~~~~~~~~~~~-------------g~~~--------~ 387 (1043)
+...++..+..+ --|+ -..+..-|+.+.+..++.+|-... |+.+ .
T Consensus 277 LrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~ 356 (971)
T KOG0468|consen 277 LRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFV 356 (971)
T ss_pred HHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccc
Confidence 333333222211 1122 234555677777766554442211 1111 1
Q ss_pred ----eecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHHHHHH---HhhhcCccEEEEEeeccCCCC
Q psy11896 388 ----IEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIKKAIR---RSTLTRKFTPVLVGTALKNKG 458 (1043)
Q Consensus 388 ----~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~~~l~---~~~~~~~~~Pv~~gSa~~~~G 458 (1043)
....+..|.+++.+.-.++.+++....++-++..+.+ ..+++++++-..+ +.+ ...| +|.
T Consensus 357 kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lv-c~~f----fg~------ 425 (971)
T KOG0468|consen 357 KKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLV-CKSF----FGI------ 425 (971)
T ss_pred cCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHH-HHHh----ccc------
Confidence 1123457888888888888888654433334444443 2345555432211 111 1112 111
Q ss_pred HHHHHHHHHHhCCCCCCCCcccccc---C---cccceeeeCCCCCCCCCcEEEEEeeeecCC--ccEEEEEEecCeecCC
Q psy11896 459 VQTLLDAVLDYLPNPGEVTNYAIEN---G---QEDKKVVLNPSRDGKHPFIALAFKLEAGKF--GQLTYMRCYQGKLRKG 530 (1043)
Q Consensus 459 v~~Lld~i~~~lPsp~~~~~~~~~~---~---~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~--G~i~~~RV~sGtl~~g 530 (1043)
-..+.|++++++|+|.+.......+ . ......++.|+ +++|++..+.|++.... -+.+|+||+||+++.|
T Consensus 426 ~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~--~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~ 503 (971)
T KOG0468|consen 426 ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECN--ASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTG 503 (971)
T ss_pred hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhC--CCCceeEEeecceecCCceeeeeeeeeeecceeec
Confidence 1468999999999998754332222 1 11123456777 99999999999998655 5689999999999999
Q ss_pred CEEEecCCC---------cEEEeceEEEeccCCeeecCeecCCCEEEEccCc--cccCcEEecC--CCCcccccCCCC-C
Q psy11896 531 EMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CASGDTFVTD--KNNSISLESIYV-A 596 (1043)
Q Consensus 531 d~v~~~~~~---------~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~Gdtl~~~--~~~~~~~~~~~~-~ 596 (1043)
+.|.+...+ ....|+.++.+.+++..+|++|+||+++.|.|++ .....|+.+. +.....|+++.+ +
T Consensus 504 q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t 583 (971)
T KOG0468|consen 504 QDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNT 583 (971)
T ss_pred ceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCC
Confidence 999877543 2357889999999999999999999999999994 3456677732 233456777765 8
Q ss_pred CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecCCeeeEE
Q psy11896 597 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFK 675 (1043)
Q Consensus 597 ~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~p~V~yr 675 (1043)
.|+++++++|.+|++++||.+||++.++++|.+...+ +|+||++|.|.|||.|++++.+||.-| .+++++++|.|.|.
T Consensus 584 ~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~ 662 (971)
T KOG0468|consen 584 EPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFC 662 (971)
T ss_pred cceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEE
Confidence 9999999999999999999999999999999987776 899999999999999999999999999 69999999999999
Q ss_pred EeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceec
Q psy11896 676 ETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG 755 (1043)
Q Consensus 676 Eti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~ 755 (1043)
||+.+.++..+-..... .-.++.+-.|| +++|+.+-+++|.+.
T Consensus 663 Et~vetssikcfaetpn----kknkItmiaEP---------------------------lek~l~eDiEng~v~------ 705 (971)
T KOG0468|consen 663 ETVVETSSIKCFAETPN----KKNKITMIAEP---------------------------LEKGLAEDIENGVVV------ 705 (971)
T ss_pred EeeecccchhhhccCCC----ccCceeeeech---------------------------hhhhhhHHhhcCeEE------
Confidence 99988665432221111 11233333333 355666666666532
Q ss_pred eEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCcee
Q psy11896 756 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT 835 (1043)
Q Consensus 756 v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~ 835 (1043)
+.+.. +|-|.+. +.+.+|..
T Consensus 706 ----I~wn~------------------------------------------------------krl~eff--qt~YdWDl 725 (971)
T KOG0468|consen 706 ----IDWNR------------------------------------------------------KRLGEFF--QTKYDWDL 725 (971)
T ss_pred ----eccch------------------------------------------------------hhhhhhh--hcccchhh
Confidence 11100 0111111 12346666
Q ss_pred eehhhhcccccCCCcccccceeeccCCCCcccchhhHHH--HHhhhhhhhhhcCccccccccceEEEEecCcccc--CCC
Q psy11896 836 IYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFI--LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDS 911 (1043)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~--~~~ 911 (1043)
+.+ .+.|+|||+-.|||++++|+++++||+++++.. +|++||||+++|||||+||++||.|.|.|..+.+ .+.
T Consensus 726 LAa---RsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~r 802 (971)
T KOG0468|consen 726 LAA---RSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHR 802 (971)
T ss_pred hhh---cceeccCCCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCcccccc
Confidence 554 467999999999999999999999999999996 8999999999999999999999999999988875 466
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCc
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGF 989 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~ 989 (1043)
+.+|+++++|++||.||+.|.||||||+|.|||++|.+++..||.+|++|||+|...-+..| .++|+|++||.|||||
T Consensus 803 gggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGF 882 (971)
T KOG0468|consen 803 GGGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGF 882 (971)
T ss_pred CCCccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCc
Confidence 78999999999999999999999999999999999999999999999999999999887765 8999999999999999
Q ss_pred hHHHHhhcCCceEEEeEecccccCCHHHH------------------HHHHHHHHHhcCCchH
Q psy11896 990 AGDLRSSTQGKGEFSMDYSRYSPALPEVQ------------------DRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 990 ~~~lr~~t~G~~~~~~~f~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 1034 (1043)
.||||..|||+|.+++.|+||++||+|.. ...+=+-|+|||+++-
T Consensus 883 ETDLR~hTqGqa~C~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed 945 (971)
T KOG0468|consen 883 ETDLRVHTQGQAFCLSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED 945 (971)
T ss_pred ccceeeeccchhHHHHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc
Confidence 99999999999999999999999999743 3445567889999864
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-90 Score=785.58 Aligned_cols=750 Identities=24% Similarity=0.350 Sum_probs=530.9
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+...|||+++++|+|||||||+++|+..+|.++. ...+. -+++|++++|+.||||++++.+++..+++.+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~--rlagk---irfld~redeq~rgitmkss~is~~~~~~~~nli 77 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISS--RLAGK---IRFLDTREDEQTRGITMKSSAISLLHKDYLINLI 77 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEech--hhccc---eeeccccchhhhhceeeeccccccccCceEEEEe
Confidence 456678999999999999999999999999998876 23444 4689999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----CCCHHHHHHHHHHHhC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----GADPYRVINQMRQKVG 348 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~~~~~~i~~~l~ 348 (1043)
|+|||+||++++.+|.+.+|+++++||+.+|++.||..++++++..++.+++||||||++ ...+.+.+..+.+.+.
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~ 157 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIE 157 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975 5667777666665443
Q ss_pred C-CceeeeeccccCCCeeEEEE------cccceeEeecCCCCCeeEeecCc------hhHHHHHH----HHHHHHHHHH-
Q psy11896 349 H-NAAFLQIPIGLGSETKGIID------LIQRKAIYFEGPLGDNLRIEEIP------ADLKKEAE----SKRQELIEHV- 410 (1043)
Q Consensus 349 ~-~~~~~~~p~~~~~~~~g~~d------l~~~~~~~~~~~~g~~~~~~~i~------~~~~~~~~----~~r~~l~e~l- 410 (1043)
. |.+.- .-+.|++. .+.....+|++.+|+......+. +.+.+... ..+.++...+
T Consensus 158 ~vn~~i~-------~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lw 230 (887)
T KOG0467|consen 158 QVNGVIG-------QFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLW 230 (887)
T ss_pred HhhhHHH-------HhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhc
Confidence 2 11100 00111110 11134456666666665444332 11111111 1111111111
Q ss_pred -----------------------------------------hcCChHHHHHHhccC--CCCHHHHHHHHHHhhhcCccEE
Q psy11896 411 -----------------------------------------AEGDEILGEMFLEEK--SISEDDIKKAIRRSTLTRKFTP 447 (1043)
Q Consensus 411 -----------------------------------------~e~dd~l~~~~l~~~--~~~~~~l~~~l~~~~~~~~~~P 447 (1043)
...|-+-+++..... .+-..+++..+. .....|+|
T Consensus 231 gd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im~~wLP 308 (887)
T KOG0467|consen 231 GDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIMSTWLP 308 (887)
T ss_pred cceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHHHhhcc
Confidence 111111122222111 122223332221 24678888
Q ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc---Cc------ccceeeeCCCCCCCCCcEEEEEeeeecCC----
Q psy11896 448 VLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN---GQ------EDKKVVLNPSRDGKHPFIALAFKLEAGKF---- 514 (1043)
Q Consensus 448 v~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~---~~------~~~~~~~~~~~~~~~p~~~~V~K~~~d~~---- 514 (1043)
+- +..+-+.+.++|+|.+.+..+... .+ +....+..|+ +++|...||.|+...+.
T Consensus 309 ls----------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~--~~~pviv~Vskm~~~~~k~lp 376 (887)
T KOG0467|consen 309 LS----------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCS--KESPVLVFVSKMLATPLKYLP 376 (887)
T ss_pred cc----------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCC--CCCcEEEEEEeeeccchhhCc
Confidence 82 577788889999998776554332 11 1112234455 89999999999987643
Q ss_pred -c-cEEEEEEecCeecCCCEEEecCC-------CcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCC
Q psy11896 515 -G-QLTYMRCYQGKLRKGEMIYNVRT-------DKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDK 584 (1043)
Q Consensus 515 -G-~i~~~RV~sGtl~~gd~v~~~~~-------~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~ 584 (1043)
- .++|+||||||++.||.+|..+. -.+.+|.++|+++|++..+.+++++||+++|.|- ......||+ +.
T Consensus 377 ~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~-s~ 455 (887)
T KOG0467|consen 377 QSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLC-SK 455 (887)
T ss_pred hhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceec-cc
Confidence 3 58999999999999999998754 1356899999999999999999999999999983 223456888 33
Q ss_pred CCcccccC-CCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-C
Q psy11896 585 NNSISLES-IYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-N 662 (1043)
Q Consensus 585 ~~~~~~~~-~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~ 662 (1043)
....++.. ...-+|.++++|+|.+|.++++|.++|+.|+..||++++.. +++||+++.+.||+||+.|+.+|++ | +
T Consensus 456 ~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~ 533 (887)
T KOG0467|consen 456 VPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAK 533 (887)
T ss_pred CCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhc
Confidence 33333332 33468999999999999999999999999999999999987 6899999999999999999999999 6 8
Q ss_pred ccEEecCCeeeEEEeeecccceeeeeeeccCCC-----CceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHH
Q psy11896 663 CPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGS-----GQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIK 737 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~-----~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~ 737 (1043)
+++++++|.|+||||+.+.+..... -+.|.. -.--.+..++-|++. ....|.++. ...+.
T Consensus 534 i~i~vSeP~vpfrET~~e~s~l~~~--~~I~~~~~~~~~~~~ki~~~~~pl~~---~~v~~l~~~------~~ti~---- 598 (887)
T KOG0467|consen 534 IEISVSEPLVPFRETIIEDSDLLAN--LSIGQETKCLPRGQLKIKLRVVPLSG---AVVDLLDKN------SSLIS---- 598 (887)
T ss_pred eEEEecCCccchhhhccccchhhhh--hhcCcccccccccceeEEeeeccccc---ceecccccc------chhcc----
Confidence 9999999999999999766544311 011100 000223334444431 111221111 00111
Q ss_pred HHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhh
Q psy11896 738 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLV 817 (1043)
Q Consensus 738 g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l 817 (1043)
|.+.|+. ..+. .+.+....-+...+++.+..++ +..
T Consensus 599 --------~i~~~~~-~~~~---i~e~~k~~~~e~ls~~~s~~~~-------------------------------~~~- 634 (887)
T KOG0467|consen 599 --------NILRGES-RQVP---IDESQKGSFEENLSLLISLERL-------------------------------YEF- 634 (887)
T ss_pred --------chhcccc-cccc---ccccccccccccccHHHHHHHH-------------------------------hhc-
Confidence 1122211 0000 0000000000001122111111 110
Q ss_pred hcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCC---CCcccchh-hHH--HHHhhhhhhhhhcCcccc
Q psy11896 818 TKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGD---NHMVDSNE-ISF--ILAAHGFKQMCEKGCLSG 891 (1043)
Q Consensus 818 ~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~--~~~~~gf~~~~~~Gpl~~ 891 (1043)
.+ .+.... .+....|+||+...|||++.+... ++.+.++. +.. .+++.|||++|.+||||.
T Consensus 635 ek---------~~e~~~----~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~ 701 (887)
T KOG0467|consen 635 EK---------PREKLG----SFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCN 701 (887)
T ss_pred cc---------cHHHHH----HHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccc
Confidence 00 000000 112567899999999999985332 23444432 111 369999999999999999
Q ss_pred ccccceEEEEecCccccCCCC---hhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEecc
Q psy11896 892 SRVAGVRMVLKDGDNHMVDSN---EISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGN 968 (1043)
Q Consensus 892 e~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~ 968 (1043)
||++|++|.++.+.-.+.++. .+|+++++|++||+||+..+||||.|||+|+|++..+++|+||.+|++|+|+|+++
T Consensus 702 Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsE 781 (887)
T KOG0467|consen 702 EPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSE 781 (887)
T ss_pred cCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhh
Confidence 999999999999766654442 27999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCH----------------------HHHHHHHHH
Q psy11896 969 EGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALP----------------------EVQDRLVNE 1024 (1043)
Q Consensus 969 ~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~----------------------~~~~~~~~~ 1024 (1043)
++++| +|.|+|++||+|+|||++++|+.|||.|++||.||||+.++. +++.+.|+.
T Consensus 782 em~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ArkYMda 861 (887)
T KOG0467|consen 782 EMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIARKYMDA 861 (887)
T ss_pred hhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHHHHHHHH
Confidence 99875 999999999999999999999999999999999999999987 477899999
Q ss_pred HHHhcCCch-------HHHhhhhhcC
Q psy11896 1025 YQEATNPQA-------AATQKKKKKN 1043 (1043)
Q Consensus 1025 ~~~~~~~~~-------~~~~~~~~~~ 1043 (1043)
.|+|||+.- |++|+-=|||
T Consensus 862 VRRRKGLfVEEkIVE~AEKQRTLkkn 887 (887)
T KOG0467|consen 862 VRRRKGLFVEEKIVEHAEKQRTLKKN 887 (887)
T ss_pred HHhhcCCchHHHHhhhHHhhcccccC
Confidence 999999974 4566665665
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-75 Score=697.78 Aligned_cols=453 Identities=31% Similarity=0.492 Sum_probs=407.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
||||+|+||+|||||||+++|++.++.+...+.+.. +++|+.+.|++||+|+.+....+.|++++++|||||||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 699999999999999999999999888876554443 489999999999999999999999999999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecc
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
||..++.++++.+|++++|+|+.+|+..||+.+|..+...++|+++|+||||+..++++++++++.+.+...
T Consensus 76 DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~-------- 147 (594)
T TIGR01394 76 DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL-------- 147 (594)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh--------
Confidence 999999999999999999999999999999999999999999999999999998877777777766644310
Q ss_pred ccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHH
Q psy11896 359 GLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438 (1043)
Q Consensus 359 ~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~ 438 (1043)
.. ++
T Consensus 148 ----------------------------------------------------g~-~~----------------------- 151 (594)
T TIGR01394 148 ----------------------------------------------------GA-DD----------------------- 151 (594)
T ss_pred ----------------------------------------------------cc-cc-----------------------
Confidence 00 00
Q ss_pred hhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 439 STLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
...-+|++++||++|. |++.||++|.+++|+|... +++||+++||+
T Consensus 152 ---e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~---------------------~~~pl~~~V~~ 207 (594)
T TIGR01394 152 ---EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD---------------------LDEPLQMLVTN 207 (594)
T ss_pred ---ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC---------------------CCCCEEEEEEE
Confidence 0012589999999996 8999999999999999531 67899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecC
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTD 583 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~ 583 (1043)
++++++ |+++++||+||+|++||.|++.+.+ .+++|++|+.+.|.++.++++|.||||+++.|+ ++.+||||+ +
T Consensus 208 i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~-~ 286 (594)
T TIGR01394 208 LDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIA-D 286 (594)
T ss_pred EEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEe-C
Confidence 999999 9999999999999999999998763 257999999999999999999999999999999 899999999 6
Q ss_pred CCCcccccCCCCCCceEEEEEEeCCC---ccHHH------HHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHH
Q psy11896 584 KNNSISLESIYVADPVVSMSIKAVNN---KDRDN------FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654 (1043)
Q Consensus 584 ~~~~~~~~~~~~~~pv~~~~iep~~~---~d~~k------l~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~ 654 (1043)
...+..++++.+++|+++++++|++. .+..+ |.++|.++.++||+|+++.++++++++|+|+|||||+|++
T Consensus 287 ~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~ 366 (594)
T TIGR01394 287 PEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILI 366 (594)
T ss_pred CCccccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHH
Confidence 77778889999999999999999754 33333 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHH
Q psy11896 655 QRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPA 734 (1043)
Q Consensus 655 ~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~ 734 (1043)
++|+++ |+++.+++|+|+||| +.
T Consensus 367 e~lrre-g~e~~~~~P~V~yre-i~------------------------------------------------------- 389 (594)
T TIGR01394 367 ETMRRE-GFELQVGRPQVIYKE-ID------------------------------------------------------- 389 (594)
T ss_pred HHHhcc-CceEEEeCCEEEEEe-CC-------------------------------------------------------
Confidence 999999 999999999999999 51
Q ss_pred HHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchh
Q psy11896 735 IIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVL 814 (1043)
Q Consensus 735 i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~ 814 (1043)
| .
T Consensus 390 -----------g----------~--------------------------------------------------------- 391 (594)
T TIGR01394 390 -----------G----------K--------------------------------------------------------- 391 (594)
T ss_pred -----------C----------e---------------------------------------------------------
Confidence 0 0
Q ss_pred hhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccc
Q psy11896 815 NLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRV 894 (1043)
Q Consensus 815 ~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~ 894 (1043)
T Consensus 392 -------------------------------------------------------------------------------- 391 (594)
T TIGR01394 392 -------------------------------------------------------------------------------- 391 (594)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CC
Q psy11896 895 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DD 973 (1043)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~ 973 (1043)
+||||+.++|.||++|+|+||++|++|||+|++++.. ++
T Consensus 392 ----------------------------------------llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~ 431 (594)
T TIGR01394 392 ----------------------------------------KLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNG 431 (594)
T ss_pred ----------------------------------------EECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCCC
Confidence 4799999999999999999999999999999999985 46
Q ss_pred cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHH
Q psy11896 974 WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDR 1020 (1043)
Q Consensus 974 ~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~ 1020 (1043)
+..|+|.+|++|++||+++||+.|+|+|+|.+.|+||+++|++++++
T Consensus 432 ~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~~ 478 (594)
T TIGR01394 432 RTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIETR 478 (594)
T ss_pred EEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCCC
Confidence 89999999999999999999999999999999999999999987653
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-74 Score=681.85 Aligned_cols=453 Identities=32% Similarity=0.479 Sum_probs=406.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++||||+|+||+|+|||||+++|++.++.+...+... .+++|+.+.|+++|+|+......+.|+++.+++|||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~-----~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ-----ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc-----eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 4699999999999999999999998888776533222 26899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|..++.++++.+|++++|+|+.+|+..||+.+|+.+...++|.++|+||+|+.++++++.++++.+.+..-
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l------ 151 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL------ 151 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999888888888877755310
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+ +.+
T Consensus 152 ---------------------------------------------------------~------~~~------------- 155 (607)
T PRK10218 152 ---------------------------------------------------------D------ATD------------- 155 (607)
T ss_pred ---------------------------------------------------------C------ccc-------------
Confidence 0 000
Q ss_pred HHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEE
Q psy11896 437 RRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALA 506 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 506 (1043)
...-+||+++||++|. |+..||++|.+++|+|.. ++++||.++|
T Consensus 156 -----~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~---------------------~~~~Pl~~~V 209 (607)
T PRK10218 156 -----EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV---------------------DLDGPFQMQI 209 (607)
T ss_pred -----cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC---------------------CCCCCeEEEE
Confidence 0012699999999998 699999999999999952 1678999999
Q ss_pred EeeeecCC-ccEEEEEEecCeecCCCEEEecCC-Cc--EEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 507 FKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT-DK--KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 507 ~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~-~~--~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
||++++++ |+++++||+||+|++||.|++.+. ++ +++|++||.+.|.++.++++|.||||+++.|+ ++.+||||+
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~ 289 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVC 289 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEe
Confidence 99999999 999999999999999999999876 43 68999999999999999999999999999999 899999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCC---CccHHHHHH---HHHHHhc---CCCeeEEEEcCCCCcEEEEechhhHHHH
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVN---NKDRDNFSK---AVQRFTK---EDPTFHFFYDPESKETLVSGMGELHLEI 652 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~---~~d~~kl~~---~L~~l~~---eDpsl~~~~~~etge~il~g~GelHlei 652 (1043)
+...+..++.+++++|++++++.|++ ..|..|+.. ++.+|.+ +||+|+++.++++++++|+|+|||||+|
T Consensus 290 -~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~i 368 (607)
T PRK10218 290 -DTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSV 368 (607)
T ss_pred -cCCCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHH
Confidence 56667778899999999999999999 778888754 5566665 9999999999999999999999999999
Q ss_pred HHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchH
Q psy11896 653 YAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732 (1043)
Q Consensus 653 ~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~ 732 (1043)
++++|+++ |+|+.+++|+|+|||| + |
T Consensus 369 l~e~lrre-g~e~~~~~P~V~yret-------~-------g--------------------------------------- 394 (607)
T PRK10218 369 LIENMRRE-GFELAVSRPKVIFREI-------D-------G--------------------------------------- 394 (607)
T ss_pred HHHHHHhC-CceEEEeCCEEEEEEE-------C-------C---------------------------------------
Confidence 99999999 9999999999999998 0 0
Q ss_pred HHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccc
Q psy11896 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGS 812 (1043)
Q Consensus 733 ~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~ 812 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (607)
T PRK10218 395 -------------------------------------------------------------------------------- 394 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccc
Q psy11896 813 VLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGS 892 (1043)
Q Consensus 813 v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e 892 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (607)
T PRK10218 395 -------------------------------------------------------------------------------- 394 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK- 971 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~- 971 (1043)
+.+|||+.++|.||++|+|+||++|++|||++++++..
T Consensus 395 -----------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~ 433 (607)
T PRK10218 395 -----------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDG 433 (607)
T ss_pred -----------------------------------------EEeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECC
Confidence 01499999999999999999999999999999999985
Q ss_pred CCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC-HHHH
Q psy11896 972 DDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL-PEVQ 1018 (1043)
Q Consensus 972 ~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~-~~~~ 1018 (1043)
+++..|+|.+|++|++||+++|||+|+|+|.|.+.|+||+++| +++.
T Consensus 434 ~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~~ 481 (607)
T PRK10218 434 KGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVG 481 (607)
T ss_pred CCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCCC
Confidence 5689999999999999999999999999999999999999999 6643
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-74 Score=685.27 Aligned_cols=461 Identities=32% Similarity=0.522 Sum_probs=400.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----Cee
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DHN 268 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~ 268 (1043)
++.++||||+|+||+|||||||+++|++.++.+.+.+ ...+++|+++.|++||+|+++....+.|+ ++.
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~------~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ 75 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE------MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYI 75 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc------cccccccCchHHhhcCCcccccEEEEEEEccCCCcEE
Confidence 4567899999999999999999999999888776531 12468999999999999999999989886 688
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhC
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~ 348 (1043)
++|||||||.+|..++.++++.+|++|+|+|+.+|++.+|...|..+...++|+++|+||+|+..+++++..+++.+.++
T Consensus 76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg 155 (600)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG 155 (600)
T ss_pred EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998889999999999999976655444444433222
Q ss_pred CCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 349 HNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 349 ~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
..
T Consensus 156 ~~------------------------------------------------------------------------------ 157 (600)
T PRK05433 156 ID------------------------------------------------------------------------------ 157 (600)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
..+++++||++|.|++.|+++|.+.+|+|... +++|+.++|||
T Consensus 158 ----------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~---------------------~~~pl~~~Vfd 200 (600)
T PRK05433 158 ----------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD---------------------PDAPLKALIFD 200 (600)
T ss_pred ----------------cceEEEEecCCCCCHHHHHHHHHHhCccccCC---------------------CCCCceEEEEE
Confidence 01378899999999999999999999999532 67899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEec
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVT 582 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~ 582 (1043)
+++|++ |.++++||++|+|++||.|++.+++..++|.+|+.+.+ +..+++++.||||+.+. |+ ++++||||+
T Consensus 201 ~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~- 278 (600)
T PRK05433 201 SWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTIT- 278 (600)
T ss_pred EEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEE-
Confidence 999998 99999999999999999999999999999999996655 88899999999998875 44 678999998
Q ss_pred CCCCc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHH
Q psy11896 583 DKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQ 655 (1043)
Q Consensus 583 ~~~~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~ 655 (1043)
+...+ ..+++++.|+|+++++++|.+.+|.++|.++|++|..|||||+++ +||++.++.| ||+|||||+++
T Consensus 279 ~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~e 356 (600)
T PRK05433 279 LAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQE 356 (600)
T ss_pred CCCCccccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHH
Confidence 44444 468889999999999999999999999999999999999999986 7899999999 99999999999
Q ss_pred HHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHH
Q psy11896 656 RMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAI 735 (1043)
Q Consensus 656 rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i 735 (1043)
||+++||+++.+++|.|+||||+++. ..+.|.|
T Consensus 357 rL~~e~~~~v~~~~P~V~Yreti~~g--------------------------------~~~~~~~--------------- 389 (600)
T PRK05433 357 RLEREFDLDLITTAPSVVYEVTLTDG--------------------------------EVIEVDN--------------- 389 (600)
T ss_pred HHHHhhCceEEEecCEEEEEEEEeCC--------------------------------cEEEEEC---------------
Confidence 99999999999999999999999751 0122221
Q ss_pred HHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhh
Q psy11896 736 IKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLN 815 (1043)
Q Consensus 736 ~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~ 815 (1043)
| .|+|
T Consensus 390 -----------p-~~~p--------------------------------------------------------------- 394 (600)
T PRK05433 390 -----------P-SKLP--------------------------------------------------------------- 394 (600)
T ss_pred -----------c-ccCC---------------------------------------------------------------
Confidence 1 1221
Q ss_pred hhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCcccccccc
Q psy11896 816 LVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVA 895 (1043)
Q Consensus 816 ~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~ 895 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (600)
T PRK05433 395 -------------------------------------------------------------------------------- 394 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcE
Q psy11896 896 GVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWV 975 (1043)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 975 (1043)
|+++. -.|||||+.++|.+|++|+|+||+++++|||++++++..++..
T Consensus 395 --------------ds~~~------------------~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~ 442 (600)
T PRK05433 395 --------------DPGKI------------------EEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRV 442 (600)
T ss_pred --------------Ccccc------------------ceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCCeE
Confidence 01100 1589999999999999999999999999999999999977789
Q ss_pred EEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 976 TIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 976 ~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
.|+|.+|++|+ ++|.++|||+|+|.|+|.+.|+||++.
T Consensus 443 ~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 443 ELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred EEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 99999999999 999999999999999999999999976
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-73 Score=670.01 Aligned_cols=450 Identities=30% Similarity=0.510 Sum_probs=406.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||+|+||+|+|||||+++|++.++.+...|.++++. ....++|+++.|++||+|+..+...+.|+++.+++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 346789999999999999999999999999999988887543 1234689999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.||..++.++++.+|++|+|+|+.+|+..+|+.+|+++...++|+++|+||+|+.++++.+.++++++.++..+.|
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p 165 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAP 165 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
+++|++.+..|+|++|+++++++.|....|.. ..+.+.+++.||+++++|+++..+ +++.
T Consensus 166 ~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~ 225 (526)
T PRK00741 166 ITWPIGMGKRFKGVYDLYNDEVELYQPGEGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLR 225 (526)
T ss_pred EEeccccCCceeEEEEeecceeeecccCCCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHH
Confidence 99999999999999999999999996433321 123457788999999999998754 5566
Q ss_pred HHH-----------HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCc
Q psy11896 434 KAI-----------RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPF 502 (1043)
Q Consensus 434 ~~l-----------~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 502 (1043)
..+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++... ...+.+ .+.|+
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~---~~~~~ 293 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------EREVEP---TEEKF 293 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------ceeecC---CCCce
Confidence 666 8899999999999999999999999999999999999764321 011222 35679
Q ss_pred EEEEEeeee---cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 503 IALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 503 ~~~V~K~~~---d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+|+|||+.+ +++ |+++|+|||||+|++|+.|+|.++++++++++++.++|++++++++|.||||+++.|+ ++++|
T Consensus 294 ~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~G 373 (526)
T PRK00741 294 SGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIG 373 (526)
T ss_pred EEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccC
Confidence 999999985 345 9999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cEEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHH
Q psy11896 578 DTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 657 (1043)
Q Consensus 578 dtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL 657 (1043)
|||+ +.. +..++++++|+|+++++|+|+++.|.+||.+||++|.+||| +++.++++|||++|+|||+|||||+++||
T Consensus 374 DTL~-~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL 450 (526)
T PRK00741 374 DTFT-QGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRL 450 (526)
T ss_pred CCcc-CCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHH
Confidence 9998 443 67788999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HhhcCccEEecCCeeeEEEeee
Q psy11896 658 EREYNCPVVLGKPKVAFKETLV 679 (1043)
Q Consensus 658 ~~~~~v~i~~~~p~V~yrEti~ 679 (1043)
+++||+++.+++|.|++-.-|.
T Consensus 451 ~~ey~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 451 KNEYNVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHhCCEEEEecCCccEEEEEe
Confidence 9999999999999999988775
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-73 Score=677.86 Aligned_cols=456 Identities=32% Similarity=0.542 Sum_probs=395.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--C---eeEEEE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--D---HNINII 272 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~li 272 (1043)
+||||+++||+|+|||||+++|++.++.+.... .+ .+++|+++.|+++|+|+......+.|+ + +.++||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~---~~---~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~li 75 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE---MR---EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLI 75 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc---cc---ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEE
Confidence 589999999999999999999999888776421 11 468999999999999999999888885 3 789999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||.+|..++.++++.+|++|+|+|+.+|++.+|...|..+...++|+++|+||+|+...+.++..+++.+.++.
T Consensus 76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~--- 152 (595)
T TIGR01393 76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL--- 152 (595)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC---
Confidence 99999999999999999999999999999999999999998888889999999999998765544433433332221
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
T Consensus 153 -------------------------------------------------------------------------------- 152 (595)
T TIGR01393 153 -------------------------------------------------------------------------------- 152 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
...+++++||++|.|++.|++.|.+++|+|... +++|+.++||++++|
T Consensus 153 -----------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~---------------------~~~pl~~~V~~~~~d 200 (595)
T TIGR01393 153 -----------DASEAILASAKTGIGIEEILEAIVKRVPPPKGD---------------------PDAPLKALIFDSHYD 200 (595)
T ss_pred -----------CcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC---------------------CCCCeEEEEEEEEEe
Confidence 011478899999999999999999999999532 678999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecCCCC
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTDKNN 586 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~~~~ 586 (1043)
++ |.++++||++|+|++||+|++.+++..++|.+|+.+.+.. .+++++.||||+.+. |+ ++++||||+ +..+
T Consensus 201 ~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~-~~~~ 278 (595)
T TIGR01393 201 NYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTIT-HVKN 278 (595)
T ss_pred CCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEE-CCCC
Confidence 98 9999999999999999999999999899999999777665 899999999998774 43 678999998 4444
Q ss_pred c--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHHHHh
Q psy11896 587 S--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMER 659 (1043)
Q Consensus 587 ~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~rL~~ 659 (1043)
+ .+++++..++|+++++++|.+.+|.++|.++|++|..|||||+++ +||++.++.| +|+|||||+++||++
T Consensus 279 ~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~r 356 (595)
T TIGR01393 279 PAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLER 356 (595)
T ss_pred ccccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHH
Confidence 4 367889999999999999999999999999999999999999987 5899988885 999999999999999
Q ss_pred hcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHH
Q psy11896 660 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGF 739 (1043)
Q Consensus 660 ~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~ 739 (1043)
+||+++.+++|+|+||||++.. + .+.|.|
T Consensus 357 e~~~~v~~~~P~V~Yreti~~g---------------~-----------------~~~~~~------------------- 385 (595)
T TIGR01393 357 EFNLDLITTAPSVIYRVYLTNG---------------E-----------------VIEVDN------------------- 385 (595)
T ss_pred HhCCeeEEecCEEEEEEEecCC---------------c-----------------EEEEEC-------------------
Confidence 9999999999999999998731 1 122221
Q ss_pred HHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhc
Q psy11896 740 KQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTK 819 (1043)
Q Consensus 740 ~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~ 819 (1043)
| .|+|+.|.
T Consensus 386 -------p-~~~p~~~~--------------------------------------------------------------- 394 (595)
T TIGR01393 386 -------P-SDLPDPGK--------------------------------------------------------------- 394 (595)
T ss_pred -------c-ccCCCccc---------------------------------------------------------------
Confidence 1 24443220
Q ss_pred ccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEE
Q psy11896 820 RHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRM 899 (1043)
Q Consensus 820 rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~ 899 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (595)
T TIGR01393 395 -------------------------------------------------------------------------------- 394 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEE
Q psy11896 900 VLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIY 978 (1043)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~ 978 (1043)
-|.|||||+.++|.+|++|+|+||+++++|||++++++..+ +...|+
T Consensus 395 --------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~ 442 (595)
T TIGR01393 395 --------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELI 442 (595)
T ss_pred --------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEE
Confidence 16789999999999999999999999999999999999854 589999
Q ss_pred EEechhhh-cCchHHHHhhcCCceEEEeEeccccc
Q psy11896 979 AEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSP 1012 (1043)
Q Consensus 979 a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~ 1012 (1043)
|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 443 ~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 443 YEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred EEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 99999997 99999999999999999999999997
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=645.95 Aligned_cols=448 Identities=29% Similarity=0.479 Sum_probs=395.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecC-CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||+|+||+|+|||||+++|++..+.+...|.+++ +....+++|+++.|++||+|+.++...+.|+++.+++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 4467899999999999999999999999999999888873 322346799999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+..|+..++..+|+.+...++|+++|+||+|+..+++.+.++.+++.++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEee------cCchh----HHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIE------EIPAD----LKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.++|++.+..|.|++|++.+.+++|....|...... +.|.. ..+.++++|+++ |.+.+.|+++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~------ 239 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEF------ 239 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcccc------
Confidence 999999999999999999999999965434433222 12211 123456677777 7776655432
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcE
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 503 (1043)
+ +++++.+.++|||||||++|.||+.|||+|++++|+|.++... ...+.+ .++|++
T Consensus 240 ----~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~---------~~~~~~---~~~~~~ 295 (527)
T TIGR00503 240 ----D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD---------TRTVEP---TEEKFS 295 (527)
T ss_pred ----C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------ceecCC---CCCCee
Confidence 2 3567789999999999999999999999999999999754311 112223 367899
Q ss_pred EEEEeeee--cC-C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCc
Q psy11896 504 ALAFKLEA--GK-F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGD 578 (1043)
Q Consensus 504 ~~V~K~~~--d~-~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 578 (1043)
++|||+.+ |+ + |+++|+|||||+|++|++|++.++++++++++++.++|++++++++|.||||+++.|+ ++++||
T Consensus 296 ~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GD 375 (527)
T TIGR00503 296 GFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGD 375 (527)
T ss_pred EEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCC
Confidence 99999998 74 5 9999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred EEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHH
Q psy11896 579 TFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 579 tl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~ 658 (1043)
||+ +. .+..++++++|+|+++++|+|+++.|.+||.+||++|.+||| +++.++++|+|++|+|||+|||||+++||+
T Consensus 376 tl~-~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~ 452 (527)
T TIGR00503 376 TFT-QG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLK 452 (527)
T ss_pred Eec-CC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHH
Confidence 999 43 367788899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred hhcCccEEecCCeeeEEE
Q psy11896 659 REYNCPVVLGKPKVAFKE 676 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrE 676 (1043)
++||+++.+++|.|+.-=
T Consensus 453 ~ey~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 453 EEYNVEARYEPVNVATAR 470 (527)
T ss_pred HHhCCeEEEeCCCceEEE
Confidence 999999999999998543
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=556.31 Aligned_cols=365 Identities=31% Similarity=0.490 Sum_probs=319.2
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC---eeE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNI 269 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i 269 (1043)
..|.+++||++||+|+|||||||+++|+..+|.+.+ .....+++|.++.|++||||+++...++.|++ +.+
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~------~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylL 127 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN------NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLL 127 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCC------CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEE
Confidence 456789999999999999999999999999986654 23335689999999999999999999999998 999
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
||||||||+||+.|+.+.+..|||+++||||.+|+++||...+..|.+.++.+|.|+||+|++.++++.+..++.+.|..
T Consensus 128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876653
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
...
T Consensus 208 ~~~----------------------------------------------------------------------------- 210 (650)
T KOG0462|consen 208 PPA----------------------------------------------------------------------------- 210 (650)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
+++.+||++|.|+..+|++|++.+|+|... .++||.+++|.+
T Consensus 211 -----------------~~i~vSAK~G~~v~~lL~AII~rVPpP~~~---------------------~d~plr~Lifds 252 (650)
T KOG0462|consen 211 -----------------EVIYVSAKTGLNVEELLEAIIRRVPPPKGI---------------------RDAPLRMLIFDS 252 (650)
T ss_pred -----------------ceEEEEeccCccHHHHHHHHHhhCCCCCCC---------------------CCcchHHHhhhh
Confidence 467889999999999999999999999753 689999999999
Q ss_pred eecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCC--eeecCeecCCCEEEEcc-C-ccccCcEEecCC
Q psy11896 510 EAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE--MEDVEEVLAGDIFALFG-V-DCASGDTFVTDK 584 (1043)
Q Consensus 510 ~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~--~~~v~~a~aGdIv~i~g-l-~~~~Gdtl~~~~ 584 (1043)
+.|++ |.|+++||..|.+++||+|....+++...+..+-+|.... ..+++...+|+|++-.+ + +...|||+++..
T Consensus 253 ~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 253 EYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred hhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecc
Confidence 99999 9999999999999999999999888777777666555433 34455566677776666 4 778999998422
Q ss_pred --CCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCc----EEEEechhhHHHHHHHHHH
Q psy11896 585 --NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKE----TLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 585 --~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge----~il~g~GelHlei~~~rL~ 658 (1043)
.....++.++-..|++++...|.+.+|.+.|.+++.+|..+|+++.+..+ .++. +.+.++|.|||+|+.+||+
T Consensus 333 ~~~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle 411 (650)
T KOG0462|consen 333 VTKAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLE 411 (650)
T ss_pred cCcccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHH
Confidence 23455777788899999999999999999999999999999999988763 4442 5789999999999999999
Q ss_pred hhcCccEEecCCeeeEEEeee
Q psy11896 659 REYNCPVVLGKPKVAFKETLV 679 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrEti~ 679 (1043)
+|||.++.+++|.|+||--..
T Consensus 412 ~Eyg~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 412 REYGAELIVTPPTVPYRVVYS 432 (650)
T ss_pred HhcCceeeecCCcceEEEEec
Confidence 999999999999999996543
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-63 Score=533.64 Aligned_cols=364 Identities=33% Similarity=0.550 Sum_probs=326.9
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----Ce
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DH 267 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~ 267 (1043)
.++.++|||++|++|.|||||||.++|+..++.++. ...-..++|+++.|++||||++.....+.|+ .|
T Consensus 3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~------Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y 76 (603)
T COG0481 3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE------REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETY 76 (603)
T ss_pred ccchhhccceEEEEEecCCcchHHHHHHHHhcCcCh------HHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEE
Confidence 356778999999999999999999999999887765 2333568999999999999999999998885 38
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
.+||||||||+||+-|+.++|..|.|+++||||+.|++.||..-.-+|...++-++-|+||+|++.++++.+.+++.+.+
T Consensus 77 ~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~i 156 (603)
T COG0481 77 VLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDII 156 (603)
T ss_pred EEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 427 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~ 427 (1043)
|....
T Consensus 157 Gid~~--------------------------------------------------------------------------- 161 (603)
T COG0481 157 GIDAS--------------------------------------------------------------------------- 161 (603)
T ss_pred CCCcc---------------------------------------------------------------------------
Confidence 75321
Q ss_pred CHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 428 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
-.+.+||++|.||+++|++|++.+|+|... +++|+.|++|
T Consensus 162 -------------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~---------------------~~~pLkALif 201 (603)
T COG0481 162 -------------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKGD---------------------PDAPLKALIF 201 (603)
T ss_pred -------------------hheeEecccCCCHHHHHHHHHhhCCCCCCC---------------------CCCcceEEEE
Confidence 124579999999999999999999999642 7899999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE-ccC----ccccCcEEe
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL-FGV----DCASGDTFV 581 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i-~gl----~~~~Gdtl~ 581 (1043)
..+.|++ |.++++||+.|++++||++....++++..|..+..+.. ...+.+++.||+++-+ +|+ |+..|||++
T Consensus 202 DS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT 280 (603)
T COG0481 202 DSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTIT 280 (603)
T ss_pred eccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEe
Confidence 9999999 99999999999999999999999999999999988877 7778899999999864 455 778999998
Q ss_pred cCC-CCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHH
Q psy11896 582 TDK-NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQ 655 (1043)
Q Consensus 582 ~~~-~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~ 655 (1043)
... ....++++++-..|++++.+.|.+..|.+.|.++|.+|..+|.+|.++ +||++.+-.| +|-|||||+.+
T Consensus 281 ~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqE 358 (603)
T COG0481 281 LASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQE 358 (603)
T ss_pred ccCCCccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHH
Confidence 322 233568888889999999999999999999999999999999999876 6888887666 79999999999
Q ss_pred HHHhhcCccEEecCCeeeEEEeeec
Q psy11896 656 RMEREYNCPVVLGKPKVAFKETLVQ 680 (1043)
Q Consensus 656 rL~~~~~v~i~~~~p~V~yrEti~~ 680 (1043)
||+|||++++....|.|.|+-..+.
T Consensus 359 RLeREf~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 359 RLEREFDLDLITTAPSVVYKVELTD 383 (603)
T ss_pred HHHHhhCcceEecCCceEEEEEEcC
Confidence 9999999999999999999977653
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=527.22 Aligned_cols=454 Identities=31% Similarity=0.484 Sum_probs=401.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
..+|||||++|+|||||||++.|+.+++.......+.. +.||+...|++|||||-+....+.|++++||++||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E-----RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE-----RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhh-----hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 45899999999999999999999999999887655544 4899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.||.+|+++.+...|+++++|||.+|..+||+.+++.|.+.+++.|+|+||+|++.+.++++++++.+.|-
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-------- 149 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV-------- 149 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999998887765432
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
.|...|+.
T Consensus 150 ----------------------------------------------------~L~A~deQ-------------------- 157 (603)
T COG1217 150 ----------------------------------------------------ELGATDEQ-------------------- 157 (603)
T ss_pred ----------------------------------------------------HhCCChhh--------------------
Confidence 11111111
Q ss_pred HHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEE
Q psy11896 437 RRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALA 506 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 506 (1043)
--+|++..||..|. .+.+|+++|.+++|+|... .++||.++|
T Consensus 158 -------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~---------------------~d~PlQ~qv 209 (603)
T COG1217 158 -------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD---------------------LDEPLQMQV 209 (603)
T ss_pred -------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC---------------------CCCCeEEEE
Confidence 12477777776654 4689999999999999632 789999999
Q ss_pred EeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 507 FKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 507 ~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
+...++++ |+|..+||++|++|+||.|.....+ ...||++++-+.|-++.++++|.||||++|+|+ +...|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 99999999 9999999999999999999887644 456899999999999999999999999999999 889999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCCCc----c-----HHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHH
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVNNK----D-----RDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEI 652 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~~~----d-----~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei 652 (1043)
+++.+..++.+.+.+|.+++.+-.++.- + -.++.+.|.+=...+-+|+++-.++-..+.++|.|||||.|
T Consensus 290 -d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsI 368 (603)
T COG1217 290 -DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSI 368 (603)
T ss_pred -CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHH
Confidence 8888889999999999999999876642 2 23678888888888999999876666889999999999999
Q ss_pred HHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchH
Q psy11896 653 YAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732 (1043)
Q Consensus 653 ~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~ 732 (1043)
+++-|||| |.|+.+|.|+|.||| +-
T Consensus 369 LiE~MRRE-GfEl~VsrP~Vi~ke-id----------------------------------------------------- 393 (603)
T COG1217 369 LIENMRRE-GFELQVSRPEVIIKE-ID----------------------------------------------------- 393 (603)
T ss_pred HHHHhhhc-ceEEEecCceEEEEe-cC-----------------------------------------------------
Confidence 99999999 999999999999998 21
Q ss_pred HHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccc
Q psy11896 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGS 812 (1043)
Q Consensus 733 ~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~ 812 (1043)
|.
T Consensus 394 -------------G~----------------------------------------------------------------- 395 (603)
T COG1217 394 -------------GV----------------------------------------------------------------- 395 (603)
T ss_pred -------------Cc-----------------------------------------------------------------
Confidence 10
Q ss_pred hhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccc
Q psy11896 813 VLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGS 892 (1043)
Q Consensus 813 v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e 892 (1043)
T Consensus 396 -------------------------------------------------------------------------------- 395 (603)
T COG1217 396 -------------------------------------------------------------------------------- 395 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
..||+-.+.|.||+++.|.|+..|..|+|...+|.+.+
T Consensus 396 ------------------------------------------~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g 433 (603)
T COG1217 396 ------------------------------------------KCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG 433 (603)
T ss_pred ------------------------------------------CcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC
Confidence 13777788999999999999999999999999999875
Q ss_pred -CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHH
Q psy11896 973 -DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQD 1019 (1043)
Q Consensus 973 -~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~ 1019 (1043)
|+..+...+|..-..||.+++-++|+|.|.....|+||+++.+++..
T Consensus 434 ~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~~ 481 (603)
T COG1217 434 KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIGG 481 (603)
T ss_pred CCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccccc
Confidence 69999999999999999999999999999999999999999987643
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-61 Score=515.42 Aligned_cols=448 Identities=30% Similarity=0.519 Sum_probs=376.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..+.|++|||.|+|+|||||++.|+.+.+.|...|.+.+.. .-.+.+|+++.|++|||++.++...|+|+++.+||+||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 45679999999999999999999999999999999887653 34567999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.||+.++.+.|.++|.||+||||..|+++||+.+++.|+.+++|++-||||||+...++-+.++++.+.|+..+.|+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCe-eE---eecCc-hhHHHHH-HHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDN-LR---IEEIP-ADLKKEA-ESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~-~~---~~~i~-~~~~~~~-~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
.|||+.+..|+|+.++.+..-..|.+..+.. .. ...+. ++..... ...++.+.|.+ +|+..- ..+++
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~-----EL~~~a--~~~Fd 241 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL-----ELVQGA--GNEFD 241 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH-----HHHHhh--ccccC
Confidence 9999999999999999998888887643211 11 11111 1111111 11222222221 111000 01122
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
.++++.+...|||+|||++|.||+.+|++++++.|+|..++... -.+++ .+..+.+||||
T Consensus 242 --------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~---------~~v~p---~e~kfsGFVFK 301 (528)
T COG4108 242 --------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT---------REVEP---TEDKFSGFVFK 301 (528)
T ss_pred --------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc---------CcccC---CCCccceEEEE
Confidence 23456788999999999999999999999999999998664220 12233 24459999999
Q ss_pred eeec--CC--ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecC
Q psy11896 509 LEAG--KF--GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTD 583 (1043)
Q Consensus 509 ~~~d--~~--G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~ 583 (1043)
+... |. -+|||+||.||.+..|+++...++|+..+++.-..+++++++.+++|.||||++|..- ..+.|||++ .
T Consensus 302 IQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t-~ 380 (528)
T COG4108 302 IQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFT-E 380 (528)
T ss_pred EEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceee-c
Confidence 9874 33 7899999999999999999999999999999999999999999999999999999877 678999999 3
Q ss_pred CCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCc
Q psy11896 584 KNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663 (1043)
Q Consensus 584 ~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v 663 (1043)
+ ..+.|++++...|-++..|..+++....+|.+||+.|.+|-. +++.....+++.+|...|.||+||+.+||+.||++
T Consensus 381 G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~v 458 (528)
T COG4108 381 G-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNV 458 (528)
T ss_pred C-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCC
Confidence 3 678899999999999999999999999999999999999987 46666677899999999999999999999999999
Q ss_pred cEEecCCeee
Q psy11896 664 PVVLGKPKVA 673 (1043)
Q Consensus 664 ~i~~~~p~V~ 673 (1043)
++.+.+..+.
T Consensus 459 e~~~e~~~~~ 468 (528)
T COG4108 459 EAVFEPVNFS 468 (528)
T ss_pred eEEEeeccce
Confidence 9998764443
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=415.67 Aligned_cols=270 Identities=62% Similarity=0.964 Sum_probs=259.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++.++.+.+.+.++++ ++++|+.+.|++||+|+++....+.|+++++++||||||.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC---ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 79999999999999999999999999888888887 568999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++.++++.+|++++|+|+.+|+..+|..+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|+..
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
..+|+|++|++.++++.|....|......++|+++.+.++++|++|+|.++|.||+|||+||++.+++.+++..+|++++
T Consensus 158 ~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 158 EDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred CCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999954457777888999999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
+.+.++|||||||.+|.|++.|||+|+.++|+|
T Consensus 238 ~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=382.00 Aligned_cols=265 Identities=35% Similarity=0.545 Sum_probs=242.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCC-ccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++|||+++||+|+|||||+++|++.++.+.+.|.+++. ..-.+++|+.+.|++||+|+......+.|+++++++|||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 37999999999999999999999999999998888731 01145799999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|..++..+++.+|++|+|+|+..|+..++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999999988999999999999999999
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCC-eeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGD-NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~-~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
|++.+..|.|++|+++++++.|....|. .....++|+++. |.+++.|++|||+|+++..++.+++...
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 9999999999999999999999432233 445566776643 6788999999999999999999999999
Q ss_pred HHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
++++++.+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=370.36 Aligned_cols=268 Identities=39% Similarity=0.598 Sum_probs=254.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++..+.+.+.+.+..| .+++|+.+.|..+++|+......+.|+++.+++||||||.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG---TTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC---cccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH
Confidence 68999999999999999999988888888888776 467899999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++..+++.+|++++|+|+..|...++..+|+++...++|.++|+||+|+.++++.+.++.+++.++..+.++++|+..
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
+.++.|++|++.+.++.|.. |......++|.++.+.+.++|..|+|.+++.||+|||+||++.+++.+++..++++++
T Consensus 158 ~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~ 235 (268)
T cd04170 158 GDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRAL 235 (268)
T ss_pred CCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999964 3445667899999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
..+.++|||||||+++.|++.||+++.+++|+|
T Consensus 236 ~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 236 RAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=356.43 Aligned_cols=237 Identities=43% Similarity=0.663 Sum_probs=220.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++.++.+.+.|.++.+ .+++|+.+.|++||+|+......+.|+++++++||||||.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~---~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG---TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC---cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 69999999999999999999999999998888877 467999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++..+++.+|++++|+|+.+|+..++..+|+.+.+.++|+++|+||+|+.++++++.++++++.++..+.|+++|.
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~-- 155 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG-- 155 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
+.+.+. .. .+.|++|+|.++|.||+|||+||++.+++.+++..++++++
T Consensus 156 ------~~~~~~--------------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~ 204 (237)
T cd04168 156 ------LAPNIC--------------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARI 204 (237)
T ss_pred ------Eeeeee--------------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 221110 11 13357899999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 205 ~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 205 AKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=347.43 Aligned_cols=279 Identities=20% Similarity=0.217 Sum_probs=229.2
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~ 73 (1043)
.+.|| |-+.+||+|.+.+.+..... .+..||+|+|..+...+|.+..|.++||+|... +..++..++..
T Consensus 5 ~VAIV-GRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 5 VVAIV-GRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred EEEEE-CCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 35555 88888877776555554433 788999999999999999999999999999973 45668889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
||++|||+|+..|++..+..+.++++..++|+++|+||+|-.+.+ +...+ ++.+.+.++++|
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e-----~~~~e-------------fyslG~g~~~~I 145 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE-----ELAYE-------------FYSLGFGEPVPI 145 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh-----hhHHH-------------HHhcCCCCceEe
Confidence 999999999999999999999999998889999999999975321 11111 144667788999
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||.+|.|+.+|++.+...++ ..+..... ......+|||+|.||+|||||+|+|+...+.+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~-~~e~~~~~------------~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I------- 205 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLP-PDEEEEEE------------EETDPIKIAIIGRPNVGKSSLINAILGEERVI------- 205 (444)
T ss_pred ehhhccCHHHHHHHHHhhcC-Cccccccc------------ccCCceEEEEEeCCCCCchHHHHHhccCceEE-------
Confidence 99999999999999998774 21111111 00345779999999999999999998666554
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC----------ch-HHHHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FT-VEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d----------f~-~e~~~~l~~~D~~ilVvda~~ 302 (1043)
.....|+|+++....++|++..+.+|||+|... |+ ..+..++..+|.+++|+||.+
T Consensus 206 -------------v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~ 272 (444)
T COG1160 206 -------------VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE 272 (444)
T ss_pred -------------ecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC
Confidence 234789999999999999999999999999533 33 346788899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
|+..|...+...+.+.+.++++|+||+|+...
T Consensus 273 ~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 273 GISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 99999999999999999999999999998753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=330.26 Aligned_cols=276 Identities=19% Similarity=0.165 Sum_probs=218.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+...... .....+|+|++.....+.+++..+.+|||||+.+ +...+..+++.
T Consensus 2 ~~I~iv-G~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIV-GRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 577788 9999999999777665543 3566899999999999999999999999999987 44456778899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|+|+|++.+....+..+..++...++|+++|+||+|+.+.. . ...+.. ...+.+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-~----~~~~~~-------------~lg~~~~~~i 142 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-A----DAYEFY-------------SLGLGEPYPI 142 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch-h----hHHHHH-------------hcCCCCCEEE
Confidence 999999999999888888888888988899999999999975421 1 111111 1222346889
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|++++++.+....+... . . .......+|+++|++|+|||||+++|+.....+
T Consensus 143 Sa~~g~gv~~l~~~I~~~~~~~~-----~-~---------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~------- 200 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEELPEEE-----E-E---------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVI------- 200 (435)
T ss_pred EeeCCCCHHHHHHHHHhhCCccc-----c-c---------cccccceEEEEECCCCCCHHHHHHHHhCCCcee-------
Confidence 99999999999999886332100 0 0 001234789999999999999999998543222
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-----------HHHHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-----------~e~~~~l~~~D~~ilVvda~~ 302 (1043)
....+|+|.+.....+.+++..+.+|||||+.+.. ..+.++++.+|++|+|+|+.+
T Consensus 201 -------------~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~ 267 (435)
T PRK00093 201 -------------VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE 267 (435)
T ss_pred -------------ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 22367889888888888899999999999975422 224567899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|...++..++.++.+.++|+++|+||+|+.
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 268 GITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 999999999999999999999999999986
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=331.93 Aligned_cols=276 Identities=20% Similarity=0.189 Sum_probs=219.6
Q ss_pred cceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc--------chHHHHHHHhhhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV--------DFTVEVERALRVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~--------~~~~~~~~~~~~a 74 (1043)
|+.++ |..++||+|.....+.... ..+..||+|++.....+.+++..+.+|||||+. .+...+..+++.+
T Consensus 1 ~i~iv-G~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIV-GRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEE-CCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 45566 9999999998666554432 356789999999999999999999999999973 4566778889999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|++++|+|++.+....+..+..++++.++|+++|+||+|+.+.+.. . .++ +...+.+++++|
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~-~-~~~----------------~~lg~~~~~~vS 141 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV-A-AEF----------------YSLGFGEPIPIS 141 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc-H-HHH----------------HhcCCCCeEEEe
Confidence 9999999999999999999999999899999999999998653321 1 111 112344678999
Q ss_pred ecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecC
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG 234 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~ 234 (1043)
|++|.|+++|++.+...+++..+. ........+|+++|++|+|||||+++|+.....+
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~~~~--------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------- 199 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEEEEE--------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-------- 199 (429)
T ss_pred CCcCCChHHHHHHHHHhcCccccc--------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeee--------
Confidence 999999999999998776531100 0011234689999999999999999998543211
Q ss_pred CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH-----------HHHHHhHhcCeEEEEEeCCCC
Q psy11896 235 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCAVGG 303 (1043)
Q Consensus 235 ~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~-----------e~~~~l~~~D~~ilVvda~~g 303 (1043)
....+|+|.+.....+.+++..+.+|||||+.++.. .+..+++.+|++|+|+|+.+|
T Consensus 200 ------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~ 267 (429)
T TIGR03594 200 ------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG 267 (429)
T ss_pred ------------cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 123568888888788888899999999999866432 234578999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 304 ~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...++..+++.+.+.++|+++|+||+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 268 ITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 99999999999999999999999999987
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=333.02 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=216.1
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~ 72 (1043)
+.|+.|+ |..++||+|...+.+.... ..+..||+|++.....+.+++..+.+|||||+.. +...+..+++
T Consensus 38 ~~~V~Iv-G~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVV-GRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3577777 9999999999776665543 4578999999999999999999999999999862 4555777899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|||+|++++.+..+..+..++...++|+++|+||+|+.....+ . .+.+ ...+..+++
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~-~----~~~~-------------~~g~~~~~~ 178 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD-A----AALW-------------SLGLGEPHP 178 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh-h----HHHH-------------hcCCCCeEE
Confidence 999999999999988888888888888889999999999998643211 1 1111 111223478
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+. . ......++|+++|++|+|||||+++|+.....+
T Consensus 179 iSA~~g~gi~eL~~~i~~~l~~~~~~---------~-----~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~------ 238 (472)
T PRK03003 179 VSALHGRGVGDLLDAVLAALPEVPRV---------G-----SASGGPRRVALVGKPNVGKSSLLNKLAGEERSV------ 238 (472)
T ss_pred EEcCCCCCcHHHHHHHHhhccccccc---------c-----cccccceEEEEECCCCCCHHHHHHHHhCCCccc------
Confidence 99999999999999998766431100 0 001235889999999999999999997432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC---------chHH--HHHHhHhcCeEEEEEeCC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVE--VERALRVLDGAILVLCAV 301 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d---------f~~e--~~~~l~~~D~~ilVvda~ 301 (1043)
.+...|+|.+.....+.+++..+.||||||..+ |... ...+++.+|++++|+|+.
T Consensus 239 --------------~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~ 304 (472)
T PRK03003 239 --------------VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDAS 304 (472)
T ss_pred --------------ccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 223567787777777888899999999999632 2222 234678999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 302 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 302 ~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...+...++..+...++|+++|+||+|+..
T Consensus 305 ~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 305 EPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99999999888888889999999999999864
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=312.46 Aligned_cols=268 Identities=26% Similarity=0.353 Sum_probs=213.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+.+||+++||+|||||||+++|+...... +... ....+.+|..++|++||+|++.....+.++++.++||||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~---g~~~--~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAER---GLNQ--AKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG 84 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhh---cccc--ccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence 346899999999999999999998543221 1111 01123689999999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.++++.+|++++|+|+.+|+..||++++.++...++| +++|+||||+.. .++..+.+.+.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~--~~~~~~~i~~~--------- 153 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD--DEELLELVEME--------- 153 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc--hHHHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 568899999863 11111111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+...
T Consensus 154 ----------------------------------------------------------------------------i~~~ 157 (394)
T PRK12736 154 ----------------------------------------------------------------------------VREL 157 (394)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
++........+|++++||++|. ++..|++++.+++|.|... .++||+++|+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------------------~~~p~r~~I~ 216 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD---------------------TDKPFLMPVE 216 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC---------------------CCCCeEEEEE
Confidence 1111111234699999999983 6899999999999977421 5789999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
+++.+++ |.+++|||.+|+|+.||.|++.+. +...+|.+|.. ...++++|.|||.+++ .|+ ++..|++
T Consensus 217 ~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~v 292 (394)
T PRK12736 217 DVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQV 292 (394)
T ss_pred EEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceE
Confidence 9999988 999999999999999999998765 45678888874 3568899999999965 787 5789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 l~ 294 (394)
T PRK12736 293 LA 294 (394)
T ss_pred Ee
Confidence 98
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=313.95 Aligned_cols=269 Identities=27% Similarity=0.370 Sum_probs=212.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....+||+++||+|+|||||+++|++..+.+... . . .....+|+.+.|++||+|++.....+.+++.+++|+|||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~--~-~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP 83 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--K--A-KKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--c--c-cccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence 3456899999999999999999999876655321 0 0 012368999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
||.+|...+.+++..+|++++|+|+.+|+..||+.++..+...++| +++++||||+... ++..+.+.+.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~~-------- 153 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVELE-------- 153 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999 6688999998642 2222221111
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
+..
T Consensus 154 -----------------------------------------------------------------------------l~~ 156 (409)
T CHL00071 154 -----------------------------------------------------------------------------VRE 156 (409)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHhhhcCccEEEEEeeccCCC------------------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNK------------------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSR 496 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~------------------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~ 496 (1043)
.|+........+|++++||++|. |+..||++|.+++|.|...
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-------------------- 216 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERD-------------------- 216 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCC--------------------
Confidence 11111111223577777777764 4689999999999887421
Q ss_pred CCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecC--CCcEEEeceEEEeccCCeeecCeecCCCEEEE--cc
Q psy11896 497 DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG 571 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~--~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~g 571 (1043)
.+.||+++|++++.+++ |.+++|||++|+++.||.|.+.+ .+...+|.+|... .+++++|.|||++++ .|
T Consensus 217 -~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~ 291 (409)
T CHL00071 217 -TDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRG 291 (409)
T ss_pred -CCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcC
Confidence 57899999999999988 99999999999999999998654 3456788888742 357899999999965 47
Q ss_pred C---ccccCcEEe
Q psy11896 572 V---DCASGDTFV 581 (1043)
Q Consensus 572 l---~~~~Gdtl~ 581 (1043)
+ ++..|++|+
T Consensus 292 i~~~~i~~G~vl~ 304 (409)
T CHL00071 292 IQKEDIERGMVLA 304 (409)
T ss_pred CCHHHcCCeEEEe
Confidence 6 578999998
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=335.98 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=215.3
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
.++.|+ |.+.+||+|...+.+.... ..+..||+|++......++++.++.+|||||+.. +...+..+++.
T Consensus 276 ~~V~Iv-G~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 276 GVVAIV-GRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 456666 9999999998766654332 3567899999999999999999999999999863 55667788999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|||+|++.++...+..+...++..++|+++|+||+|+..... ...+.+ ...+..++++
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~-----~~~~~~-------------~lg~~~~~~i 416 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY-----DAAEFW-------------KLGLGEPYPI 416 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh-----hHHHHH-------------HcCCCCeEEE
Confidence 9999999999998888888888888889999999999999864221 111111 1122345789
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|++.+...++... .. .........++|+++|++|+|||||+++|+.....+
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~~~------~~------~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~------- 477 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKVAE------KT------SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV------- 477 (712)
T ss_pred ECCCCCCchHHHHHHHHhccccc------cc------ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc-------
Confidence 99999999999999987664310 00 000111235799999999999999999998443211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC---------chHH--HHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVE--VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d---------f~~e--~~~~l~~~D~~ilVvda~~ 302 (1043)
.....|+|.+.....+.+++..+.||||||+.+ |... ...+++.+|++++|+|+.+
T Consensus 478 -------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~ 544 (712)
T PRK09518 478 -------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ 544 (712)
T ss_pred -------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 123567787777777888999999999999642 2221 2455789999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+.+...++..+...++|+++|+||+|+..
T Consensus 545 ~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 545 PISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 9999999999988888999999999999864
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=313.93 Aligned_cols=270 Identities=23% Similarity=0.251 Sum_probs=217.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee---------eecC-CccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------EVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.+.+ .+.. ...+++++|+.++|++||+|++.+...+.|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3457999999999999999999999988877533 1122 23456789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCCe-EEEEeccCCCCCC---
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD--- 335 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~--- 335 (1043)
+.++|||||||.+|..++..+++.+|++++|||+.+|+ ..||+++|.++...++|. |+|+||||+...+
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 489999999999999985 5899999965432
Q ss_pred --HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 336 --PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 336 --~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++++.+++.+.++.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 22222322222210
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCcccc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAI 481 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~ 481 (1043)
.-....-+|++.+||++|.|+. .|+++|... +.|..
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~------ 228 (446)
T PTZ00141 181 -------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR------ 228 (446)
T ss_pred -------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc------
Confidence 0001112688888999999985 488887654 33421
Q ss_pred ccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCe
Q psy11896 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560 (1043)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~ 560 (1043)
..+.|+.+.|..++..++ |++..|||.+|+|+.||.|.+.+.+...+|.+|. ....++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~----~~~~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVE----MHHEQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEE----ecCcccCE
Confidence 156899999999999888 9999999999999999999999988888999987 33567999
Q ss_pred ecCCCEEEE--ccC---ccccCcEEe
Q psy11896 561 VLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 561 a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
|.|||.+++ .++ ++..|++|+
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEe
Confidence 999999985 455 578899998
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=322.65 Aligned_cols=303 Identities=25% Similarity=0.341 Sum_probs=239.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++||+|||||||+++|.... +. ....+|+|.+.....+.|+++.++||||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--------v~-------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPG 346 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--------VA-------------AGEAGGITQHIGAYQVETNGGKITFLDTPG 346 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------cc-------------ccccCceeeeccEEEEEECCEEEEEEECCC
Confidence 345789999999999999999995211 11 112578999888888999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|...+.++++.+|++|+|+|+.+|+..||..+|..+...++|+++|+||||+.+++++.+..++.+ .+.
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~------- 418 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL------- 418 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc-------
Confidence 999999999999999999999999999999999999999999999999999999987665544443322 000
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+.+.
T Consensus 419 ------------------------------------------------------------~~e~---------------- 422 (787)
T PRK05306 419 ------------------------------------------------------------VPEE---------------- 422 (787)
T ss_pred ------------------------------------------------------------cHHH----------------
Confidence 0000
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
.+..+|++++||++|.|++.|+++|...... .+ +.++ ++.|+.++||+++.+++ |
T Consensus 423 -----~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~~----------------l~~~--~~~~~~g~V~es~~dkg~G 478 (787)
T PRK05306 423 -----WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-LE----------------LKAN--PDRPARGTVIEAKLDKGRG 478 (787)
T ss_pred -----hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-hh----------------cccC--CCCCcEEEEEEEEEcCCCe
Confidence 1223689999999999999999998753210 00 1122 67899999999999998 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEecCCCC-------
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFVTDKNN------- 586 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~~~~~~------- 586 (1043)
.++++||++|+|+.||.|++.. +.++++.+.+.+..++++|.||++|.|.|| ++ .+||||+.-.+.
T Consensus 479 ~v~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~ 553 (787)
T PRK05306 479 PVATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIA 553 (787)
T ss_pred EEEEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHH
Confidence 9999999999999999999853 467788888878889999999999999999 66 899999831110
Q ss_pred ----------------cccccCCC--CCC---ceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEE
Q psy11896 587 ----------------SISLESIY--VAD---PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFY 633 (1043)
Q Consensus 587 ----------------~~~~~~~~--~~~---pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~ 633 (1043)
...++.+. ... +.+.+.|.+......+.|..+|.+|..+++.+.+-.
T Consensus 554 ~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 554 EYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 11122221 111 268999999999999999999999999999887743
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=312.20 Aligned_cols=270 Identities=22% Similarity=0.249 Sum_probs=214.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee--ee-----c---CCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH--EV-----R---GKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~v-----~---~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.+.+ .+ + +...+++++|..++|++||+|++.....+.|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3468999999999999999999999998776532 11 1 112346789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD--- 335 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--- 335 (1043)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|. ..||++++.++...++| +++|+||||+...+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999883 27999999999999997 57789999986222
Q ss_pred --HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 336 --PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 336 --~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++++.++++..++
T Consensus 165 ~~~~~i~~ei~~~l~----------------------------------------------------------------- 179 (447)
T PLN00043 165 ARYDEIVKEVSSYLK----------------------------------------------------------------- 179 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 2222222222111
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCcccc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAI 481 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~ 481 (1043)
...+ ...-+|++.+||++|.|+. .|+++|.+ +|.|...
T Consensus 180 ----------~~g~--------------~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~----- 229 (447)
T PLN00043 180 ----------KVGY--------------NPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRP----- 229 (447)
T ss_pred ----------HcCC--------------CcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccc-----
Confidence 0000 0012467777999998874 47888865 4444321
Q ss_pred ccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCe
Q psy11896 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560 (1043)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~ 560 (1043)
.+.||++.|..++..++ |++..|||.+|++++||.|.+.+.+...+|.+|. ....++++
T Consensus 230 ----------------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~----~~~~~v~~ 289 (447)
T PLN00043 230 ----------------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVE----MHHESLQE 289 (447)
T ss_pred ----------------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEE----ECCeEeCE
Confidence 57899999999999887 9999999999999999999999988888999987 34678999
Q ss_pred ecCCCEEEE--ccC---ccccCcEEe
Q psy11896 561 VLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 561 a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
|.|||.+++ .++ ++..|+.|+
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEc
Confidence 999999985 455 578899998
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=305.17 Aligned_cols=268 Identities=27% Similarity=0.368 Sum_probs=211.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+.+||+++||+|||||||+++|++... ..|.... ...+.+|..++|++||+|++.....+.+++++++||||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~--~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAA--RAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhcccc--cccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCc
Confidence 4468999999999999999999985422 1111111 1134689999999999999999988888889999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... ++..+.+.+.+
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i-------- 154 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEV-------- 154 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999976 58999998631 11111111100
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (394)
T TIGR00485 155 -----------------------------------------------------------------------------REL 157 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
++........+|++++||++|. ++..|++++.+++|.|... .++||+++|+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~---------------------~~~p~r~~V~ 216 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE---------------------TDKPFLMPIE 216 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC---------------------CCCCeEEEEE
Confidence 1100011223689999999875 5678999999998877422 5689999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecC--CCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~--~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
+++.+++ |.+++|||.+|++++||.|++.+ .+...+|.+|.. ...++++|.|||.+++ .|+ ++..|++
T Consensus 217 ~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~v 292 (394)
T TIGR00485 217 DVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMV 292 (394)
T ss_pred EEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEE
Confidence 9999988 99999999999999999999875 356778999884 3467899999999975 676 5789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 l~ 294 (394)
T TIGR00485 293 LA 294 (394)
T ss_pred Ee
Confidence 98
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=287.00 Aligned_cols=277 Identities=25% Similarity=0.311 Sum_probs=214.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...|++++||+|||||||+.+|++..|.+.... .-.++..+++++|.+++|++||+|++.+...|+.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 457899999999999999999999999987621 1223347889999999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++++|||||.||..++..+.+.+|++|+||||..| +.+||++++-++...++. .|+++||||....+. +.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde-~r 164 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE-ER 164 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH-HH
Confidence 999999999999999999999999999999999988 999999999999999996 677899999987553 22
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++++...+.. |++.+
T Consensus 165 f~ei~~~v~~--------------------------------------------------------l~k~~--------- 179 (428)
T COG5256 165 FEEIVSEVSK--------------------------------------------------------LLKMV--------- 179 (428)
T ss_pred HHHHHHHHHH--------------------------------------------------------HHHHc---------
Confidence 2222221110 00000
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCccc
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQED 487 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~~~ 487 (1043)
.. ...-+|.+.+||++|.++. .||++|. .+..|..
T Consensus 180 ------G~--------------~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~------------ 226 (428)
T COG5256 180 ------GY--------------NPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER------------ 226 (428)
T ss_pred ------CC--------------CccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC------------
Confidence 00 0001223333666665552 4555555 3333321
Q ss_pred ceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCE
Q psy11896 488 KKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI 566 (1043)
Q Consensus 488 ~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdI 566 (1043)
..+.||++-|.+++.... |.+..+||.+|.|++||.|++.+.+..-.|+++. .+.++++.+.+||.
T Consensus 227 ---------~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie----~~~~~~~~a~~GD~ 293 (428)
T COG5256 227 ---------PLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIE----MHHEEISQAEPGDN 293 (428)
T ss_pred ---------CCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeee----ecccccccCCCCCe
Confidence 158999999999998555 9999999999999999999999888788888887 55889999999999
Q ss_pred EE--EccC---ccccCcEEecCCCCc
Q psy11896 567 FA--LFGV---DCASGDTFVTDKNNS 587 (1043)
Q Consensus 567 v~--i~gl---~~~~Gdtl~~~~~~~ 587 (1043)
++ +.|+ |++.||.+. +..++
T Consensus 294 i~~~vrgv~~~dI~~Gdv~~-~~~n~ 318 (428)
T COG5256 294 VGFNVRGVEKNDIRRGDVIG-HSDNP 318 (428)
T ss_pred EEEEecCCchhccCCccEec-cCCCC
Confidence 97 5676 789999998 44433
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=299.40 Aligned_cols=268 Identities=26% Similarity=0.354 Sum_probs=211.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..||+++||+|||||||+++|++..... +.. .....+.+|..++|+++|+|++.....+.+++.+++|+||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~---g~~--~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GGG--EAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhc---CCc--ccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence 446899999999999999999998643211 110 101124689999999999999999988888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +|+||||+.. .++..+.+.+.+
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~--~~~~~~~~~~ei-------- 154 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEV-------- 154 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc--hHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999976 5799999863 111121111100
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (396)
T PRK12735 155 -----------------------------------------------------------------------------REL 157 (396)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
++..-..+..+|++.+||++| .|+..|+++|.+.+|.|... .++||+++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~---------------------~~~p~r~~ 216 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA---------------------IDKPFLMP 216 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc---------------------CCCCeEEE
Confidence 000000112368888899888 47899999999999977421 57899999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccC
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASG 577 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 577 (1043)
|..++..++ |.++.|||.+|++++||.|++.+. +...+|.+|.. ...++++|.|||.+++ .|+ ++..|
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG 292 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERG 292 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcc
Confidence 999999888 999999999999999999998764 35678888873 3578999999999986 677 57899
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
++|+
T Consensus 293 ~vl~ 296 (396)
T PRK12735 293 QVLA 296 (396)
T ss_pred eEEE
Confidence 9999
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=301.07 Aligned_cols=265 Identities=27% Similarity=0.370 Sum_probs=210.4
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....+||+++||+|+|||||+++|++..+.+... ...+ ...+|..+.|+.+|+|++.....+.++++.++|||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~--~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP 152 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGS--APKK---YDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 152 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccc--cccc---cccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC
Confidence 3457899999999999999999999877765321 1111 2468999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHH----HHHHHhCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVIN----QMRQKVGHN 350 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~----~i~~~l~~~ 350 (1043)
||.+|..++..+++.+|++++|||+.+|+..||++++..+...++| +++++||||+.. .++..+ ++.+.+..
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--~~~~~~~i~~~i~~~l~~- 229 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLELVELEVRELLSS- 229 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC--HHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999 667899999864 222222 22222211
Q ss_pred ceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHH
Q psy11896 351 AAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISED 430 (1043)
Q Consensus 351 ~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~ 430 (1043)
T Consensus 230 -------------------------------------------------------------------------------- 229 (478)
T PLN03126 230 -------------------------------------------------------------------------------- 229 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCccEEEEEeeccCCC------------------CHHHHHHHHHHhCCCCCCCCccccccCcccceeee
Q psy11896 431 DIKKAIRRSTLTRKFTPVLVGTALKNK------------------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVL 492 (1043)
Q Consensus 431 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~------------------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~ 492 (1043)
.-.....+|++.+||++|. ++..|+++|.++.|.|...
T Consensus 230 --------~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~---------------- 285 (478)
T PLN03126 230 --------YEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ---------------- 285 (478)
T ss_pred --------cCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc----------------
Confidence 0001122455555555542 3568999999987766421
Q ss_pred CCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 493 NPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 493 ~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
.+.||.++|..++..++ |.+..|+|.+|++++||.|++.+.+ ...+|.+|.. ...++++|.|||.+++
T Consensus 286 -----~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~----~~~~v~~A~aG~~v~l 356 (478)
T PLN03126 286 -----TDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEM----FQKILDEALAGDNVGL 356 (478)
T ss_pred -----cccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEE----CCeECCEEeCCceeee
Confidence 46899999999999888 9999999999999999999998654 4578888873 3568999999999986
Q ss_pred --ccC---ccccCcEEe
Q psy11896 570 --FGV---DCASGDTFV 581 (1043)
Q Consensus 570 --~gl---~~~~Gdtl~ 581 (1043)
.|+ ++..|++|+
T Consensus 357 ~L~~i~~~di~rG~VL~ 373 (478)
T PLN03126 357 LLRGIQKADIQRGMVLA 373 (478)
T ss_pred eccCCcHHHcCCccEEe
Confidence 676 578999998
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=297.38 Aligned_cols=268 Identities=27% Similarity=0.359 Sum_probs=210.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....||+++||+|||||||+++|++..... +. ........+|+.++|++||+|++.....+.+++.+++|+||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~---g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GG--AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhc---cC--CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 456899999999999999999998643211 11 1111123689999999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+..++..+|++++|+|+.+|+..||+.++.++...++|.+ +++||+|+.. .++.++.+.+.+
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~--~~~~~~~~~~~i-------- 154 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEV-------- 154 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc--hHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999986 5899999863 112222111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (396)
T PRK00049 155 -----------------------------------------------------------------------------REL 157 (396)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
+...-.....+|++.+||++|. |+..|+++|.+++|.|... .+.||.+.
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~---------------------~~~p~r~~ 216 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA---------------------IDKPFLMP 216 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC---------------------CCCCeEEE
Confidence 1100001123577788888764 6789999999999877421 57899999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccC
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASG 577 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 577 (1043)
|..++..++ |.++.|||.+|++++||+|.+.+. +...+|.+|.. ..+++++|.|||.+++ .|+ ++..|
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G 292 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEM----FRKLLDEGQAGDNVGALLRGIKREDVERG 292 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEE----CCcEeCEEcCCCEEEEEeCCCCHHHCCcc
Confidence 999999888 999999999999999999988754 56678888873 3468999999999986 676 57889
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
++|+
T Consensus 293 ~vl~ 296 (396)
T PRK00049 293 QVLA 296 (396)
T ss_pred eEEe
Confidence 9999
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=302.96 Aligned_cols=270 Identities=26% Similarity=0.312 Sum_probs=216.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++..+.+.... .......+++++|+.++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3468999999999999999999999988876431 001112356789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC--CcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHH---HHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPY---RVI 340 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~--g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~---~~~ 340 (1043)
+.++|||||||.+|...+..+++.+|++++|+|+.+ ++..++..++..+...++ |+++|+||+|+...+.+ +..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999888887 47889999998753221 111
Q ss_pred HHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11896 341 NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420 (1043)
Q Consensus 341 ~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~ 420 (1043)
+++.+.+.
T Consensus 164 ~~i~~~l~------------------------------------------------------------------------ 171 (425)
T PRK12317 164 EEVSKLLK------------------------------------------------------------------------ 171 (425)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred HhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 421 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 421 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
..-......|++.+||++|.|++. |+++|.. +|.|...
T Consensus 172 -----------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~------------ 221 (425)
T PRK12317 172 -----------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKP------------ 221 (425)
T ss_pred -----------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccc------------
Confidence 000011135788899999999975 8888654 5655321
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 567 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv 567 (1043)
.+.||.+.|..++..++ |++..|||.+|+++.||.|.+.+.+...+|.+|.. ...++++|.|||.+
T Consensus 222 ---------~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v 288 (425)
T PRK12317 222 ---------TDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM----HHEELPQAEPGDNI 288 (425)
T ss_pred ---------cCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE----CCcccCEECCCCeE
Confidence 57899999999999888 99999999999999999999998888889999883 45689999999999
Q ss_pred EE--ccC---ccccCcEEe
Q psy11896 568 AL--FGV---DCASGDTFV 581 (1043)
Q Consensus 568 ~i--~gl---~~~~Gdtl~ 581 (1043)
++ .|+ ++..|++|+
T Consensus 289 ~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred EEEECCCCHHHccCccEec
Confidence 75 566 568899998
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=298.93 Aligned_cols=301 Identities=25% Similarity=0.335 Sum_probs=230.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGH 277 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG~ 277 (1043)
.++|+++||+|||||||+++|.... + .....+|+|.+.....+.|++. .++|||||||
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~--v-------------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh 145 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTK--V-------------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGH 145 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCC--c-------------------ccccCCceeecceEEEEEECCCcEEEEEECCCC
Confidence 3679999999999999999996321 1 0122468888888888888655 8999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++.+.+|++++|+|+.+|+..||.++++.+...++|+++++||+|+.++++++..+.+.+ ++.
T Consensus 146 e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~-------- 216 (587)
T TIGR00487 146 EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGL-------- 216 (587)
T ss_pred cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhh--------
Confidence 99999999999999999999999999999999999999999999999999999986665443332221 000
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
..+
T Consensus 217 -----------------------------------------------------------~~~------------------ 219 (587)
T TIGR00487 217 -----------------------------------------------------------VPE------------------ 219 (587)
T ss_pred -----------------------------------------------------------hHH------------------
Confidence 000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+...|++.+||++|.|+++|+++|...- ...+ +.. +++.|+.++|+++..+++ |.
T Consensus 220 ---~~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~~----------------l~~--~~~~~~~~~V~ev~~~~g~G~ 277 (587)
T TIGR00487 220 ---DWGGDTIFVPVSALTGDGIDELLDMILLQS-EVEE----------------LKA--NPNGQASGVVIEAQLDKGRGP 277 (587)
T ss_pred ---hcCCCceEEEEECCCCCChHHHHHhhhhhh-hhcc----------------ccC--CCCCCceeEEEEEEEeCCCcE
Confidence 011224788899999999999999986421 0000 011 267899999999999988 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEecCCCC--------
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFVTDKNN-------- 586 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~~~~~~-------- 586 (1043)
+++++|++|+|++||.|.+.+. ..+|..++.. ....+++|.||+++.+.|+ ++ .+||+|..-.+.
T Consensus 278 v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~---~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~ 352 (587)
T TIGR00487 278 VATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDE---NGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAE 352 (587)
T ss_pred EEEEEEEeCEEeCCCEEEECCC--ccEEEEEECC---CCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHH
Confidence 9999999999999999988753 3456666543 3456899999999999999 55 789999721110
Q ss_pred ---------------cccccCCCC-----CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEE
Q psy11896 587 ---------------SISLESIYV-----ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFY 633 (1043)
Q Consensus 587 ---------------~~~~~~~~~-----~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~ 633 (1043)
...+..+.. ..|.+.+.|++......+.|.++|.++..+++++.+..
T Consensus 353 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 353 KRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 111222211 23889999999999999999999999999999988754
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=293.02 Aligned_cols=270 Identities=26% Similarity=0.351 Sum_probs=208.2
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
......||+++||+|||||||+++|+.... +.|..... ....+|..++|++||+|++.....+++++++++|+||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~~~~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAV--AFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHH---Hhhcccce--eeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 345578999999999999999999974321 11111111 1125899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
|||.+|...+..++..+|++++|+|+.+|+..||++++.++...++|. ++++||||+.. .++..+.+.+.+.
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~--~~~~~~~i~~~i~----- 204 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD--DEELLELVEMELR----- 204 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC--HHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999995 68899999863 1122221111000
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
T Consensus 205 -------------------------------------------------------------------------------- 204 (447)
T PLN03127 205 -------------------------------------------------------------------------------- 204 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCccEEEEEeecc---CCCC-------HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcE
Q psy11896 434 KAIRRSTLTRKFTPVLVGTAL---KNKG-------VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~---~~~G-------v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 503 (1043)
..+...-.....+|++.+||+ +|.| +..|++++.+++|.|... .++||+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~---------------------~~~pfr 263 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV---------------------LDKPFL 263 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc---------------------cccceE
Confidence 000000001123577777765 4444 789999999999977421 568999
Q ss_pred EEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCC----CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---c
Q psy11896 504 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT----DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---D 573 (1043)
Q Consensus 504 ~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~----~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~ 573 (1043)
+.|..++..++ |.+..|||.+|++++||.|++.+. +...+|.+|... ..+++++.|||.+++ .|+ +
T Consensus 264 ~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~ 339 (447)
T PLN03127 264 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKRED 339 (447)
T ss_pred eeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHH
Confidence 99999999888 999999999999999999988753 346788888733 457899999999985 676 5
Q ss_pred cccCcEEe
Q psy11896 574 CASGDTFV 581 (1043)
Q Consensus 574 ~~~Gdtl~ 581 (1043)
+..|++|+
T Consensus 340 i~rG~Vl~ 347 (447)
T PLN03127 340 VQRGQVIC 347 (447)
T ss_pred CCCccEEe
Confidence 78999999
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=294.81 Aligned_cols=267 Identities=22% Similarity=0.281 Sum_probs=205.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCcee--eeeec-----C-----CccccccccchhhhhhcCceEeeeeEEEEecCee
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR-----G-----KDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~-----~-----~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 268 (1043)
||+++||+|||||||+++|++.++.+.+ .+.+. . ...+++++|..++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999999998875 22221 1 2345779999999999999999999999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
++|||||||.+|..++..++..+|++++|+|+.+|+..||++++..+...++| +++|+||||+...+ .+.++.+.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988886 67799999987533 22222222211
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 427 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~ 427 (1043)
. .++
T Consensus 161 ~-----------------------------------------------------------------------~~~----- 164 (406)
T TIGR02034 161 L-----------------------------------------------------------------------AFA----- 164 (406)
T ss_pred H-----------------------------------------------------------------------HHH-----
Confidence 1 000
Q ss_pred CHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceeeeCCC
Q psy11896 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495 (1043)
Q Consensus 428 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~ 495 (1043)
+. ... ..+|++.+||++|.|++. |+++|.. +|.|..
T Consensus 165 ---------~~-~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~-------------------- 212 (406)
T TIGR02034 165 ---------EQ-LGF-RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD-------------------- 212 (406)
T ss_pred ---------HH-cCC-CCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC--------------------
Confidence 00 000 124677789999999864 6666654 444421
Q ss_pred CCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC--
Q psy11896 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-- 572 (1043)
Q Consensus 496 ~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-- 572 (1043)
..+.|+.+.|..++...+ +.-..|+|.+|+|++||.|.+.+.+...+|.+|... ..++++|.|||.+++..-
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCc
Confidence 146788877666554322 222569999999999999999888888899999733 346899999999987542
Q ss_pred -ccccCcEEe
Q psy11896 573 -DCASGDTFV 581 (1043)
Q Consensus 573 -~~~~Gdtl~ 581 (1043)
++..|++|+
T Consensus 288 ~~i~rG~vl~ 297 (406)
T TIGR02034 288 IDISRGDLLA 297 (406)
T ss_pred cccCCccEEE
Confidence 567899998
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=294.89 Aligned_cols=274 Identities=25% Similarity=0.316 Sum_probs=214.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEec
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 265 (1043)
....+||+++||+|+|||||+++|++..+.+.... ...+...+++++|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34578999999999999999999998888765321 01122345678999999999999999999999999
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC---cchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVIN 341 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g---~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~ 341 (1043)
+..++|||||||.+|...+..+++.+|++++|+|+.++ ...++..++..+...+. |+++|+||+|+...+.+ .++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~-~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE-EFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH-HHH
Confidence 99999999999999999999999999999999999999 78888888777777775 57889999999753321 111
Q ss_pred HHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy11896 342 QMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 421 (1043)
Q Consensus 342 ~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~ 421 (1043)
.+.+.+
T Consensus 163 ~~~~ei-------------------------------------------------------------------------- 168 (426)
T TIGR00483 163 AIKKEV-------------------------------------------------------------------------- 168 (426)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111100
Q ss_pred hccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccce
Q psy11896 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKK 489 (1043)
Q Consensus 422 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 489 (1043)
...++..-.....+|++.+||++|.|+.. |+++|.+ +|.|..
T Consensus 169 -----------~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~-------------- 222 (426)
T TIGR00483 169 -----------SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK-------------- 222 (426)
T ss_pred -----------HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC--------------
Confidence 00000000111235788889999999874 8888854 554421
Q ss_pred eeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEE
Q psy11896 490 VVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA 568 (1043)
Q Consensus 490 ~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~ 568 (1043)
..+.||.+.|..++..++ |+++.|||.+|+++.||.|.+.+.+...+|.+|. ....++++|.|||.++
T Consensus 223 -------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aG~~v~ 291 (426)
T TIGR00483 223 -------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIE----MHHEQIEQAEPGDNIG 291 (426)
T ss_pred -------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEE----ECCcccCEEcCCCEEE
Confidence 156899999999999888 9999999999999999999999888888999997 3346789999999998
Q ss_pred E--ccC---ccccCcEEe
Q psy11896 569 L--FGV---DCASGDTFV 581 (1043)
Q Consensus 569 i--~gl---~~~~Gdtl~ 581 (1043)
+ .++ ++..|++|+
T Consensus 292 i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 292 FNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred EEECCCChhhcccceEEe
Confidence 6 565 578899998
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=295.18 Aligned_cols=272 Identities=24% Similarity=0.297 Sum_probs=207.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCcee--eeeec----------CCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISE--MHEVR----------GKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
....||+++||+|+|||||+++|++.++.+.. .+.+. +...+++++|+.++|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578999999999999999999999998875 22221 1224567899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~~i 343 (1043)
++++++|||||||.+|..++..+++.+|++++|||+.+|+..||+.++..+...++ |+++|+||||+...+. +.++.+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999988886 5788999999874332 222222
Q ss_pred HHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 344 RQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.+.+. .+
T Consensus 184 ~~~l~-----------------------------------------------------------------------~~-- 190 (474)
T PRK05124 184 REDYL-----------------------------------------------------------------------TF-- 190 (474)
T ss_pred HHHHH-----------------------------------------------------------------------HH--
Confidence 22110 00
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceee
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 491 (1043)
+.. .......|++.+||++|.|++. |+++| +.+|.|..
T Consensus 191 ------------~~~-~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~---------------- 240 (474)
T PRK05124 191 ------------AEQ-LPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV---------------- 240 (474)
T ss_pred ------------HHh-cCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC----------------
Confidence 000 0001235778889999998864 55543 44554421
Q ss_pred eCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 492 ~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
..+.|+.+.|..++...+ ..-..|||.+|+|+.||+|++.+.+...+|.+|... ..++++|.|||.+++.
T Consensus 241 -----~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 241 -----VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLV 311 (474)
T ss_pred -----CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEE
Confidence 156788888877654333 122468999999999999999998888999999833 3468999999999875
Q ss_pred cC---ccccCcEEe
Q psy11896 571 GV---DCASGDTFV 581 (1043)
Q Consensus 571 gl---~~~~Gdtl~ 581 (1043)
.- ++..|++|+
T Consensus 312 L~~~~~i~rG~VL~ 325 (474)
T PRK05124 312 LEDEIDISRGDLLV 325 (474)
T ss_pred eCCccccCCccEEE
Confidence 43 577899999
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=284.51 Aligned_cols=251 Identities=19% Similarity=0.226 Sum_probs=196.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe------------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW------------ 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 264 (1043)
+...||+++||+|||||||+.+|+. ..+|.+++|.+||+|++..+..+.+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg------------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~ 93 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSG------------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCY 93 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhC------------------CCcccchhhHHhCCchhccccccccccCcccCCcccc
Confidence 3457899999999999999999972 2456778999999999887765421
Q ss_pred ---c------------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-cchHHHHHHHHHHhcCCC-
Q psy11896 265 ---K------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVP- 321 (1043)
Q Consensus 265 ---~------------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-~~~~t~~~~~~~~~~~~p- 321 (1043)
. .+.++|||||||.+|..++.+++..+|++++||||.+| +.+||++++..+...+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~ 173 (460)
T PTZ00327 94 QSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKH 173 (460)
T ss_pred cccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCc
Confidence 0 24799999999999999999999999999999999996 799999999999888886
Q ss_pred eEEEEeccCCCCCC-HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHH
Q psy11896 322 CIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 400 (1043)
Q Consensus 322 ~ivviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~ 400 (1043)
+++|+||||+...+ ..+.++++.+.
T Consensus 174 iIVvlNKiDlv~~~~~~~~~~ei~~~------------------------------------------------------ 199 (460)
T PTZ00327 174 IIILQNKIDLVKEAQAQDQYEEIRNF------------------------------------------------------ 199 (460)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHH------------------------------------------------------
Confidence 67899999987321 11111111110
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccc
Q psy11896 401 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 480 (1043)
Q Consensus 401 ~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~ 480 (1043)
+.+ ......|++.+||++|.|++.|+++|.+.+|.|...
T Consensus 200 ---------------------l~~----------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~---- 238 (460)
T PTZ00327 200 ---------------------VKG----------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRD---- 238 (460)
T ss_pred ---------------------HHh----------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC----
Confidence 000 012346899999999999999999999999987421
Q ss_pred cccCcccceeeeCCCCCCCCCcEEEEEeeeecC---------CccEEEEEEecCeecCCCEEEecCCC------------
Q psy11896 481 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK---------FGQLTYMRCYQGKLRKGEMIYNVRTD------------ 539 (1043)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---------~G~i~~~RV~sGtl~~gd~v~~~~~~------------ 539 (1043)
.+.|+.++|...+... .|.+..|+|.+|++++||.|.+.+.+
T Consensus 239 -----------------~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 301 (460)
T PTZ00327 239 -----------------LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCR 301 (460)
T ss_pred -----------------CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccc
Confidence 4678888888766432 28899999999999999999988643
Q ss_pred -cEEEeceEEEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 540 -KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 540 -~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
...+|.+|. ....++++|.||+.++|. ++ +...|+.|+
T Consensus 302 ~~~~~VksI~----~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~ 348 (460)
T PTZ00327 302 PIRTRIVSLF----AENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLG 348 (460)
T ss_pred cceEEEEEEE----ECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEE
Confidence 245788887 356789999999999884 44 456899998
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=293.44 Aligned_cols=251 Identities=24% Similarity=0.320 Sum_probs=199.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINII 272 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~li 272 (1043)
.+.++|+++||+|||||||+++|....... +..+|+|.......+.|. +..++||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~---------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfi 300 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ---------------------KEAGGITQKIGAYEVEFEYKDENQKIVFL 300 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc---------------------ccCCccccccceEEEEEEecCCceEEEEE
Confidence 456899999999999999999997432211 224677776655555553 5899999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||.+|...+.++++.+|++|+|+|+.+|+..||.+.+..+...++|+++|+||+|+...+.++..+++... +.
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l--- 376 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL--- 376 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc---
Confidence 99999999999999999999999999999999999999999999999999999999999865544333332110 00
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
+.+
T Consensus 377 ----------------------------------------------------------------l~e------------- 379 (742)
T CHL00189 377 ----------------------------------------------------------------IPE------------- 379 (742)
T ss_pred ----------------------------------------------------------------chH-------------
Confidence 000
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
..+..+|++++||++|.|++.|+++|..+.+.+. +.++ ++.|+.++|+++..|
T Consensus 380 --------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~-----------------lk~~--~~~~~~g~V~e~~iD 432 (742)
T CHL00189 380 --------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED-----------------LKAD--PTQLAQGIILEAHLD 432 (742)
T ss_pred --------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc-----------------ccCC--CCCCceEEEEEEEEc
Confidence 0123579999999999999999999987743211 0112 678999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-c-cccCcEEe
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D-CASGDTFV 581 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~Gdtl~ 581 (1043)
++ |.++++||++|+|+.||.|++.+ +.++++.+.+....++++|.||++|.|.|+ + ..+||+|.
T Consensus 433 ~~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~ 499 (742)
T CHL00189 433 KTKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQ 499 (742)
T ss_pred CCCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEE
Confidence 88 99999999999999999998875 356777777888889999999999999999 3 56899987
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=253.13 Aligned_cols=268 Identities=27% Similarity=0.375 Sum_probs=201.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
...-||+.+||+|+|||||+.+|......... ....-..-.|..|+|++|||||..+...++..+..+-.+||||
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~-----~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGG-----AEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhcc-----ccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 44679999999999999999999744321110 0000012356789999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.||.+.|+.+....|++|+||.|.+|..+||++++-++++.++|. ++|+||+|.... . +.++.+.
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd-~-ellelVe----------- 151 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD-E-ELLELVE----------- 151 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc-H-HHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999985 577899999841 1 1111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
.|++..
T Consensus 152 --------------------------------------------------------------------------mEvreL 157 (394)
T COG0050 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
|...-..+.-.||..|||+.-- .|.+|++++.+|+|.|... .+.||.+.|-
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~---------------------~dkPflmpvE 216 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD---------------------IDKPFLMPVE 216 (394)
T ss_pred HHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc---------------------ccccccccce
Confidence 1111223344577777776432 2689999999999999532 6899999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEE--EccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~Gdt 579 (1043)
.++...+ |.++++||-+|+|+.|+.+.+..-. ++..++.+- .-+..+++..|||-++ +.|. ++..|..
T Consensus 217 dvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 217 DVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred eeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceE
Confidence 9998876 9999999999999999999887543 222333322 1234568899999886 4565 6778999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 La 294 (394)
T COG0050 293 LA 294 (394)
T ss_pred ee
Confidence 98
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=257.91 Aligned_cols=265 Identities=29% Similarity=0.388 Sum_probs=203.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc--cccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV--GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~--~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.--||+-+||+|+|||||+.++....... ++..+ ..-.|.-|+|+.|||||....+.++.....+--+|||
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~-------g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCP 125 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEK-------GGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCP 125 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhc-------cccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCC
Confidence 34689999999999999999997432111 11111 1125777899999999999998888888899999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
||.||.+.|+.+....|++|+||.|.+|..+||++++-+|++-+++ +++|+||.|..... +.++-+.
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~--e~leLVE---------- 193 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP--EMLELVE---------- 193 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH--HHHHHHH----------
Confidence 9999999999999999999999999999999999999999999997 56789999987321 1111000
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
-|+++
T Consensus 194 ---------------------------------------------------------------------------mE~RE 198 (449)
T KOG0460|consen 194 ---------------------------------------------------------------------------MEIRE 198 (449)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHHHhhhcCccEEEEEeeccCC-------CC---HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEE
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKN-------KG---VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIA 504 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~-------~G---v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 504 (1043)
.|..--..+.-+||++|||+.- .| |..|||++.+|+|.|.. +.+.||++
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R---------------------~~~~pFl~ 257 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER---------------------DLDKPFLL 257 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc---------------------ccCCCcee
Confidence 1222223344579999998732 23 67899999999999953 26889999
Q ss_pred EEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEeccCCeeecCeecCCCEEE--EccC---cccc
Q psy11896 505 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCAS 576 (1043)
Q Consensus 505 ~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~ 576 (1043)
.|-.++..++ |+++.+|+-+|+|++|+++-+...++ +..|+.|.. -+..+++|.|||-++ +.|+ +++.
T Consensus 258 pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dvkR 333 (449)
T KOG0460|consen 258 PIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDVKR 333 (449)
T ss_pred ehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHH----HHHHHHhcccccceehhhhcCCHHHHhc
Confidence 9999999988 99999999999999999998876554 334555431 234689999999997 5677 7789
Q ss_pred CcEEe
Q psy11896 577 GDTFV 581 (1043)
Q Consensus 577 Gdtl~ 581 (1043)
|..++
T Consensus 334 Gmvl~ 338 (449)
T KOG0460|consen 334 GMVLA 338 (449)
T ss_pred ccEEe
Confidence 99888
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=285.74 Aligned_cols=246 Identities=24% Similarity=0.316 Sum_probs=199.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~d 279 (1043)
.|+++||+|+|||||+++|+.. .+|..++|++||+|++..+..+.. ++..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH
Confidence 4899999999999999999621 256777899999999988777755 467899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCC-HHHHHHHHHHHhCCCceeeeec
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
|...+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ .++..+++.+.+
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l---------- 133 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL---------- 133 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999998899985 6999999986311 111111111110
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
.+
T Consensus 134 -----------------------------------------------------------------~~------------- 135 (614)
T PRK10512 134 -----------------------------------------------------------------RE------------- 135 (614)
T ss_pred -----------------------------------------------------------------Hh-------------
Confidence 00
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
......|++.+||++|.|++.|++.|..+.+ |... .++|+.+.|..++..++ |.
T Consensus 136 ---~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~-~~~~---------------------~~~~~rl~Id~vf~v~G~Gt 190 (614)
T PRK10512 136 ---YGFAEAKLFVTAATEGRGIDALREHLLQLPE-REHA---------------------AQHRFRLAIDRAFTVKGAGL 190 (614)
T ss_pred ---cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc-cccC---------------------cCCCceEEEEEEeccCCCeE
Confidence 0011358899999999999999999987643 3211 46899999999998887 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--cc-C---ccccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG-V---DCASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~g-l---~~~~Gdtl~ 581 (1043)
++.|+|.+|+++.||+|.+.+.+...+|.+|. ....++++|.||+.+++ .| + ++..||+|+
T Consensus 191 VvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq----~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 191 VVTGTALSGEVKVGDTLWLTGVNKPMRVRGLH----AQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred EEEEEEecceEecCCEEEEcCCCCcEEEEEEe----cCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 99999999999999999999888888898887 34568999999999986 56 5 578999998
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=269.16 Aligned_cols=250 Identities=24% Similarity=0.300 Sum_probs=195.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
+-.||+++||.|||||||+++|.. .++|..++|++||+|+......+.|.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTG------------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhC------------------eecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 347899999999999999999941 25788899999999999876544432
Q ss_pred --------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEecc
Q psy11896 266 --------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKL 329 (1043)
Q Consensus 266 --------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKi 329 (1043)
.+.++|||||||.+|...+..++..+|++++|+|+.+|. ..++..++..+...++ |+++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 268999999999999999999999999999999999998 8999999988888877 588999999
Q ss_pred CCCCCCHH-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 330 DRLGADPY-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 330 D~~~~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
|+...+.. +..+++.+
T Consensus 150 Dl~~~~~~~~~~~~i~~--------------------------------------------------------------- 166 (411)
T PRK04000 150 DLVSKERALENYEQIKE--------------------------------------------------------------- 166 (411)
T ss_pred ccccchhHHHHHHHHHH---------------------------------------------------------------
Confidence 98642210 01111111
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
++.. ......|++.+||++|.|++.|++.|...+|.|...
T Consensus 167 ------------~l~~----------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~------------ 206 (411)
T PRK04000 167 ------------FVKG----------------TVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERD------------ 206 (411)
T ss_pred ------------Hhcc----------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC------------
Confidence 0000 001235889999999999999999999999877421
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecC--------C-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGK--------F-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRL 547 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~--------~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l 547 (1043)
.+.|+.+.|..++... + |.+..|||.+|++++||.|.+.+.+. ..+|.+|
T Consensus 207 ---------~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI 277 (411)
T PRK04000 207 ---------LDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSL 277 (411)
T ss_pred ---------CCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEE
Confidence 4678999998887432 2 67999999999999999999987542 4578888
Q ss_pred EEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 548 VRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 548 ~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
. ....++++|.|||.+++. ++ ++..|+.|+
T Consensus 278 ~----~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 278 R----AGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred E----ECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 6 335788999999998874 44 467899998
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=252.78 Aligned_cols=133 Identities=41% Similarity=0.516 Sum_probs=120.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE--ecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDtP 275 (1043)
++|||+++||+|||||||+++|+...+.+...+..... .+.+|..+.|.++|+|+......+. +.++.++|||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtP 78 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK---NAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTP 78 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH---HCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccc---cccccccchhhhcccccccccccccccccccceeecccc
Confidence 58999999999999999999999888877654333211 3468899999999999999999999 999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||.+|..++.++++.+|++|+|||+.+|+..++..++..+...++|+++|+||||+..
T Consensus 79 G~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 79 GHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE 136 (188)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH
T ss_pred cccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh
Confidence 9999999999999999999999999999999999999999999999999999999983
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=286.11 Aligned_cols=268 Identities=23% Similarity=0.269 Sum_probs=203.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceee------------eeecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEM------------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
.||+++||+|+|||||+++|++..+.+... |...+...+++++|..++|++||+|++.....+.+++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 469999999999999999999999887631 11112234567899999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHHHHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQK 346 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~~i~~~ 346 (1043)
+++|||||||.+|...+..++..+|++++|||+.+|+..||..++..+...++ |+++|+||+|+...+. +.++.+...
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~-~~~~~i~~~ 183 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ-EVFDEIVAD 183 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988886 5678999999874222 112221111
Q ss_pred hCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC
Q psy11896 347 VGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKS 426 (1043)
Q Consensus 347 l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~ 426 (1043)
+. .++.
T Consensus 184 i~-----------------------------------------------------------------------~~~~--- 189 (632)
T PRK05506 184 YR-----------------------------------------------------------------------AFAA--- 189 (632)
T ss_pred HH-----------------------------------------------------------------------HHHH---
Confidence 10 0000
Q ss_pred CCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCcccceeeeCC
Q psy11896 427 ISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP 494 (1043)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~ 494 (1043)
+ ... ...|++++||++|.|+. .|+++|... |.|...
T Consensus 190 -----------~-~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~~------------------ 237 (632)
T PRK05506 190 -----------K-LGL-HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASDR------------------ 237 (632)
T ss_pred -----------H-cCC-CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCCc------------------
Confidence 0 000 12467778999999986 477666543 433211
Q ss_pred CCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-
Q psy11896 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV- 572 (1043)
Q Consensus 495 ~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl- 572 (1043)
.++|+.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.+...+|.+|. ....++++|.|||.+++.--
T Consensus 238 ---~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aG~~v~i~l~~ 310 (632)
T PRK05506 238 ---NLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIV----TPDGDLDEAFAGQAVTLTLAD 310 (632)
T ss_pred ---CCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEE----ECCceeCEEcCCCeEEEEecC
Confidence 46788887776655332 2225699999999999999999888889999997 33456899999999987532
Q ss_pred --ccccCcEEe
Q psy11896 573 --DCASGDTFV 581 (1043)
Q Consensus 573 --~~~~Gdtl~ 581 (1043)
++..|++|+
T Consensus 311 ~~~i~rG~vL~ 321 (632)
T PRK05506 311 EIDISRGDMLA 321 (632)
T ss_pred ccccCCccEEe
Confidence 577899999
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=264.51 Aligned_cols=250 Identities=24% Similarity=0.318 Sum_probs=194.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
...||+++||+|+|||||+++|.. ..+|..++|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 64 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG------------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYT 64 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC------------------eecccCHhHHHcCceeEecccccccccccccCcccccc
Confidence 346899999999999999999941 24678889999999999876544321
Q ss_pred --------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEecc
Q psy11896 266 --------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKL 329 (1043)
Q Consensus 266 --------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKi 329 (1043)
+..+++||||||.+|...+..++..+|++++|+|+.+|. ..||.+++..+...++ |+++|+||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 65 TEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 468999999999999999999999999999999999998 8999999998888876 478999999
Q ss_pred CCCCCCHH-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 330 DRLGADPY-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 330 D~~~~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
|+...+.. +.++++.+
T Consensus 145 Dl~~~~~~~~~~~~i~~--------------------------------------------------------------- 161 (406)
T TIGR03680 145 DLVSKEKALENYEEIKE--------------------------------------------------------------- 161 (406)
T ss_pred ccCCHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 98742210 11111111
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
++. .. ...-+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 162 ------------~l~--------------~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~------------ 201 (406)
T TIGR03680 162 ------------FVK--------------GT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPERD------------ 201 (406)
T ss_pred ------------hhh--------------hc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCC------------
Confidence 000 00 01235889999999999999999999999877321
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecC--------C-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGK--------F-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRL 547 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~--------~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l 547 (1043)
.+.|+.++|..++... + |.+..|||.+|+|++||.|.+.+.+. ..+|.+|
T Consensus 202 ---------~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI 272 (406)
T TIGR03680 202 ---------LDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSL 272 (406)
T ss_pred ---------CCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEE
Confidence 4678999999877532 2 66899999999999999999986531 3477787
Q ss_pred EEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 548 VRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 548 ~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
. ....++++|.|||.+++. ++ ++..|+.|+
T Consensus 273 ~----~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~ 310 (406)
T TIGR03680 273 R----AGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVG 310 (406)
T ss_pred E----ECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEE
Confidence 7 345789999999999973 44 567899998
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-28 Score=260.65 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=151.1
Q ss_pred HHhcCCC--eeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEee-------ecccceeeeeeec
Q psy11896 621 RFTKEDP--TFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETL-------VQPFDFDYLHKKQ 691 (1043)
Q Consensus 621 ~l~~eDp--sl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti-------~~~~~~~~~~~~~ 691 (1043)
-|..+|| |++..+++++.++.++-...-|-.+.+...--.-++...+..-.|+-|.-. .+..+|+
T Consensus 553 Plk~sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~d------ 626 (842)
T KOG0469|consen 553 PLKKSDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWD------ 626 (842)
T ss_pred ceecCCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCc------
Confidence 4566777 444456778888888888888877665432111122222222222222111 1111221
Q ss_pred cCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cC
Q psy11896 692 SGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VD 769 (1043)
Q Consensus 692 ~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~ 769 (1043)
-.+++-+|-+.|- ..+++.++|.+.+.++-+++.+++..||+||.++|||+|+.|+++||.+.|.-.|. +|
T Consensus 627 ----vt~aRKIWCfgPd---~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIH 699 (842)
T KOG0469|consen 627 ----VTEARKIWCFGPD---GTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIH 699 (842)
T ss_pred ----hhhhheeeEeCCC---CCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhh
Confidence 1246667777663 35678889999999999999999999999999999999999999999999999997 67
Q ss_pred ChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 770 ~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
.+.+++++.+||++|.+++.|.|+|+||+|.+||+||+.++|.+++.|+++||++.+++.-
T Consensus 700 RGggQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~ 760 (842)
T KOG0469|consen 700 RGGGQIIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQV 760 (842)
T ss_pred cCCCeechHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceeccccc
Confidence 8889999999999999999999999999999999999999999999999999999987653
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=270.61 Aligned_cols=134 Identities=20% Similarity=0.335 Sum_probs=115.0
Q ss_pred EEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhHHHHHH
Q psy11896 702 IGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFILAA 779 (1043)
Q Consensus 702 ~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~~~~a~ 779 (1043)
.|.+.| ...+++.++|.+.+..+.++++++|++||+||+.+|||||+||+||+|+|.||++|. +++.+++|++|+
T Consensus 627 i~~f~~---~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~ 703 (836)
T PTZ00416 627 IWCFGP---ENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTA 703 (836)
T ss_pred eeeccC---CCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHH
Confidence 344544 234567777777665555566669999999999999999999999999999999998 788899999999
Q ss_pred HHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC--ceeeeh
Q psy11896 780 HGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYA 838 (1043)
Q Consensus 780 ~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~--~~~~~~ 838 (1043)
++||++|+++|.++||||+|.++|.+|++++|.|+++|++|||.+..++..++ +..|.|
T Consensus 704 ~~a~~~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a 764 (836)
T PTZ00416 704 RRVFYACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKA 764 (836)
T ss_pred HHHHHHHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999998876544 245544
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=272.07 Aligned_cols=250 Identities=24% Similarity=0.313 Sum_probs=200.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++||+|||||||+++|+.. .+|..+.|..+|+|++.....+.+++..+++||||||.+|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc------------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH
Confidence 6999999999999999999621 1456678899999999998889999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 359 (1043)
...+..++..+|++++|+|+.+|+.+||.+++..+...++| +++|+||+|+...+. ++.+.+.+
T Consensus 64 ~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~---~~~~~~ei------------ 128 (581)
T TIGR00475 64 ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE---IKRTEMFM------------ 128 (581)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH---HHHHHHHH------------
Confidence 99999999999999999999999999999999999889999 999999999874211 11111000
Q ss_pred cCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHh
Q psy11896 360 LGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439 (1043)
Q Consensus 360 ~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~ 439 (1043)
..++. .
T Consensus 129 -----------------------------------------------------------~~~l~--------------~- 134 (581)
T TIGR00475 129 -----------------------------------------------------------KQILN--------------S- 134 (581)
T ss_pred -----------------------------------------------------------HHHHH--------------H-
Confidence 00000 0
Q ss_pred hhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEE
Q psy11896 440 TLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLT 518 (1043)
Q Consensus 440 ~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~ 518 (1043)
.......|++.+||++|.|++.+.+.+...++..... . .++|+.+.|..++..++ |.++
T Consensus 135 ~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~------------------~--~~~p~r~~Id~~f~v~G~GtVv 194 (581)
T TIGR00475 135 YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK------------------R--IQKPLRMAIDRAFKVKGAGTVV 194 (581)
T ss_pred hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc------------------C--cCCCcEEEEEEEEecCCcEEEE
Confidence 0001125888999999999999999988776543211 0 46899999999998877 9999
Q ss_pred EEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 519 YMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 519 ~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
.|+|.+|+++.||+|.+.+.+...+|.+|. .+..++++|.||+.+++ .|+ ++..|..++
T Consensus 195 ~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq----~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~ 258 (581)
T TIGR00475 195 TGTAFSGEVKVGDNLRLLPINHEVRVKAIQ----AQNQDVEIAYAGQRIALNLMDVEPESLKRGLLIL 258 (581)
T ss_pred EEEEecceEecCCEEEECCCCceEEEeEEE----ECCccCCEEECCCEEEEEeCCCCHHHcCCceEEc
Confidence 999999999999999999988889999997 33567899999999985 566 467884444
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=251.77 Aligned_cols=279 Identities=24% Similarity=0.312 Sum_probs=212.2
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeee---------e-ecCCccccccccchhhhhhcCceEeeeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------E-VRGKDNVGAVMDSMELERQRGITIQSAATY 261 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~ 261 (1043)
.+..+....+.+++||+|+|||||+.+|++..+.+.... . ......+++++|...+|++||+|++.....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 344455678999999999999999999999988876421 1 122256889999999999999999999999
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLG 333 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 333 (1043)
++-+.+.++|+|+|||-||...++.+...+|.+++||||..| ...||+++...++..|+. .++++||||..+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 999999999999999999999999999999999999999854 468999999999999985 678899999998
Q ss_pred CCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 334 ADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++. +..++|...++... .+.+
T Consensus 330 Wsq-~RF~eIk~~l~~fL-------------------------------------------------------~~~~--- 350 (603)
T KOG0458|consen 330 WSQ-DRFEEIKNKLSSFL-------------------------------------------------------KESC--- 350 (603)
T ss_pred ccH-HHHHHHHHHHHHHH-------------------------------------------------------HHhc---
Confidence 764 33334443333110 0000
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCH---------------HHHHHHHHHhCCCCCCCCc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGV---------------QTLLDAVLDYLPNPGEVTN 478 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv---------------~~Lld~i~~~lPsp~~~~~ 478 (1043)
.+... .-.|+|+ |+++|+++ ..||+.|.. +-.|..
T Consensus 351 ------------gf~es-----------~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~--- 400 (603)
T KOG0458|consen 351 ------------GFKES-----------SVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER--- 400 (603)
T ss_pred ------------CcccC-----------CcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC---
Confidence 00000 0023443 44555444 245666655 333321
Q ss_pred cccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeee
Q psy11896 479 YAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMED 557 (1043)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~ 557 (1043)
..+.||++-|..++..+. |...+|||.||.+.+||+||+........|.+|. .+..+
T Consensus 401 ------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~----~~~~~ 458 (603)
T KOG0458|consen 401 ------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLT----SNDEP 458 (603)
T ss_pred ------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeee----cCCCc
Confidence 145699999999999877 8889999999999999999999888888888887 55677
Q ss_pred cCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 558 VEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 558 v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
...+.|||-|.+ .|+ .+..|++++
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeee
Confidence 888999999874 565 467898887
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=236.58 Aligned_cols=140 Identities=48% Similarity=0.637 Sum_probs=122.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------CeeE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----------DHNI 269 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i 269 (1043)
|||+++||+|+|||||+++|++.++.+.+.. .+. .+++|+.+.|++||+|++++..++.|. ++.+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i 75 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLI 75 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEE
Confidence 7999999999999999999999888776532 222 568999999999999999998888876 7889
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----CCCHHHHHHHHH
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----GADPYRVINQMR 344 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~~~~~~i~ 344 (1043)
+|||||||.+|..++..+++.+|++++|+|+.+|+..+|+.+++.+...++|+++|+||+|+. ..++++.++.+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 234444444433
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=242.42 Aligned_cols=245 Identities=29% Similarity=0.424 Sum_probs=206.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
.|+..||+++|||||+.++. ...+|..++|++||+|++....++..+++.+.|||.|||++|
T Consensus 2 ii~t~GhidHgkT~L~~alt------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhc------------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH
Confidence 47899999999999999995 235788999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 359 (1043)
...+..++...|.|++|||+.+|+..||.+++..+...+++. ++|+||+|+... ..+-+.+
T Consensus 64 i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i---------------- 125 (447)
T COG3276 64 ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKI---------------- 125 (447)
T ss_pred HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHH----------------
Confidence 999999999999999999999999999999999999999998 899999998732 1111111
Q ss_pred cCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHh
Q psy11896 360 LGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439 (1043)
Q Consensus 360 ~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~ 439 (1043)
.+++..+.
T Consensus 126 --------------------------------------------~~Il~~l~---------------------------- 133 (447)
T COG3276 126 --------------------------------------------KQILADLS---------------------------- 133 (447)
T ss_pred --------------------------------------------HHHHhhcc----------------------------
Confidence 11111110
Q ss_pred hhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEE
Q psy11896 440 TLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLT 518 (1043)
Q Consensus 440 ~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~ 518 (1043)
-.-.|+|..|+.+|.|+++|-+.|.+..- +.+ ++.+.||+.+|-..+..++ |++.
T Consensus 134 ---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e--------------------~d~~~~fri~IDraFtVKGvGTVV 189 (447)
T COG3276 134 ---LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE--------------------RDEQKPFRIAIDRAFTVKGVGTVV 189 (447)
T ss_pred ---cccccccccccccCCCHHHHHHHHHHhhh-hhh--------------------hccCCceEEEEeeEEEeccccEEE
Confidence 11236788899999999999998887664 211 1268999999999999998 9999
Q ss_pred EEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 519 YMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 519 ~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
.|-++||+++.||.++..+.++..+|.+|. ..-.++++|.||+-|++ .|. ++..|+.|+
T Consensus 190 tGtv~sG~V~v~D~L~l~p~~k~v~VRsIq----~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 190 TGTVLSGEVKVGDKLYLSPINKEVRVRSIQ----AHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred EeEEeeeeEEECCEEEEecCCCeEEEEeee----ecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 999999999999999999999999999998 55567899999999985 455 456899888
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=237.21 Aligned_cols=248 Identities=29% Similarity=0.361 Sum_probs=193.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG 276 (1043)
+-|+++||+|||||||++.+-..+ +..+ -..|||.+.....+.+. ...+.||||||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~--------Va~~-------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPG 64 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTN--------VAAG-------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPG 64 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCc--------cccc-------------cCCceeeEeeeEEEEeccCCCceEEEEcCCc
Confidence 569999999999999999995322 1112 25689999998888884 57999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.-|+....++...+|.+|+|||+.+|+.+||.+.+..++..++|+++++||||++.++++....++.+. +..
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------ 137 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------ 137 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC------
Confidence 9999999999999999999999999999999999999999999999999999999998887777666552 110
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
.|.
T Consensus 138 -------------------------------------------------------------~E~---------------- 140 (509)
T COG0532 138 -------------------------------------------------------------PEE---------------- 140 (509)
T ss_pred -------------------------------------------------------------Hhh----------------
Confidence 001
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
++.-+.++.+||++|+|+++||++|.-.-- . + .+..+ +++|..+.|.-...+++ |
T Consensus 141 -----~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae----v--~-----------elka~--~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 141 -----WGGDVIFVPVSAKTGEGIDELLELILLLAE----V--L-----------ELKAN--PEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -----cCCceEEEEeeccCCCCHHHHHHHHHHHHH----H--H-----------hhhcC--CCCcceEEEEEEEeccCCC
Confidence 122356777899999999999999864221 0 0 11222 78899999999888888 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
.++.+-|+.|||+.||.+...... .+|..++ -....+++.+.++--+-+.|+ +. ..||.+.
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v---~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~ 259 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY--GRVRTMV---DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFI 259 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC--CceEEee---hhcCCCccccCCCCCeEEeccccccccCceEE
Confidence 999999999999999999887532 2444444 344556777888877788888 33 4566665
|
|
| >cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=221.08 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=92.1
Q ss_pred hcccccCCCcccccceeeccCCCCcccchhhHHH--HHhhhhhhhhhcCccccccccceEEEEecCcccc--CCCChhHH
Q psy11896 841 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFI--LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISF 916 (1043)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~--~~~~~~~~ 916 (1043)
..++|+|||+..|||++++++.+..++...+... .|+.|||||+.+||||+|||+||+|+|.++.+|+ .+++++||
T Consensus 73 ~~~iw~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi 152 (178)
T cd01683 73 ARSIWAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQI 152 (178)
T ss_pred hcCeEEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHH
Confidence 4679999999999999999988766655444442 6899999999999999999999999999999998 78889999
Q ss_pred HHHHHHHHHHHHHhcCceeecceEEE
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMSV 942 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~~ 942 (1043)
++|+|+||++||++|+||||||||.|
T Consensus 153 ~~aar~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 153 IPTARRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHHHHHCCCEEEcceEeC
Confidence 99999999999999999999999975
|
The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=226.18 Aligned_cols=309 Identities=21% Similarity=0.236 Sum_probs=206.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCcee-----e-------eeecCCccccccccchhhhhhcCceEeeeeEEEEec
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISE-----M-------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~-----~-------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 265 (1043)
...++..+|++|.|||||+.+|++.++.+.. . +.-.+.-.++-+.|-++.|++.||||+.++..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4567999999999999999999988766543 1 111122346668899999999999999999999999
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMR 344 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~ 344 (1043)
..++.+.|||||+.|...|..+.+-||.+|++|||..|+..||+++.-.+...+++ +++.+||||+.+.+. +..++|.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 567799999996553 3333333
Q ss_pred HHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc
Q psy11896 345 QKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 345 ~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
..+... .+.|
T Consensus 164 ~dy~~f--------------------------------------------------------a~~L-------------- 173 (431)
T COG2895 164 ADYLAF--------------------------------------------------------AAQL-------------- 173 (431)
T ss_pred HHHHHH--------------------------------------------------------HHHc--------------
Confidence 322100 0000
Q ss_pred CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccC-cccceeeeCCCCCCCCCcE
Q psy11896 425 KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENG-QEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 425 ~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~ 503 (1043)
.+..-.++|+ ||+.|.+|-. + ....++|..+.- +--+.+.+..+ ...+||+
T Consensus 174 --------------~~~~~~~IPi---SAl~GDNV~~---------~-s~~mpWY~GptLLe~LE~v~i~~~-~~~~~~R 225 (431)
T COG2895 174 --------------GLKDVRFIPI---SALLGDNVVS---------K-SENMPWYKGPTLLEILETVEIADD-RSAKAFR 225 (431)
T ss_pred --------------CCCcceEEec---hhccCCcccc---------c-ccCCCcccCccHHHHHhhcccccc-cccccee
Confidence 0001122333 5555544410 0 011122211110 00000011111 1334555
Q ss_pred EEEEeeeec-CCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEcc---CccccCcE
Q psy11896 504 ALAFKLEAG-KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFG---VDCASGDT 579 (1043)
Q Consensus 504 ~~V~K~~~d-~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~g---l~~~~Gdt 579 (1043)
..|-.+..- ..=+---|+|-||++++||+|.+.++|+..+|++|..+.| ++++|.||+-+.+.= +|...||.
T Consensus 226 fPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~ 301 (431)
T COG2895 226 FPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDL 301 (431)
T ss_pred eceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcE
Confidence 444333211 1012224678899999999999999999999999998866 467899999998753 37789999
Q ss_pred EecCCCCcccccCCCCCCceEEEEEEeCCCcc
Q psy11896 580 FVTDKNNSISLESIYVADPVVSMSIKAVNNKD 611 (1043)
Q Consensus 580 l~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d 611 (1043)
|+ ..+.++ ...-.+..-++.+.=+|..+..
T Consensus 302 i~-~~~~~~-~~~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 302 IV-AADAPP-AVADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred EE-ccCCCc-chhhhcceeEEEecCCCCCCCc
Confidence 99 343332 2333455667777777766544
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=232.93 Aligned_cols=207 Identities=47% Similarity=0.596 Sum_probs=158.3
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
.+++|++..|+++|+|+......+.|.++++++||||||.+|.-++.++++..|++|+|+|+..|++.|+..+|+++.++
T Consensus 76 ~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry 155 (721)
T KOG0465|consen 76 GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY 155 (721)
T ss_pred ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc--------ceeeeeeeecccCCc------------
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE--------YIRNIGISAHIDSGK------------ 161 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------~~~ii~iSa~~g~Gi------------ 161 (1043)
++|.|.++||+|+..+++-+.++++...+...--..+++-...-. ....+......|.-+
T Consensus 156 ~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~ 235 (721)
T KOG0465|consen 156 NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEEL 235 (721)
T ss_pred CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHH
Confidence 999999999999999999999999988764322111111110000 011222233333222
Q ss_pred -----chHHHHHHhhccccccccccccccccccccCCCCcccee---eEEEEEe--ecCCcccHHhHHhcccCCcee
Q psy11896 162 -----TTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIR---NIGISAH--IDSGKTTLTERILFYTGRISE 228 (1043)
Q Consensus 162 -----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir---~i~ivG~--~~~GKTTL~~~Ll~~~~~~~~ 228 (1043)
++|.+.++++...+.+++...+.++..+.....+...+. .=+++|. -|-|-..|+++.+.+.+....
T Consensus 236 ~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 236 AEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence 567777888777777887777777776665444443332 2235665 488999999999988766544
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=220.74 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=214.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
-.+|+..||+|+|||||+..|. .|..++|+. ...++|..++|.++|.|-+.+..-+-++
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred eEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 4679999999999999999996 334455543 2357899999999999888777655543
Q ss_pred -----------CeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 266 -----------DHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 -----------~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
++.+.|+||-||+.|...+.+++ ...|..+++|.|.+|++..|++++..+....+|++++++|+|..
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 35789999999999999999999 78999999999999999999999999999999999999999997
Q ss_pred CC-CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHh
Q psy11896 333 GA-DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411 (1043)
Q Consensus 333 ~~-~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~ 411 (1043)
.. .+..+.+++...|+. ..-+.+++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~-v~Rip~~vk---------------------------------------------------- 295 (527)
T COG5258 269 PDDRFQGVVEEISALLKR-VGRIPLIVK---------------------------------------------------- 295 (527)
T ss_pred cHHHHHHHHHHHHHHHHH-hcccceeee----------------------------------------------------
Confidence 43 345566666655542 111111110
Q ss_pred cCChHHHHHHhccCCCCHHHHHHHHHHhhhcCc-cEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK-FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 412 e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
+.|+.. . + ..+...++ ++|+|.+|+.+|.|++ +|+-+...||.-..
T Consensus 296 ~~~d~v---------------~-a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~--------------- 342 (527)
T COG5258 296 DTDDVV---------------L-A-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR--------------- 342 (527)
T ss_pred ccchhH---------------H-h-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc---------------
Confidence 111110 0 0 11223444 8999999999999995 55566677775421
Q ss_pred eeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCC
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGD 565 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGd 565 (1043)
. +..+||.+||.|++...+ |.++.+-|.||.++.||+|+..+.. ++.+|++|. .++..|++|.||+
T Consensus 343 ---~--~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe----mh~~rvdsa~aG~ 413 (527)
T COG5258 343 ---W--DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE----MHHYRVDSAKAGS 413 (527)
T ss_pred ---c--CCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE----EeeEEeccccCCc
Confidence 0 167999999999999988 9999999999999999999987642 456788876 5677899999999
Q ss_pred EEE--EccC---ccccCcEEe
Q psy11896 566 IFA--LFGV---DCASGDTFV 581 (1043)
Q Consensus 566 Iv~--i~gl---~~~~Gdtl~ 581 (1043)
|++ +.|. .+..|..|+
T Consensus 414 iig~Al~gv~~e~lerGMVl~ 434 (527)
T COG5258 414 IIGIALKGVEKEELERGMVLS 434 (527)
T ss_pred EEEEEecccCHHHHhcceEec
Confidence 986 5677 467898887
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=221.60 Aligned_cols=128 Identities=32% Similarity=0.407 Sum_probs=112.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.||+++||+|+|||||+++|++..... +..... ....+|+.+.|++||+|++.....+.+++.+++|+|||||.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~---g~~~~~--~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKK---GGAKFK--KYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc---cccccc--ccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH
Confidence 589999999999999999999764321 111101 124689999999999999999999999999999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 332 (1043)
|..++.++++.+|++++|+|+.+|+..+++.++..+.+.++| +++|+||||+.
T Consensus 78 ~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 67899999986
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=249.60 Aligned_cols=301 Identities=24% Similarity=0.281 Sum_probs=185.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
..|+++||+|||||||+++|..........+.+..... +.+.+....+...|.+.......+.+. .++|||||||.+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e~ 83 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHEA 83 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccccccccccceeccccccccccC--CEEEEECCChHH
Confidence 56999999999999999999744322222111110000 001111101111121111100111111 379999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHHhCCCceeeeecc
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.. .....- ..+.+.+..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~--------- 153 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK--------- 153 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh---------
Confidence 999999999999999999999999999999999999889999999999999852 110000 000000000
Q ss_pred ccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHH
Q psy11896 359 GLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438 (1043)
Q Consensus 359 ~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~ 438 (1043)
-+....+...+...++. .+|.+..+..+.+.. ++
T Consensus 154 --------------------------------~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~~-~~- 187 (586)
T PRK04004 154 --------------------------------QSQRVQQELEEKLYELI------------GQLSELGFSADRFDR-VK- 187 (586)
T ss_pred --------------------------------hhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhhh-hh-
Confidence 00000011111111111 133333444333322 11
Q ss_pred hhhcCccEEEEEeeccCCCCHHHHHHHHHH----hCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLD----YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~----~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
..+..+|++.+||++|.|+++|++.+.. ++|.+..+ +++.|+.+.|++++.+++
T Consensus 188 --~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~--------------------~~~~~~~~~V~ev~~~~g 245 (586)
T PRK04004 188 --DFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKI--------------------DVEGPGKGTVLEVKEERG 245 (586)
T ss_pred --ccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhcc--------------------CCCCCeEEEEEEEEEeCC
Confidence 1245678999999999999999988864 34444322 167899999999999988
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEec--------cCCeeecCeecCCCEEEEc--cC-ccccCcEE
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLH--------SNEMEDVEEVLAGDIFALF--GV-DCASGDTF 580 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~~~Gdtl 580 (1043)
|.+++++|++|+|++||.|...+.+. ..+|..|.... +.....++++.|..-+-+. |+ +...|+.+
T Consensus 246 ~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 246 LGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred CceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 99999999999999999998877653 35888887652 1234556666666555443 66 44556655
Q ss_pred e
Q psy11896 581 V 581 (1043)
Q Consensus 581 ~ 581 (1043)
.
T Consensus 326 ~ 326 (586)
T PRK04004 326 R 326 (586)
T ss_pred E
Confidence 4
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=231.04 Aligned_cols=250 Identities=26% Similarity=0.326 Sum_probs=196.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG 276 (1043)
+.+.|.|+||+|||||||+++|-...-.- .-..|||.+.....+.. +|..++|+||||
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA---------------------~E~GGITQhIGAF~V~~p~G~~iTFLDTPG 210 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA---------------------GEAGGITQHIGAFTVTLPSGKSITFLDTPG 210 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh---------------------hhcCCccceeceEEEecCCCCEEEEecCCc
Confidence 45679999999999999999995332111 12457888776665443 679999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.-|.....++...+|.+++||.|.+|+.+||.+.+..++..++|+++++||+|+++++++..++++.. .+. .
T Consensus 211 HaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~-~gi--~---- 283 (683)
T KOG1145|consen 211 HAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLS-QGI--V---- 283 (683)
T ss_pred HHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHH-cCc--c----
Confidence 999999999999999999999999999999999999999999999999999999999999888777644 000 0
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+|.
T Consensus 284 -------------------------------------------------------------~E~---------------- 286 (683)
T KOG1145|consen 284 -------------------------------------------------------------VED---------------- 286 (683)
T ss_pred -------------------------------------------------------------HHH----------------
Confidence 000
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
.+--++++..||++|.|++.|.+++.-..--- .+..+ |++|+-++|.....|++ |
T Consensus 287 -----~GGdVQvipiSAl~g~nl~~L~eaill~Ae~m-----------------dLkA~--p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 287 -----LGGDVQVIPISALTGENLDLLEEAILLLAEVM-----------------DLKAD--PKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred -----cCCceeEEEeecccCCChHHHHHHHHHHHHHh-----------------hcccC--CCCCceEEEEEeeecCCcc
Confidence 12235788889999999999998886432100 11222 88999999999999988 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
.++.+-|-.|||++|+.|.... .-.||..|+-..| .++++|.+|.-+.|.|. |+ ..||-+.
T Consensus 343 ~~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 343 PVATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred ceeEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEE
Confidence 9999999999999999987653 2346666664444 56899999999999998 65 4577654
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=228.38 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=112.8
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccCCcch----HHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChh
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNVPKPF----LPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNE 772 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~----~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~ 772 (1043)
++..|.+.| +..+++.+.|++....+++++ .++|.+||+|+..+||||++|+++|+|+|.|+.... .+.++
T Consensus 728 aRsiWaFgp---d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgg 804 (971)
T KOG0468|consen 728 ARSIWAFGP---DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGG 804 (971)
T ss_pred hcceeccCC---CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCC
Confidence 556677755 335678999988877777654 556899999999999999999999999999987754 67888
Q ss_pred hHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 773 ISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 773 ~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+++++++||++|.|++.|.|+||||+|.+||+.|.+++..|+..|++|||++......
T Consensus 805 gQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~ 862 (971)
T KOG0468|consen 805 GQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPV 862 (971)
T ss_pred CccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCC
Confidence 9999999999999999999999999999999999999999999999999999876544
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-22 Score=205.75 Aligned_cols=306 Identities=25% Similarity=0.306 Sum_probs=211.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 265 (1043)
+.--||+++||++||||||+.+|. ..++|.+.+|-+||+|++..+......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als------------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y 69 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS------------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECY 69 (415)
T ss_pred CcceEeeeeeecccchhhheehhh------------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCccc
Confidence 345789999999999999999995 246788889999999999877643210
Q ss_pred ---------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCCC-eEEEEec
Q psy11896 266 ---------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVP-CIAFINK 328 (1043)
Q Consensus 266 ---------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~p-~ivviNK 328 (1043)
-+++.|+|+|||.-+...|.++....|+|++||+|.+ ..++||++++-.+.-.++. ++++=||
T Consensus 70 ~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNK 149 (415)
T COG5257 70 TTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNK 149 (415)
T ss_pred ccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecc
Confidence 1478999999999999999999999999999999995 6899999999988888885 5677799
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 329 LDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
+|+.. .++++++.++.. +
T Consensus 150 IDlV~--~E~AlE~y~qIk------------------------------------------------------------~ 167 (415)
T COG5257 150 IDLVS--RERALENYEQIK------------------------------------------------------------E 167 (415)
T ss_pred cceec--HHHHHHHHHHHH------------------------------------------------------------H
Confidence 99983 333333322211 1
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
|+++ +.. .-.|++.+||..+.+++.|+++|.+++|.|..
T Consensus 168 ------------FvkG---------------t~A-e~aPIIPiSA~~~~NIDal~e~i~~~IptP~r------------- 206 (415)
T COG5257 168 ------------FVKG---------------TVA-ENAPIIPISAQHKANIDALIEAIEKYIPTPER------------- 206 (415)
T ss_pred ------------Hhcc---------------ccc-CCCceeeehhhhccCHHHHHHHHHHhCCCCcc-------------
Confidence 1111 000 11377888999999999999999999999953
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecCC---------ccEEEEEEecCeecCCCEEEecCC-----CcEE----EeceEEEe
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGKF---------GQLTYMRCYQGKLRKGEMIYNVRT-----DKKV----RVSRLVRL 550 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~~---------G~i~~~RV~sGtl~~gd~v~~~~~-----~~~~----ki~~l~~~ 550 (1043)
+.+.|.+++|.+.|.... |=+.-+-+.+|.|+.||++-+.+. +.+. -.+.+..+
T Consensus 207 --------d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl 278 (415)
T COG5257 207 --------DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSL 278 (415)
T ss_pred --------CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEE
Confidence 267888999988876421 446778899999999999986541 1111 12233333
Q ss_pred ccCCeeecCeecCCCEEEEc-cCc--cccCcEEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCC
Q psy11896 551 HSNEMEDVEEVLAGDIFALF-GVD--CASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627 (1043)
Q Consensus 551 ~g~~~~~v~~a~aGdIv~i~-gl~--~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDp 627 (1043)
++ ....+++|.+|-.+++. +|| +..+|-|... +.=.+-..|+...++.+|-. -|.++.-.+-
T Consensus 279 ~a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~----V~G~pG~lPpv~~~~~ie~~----------LL~RvvG~~~ 343 (415)
T COG5257 279 QA-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQ----VVGKPGTLPPVWTSIRIEYH----------LLERVVGTKE 343 (415)
T ss_pred Ee-CCeeeeeccCCceEEEecccCcchhhhhhhccc----cccCCCCCCCceEEEEEEee----------ehhhhhCccc
Confidence 33 34578999999999874 453 3456655421 11112234444556666642 2344444444
Q ss_pred eeEEEEcCCCCcEEEEechh
Q psy11896 628 TFHFFYDPESKETLVSGMGE 647 (1043)
Q Consensus 628 sl~~~~~~etge~il~g~Ge 647 (1043)
..+++- -.++|.++...|-
T Consensus 344 e~kvep-ik~~E~Lml~VGt 362 (415)
T COG5257 344 ELKVEP-IKTNEVLMLNVGT 362 (415)
T ss_pred cccccc-ccCCCeEEEEeec
Confidence 555542 3567777665553
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=230.11 Aligned_cols=284 Identities=25% Similarity=0.344 Sum_probs=179.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---------------- 263 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 263 (1043)
..|+++||+|||||||+++|+...-..... +|+|.+.....+.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~---------------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~ 63 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA---------------------GGITQHIGATEIPMDVIEGICGDLLKKFK 63 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccC---------------------CceecccCeeEeeeccccccccccccccc
Confidence 469999999999999999998543222111 1222221111111
Q ss_pred --ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHH
Q psy11896 264 --WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVIN 341 (1043)
Q Consensus 264 --~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~ 341 (1043)
.+...+.|||||||.+|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.....
T Consensus 64 v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~----- 138 (590)
T TIGR00491 64 IRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWR----- 138 (590)
T ss_pred cccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhh-----
Confidence 1113489999999999999999999999999999999999999999999999889999999999999863100
Q ss_pred HHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy11896 342 QMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 421 (1043)
Q Consensus 342 ~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~ 421 (1043)
...+. |+ ++. ...-+........+....++..+++.
T Consensus 139 ---~~~~~-------~f-------------------~e~-------sak~~~~v~~~~~~~~~~lv~~l~~~-------- 174 (590)
T TIGR00491 139 ---SHEGR-------PF-------------------MES-------FSKQEIQVQQNLDTKVYNLVIKLHEE-------- 174 (590)
T ss_pred ---hccCc-------hH-------------------HHH-------HHhhhHHHHHHHHHHHHHHHHHHHhc--------
Confidence 00000 00 000 00000000111111222222222221
Q ss_pred hccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHh----CCCCCCCCccccccCcccceeeeCCCCC
Q psy11896 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY----LPNPGEVTNYAIENGQEDKKVVLNPSRD 497 (1043)
Q Consensus 422 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~----lPsp~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1043)
.+..+.+.. + --.+..+|++.+||++|.|+++|+++|... ++..... +
T Consensus 175 ----G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~--------------------~ 226 (590)
T TIGR00491 175 ----GFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKL--------------------E 226 (590)
T ss_pred ----CccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhcc--------------------C
Confidence 222211111 1 123456799999999999999999988643 2222111 1
Q ss_pred CCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEecc--------CCeeecCeecC--C
Q psy11896 498 GKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLHS--------NEMEDVEEVLA--G 564 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~g--------~~~~~v~~a~a--G 564 (1043)
+++|+.+.|...+.+++ |.++.++|++|+|++||.|...+.+. ..+|..|....+ .....++++.| |
T Consensus 227 ~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~ 306 (590)
T TIGR00491 227 EEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAG 306 (590)
T ss_pred CCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCc
Confidence 67899999999999888 99999999999999999999887653 457777775542 12334555443 3
Q ss_pred CEEEEccC-ccccCcEEe
Q psy11896 565 DIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 565 dIv~i~gl-~~~~Gdtl~ 581 (1043)
--+.+.|| +...|+.+.
T Consensus 307 ~~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 307 VKIAAPGLDDVMAGSPIR 324 (590)
T ss_pred eeEEecCCCCCCCCCEEE
Confidence 33445566 344565553
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=235.23 Aligned_cols=111 Identities=60% Similarity=0.905 Sum_probs=105.8
Q ss_pred cccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHh
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 100 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~ 100 (1043)
++++|++++|+++|+|+......+.|.+ +.++|||||||.||..++.++++.+|++|+|+|+..|+..|++.+|+++.+
T Consensus 47 ~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~ 126 (697)
T COG0480 47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK 126 (697)
T ss_pred CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh
Confidence 6689999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 101 YDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 101 ~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
.++|.++++||||+...+.....+++...++.
T Consensus 127 ~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 127 YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999999999999988888888888887765
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=216.92 Aligned_cols=134 Identities=26% Similarity=0.355 Sum_probs=116.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeee--eec-----CCc---cccccccchhhhhhcCceEeeeeEEEEecCeeEE
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVR-----GKD---NVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~v~-----~~~---~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 270 (1043)
||+++||+|||||||+++|++..+.+.+.+ .+. .|. ++++++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 699999999999999999999999887644 221 222 2345899999999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-------CcchHHHHHHHHHHhcC-CCeEEEEeccCCCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGA 334 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-------g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~~~ 334 (1043)
+||||||.+|...+..+++.+|++++|||+.+ +...++..++..+...+ .|+++|+||||+..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999998 56778999988887777 467889999999743
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=207.04 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=88.9
Q ss_pred hcccccCCCcccccceeeccCCCCcccchhhHH--HHHhhhhhhhhhcCccccccccceEEEEecCccccC--CCChhHH
Q psy11896 841 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF--ILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV--DSNEISF 916 (1043)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~--~~~~~~~ 916 (1043)
.+++|+|||+..|||++++++.....++..... ..++.||++|+.+||||+|||+||+|+|.++.+|+. +++++++
T Consensus 73 ~~~Iw~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~ 152 (177)
T cd01681 73 ARKIWAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQI 152 (177)
T ss_pred hCcEEEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhH
Confidence 578999999999999999987765444333333 268999999999999999999999999999999975 7788999
Q ss_pred HHHHHHHHHHHHHhcCceeecceEE
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMS 941 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~ 941 (1043)
++|+|+||++||++|+||||||||.
T Consensus 153 ~~a~r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 153 IPAARRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHHHHHhhCCCEEEccccC
Confidence 9999999999999999999999994
|
U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=199.65 Aligned_cols=130 Identities=45% Similarity=0.649 Sum_probs=110.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-----cCeeEEEEcC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-----KDHNINIIDT 274 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDt 274 (1043)
|||+++|++|+|||||+++|+...+.+.+.+ ....+.+..+.++.+|+|.......+.| ++..++||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt 74 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDT 74 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEEC
Confidence 7999999999999999999998766554311 1134678888999999999888777755 4577999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
|||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+....
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999999988888888887777899999999999986533
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=178.05 Aligned_cols=78 Identities=28% Similarity=0.424 Sum_probs=75.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCc--EEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW--VTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||+|++++..++. +.|+|++|++|+|||+++||+.|+|+|+|+|+|+||+++|
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999999987654 9999999999999999999999999999999999999986
|
This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-22 Score=207.75 Aligned_cols=134 Identities=28% Similarity=0.378 Sum_probs=116.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCcee--eeeec--------CCccccccccchhhhhhcCceEeeeeEEEEecCeeEE
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR--------GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 270 (1043)
||+++||+|+|||||+++|++..+.+.. .+.+. +.....+++|+.+.|++||+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999999888762 22211 1112356899999999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
|||||||.+|..++..+++.+|++++|+|+.+|...++..++..+...+.| +++|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999999988888888866 5678999998743
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=189.23 Aligned_cols=119 Identities=37% Similarity=0.576 Sum_probs=111.5
Q ss_pred CeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCc
Q psy11896 670 PKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCL 748 (1043)
Q Consensus 670 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l 748 (1043)
|+|+|||||+++++ ....++++.|+.++|+++.+.++|.+ ++++.|++++.+..+|++|+++|++||++++.+|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 88999999999999999999999976 678999999999999999999999999999999999
Q ss_pred cccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcc
Q psy11896 749 SGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV 791 (1043)
Q Consensus 749 ~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~ 791 (1043)
+||||+|++|+|.++.+|.+++++.+|++|+++|+++|+++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999874
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E .... |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=225.60 Aligned_cols=127 Identities=57% Similarity=0.858 Sum_probs=112.9
Q ss_pred cceeeeeecccccccC---C---------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 4 KVKIIHIKQEQVRGKD---N---------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~---~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
.+.|+ |-...||+|. + .++++|+.++|+++|+|++.....+.|++++++|+|||||.+|..
T Consensus 12 ni~ii-G~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 12 NIGIM-AHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 34455 7778888765 1 246889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++..+++.+|++|+|+|+..++..++..++.++...++|+|+++||+|+.+.+....++++++.++
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~ 156 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLG 156 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999988777777788877664
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-23 Score=236.59 Aligned_cols=670 Identities=19% Similarity=0.139 Sum_probs=357.0
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
-+.+|+.++|..+|+|..........+++.++|||+|||.||.+++.++.+-+|++++++|+.+|+..|+..+++++...
T Consensus 44 irfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~ 123 (887)
T KOG0467|consen 44 IRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE 123 (887)
T ss_pred eeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc
Confidence 45679999999999999998887777899999999999999999999999999999999999999999999999988878
Q ss_pred CCCEEEEEecCCCC----CCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcccccc
Q psy11896 102 DVPCIAFINKLDRL----GADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE 177 (1043)
Q Consensus 102 ~~piilvlNKiDl~----~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~ 177 (1043)
+...++|+||||+. +..+.+.+..+...+. +. ..+ ||+..+. +-+
T Consensus 124 ~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~----~v----------n~~--i~~~~~~-~v~-------------- 172 (887)
T KOG0467|consen 124 GLKPILVINKIDRLITELKLSPQEAYEHLLRVIE----QV----------NGV--IGQFLGG-IVE-------------- 172 (887)
T ss_pred cCceEEEEehhhhHHHHHhcChHHHHHHHHHHHH----Hh----------hhH--HHHhhcc-hhh--------------
Confidence 88899999999953 2334444333322110 00 000 1111111 111
Q ss_pred ccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCcee--eeeecCCccccccccchhhhhhcCceE
Q psy11896 178 MHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE--MHEVRGKDNVGAVMDSMELERQRGITI 255 (1043)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~~~~~~~~~~d~~~~e~~~giTi 255 (1043)
+..+.+.|+ ..--|.|.+|++++.+.......+.. .+++ ...+....+..++.+.
T Consensus 173 --------------l~~~~~~i~--d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~-------~~~kl~~k~~al~k~l 229 (887)
T KOG0467|consen 173 --------------LDDNWENIE--DEEITFGPEDGNVIFASALDGWGFGIEQFAKF-------YAKKLGLKDAALLKFL 229 (887)
T ss_pred --------------ccchhhhhh--hcceeecCCCCcEEEEEecccccccHHHHHHH-------HHHhcChhhhhhhhhh
Confidence 111112233 34457777888777666533332221 0000 0011112333444444
Q ss_pred eeeeEEEEe------cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 256 QSAATYTLW------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 256 ~~~~~~~~~------~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
...+....+ ++..-...|.++|.+|.+.+.-+-+.+|.. -+.+..+++.+++..+...-.+ .++.|+|
T Consensus 230 wgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~-----~ll~~im 303 (887)
T KOG0467|consen 230 WGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR-----NLLDAIM 303 (887)
T ss_pred ccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccc-hHHHHHHHhhhcccccchHHHH-----HHHHHHH
Confidence 433332211 111112288999999999988887777776 3344445556666555433222 2333444
Q ss_pred CCC----CCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHH
Q psy11896 330 DRL----GADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQE 405 (1043)
Q Consensus 330 D~~----~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~ 405 (1043)
++- .+.+-.++.++ |......+...+.-
T Consensus 304 ~~wLPls~avll~a~~~l------------------------------------------------p~pl~~~~~r~~rl 335 (887)
T KOG0467|consen 304 STWLPLSDAVLLTVVYKL------------------------------------------------PDPIRSQAERGLRL 335 (887)
T ss_pred HhhcccccchHHHHHHhc------------------------------------------------CCHHHHHHHhhcee
Confidence 432 11111111110 11110000000000
Q ss_pred -----------HHHHHhcC-ChHHHHHHhccC-CCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCC-
Q psy11896 406 -----------LIEHVAEG-DEILGEMFLEEK-SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP- 471 (1043)
Q Consensus 406 -----------l~e~l~e~-dd~l~~~~l~~~-~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lP- 471 (1043)
+.+.+-+. ++..+-.|...+ ..+...+... ....|.++|.|.-..|.-+ .-+-|
T Consensus 336 ~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~-----~l~~~ari~sgTlr~g~~v-------~v~~pd 403 (887)
T KOG0467|consen 336 LSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQS-----RLLAFARIFSGTLRVGQVV-------YVLGPD 403 (887)
T ss_pred ccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchh-----hheeeeeeccCceeeccEe-------eecCCC
Confidence 00000000 111000011110 0011111110 0113445555544443211 11112
Q ss_pred -CCCC-CCcccccc---CcccceeeeCCCCCCCCCcEEEEE-----ee--ee--cCCccEEEEEEecCeecCCCEEEecC
Q psy11896 472 -NPGE-VTNYAIEN---GQEDKKVVLNPSRDGKHPFIALAF-----KL--EA--GKFGQLTYMRCYQGKLRKGEMIYNVR 537 (1043)
Q Consensus 472 -sp~~-~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~V~-----K~--~~--d~~G~i~~~RV~sGtl~~gd~v~~~~ 537 (1043)
.+.+ ...-++.. -.+.+-+ ..+..+.+.+++..- |. .. .+.|++++ +.|+||...+-.|...+
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv--~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~-~~f~~tp~vrvaiep~~ 480 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELV--PLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLV-VNFQITPIVRVAIEPDD 480 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccce--eeeccCCCcEEEecccceEeccceecccCCCcceee-eeeeeeeEEEEEeecCC
Confidence 1111 00001110 0001111 111124455554431 11 11 14488888 89999998888887654
Q ss_pred CCc-EEEeceEEEecc-CCeeecCeecCCCEEE-EccC-ccc------cC---cEEecCCCCcccc-cCCCCCCce--EE
Q psy11896 538 TDK-KVRVSRLVRLHS-NEMEDVEEVLAGDIFA-LFGV-DCA------SG---DTFVTDKNNSISL-ESIYVADPV--VS 601 (1043)
Q Consensus 538 ~~~-~~ki~~l~~~~g-~~~~~v~~a~aGdIv~-i~gl-~~~------~G---dtl~~~~~~~~~~-~~~~~~~pv--~~ 601 (1043)
... ..-++++-.+.. +....+-.-.-|.-+. .+|. .+. +| --+. ......++ +.+ ...|. ..
T Consensus 481 p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~efa~i~i~-vSeP~vpfrET~-~e~s~l~~~ 558 (887)
T KOG0467|consen 481 PDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKEFAKIEIS-VSEPLVPFRETI-IEDSDLLAN 558 (887)
T ss_pred hHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhhhhceEEE-ecCCccchhhhc-cccchhhhh
Confidence 221 000111110100 0000010111222222 1221 110 11 0111 00101111 111 11112 34
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecCCeeeEEEeeec
Q psy11896 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQ 680 (1043)
Q Consensus 602 ~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~p~V~yrEti~~ 680 (1043)
.+|++. +..++..++....+-+|.-...++ -++++.....+++|-+- |+...+ .....++ +.+..+||+..
T Consensus 559 ~~I~~~---~~~~~~~~~ki~~~~~pl~~~~v~-~l~~~~~ti~~i~~~~~---~~~~i~e~~k~~~~-e~ls~~~s~~~ 630 (887)
T KOG0467|consen 559 LSIGQE---TKCLPRGQLKIKLRVVPLSGAVVD-LLDKNSSLISNILRGES---RQVPIDESQKGSFE-ENLSLLISLER 630 (887)
T ss_pred hhcCcc---cccccccceeEEeeecccccceec-cccccchhccchhcccc---cccccccccccccc-ccccHHHHHHH
Confidence 555553 778899999999999998877775 47888888888887776 443333 4555566 88888888866
Q ss_pred ccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEec-------ccccc-CCcchHHHHHHHHHHHHHcCCccccc
Q psy11896 681 PFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE-------TVGTN-VPKPFLPAIIKGFKQMCEKGCLSGSR 752 (1043)
Q Consensus 681 ~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~-------~~~~~-l~~~~~~~i~~g~~~~~~~G~l~g~p 752 (1043)
....+ |++. ..+-+-.-+|.++|..- +.++-|... ..+.+ +++ +-+++..||+-++..||||.+|
T Consensus 631 ~~~~e---k~~e-~~~~~~~~~~Afgp~r~--g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~Ep 703 (887)
T KOG0467|consen 631 LYEFE---KPRE-KLGSFKDQIIAFGPRRV--GPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNEP 703 (887)
T ss_pred Hhhcc---ccHH-HHHHHHhhhhccccccc--CCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccccC
Confidence 54421 1110 01111123446777542 223333211 11111 223 5678999999999999999999
Q ss_pred eeceEEEeecCCccccCC---hhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 753 VAGVRMVLKDGDNHMVDS---NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 753 v~~v~~~l~d~~~~~~~~---~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
+.++.|.+..+.-..+++ -.++.+.|++.+|++|++...++|+.|+|..+|++..+++|++|..|++|+|.+.+++.
T Consensus 704 ~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem 783 (887)
T KOG0467|consen 704 MQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEM 783 (887)
T ss_pred cccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhh
Confidence 999999998744333222 23789999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q psy11896 830 KD 831 (1043)
Q Consensus 830 ~~ 831 (1043)
+.
T Consensus 784 ~E 785 (887)
T KOG0467|consen 784 KE 785 (887)
T ss_pred hC
Confidence 53
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=200.29 Aligned_cols=143 Identities=45% Similarity=0.634 Sum_probs=120.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+|||+++|++|+|||||+++|+...+.+.....+. .+.+|+.+.|..+|+|+......+.+++..+++||||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~-----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~ 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVE-----ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCccc-----ccccccchhHHhcccccccceeEEEECCEEEEEEECCCc
Confidence 379999999999999999999997655544322111 245788888999999999999999999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHH
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 345 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~ 345 (1043)
.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+........++++.+
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999888888888888788999999999999976555444444443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=203.32 Aligned_cols=246 Identities=26% Similarity=0.269 Sum_probs=194.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------CeeEE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------DHNIN 270 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------~~~i~ 270 (1043)
.|++++||+|+|||||+.+|..... +...|..+...+||+|.+.....+... .-++.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~S--------------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGS--------------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhcc--------------chhhccCCcccccceeEeecceeeecccccccCccccceeE
Confidence 6899999999999999999963211 234678888999999999887766532 34689
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC-HHHHHHHHHHHhCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVGH 349 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~i~~~l~~ 349 (1043)
|+|+|||......+..+....|..++|||+..|.+.||.+.+-.........++|+||+|....+ ....++++.+++.
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~- 152 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR- 152 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999988888888999999999986322 1122222222111
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
T Consensus 153 -------------------------------------------------------------------------------- 152 (522)
T KOG0461|consen 153 -------------------------------------------------------------------------------- 152 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCC----CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKN----KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~----~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
+.|. .+-.+.-.|++.+||..| +++.+|.+++...+-.|. +++.+||.++
T Consensus 153 ----KtLe-~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~---------------------Rd~~gpflm~ 206 (522)
T KOG0461|consen 153 ----KTLE-STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK---------------------RDEEGPFLMA 206 (522)
T ss_pred ----HHHH-hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC---------------------cCCCCCeEEE
Confidence 1111 112233458899999999 899999999987776664 2388999999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
|...+..++ |++..+.|.+|.++.|+.+..+--+...||+.+. .-+.+|.+|.+||..+++
T Consensus 207 vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslq----mf~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 207 VDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQ----MFKQRVTSAAAGDRAGFC 268 (522)
T ss_pred eeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHH----HHhhhhhhhhcccceeee
Confidence 999999988 9999999999999999999988777777777765 234568899999998864
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=202.90 Aligned_cols=131 Identities=37% Similarity=0.494 Sum_probs=114.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----CeeEEEEcC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDT 274 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDt 274 (1043)
|||+++||+|+|||||+++|+...+.+...+....+ .++++|..+.|+++|+|+......+.|. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~--~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWK--PLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCC--ceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 789999999999999999999888776543332222 3567899999999999999988888765 378999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||.+|...+..+++.+|++++|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999999998899888888888889999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=205.49 Aligned_cols=292 Identities=23% Similarity=0.269 Sum_probs=215.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
++....|+.++||+++||||+-+.+++..+.+.++. .-..++..++++|...+|+..|-|+......|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 345568999999999999999999999888776532 2345667788999999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
...+++++|+|||-.|..+++.+...+|.+++|+.|..|- ..||+.+..+++..++. .|+++||||.+..++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997542 46999999999998885 577899999886554
Q ss_pred H-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCCh
Q psy11896 337 Y-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDE 415 (1043)
Q Consensus 337 ~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd 415 (1043)
. +.++++.+++...... .-|.
T Consensus 235 s~eRy~E~~~k~~~fLr~----------------------~g~n------------------------------------ 256 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRK----------------------LGFN------------------------------------ 256 (501)
T ss_pred chhhHHHHHHHHHHHHHH----------------------hccc------------------------------------
Confidence 2 2333333322210000 0000
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHh--CCCCCCCCccccccCcccceeeeC
Q psy11896 416 ILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY--LPNPGEVTNYAIENGQEDKKVVLN 493 (1043)
Q Consensus 416 ~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~--lPsp~~~~~~~~~~~~~~~~~~~~ 493 (1043)
..-.-.++|+ |.++|.++.+..+.++-+ .|++.+.- ..+-+
T Consensus 257 -----------------------~~~d~~f~p~---sg~tG~~~k~~~~s~cpwy~gp~fl~~l-----------d~l~~ 299 (501)
T KOG0459|consen 257 -----------------------PKPDKHFVPV---SGLTGANVKDRTDSVCPWYKGPIFLEYL-----------DELPH 299 (501)
T ss_pred -----------------------CCCCceeeec---ccccccchhhcccccCCcccCCccceeh-----------hccCc
Confidence 0001123444 777777776665422211 12222110 00112
Q ss_pred CCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEE--Ecc
Q psy11896 494 PSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFG 571 (1043)
Q Consensus 494 ~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~g 571 (1043)
.+++.++|+++.|..-+.|- |++.+++|-||++++||.+.+.+.+....|.+|| .+-.+++++.+|+.+- |.|
T Consensus 300 ~~R~~~GP~~~pI~~Kykdm-GTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~----~ddvE~~~~~pGenvk~rlkg 374 (501)
T KOG0459|consen 300 LERILNGPIRCPVANKYKDM-GTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY----SDDVETDRVAPGENVKLRLKG 374 (501)
T ss_pred ccccCCCCEEeehhhhcccc-ceEEEEEecccceecCCeEEEccCCcceEEEEEe----cccceeeeccCCcceEEEecc
Confidence 23458999999876555553 8999999999999999999999988889999999 6788899999999986 578
Q ss_pred C---ccccCcEEecCCCCc
Q psy11896 572 V---DCASGDTFVTDKNNS 587 (1043)
Q Consensus 572 l---~~~~Gdtl~~~~~~~ 587 (1043)
+ |+.+|-.|+ +++++
T Consensus 375 ieeedi~~GfiL~-~~~n~ 392 (501)
T KOG0459|consen 375 IEEEDISPGFILC-SPNNP 392 (501)
T ss_pred cchhhccCceEEe-cCCCc
Confidence 7 678898888 55443
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=212.92 Aligned_cols=200 Identities=24% Similarity=0.266 Sum_probs=166.0
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--- 86 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--- 86 (1043)
.++..||.|+.++|++|++++||++|+|++..+..|+.+.+.|+|+|+|||.+|...+...+.+||++|||||++.+
T Consensus 45 ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE 124 (428)
T COG5256 45 EAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE 124 (428)
T ss_pred HHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 87 ----VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
+..|+.++.-.++..|+. +|+++||||+++++.++. +++...+..+++..++... ..+.+||||.+|+|+
T Consensus 125 ~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf-~ei~~~v~~l~k~~G~~~~----~v~FIPiSg~~G~Nl 199 (428)
T COG5256 125 AGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF-EEIVSEVSKLLKMVGYNPK----DVPFIPISGFKGDNL 199 (428)
T ss_pred cccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH-HHHHHHHHHHHHHcCCCcc----CCeEEecccccCCcc
Confidence 889999998888888987 889999999998776544 5666666555555454332 246699999999999
Q ss_pred chHHHHHHhhccc-ccccccccccccc-ccccCCCCccceeeEE-----EEEeecCCccc
Q psy11896 162 TTLTERILFYTGR-ISEMHETSRWISN-ESLSEHKPIEYIRNIG-----ISAHIDSGKTT 214 (1043)
Q Consensus 162 ~~L~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~ir~i~-----ivG~~~~GKTT 214 (1043)
.+.-+...||.++ +++.++....+.. ...+++.+.+.+..|. .+|.+.+|.=.
T Consensus 200 ~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~ 259 (428)
T COG5256 200 TKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIK 259 (428)
T ss_pred cccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeec
Confidence 9888999999999 8888887776666 3457788888777643 45555555433
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=220.54 Aligned_cols=126 Identities=59% Similarity=0.853 Sum_probs=111.4
Q ss_pred ceeeeeecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+.|+ |-..+||+|.. .++++|+.+.|+++|+|++.....++|++++++||||||+.+|...
T Consensus 13 i~ii-G~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~ 91 (689)
T TIGR00484 13 IGIS-AHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVE 91 (689)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHH
Confidence 4445 88888887651 2378899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++++|+|+.+++..++..++.++...++|+++++||+|+.+++..+.++++++.++
T Consensus 92 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 92 VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999989999999999999988777777777777653
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=179.15 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=103.7
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++. ..+ ++.++++||++++++++|+++ +.++.|.+++.++.+|++|+++|++|+++++.+||| ||
T Consensus 1 VaYRETI~~~~~~-~~~-~~~~~~~~~a~v~l~veP~~~--g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-VEH-IEVPPNPFWATVGLRVEPLPR--GSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-EEE-EccCCCcEEEEEEEEEEECCC--CCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999998773 344 455577889999999999864 467999999999999999999999999999999999 99
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
||+|++|+|.|+++|.++|++.+|+.|+++|+++|+.+|
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a 114 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKA 114 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876
|
RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-21 Score=199.97 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=100.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-------------- 265 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 265 (1043)
+||+++||.|+|||||+++|. ...+|+.+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~------------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS------------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYR 62 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh------------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccc
Confidence 489999999999999999994 123677788899999998887777764
Q ss_pred -------------C------eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCC-CeEE
Q psy11896 266 -------------D------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDV-PCIA 324 (1043)
Q Consensus 266 -------------~------~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~-p~iv 324 (1043)
+ ++++|||||||.+|...+..+++.+|++++|+|+.+ +...++...+..+...++ |+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iii 142 (203)
T cd01888 63 SKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIII 142 (203)
T ss_pred cccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEE
Confidence 3 789999999999999999999999999999999998 467888888888777776 5888
Q ss_pred EEeccCCCC
Q psy11896 325 FINKLDRLG 333 (1043)
Q Consensus 325 viNKiD~~~ 333 (1043)
|+||+|+..
T Consensus 143 vvNK~Dl~~ 151 (203)
T cd01888 143 VQNKIDLVK 151 (203)
T ss_pred EEEchhccC
Confidence 999999864
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-19 Score=216.29 Aligned_cols=126 Identities=53% Similarity=0.828 Sum_probs=111.7
Q ss_pred ceeeeeecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+.|+ |-...||+|.. -++++|+.++|+++|+|++.....++|++++++|||||||.+|..+
T Consensus 11 i~ii-Gh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e 89 (691)
T PRK12739 11 IGIM-AHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIE 89 (691)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHH
Confidence 3444 77777877651 2368899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++|+|+|+.+++..++..++..+...++|+|+++||+|+...+....++++++.++
T Consensus 90 ~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 90 VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987777777777777654
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=192.93 Aligned_cols=119 Identities=27% Similarity=0.388 Sum_probs=103.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------------C
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------------D 266 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~ 266 (1043)
||+++||+|+|||||+++|+...+ ...+|....|+++|+|+......+.+. +
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~--------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS--------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEEN 67 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc--------------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccC
Confidence 799999999999999999985321 234677788999999999988888776 7
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+++||||||.+|...+..+.+.+|++++|+|+.+|...++...+..+...+.|+++|+||+|+..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 8999999999999988888888999999999999999988888777777777899999999999863
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >smart00838 EFG_C Elongation factor G C-terminus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-21 Score=170.88 Aligned_cols=84 Identities=40% Similarity=0.754 Sum_probs=80.5
Q ss_pred eecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 935 llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||||.|+|.||.+++|+|+++|++|||+|++++..++.+.|+|++|++++|||+++||+.|+|+|+++++|+||+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 68999999999999999999999999999999999877789999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy11896 1015 PEVQ 1018 (1043)
Q Consensus 1015 ~~~~ 1018 (1043)
++++
T Consensus 81 ~~~~ 84 (85)
T smart00838 81 KSIA 84 (85)
T ss_pred hhhc
Confidence 7654
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. |
| >PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=170.59 Aligned_cols=88 Identities=47% Similarity=0.778 Sum_probs=83.5
Q ss_pred eeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEeccccc
Q psy11896 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSP 1012 (1043)
Q Consensus 934 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~ 1012 (1043)
+||||||.++|.+|++++|+|+++|++|||.|++++.. ++.+.|+|.+|+++++||.++||+.|+|+|.|++.|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred CCHHHHHHH
Q psy11896 1013 ALPEVQDRL 1021 (1043)
Q Consensus 1013 ~~~~~~~~~ 1021 (1043)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999999875
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y .... |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-18 Score=208.41 Aligned_cols=130 Identities=48% Similarity=0.754 Sum_probs=116.9
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||||..- ++.+|+.+.|+++|+|+......+.|++++++||||||+.+|.
T Consensus 9 rni~ii-G~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 9 RNIGIL-AHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred cEEEEE-CCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 456666 999999999821 3577899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhc
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRW 133 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~ 133 (1043)
..+..+++.+|++++|+|++.+...++..++..+...++|+++++||+|+...+..+.++++++.++..
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999899999998888899999999999999888888888988877643
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=191.87 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=111.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeE-------------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAAT------------------- 260 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~------------------- 260 (1043)
+|+++|+.++|||||+++|... .. +++.. ....+|...+|.++|+|......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~------~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~ 72 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--EL------DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS 72 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--Cc------CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc
Confidence 4899999999999999999742 11 11111 12357888899999988643321
Q ss_pred -----EEEecCeeEEEEcCCCCCCchHHHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 261 -----YTLWKDHNINIIDTPGHVDFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 261 -----~~~~~~~~i~liDtPG~~df~~e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+..+++.++|+|||||.+|..++.+++. .+|++++|+|+.+|...++..++.++...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 12345789999999999999999999985 79999999999999999999999999999999999999999864
Q ss_pred C-CHHHHHHHHHHHhC
Q psy11896 334 A-DPYRVINQMRQKVG 348 (1043)
Q Consensus 334 ~-~~~~~~~~i~~~l~ 348 (1043)
. ...+.++++.+.+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3 34566677776665
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=212.80 Aligned_cols=273 Identities=23% Similarity=0.251 Sum_probs=183.7
Q ss_pred CcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------------eeEEEE
Q psy11896 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------------HNINII 272 (1043)
Q Consensus 211 GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------------~~i~li 272 (1043)
+||||+++|...+- +.+-.+|||.+.....+.+.. ..++||
T Consensus 473 ~KTtLLD~iR~t~v---------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fi 531 (1049)
T PRK14845 473 HNTTLLDKIRKTRV---------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFI 531 (1049)
T ss_pred ccccHHHHHhCCCc---------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEE
Confidence 39999999963321 133467888888877766542 138999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC-CCCH---HHHHHHHHHHhC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL-GADP---YRVINQMRQKVG 348 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~-~~~~---~~~~~~i~~~l~ 348 (1043)
|||||.+|.....++.+.+|++++|+|+.+|+..||..++..+...++|+++|+||+|+. ++.. ......+
T Consensus 532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~----- 606 (1049)
T PRK14845 532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNF----- 606 (1049)
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhh-----
Confidence 999999999888888899999999999999999999999999999999999999999985 2221 0011110
Q ss_pred CCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 349 HNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 349 ~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
....+...+++-+.+.+ +.. .|.+..+.
T Consensus 607 -----------------------------------------------~~q~~~~~~el~~~l~~----v~~-~L~~~G~~ 634 (1049)
T PRK14845 607 -----------------------------------------------NEQDQHALTELEIKLYE----LIG-KLYELGFD 634 (1049)
T ss_pred -----------------------------------------------hhhHHHHHHHHHHHHHH----Hhh-HHHhcCcc
Confidence 00111111111111100 000 01111122
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
.+... .+. ..+..+|++.+||++|.|++.|+++|....+.-.+.. +.. ++++|+.+.|..
T Consensus 635 ~e~~~-~~~---d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~--------------L~~--~~~~~~~g~VlE 694 (1049)
T PRK14845 635 ADRFD-RVQ---DFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEER--------------LKL--NVEGYAKGTILE 694 (1049)
T ss_pred hhhhh-hhh---hcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhh--------------hcc--CCCCceEEEEEE
Confidence 11110 111 1356789999999999999999998875433211100 011 167899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEec--------cCCeeecCeecCCCEEEEc--cC-cc
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLH--------SNEMEDVEEVLAGDIFALF--GV-DC 574 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~ 574 (1043)
++.+++ |.++.+.|++|+|++||.|...+.+. ..+|..|.... +.....++++.|+.-+-|. |+ ++
T Consensus 695 v~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~ 774 (1049)
T PRK14845 695 VKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774 (1049)
T ss_pred EEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc
Confidence 999988 99999999999999999999987543 46777776432 2235577888887777664 77 56
Q ss_pred ccCcEEe
Q psy11896 575 ASGDTFV 581 (1043)
Q Consensus 575 ~~Gdtl~ 581 (1043)
..|+.+.
T Consensus 775 ~aG~~~~ 781 (1049)
T PRK14845 775 LAGSPIR 781 (1049)
T ss_pred CCCCeEE
Confidence 6787765
|
|
| >cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=171.53 Aligned_cols=115 Identities=46% Similarity=0.857 Sum_probs=109.5
Q ss_pred EEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccce
Q psy11896 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 753 (1043)
Q Consensus 674 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv 753 (1043)
|||||+++++.++.+++++||.+||++++++++|+++ +.++.|.+++.++.+|++++++|++|+++++.+||+.|+||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~--g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPR--GSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCC--CCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 9999999988779999999999999999999999864 46889999999999999999999999999999999999999
Q ss_pred eceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 754 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 754 ~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
+|++|+|.++.+|..++++.+|+.|+++|+++|+.+|
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
|
Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi |
| >cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=161.87 Aligned_cols=78 Identities=55% Similarity=0.971 Sum_probs=76.0
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|.||.+++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||+++||+.|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999877889999999999999999999999999999999999999986
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig |
| >cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-20 Score=160.53 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=75.7
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||+++||+.|+|+|+|+++|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999877899999999999999999999999999999999999999873
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=178.90 Aligned_cols=143 Identities=47% Similarity=0.712 Sum_probs=116.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++|.+|+|||||+++|+...........+. ...++....+..+++|+......+.+.+..+++|||||+.+|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE-----ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee-----cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH
Confidence 589999999999999999986655433211111 134666778889999999888888999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHHhC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKVG 348 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~l~ 348 (1043)
...+..+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .......+.+.+.++
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 99999999999999999999999988888888888888999999999999985 344444555555443
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-19 Score=159.44 Aligned_cols=78 Identities=45% Similarity=0.880 Sum_probs=76.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||.|++++..++.+.|+|.+|++|+|||.++||+.|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999877799999999999999999999999999999999999999986
|
Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide |
| >cd01693 mtEFG2_like_IV mtEF-G2 domain IV | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=167.30 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=103.1
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCC--CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA--NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~--~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|+|||||+++++.++++++++||.+||+++.++++|++++. +..+.|.+.+ ++.+|++|+++|++|+++++.+|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 68999999998878999999999999999999999987543 2256776555 78899999999999999999999999
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
|+||+|++|+|.++.+|..+++...+ .|++.|+++|+.++
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a 119 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSA 119 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhc
Confidence 99999999999999999887775544 77999999999875
|
This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. |
| >cd01680 EFG_like_IV Elongation Factor G-like domain IV | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=166.55 Aligned_cols=115 Identities=25% Similarity=0.390 Sum_probs=109.0
Q ss_pred EEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccce
Q psy11896 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 753 (1043)
Q Consensus 674 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv 753 (1043)
|||||.++++..+.+++++||.++|+++.++++|+++ +.++.|.+++.++.+|++|+++|++||++++.+|||+|+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~--~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLER--GSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCC--CCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 9999999988888999999999999999999999875 46789999999999999999999999999999999999999
Q ss_pred eceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 754 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 754 ~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
+|++|+|.++.+|..++++++|+.|++.|+++|+.++
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKA 115 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
|
This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. |
| >cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=157.23 Aligned_cols=78 Identities=35% Similarity=0.534 Sum_probs=74.6
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.++|+||++++|+|+++|++|||.|++++..++ .+.|+|++|++|+|||.++||++|+|+|+|++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999999999999999998643 59999999999999999999999999999999999999986
|
Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-19 Score=153.11 Aligned_cols=75 Identities=39% Similarity=0.702 Sum_probs=70.6
Q ss_pred CCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 595 ~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
+|+|+++++|+|.++.|.++|.+||++|.+|||+|++.+|++|||++|+||||+||+|+++||+++||++++++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999873
|
... |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=193.59 Aligned_cols=158 Identities=28% Similarity=0.285 Sum_probs=128.6
Q ss_pred eeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+.+.|..++||||...+...........+|+|.+.....+.+++.+++|||||||.+|...+.++++.+|++|||+|+++
T Consensus 293 V~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 293 VTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred EEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC
Confidence 34449999999999766655555666678999999988899999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHH
Q psy11896 86 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165 (1043)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~ 165 (1043)
++..++.+.+..+...++|+|+++||+|++..+..+...++.+. +. +...+ ....+++++||++|.|+++|+
T Consensus 373 Gv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~------~~e~~-g~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 373 GVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GL------VPEEW-GGDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred CCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cc------cHHHh-CCCceEEEEeCCCCCCchHHH
Confidence 99999999999988899999999999999876655554444331 10 01111 122578999999999999999
Q ss_pred HHHHhh
Q psy11896 166 ERILFY 171 (1043)
Q Consensus 166 ~~l~~~ 171 (1043)
+.+.+.
T Consensus 445 e~I~~~ 450 (787)
T PRK05306 445 EAILLQ 450 (787)
T ss_pred Hhhhhh
Confidence 998864
|
|
| >cd01514 Elongation_Factor_C Elongation factor G C-terminus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-19 Score=154.87 Aligned_cols=78 Identities=51% Similarity=0.852 Sum_probs=76.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.++|+||++++|+|+++|++|||.|.+++..+ +.+.|+|++|++|+|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999999887 899999999999999999999999999999999999999885
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=189.71 Aligned_cols=158 Identities=28% Similarity=0.280 Sum_probs=126.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
++.++ |...+||||...+...........+|+|.+.....+.+++. +++|||||||.+|...+.++++.+|++|+|+|
T Consensus 89 ~V~I~-Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVd 167 (587)
T TIGR00487 89 VVTIM-GHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVA 167 (587)
T ss_pred EEEEE-CCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEE
Confidence 34455 99999999998777777777777789999998888888655 89999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcc
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~ 162 (1043)
++++...++.+.+..+...++|+++++||+|+++.+.++..+.+.+. + +.........+++++||++|.|++
T Consensus 168 a~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g-------~~~~~~~~~~~~v~iSAktGeGI~ 239 (587)
T TIGR00487 168 ADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-G-------LVPEDWGGDTIFVPVSALTGDGID 239 (587)
T ss_pred CCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-h-------hhHHhcCCCceEEEEECCCCCChH
Confidence 99999999999988888889999999999999866655554444321 1 100000112467999999999999
Q ss_pred hHHHHHHh
Q psy11896 163 TLTERILF 170 (1043)
Q Consensus 163 ~L~~~l~~ 170 (1043)
+|++.+..
T Consensus 240 eLl~~I~~ 247 (587)
T TIGR00487 240 ELLDMILL 247 (587)
T ss_pred HHHHhhhh
Confidence 99998863
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=152.28 Aligned_cols=77 Identities=27% Similarity=0.524 Sum_probs=74.4
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|||+.++|.||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|++|+|||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999876 68999999999999999999999999999999999999975
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=190.73 Aligned_cols=158 Identities=27% Similarity=0.313 Sum_probs=125.0
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec----CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~----~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+.++ |..++||||...+...........+|+|.+.....+.+. +..++|||||||.+|...+..+++.+|++|+|
T Consensus 247 V~Iv-GhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILV 325 (742)
T CHL00189 247 VTIL-GHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILI 325 (742)
T ss_pred EEEE-CCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEE
Confidence 4445 999999999977766666666777899988877666553 47899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|+.++...++.+.+..+...++|+|+++||+|++..+.++..+++... . . +...+ ....+++++||++|.|
T Consensus 326 VDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~-l-----l~e~~-g~~vpvv~VSAktG~G 397 (742)
T CHL00189 326 IAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-N-L-----IPEKW-GGDTPMIPISASQGTN 397 (742)
T ss_pred EECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-c-c-----chHhh-CCCceEEEEECCCCCC
Confidence 9999999999999999888889999999999999865554444444321 0 0 00001 1235789999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
+++|++.+...
T Consensus 398 IdeLle~I~~l 408 (742)
T CHL00189 398 IDKLLETILLL 408 (742)
T ss_pred HHHHHHhhhhh
Confidence 99999988755
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=198.97 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=120.2
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhHHH
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFI 776 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~~~ 776 (1043)
++-.|.+.| +..+++.|++++.|..+.++++++|++||+||+++|||||+||+||+|+|.|+++|. +++.+++|+
T Consensus 631 ~~~i~~~gp---~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~ 707 (843)
T PLN00116 631 AKKIWCFGP---ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQII 707 (843)
T ss_pred hcCeeeecC---CCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHH
Confidence 344566666 234569999999998888888899999999999999999999999999999999998 667788999
Q ss_pred HHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC--ceeeeh
Q psy11896 777 LAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYA 838 (1043)
Q Consensus 777 ~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~--~~~~~~ 838 (1043)
+|+++||++|+++|.++||||+|.+||.+|++++|.|+++|++|||.+..++..++ +..|.|
T Consensus 708 ~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A 771 (843)
T PLN00116 708 PTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKA 771 (843)
T ss_pred HHHHHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999998776443 244544
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=177.91 Aligned_cols=161 Identities=30% Similarity=0.348 Sum_probs=130.3
Q ss_pred eeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHH
Q psy11896 7 IIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~ 66 (1043)
.+.|..+.||++..- ++.+|..+.|+++|+|++.....+. ++++.++|+|||||.+|...
T Consensus 7 ~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~ 86 (188)
T PF00009_consen 7 AIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKE 86 (188)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHH
T ss_pred EEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeec
Confidence 334889999988711 1246788999999999999999999 89999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+..+++.+|++|+|+|+.+++..++.+++..+...++|+++|+||+|+...+..+..+++...+ ++...... ..
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l---~~~~~~~~---~~ 160 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKL---LKEYGENG---EE 160 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHH---HHHTTSTT---TS
T ss_pred ccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHh---ccccccCc---cc
Confidence 9999999999999999999999999999999999999999999999998444444444444333 11111110 03
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|+++|++.+..++|
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 578999999999999999999998876
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=195.22 Aligned_cols=127 Identities=39% Similarity=0.518 Sum_probs=106.1
Q ss_pred ccceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEE----EEecCeeEEEEeCCCCcc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATY----TLWKDHNINIIDTPGHVD 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~----~~~~~~~i~liDTPG~~~ 62 (1043)
.++.++ |..++||||..-+ +++|+.++|+++|+|++..... +++++++++|||||||.+
T Consensus 20 rnI~iv-Gh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIV-AHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEE-EeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 456677 9999999998333 3479999999999999976544 567789999999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhh
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKT 130 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~ 130 (1043)
|...+..+++.+|++|+|+|+..++..++..+++.+...++|.++++||+|+...+.....+.+++.+
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 99999999999999999999999999999999998888889999999999987654444444444443
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-18 Score=194.83 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=135.6
Q ss_pred cCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHH
Q psy11896 18 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 97 (1043)
Q Consensus 18 s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~ 97 (1043)
|+.++|++|..++|+++|+|++.....+++++.+++|||||||.+|...+..++..+|++++|+|+..++..++.+++..
T Consensus 48 ~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 48 EIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred ceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-c
Q psy11896 98 MKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-I 175 (1043)
Q Consensus 98 l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~ 175 (1043)
+...++| +++++||+|+...+. ..++.+.+.+..++...+ +...+++|+||++|.|++++.+.+.||.++ +
T Consensus 128 ~~~~~~~~iivviNK~D~~~~~~-~~~~~i~~~~~~~~~~~~------~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL 200 (406)
T TIGR02034 128 ASLLGIRHVVLAVNKMDLVDYDE-EVFENIKKDYLAFAEQLG------FRDVTFIPLSALKGDNVVSRSESMPWYSGPTL 200 (406)
T ss_pred HHHcCCCcEEEEEEecccccchH-HHHHHHHHHHHHHHHHcC------CCCccEEEeecccCCCCcccccCCCccchhHH
Confidence 8887775 888999999976443 334444444433332211 123468999999999999988888888765 5
Q ss_pred cccccccccccc-ccccCCCCcccee
Q psy11896 176 SEMHETSRWISN-ESLSEHKPIEYIR 200 (1043)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~ir 200 (1043)
.+.++....+.. ...+.+++.+++.
T Consensus 201 ~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 201 LEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHhcCCCCCcCCCCcccceEEEe
Confidence 455544333322 1224555555443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=166.00 Aligned_cols=115 Identities=29% Similarity=0.394 Sum_probs=95.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d 279 (1043)
+|+++|++|+|||||+++|+... .+..+.+..+++|+......+.+. +..+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc------------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH
Confidence 68999999999999999996321 122334566788888877777776 88999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~ 333 (1043)
|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 98888888999999999999999888888887776666666 9999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-16 Score=193.04 Aligned_cols=109 Identities=45% Similarity=0.541 Sum_probs=96.2
Q ss_pred eeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEe----cCeeEEEEeCCCCcchHHHHH
Q psy11896 9 HIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLW----KDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 9 ~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~----~~~~i~liDTPG~~~~~~~~~ 68 (1043)
.|-.+.||||.. .++++|+.++|+++|+|++.....+.| .+++++|+|||||.+|...+.
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~ 105 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVT 105 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHH
Confidence 377888887761 246799999999999999998776665 477899999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 117 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~ 117 (1043)
.+++.+|++|+|+|+..++..++..+++.+...++|.|+++||+|+...
T Consensus 106 ~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 106 RAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIK 154 (731)
T ss_pred HHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcc
Confidence 9999999999999999999999999999988888999999999998644
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=196.10 Aligned_cols=182 Identities=24% Similarity=0.289 Sum_probs=135.0
Q ss_pred ccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC--CCchhHH
Q psy11896 15 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTL 92 (1043)
Q Consensus 15 gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~--~~~~~~~ 92 (1043)
|+.++.++|++|+.++|+++|+|++.....+++++++++|||||||.+|...+...++.+|++++|+|+++ ++..++.
T Consensus 49 g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 49 GKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred CCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 55556668899999999999999999999999999999999999999999988888999999999999998 8888888
Q ss_pred HHHHHHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 93 TVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 93 ~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++..+...++ |+++++||+|+.+.+.+. ++.+.+.+..++...++. ....+++++||++|.|++++.+.+.||
T Consensus 129 ~~~~~~~~~~~~~iivviNK~Dl~~~~~~~-~~~~~~~i~~~l~~~g~~----~~~~~ii~iSA~~g~gi~~~~~~~~wy 203 (425)
T PRK12317 129 EHVFLARTLGINQLIVAINKMDAVNYDEKR-YEEVKEEVSKLLKMVGYK----PDDIPFIPVSAFEGDNVVKKSENMPWY 203 (425)
T ss_pred HHHHHHHHcCCCeEEEEEEccccccccHHH-HHHHHHHHHHHHHhhCCC----cCcceEEEeecccCCCccccccCCCcc
Confidence 88888777776 589999999997643322 222222222222221211 113478999999999999999889999
Q ss_pred ccc-cccccccccccccc-cccCCCCccceee
Q psy11896 172 TGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 172 l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
.++ +.+.++....+... ..+.+++.+++.+
T Consensus 204 ~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 204 NGPTLLEALDNLKPPEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred cHHHHHHHHhcCCCCccccCCCcEEEEEEEEe
Confidence 876 55565544333222 2244555555544
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-15 Score=185.71 Aligned_cols=109 Identities=63% Similarity=0.969 Sum_probs=100.0
Q ss_pred ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcC
Q psy11896 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 102 (1043)
Q Consensus 23 ~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~ 102 (1043)
+++|+.+.|+++|+|++.....+.++++.++||||||+.+|...+..+++.+|++++|+|++.+...++..++..+...+
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~ 112 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYG 112 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999999998888888888888889
Q ss_pred CCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 103 VPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 103 ~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+|+++|+||+|+...+..+.++++++.++
T Consensus 113 ~p~iiv~NK~D~~~~~~~~~~~~l~~~l~ 141 (668)
T PRK12740 113 VPRIIFVNKMDRAGADFFRVLAQLQEKLG 141 (668)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHC
Confidence 99999999999987776667777776554
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=185.58 Aligned_cols=142 Identities=38% Similarity=0.477 Sum_probs=129.6
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 96 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~ 96 (1043)
....++|+...||++|+|+...+..+.|.+ +.+++||||||.||..++.+.+..||++|+||||..|++.|+...+.
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~ 171 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFY 171 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHH
Confidence 566788999999999999999999888888 89999999999999999999999999999999999999999999888
Q ss_pred HHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 97 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 97 ~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+.+.+..+|.|+||+|++.+++++...++.+.|. +...+++.+||++|.|++++++.+....|+
T Consensus 172 lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~-------------~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 172 LAFEAGLAIIPVLNKIDLPSADPERVENQLFELFD-------------IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhc-------------CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 88899999999999999999999988888877653 334578999999999999999999987764
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=173.27 Aligned_cols=281 Identities=16% Similarity=0.203 Sum_probs=203.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccchhhhhhcCceEeeee-------------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSMELERQRGITIQSAA------------------- 259 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~~~e~~~giTi~~~~------------------- 259 (1043)
.+|+++|++++|||||+..|.. ++.++|...+ +-++....|.+.|-|-....
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 4799999999999999998863 2344443322 23455556666665442221
Q ss_pred EEEEec------CeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 260 TYTLWK------DHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 260 ~~~~~~------~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
.+++|- .+.++|||.+||+.|.+.+..++ ...|...++|.+..|+-..|.+++.++....+|+++|++|||.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 123331 25799999999999999988888 6889999999999999999999999999999999999999999
Q ss_pred CCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHH
Q psy11896 332 LGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV 410 (1043)
Q Consensus 332 ~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l 410 (1043)
..++. ++.+..+.+.+...-+ ..+|+--.+ ..|++. ...+
T Consensus 286 CPANiLqEtmKll~rllkS~gc-rK~PvlVrs----~DDVv~--------------~A~N-------------------- 326 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGC-RKLPVLVRS----MDDVVH--------------AAVN-------------------- 326 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCc-ccCcEEEec----ccceEE--------------eecc--------------------
Confidence 98774 5666666666654211 122221000 000000 0000
Q ss_pred hcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 411 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 411 ~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
+...+.+|+|-+|..+|.++ +||.++.+.+|.-....
T Consensus 327 -----------------------------F~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~~------------- 363 (641)
T KOG0463|consen 327 -----------------------------FPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQLN------------- 363 (641)
T ss_pred -----------------------------CccccccceEEeccccCCCh-HHHHHHHhhcCcccccc-------------
Confidence 11345789999999999999 78889988887543211
Q ss_pred eeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCC
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGD 565 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGd 565 (1043)
.+.|.-.+|..+|+.++ |+++-+...+|+++-+|.+...++. -...|++|. +++-+|..+.+|+
T Consensus 364 -------E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQ 432 (641)
T KOG0463|consen 364 -------ENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQ 432 (641)
T ss_pred -------cCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccc
Confidence 46677888999999999 9999999999999999999877643 234566665 7888999999999
Q ss_pred EE--EEccC---ccccCcEEe
Q psy11896 566 IF--ALFGV---DCASGDTFV 581 (1043)
Q Consensus 566 Iv--~i~gl---~~~~Gdtl~ 581 (1043)
-. ++.++ +++.|.++.
T Consensus 433 tASFALKKIkr~~vRKGMVmV 453 (641)
T KOG0463|consen 433 TASFALKKIKRKDVRKGMVMV 453 (641)
T ss_pred hhhhHhhhcchhhhhcceEEe
Confidence 76 45666 778999988
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=193.70 Aligned_cols=184 Identities=24% Similarity=0.270 Sum_probs=137.7
Q ss_pred ccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-----
Q psy11896 13 EQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV----- 87 (1043)
Q Consensus 13 ~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~----- 87 (1043)
..|++++.++|++|+.++|+++|+|++.....++++++.++|+|||||.+|...+..++..+|++++|+|+..|.
T Consensus 48 ~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~ 127 (446)
T PTZ00141 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGI 127 (446)
T ss_pred hhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceeccc
Confidence 345666677789999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --chhHHHHHHHHHhcCCC-EEEEEecCCCCC--CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcc
Q psy11896 88 --QSQTLTVNRQMKRYDVP-CIAFINKLDRLG--ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 88 --~~~~~~~~~~l~~~~~p-iilvlNKiDl~~--~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~ 162 (1043)
..|+.+++..+...++| +|+++||+|+.. ++. ..++.+.+.+...+...++. ....+++|+||.+|+|+.
T Consensus 128 ~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~-~~~~~i~~~i~~~l~~~g~~----~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 128 SKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ-ERYDEIKKEVSAYLKKVGYN----PEKVPFIPISGWQGDNMI 202 (446)
T ss_pred CCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH-HHHHHHHHHHHHHHHhcCCC----cccceEEEeecccCCCcc
Confidence 47999999999999998 679999999543 222 22344444444333332322 123678999999999998
Q ss_pred hHHHHHHhhccc-cccccccccccccc-cccCCCCccceee
Q psy11896 163 TLTERILFYTGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 163 ~L~~~l~~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
+..+.+.||.++ +.+.+.....+... ..+.+++.+++.+
T Consensus 203 ~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~ 243 (446)
T PTZ00141 203 EKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYK 243 (446)
T ss_pred cCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEe
Confidence 877778888776 55665543332221 2234455554443
|
|
| >cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-18 Score=148.41 Aligned_cols=77 Identities=27% Similarity=0.552 Sum_probs=73.8
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|||+.++|.||++++|+|+++|++|||+|++++..+ +...|+|.+|++++ +||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999866 58999999999999 599999999999999999999999975
|
LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=170.69 Aligned_cols=192 Identities=27% Similarity=0.275 Sum_probs=139.5
Q ss_pred eeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
+.+.|--..||||..- .+-.+.-.+ ..-|+|.+.....+.++ ...++|+|||||..|..+..+..+.+|+++||+
T Consensus 8 VtimGHVDHGKTtLLD-~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 8 VTIMGHVDHGKTTLLD-KIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEeCcccCCccchhh-hHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 3443555566666532 222222233 34478999999999885 358999999999999999999999999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|+.+|+.+|+.+.+..++..+.|+++++||+|++..++.+...++++. ++..........++|+||++|+|+
T Consensus 87 a~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--------gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 87 AADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--------GLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--------CCCHhhcCCceEEEEeeccCCCCH
Confidence 999999999999999999999999999999999988888887777653 232222122367899999999999
Q ss_pred chHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 162 TTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 162 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
++|++.+.-...-+ +.. ..+..+-+-.++=...+-|.-+++..|+
T Consensus 159 ~eLL~~ill~aev~----elk----------a~~~~~a~gtviE~~~dkG~G~vatviv 203 (509)
T COG0532 159 DELLELILLLAEVL----ELK----------ANPEGPARGTVIEVKLDKGLGPVATVIV 203 (509)
T ss_pred HHHHHHHHHHHHHH----hhh----------cCCCCcceEEEEEEEeccCCCceEEEEE
Confidence 99999886433221 111 1111223445566666677777776665
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=185.97 Aligned_cols=197 Identities=23% Similarity=0.294 Sum_probs=154.9
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--- 86 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--- 86 (1043)
.....||.|+.++|++|++.+||++|+|.+.....|+.+.+.++|+|+|||.+|...++.....||++++|+|++.+
T Consensus 215 es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE 294 (603)
T KOG0458|consen 215 ESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFE 294 (603)
T ss_pred HHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999832
Q ss_pred ----CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhcc-ccccccCCCCccceeeeeeeecccCC
Q psy11896 87 ----VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWI-SNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+..|+.++...++..|+. +|+++||+|+++++.++. +++...++.++ +..++... + ...+|||+.+|+|
T Consensus 295 ~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF-~eIk~~l~~fL~~~~gf~es-~---v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 295 SGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRF-EEIKNKLSSFLKESCGFKES-S---VKFIPISGLSGEN 369 (603)
T ss_pred hccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHH-HHHHHHHHHHHHHhcCcccC-C---cceEecccccCCc
Confidence 567889999999999986 889999999999887655 77777787777 55554432 1 2458999999999
Q ss_pred cchH---HHHHHhhccc-cccccccccccccccc-cCCCCcccee-----eEEEEEeecCC
Q psy11896 161 KTTL---TERILFYTGR-ISEMHETSRWISNESL-SEHKPIEYIR-----NIGISAHIDSG 211 (1043)
Q Consensus 161 i~~L---~~~l~~~l~~-~~~~~~~~~~~~~~~~-~~~~~~~~ir-----~i~ivG~~~~G 211 (1043)
+... -+...||.++ +++.++....+.+... +.+.....+. -+++-|...+|
T Consensus 370 L~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG 430 (603)
T KOG0458|consen 370 LIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESG 430 (603)
T ss_pred ccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEecc
Confidence 8655 2557899998 7777776555544422 3333322221 14555665555
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-17 Score=191.09 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=138.1
Q ss_pred cccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC------
Q psy11896 14 QVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV------ 87 (1043)
Q Consensus 14 ~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~------ 87 (1043)
.++.++.++|++|..++|+++|+|++.....++++++.++|+|||||.+|...+..++..+|++|+|+|++++.
T Consensus 49 ~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~ 128 (447)
T PLN00043 49 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS 128 (447)
T ss_pred hcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchH
Q psy11896 88 -QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 88 -~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L 164 (1043)
..++.+++..+...++| +|+++||+|+...+. +...+++.+.+..++...++. ....+++|+||++|+|+.+.
T Consensus 129 ~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~----~~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 129 KDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN----PDKIPFVPISGFEGDNMIER 204 (447)
T ss_pred CCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCC----cccceEEEEecccccccccc
Confidence 26888888888889996 688999999863221 222334444444444433332 12246799999999999887
Q ss_pred HHHHHhhccc-ccccccccccccc-ccccCCCCccceeeE
Q psy11896 165 TERILFYTGR-ISEMHETSRWISN-ESLSEHKPIEYIRNI 202 (1043)
Q Consensus 165 ~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~ir~i 202 (1043)
.+.+.||.++ +.+.++.-..+.. ...+.+++.+++.++
T Consensus 205 ~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 205 STNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred ccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEe
Confidence 7778888776 5566554333222 223556666666553
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=180.39 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=99.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+.|+|+|.+|+|||||.|+|+...-.+ .++.+|+|.+..+...+|.++.+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI--------------------V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI--------------------VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE--------------------eecCCCCccCCccceeEEcCceEEEEECCCCCc
Confidence 569999999999999999998543332 334889999999999999999999999999875
Q ss_pred ch---------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FT---------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~---------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.. .+++.|+..||++|||||+.+|++++...+.+.++..++|+++|+||+|..
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 33 235778899999999999999999999999999998889999999999975
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=191.82 Aligned_cols=158 Identities=26% Similarity=0.326 Sum_probs=125.8
Q ss_pred cCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHH
Q psy11896 18 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 97 (1043)
Q Consensus 18 s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~ 97 (1043)
++.++|++|+.++|+++|+|++.....+++++.+++|||||||.+|...+...+..+|++++|+|+..++..++.+++..
T Consensus 75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l 154 (474)
T PRK05124 75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFI 154 (474)
T ss_pred ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-c
Q psy11896 98 MKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-I 175 (1043)
Q Consensus 98 l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~ 175 (1043)
+...++ |+|+++||+|+.+.+. ..++.+.+.+..++...++ ....+++|+||++|.|++++.+.+.||.++ +
T Consensus 155 ~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i~~~l~~~~~~~~~-----~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tL 228 (474)
T PRK05124 155 ATLLGIKHLVVAVNKMDLVDYSE-EVFERIREDYLTFAEQLPG-----NLDIRFVPLSALEGDNVVSQSESMPWYSGPTL 228 (474)
T ss_pred HHHhCCCceEEEEEeeccccchh-HHHHHHHHHHHHHHHhcCC-----CCCceEEEEEeecCCCcccccccccccchhhH
Confidence 777775 5889999999975443 3334444444332222111 124678999999999999988888888776 5
Q ss_pred cccccc
Q psy11896 176 SEMHET 181 (1043)
Q Consensus 176 ~~~~~~ 181 (1043)
.+.++.
T Consensus 229 l~~L~~ 234 (474)
T PRK05124 229 LEVLET 234 (474)
T ss_pred HHHHhh
Confidence 554443
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=176.63 Aligned_cols=179 Identities=25% Similarity=0.335 Sum_probs=149.1
Q ss_pred cccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHH
Q psy11896 14 QVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93 (1043)
Q Consensus 14 ~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~ 93 (1043)
..+..+.++.++|-...|++.|+|+|..+.+|.....+|.+.|||||+.|.+.+......||++|++||++.|+.+|+..
T Consensus 50 t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR 129 (431)
T COG2895 50 TQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR 129 (431)
T ss_pred CCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 94 VNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 94 ~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.....-.|++ +++++|||||.+.+.+ ..+++...+..+..+.+ +....++|+||..|.|+-.--+.+.||.
T Consensus 130 Hs~I~sLLGIrhvvvAVNKmDLvdy~e~-~F~~I~~dy~~fa~~L~------~~~~~~IPiSAl~GDNV~~~s~~mpWY~ 202 (431)
T COG2895 130 HSFIASLLGIRHVVVAVNKMDLVDYSEE-VFEAIVADYLAFAAQLG------LKDVRFIPISALLGDNVVSKSENMPWYK 202 (431)
T ss_pred HHHHHHHhCCcEEEEEEeeecccccCHH-HHHHHHHHHHHHHHHcC------CCcceEEechhccCCcccccccCCCccc
Confidence 98888888887 7899999999987754 44667766655555433 3334679999999999999999999999
Q ss_pred cc-cccccccccccccccc-cCCCCccce
Q psy11896 173 GR-ISEMHETSRWISNESL-SEHKPIEYI 199 (1043)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~i 199 (1043)
++ +++.++.......... +.+.|.+.+
T Consensus 203 GptLLe~LE~v~i~~~~~~~~~RfPVQ~V 231 (431)
T COG2895 203 GPTLLEILETVEIADDRSAKAFRFPVQYV 231 (431)
T ss_pred CccHHHHHhhccccccccccceeeceEEe
Confidence 99 8888888765544433 355565543
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-17 Score=172.53 Aligned_cols=156 Identities=27% Similarity=0.330 Sum_probs=120.7
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
..++++|..+.|+++|+|++.....+++++.+++||||||+.+|...+..+++.+|++|+|+|++.++..++..++..+.
T Consensus 47 ~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 47 DLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILS 126 (208)
T ss_pred ceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999988999999999999999999988888877777777
Q ss_pred hcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccc
Q psy11896 100 RYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISE 177 (1043)
Q Consensus 100 ~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~ 177 (1043)
..++| +|+|+||+|+...+.. ..+.+...+..++.. ......+++++||++|.|+++....+.||.++ +.+
T Consensus 127 ~~~~~~iIvviNK~D~~~~~~~-~~~~i~~~~~~~~~~------~~~~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~ 199 (208)
T cd04166 127 LLGIRHVVVAVNKMDLVDYSEE-VFEEIVADYLAFAAK------LGIEDITFIPISALDGDNVVSRSENMPWYSGPTLLE 199 (208)
T ss_pred HcCCCcEEEEEEchhcccCCHH-HHHHHHHHHHHHHHH------cCCCCceEEEEeCCCCCCCccCCCCCCCCCCCcHHH
Confidence 77765 7789999999754332 112222222211111 11223468999999999999988888999887 555
Q ss_pred ccccc
Q psy11896 178 MHETS 182 (1043)
Q Consensus 178 ~~~~~ 182 (1043)
.++..
T Consensus 200 ~~~~~ 204 (208)
T cd04166 200 HLETV 204 (208)
T ss_pred HHhcC
Confidence 54443
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=181.52 Aligned_cols=257 Identities=20% Similarity=0.237 Sum_probs=155.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~~~i~liDtPG~~ 278 (1043)
+-+||+||+|+|||-|++.|...+-.-...|.+..... ..|.|.+..+.-|-... .....++--.+.+||||||.
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIg----At~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIG----ATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeecc----ccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 46899999999999999999654333333222222111 11222221111111000 00111223458899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CC---HHHHHHHHHHHhCCCceee
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-AD---PYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~---~~~~~~~i~~~l~~~~~~~ 354 (1043)
.|.+...++...||.+|+|||..+|+.+||.+.+.+++..+.|+|+++||+||+- +. ...+.+.+.+.-+
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k------ 625 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK------ 625 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH------
Confidence 9999999999999999999999999999999999999999999999999999972 10 0111111111000
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
.+-.+|..+ -..++-.+++..-. .+.|++.
T Consensus 626 -----------------------------------~v~~EF~~R----~~~ii~efaEQgLN-~~LyykN---------- 655 (1064)
T KOG1144|consen 626 -----------------------------------DVQNEFKER----LNNIIVEFAEQGLN-AELYYKN---------- 655 (1064)
T ss_pred -----------------------------------HHHHHHHHH----HHHHHHHHHHcccc-hhheeec----------
Confidence 000111111 11222222221100 1123222
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
.-.+.++.++.+||.+|.||-.||-.|+.+.-..... ++. ....+-+.|.-+-..++
T Consensus 656 -----k~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~---kl~---------------y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 656 -----KEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE---KLA---------------YVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred -----ccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH---HHh---------------hhhheeeEEEEEEeecC
Confidence 1256788999999999999999999988765322110 000 12234445555555555
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCC
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTD 539 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~ 539 (1043)
|.-.-+-+..|.|+.||.|.+++.+
T Consensus 713 ~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEEcCCC
Confidence 7766666789999999999987643
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-17 Score=167.83 Aligned_cols=152 Identities=23% Similarity=0.253 Sum_probs=120.0
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|+.++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 5 i~ii-Gh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~ 83 (195)
T cd01884 5 VGTI-GHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMI 83 (195)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHH
Confidence 4455 77777877762 124689999999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++| +|+++||+|+.. + .+..+.+.+.+...+...++. ...
T Consensus 84 ~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~-~~~~~~~~~~i~~~l~~~g~~----~~~ 157 (195)
T cd01884 84 TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD-D-EELLELVEMEVRELLSKYGFD----GDN 157 (195)
T ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-c-HHHHHHHHHHHHHHHHHhccc----ccC
Confidence 999999999999999999999999999999999998 789999999863 2 223333333333333332221 224
Q ss_pred eeeeeeeecccCCcch
Q psy11896 148 IRNIGISAHIDSGKTT 163 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~ 163 (1043)
.+++|+||++|.|+.+
T Consensus 158 v~iipiSa~~g~n~~~ 173 (195)
T cd01884 158 TPIVRGSALKALEGDD 173 (195)
T ss_pred CeEEEeeCccccCCCC
Confidence 6789999999999753
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=167.73 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=95.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.--|||+|.+|+|||||+|+|+.+.-.+ ..+..++|.......+..+++++.|+||||..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisI--------------------vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih 65 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISI--------------------VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH 65 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEe--------------------ecCCcchhhhheeEEEEcCCceEEEEeCCCCC
Confidence 3459999999999999999998665443 22366677777777778889999999999953
Q ss_pred C--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. ....+..++..+|.+++|+|+.++.....+.++..+...+.|+++++||+|+..
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 3 234467788999999999999999999999999999887889999999999874
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-17 Score=178.67 Aligned_cols=141 Identities=37% Similarity=0.497 Sum_probs=127.1
Q ss_pred CccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~ 94 (1043)
+.+.++|++..|+++|+|+..+...+.+. .+.++|||||||.||.-++.+++..|.++++||||+.|+..|+...
T Consensus 41 m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN 120 (603)
T COG0481 41 MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN 120 (603)
T ss_pred HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHH
Confidence 56678899999999999999998877764 3689999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+.+.+.-+|-|+||+||+.+++++..+++++.++ +.-...+.+||++|.|++++++.+....|
T Consensus 121 ~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 121 VYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-------------IDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-------------CCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 8888889999999999999999999999999888764 33345688999999999999999998776
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-17 Score=197.52 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=170.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+..... .....|+|++.....+.++++.++++||||+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~---------------------vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR---------------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc---------------------cCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 57999999999999999999633211 122578899888888899999999999999988
Q ss_pred chHH--------H--HHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHH
Q psy11896 280 FTVE--------V--ERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQK 346 (1043)
Q Consensus 280 f~~e--------~--~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~ 346 (1043)
|... . ...+ ..+|++++|+|+.+.. +....+.++.+.++|+++|+||+|+.+ .......+++.+.
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~ 140 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR 140 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH
Confidence 7531 1 1222 3789999999998753 334566778889999999999999863 3445567888889
Q ss_pred hCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC-ChHHHHHHhccC
Q psy11896 347 VGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG-DEILGEMFLEEK 425 (1043)
Q Consensus 347 l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~-dd~l~~~~l~~~ 425 (1043)
++..+.+++.+.+.+ ...+.+.+... .+ ..+ ....+.|++..+.+++.++.+.+.+++. ++.++.+|+++.
T Consensus 141 LG~pVvpiSA~~g~G--IdeL~~~I~~~---~~-~~~--~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 141 LGCPVIPLVSTRGRG--IEALKLAIDRH---QA-NEN--VELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred hCCCEEEEEeecCCC--HHHHHHHHHHh---hh-ccC--CcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 998777776655443 11111111110 01 001 1124467777777888888888877765 778899999987
Q ss_pred CCCHH------HHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhC
Q psy11896 426 SISED------DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 470 (1043)
Q Consensus 426 ~~~~~------~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~l 470 (1043)
..+.+ +..+.+++........|.+++++.+..+++.+++.+....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55443 4445555555555567888999999999999999998654
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=162.60 Aligned_cols=155 Identities=35% Similarity=0.468 Sum_probs=120.1
Q ss_pred ceeeeeecccccccCCcc---------------ccCCChhhhhhcCCccccceEEEEe-----cCeeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDNVG---------------AVMDSMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~---------------~~~d~~~~e~~~G~T~~~~~~~~~~-----~~~~i~liDTPG~~~~~ 64 (1043)
+.++ |..++||+|...+ ++.++.+.++++|+|.+.....+.+ .+.+++||||||+.++.
T Consensus 3 i~~v-G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 3 FSII-AHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred EEEE-eecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 4455 9999999998433 3456667788999999887666644 35679999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.......+++.+.++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~------------- 148 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG------------- 148 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-------------
Confidence 9999999999999999999988777777776666667899999999999875444333344443321
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
....+++++||++|.|+++|++.+...++
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 149 LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 12235789999999999999999986653
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=158.11 Aligned_cols=114 Identities=35% Similarity=0.407 Sum_probs=92.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG~ 277 (1043)
.|+++|++|+|||||+++|+..... ....+++|.........+. +..+++|||||+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~ 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA---------------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc---------------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCc
Confidence 5899999999999999999732110 1123455655555555554 789999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
.+|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+
T Consensus 61 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 61 EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 9998888888999999999999999988888888888888999999999999987433
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=166.40 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=125.1
Q ss_pred cceeeeeecccccccCCcccc-------CCChhhhhhcCCccccceEEEEec--------------CeeEEEEeCCCCcc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAV-------MDSMELERQRGITIQSAATYTLWK--------------DHNINIIDTPGHVD 62 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~-------~d~~~~e~~~G~T~~~~~~~~~~~--------------~~~i~liDTPG~~~ 62 (1043)
++.++ |..++||+|.....+ .|...+|+++|+|++.....+.+. ++++++|||||+.+
T Consensus 2 ~i~i~-G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 2 NVGVL-GHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred eEEEE-ecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 46677 999999999854443 588899999999999988777765 67899999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccC
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
+...+..+...+|++++|+|++++...++...+......++|+++++||+|+... ..+...+++++.+...+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~----- 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK----- 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh-----
Confidence 8888888889999999999999888777766666666668899999999998743 2333345554443322111
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+....+
T Consensus 156 -~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 -TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred -cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 0112347899999999999999999876554
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-17 Score=172.70 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=115.7
Q ss_pred cccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC-------CCc
Q psy11896 16 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQ 88 (1043)
Q Consensus 16 k~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~-------~~~ 88 (1043)
++++.+++++|+.++|+++|+|++.....+++++.++++|||||+.+|...+..+++.+|++|+|+|+++ +..
T Consensus 43 ~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 43 KGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred CcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 3334455789999999999999999999999999999999999999999999999999999999999987 345
Q ss_pred hhHHHHHHHHHhcC-CCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHH
Q psy11896 89 SQTLTVNRQMKRYD-VPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTE 166 (1043)
Q Consensus 89 ~~~~~~~~~l~~~~-~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~ 166 (1043)
.++...+..+...+ +|+++++||+|+...+ .....+.+.+.+...+...++ .....+++++||++|.|+++--+
T Consensus 123 ~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~----~~~~~~ii~iSA~tg~gi~~~~~ 198 (219)
T cd01883 123 GQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGY----NPKDVPFIPISGLTGDNLIEKSE 198 (219)
T ss_pred cchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCC----CcCCceEEEeecCcCCCCCcCCC
Confidence 56666666666666 5789999999997421 111122333332222222111 11235789999999999997777
Q ss_pred HHHhhccc
Q psy11896 167 RILFYTGR 174 (1043)
Q Consensus 167 ~l~~~l~~ 174 (1043)
.+.||.++
T Consensus 199 ~~~w~~g~ 206 (219)
T cd01883 199 NMPWYKGP 206 (219)
T ss_pred CCCCccCC
Confidence 77777765
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-17 Score=159.30 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=84.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+|+|+.....+ ...+|+|+......+.+++..+.|+|+||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v---------------------~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV---------------------GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE---------------------EESTTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee---------------------cCCCCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 69999999999999999998544221 226789999999999999999999999996543
Q ss_pred h---H-H--HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 T---V-E--VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~---~-e--~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
. . | +..++ ...|++++|+||.. ..+...+..++.+.++|+++++||+|..
T Consensus 61 ~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 61 SSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 2 2 2 23333 68999999999987 4566778888899999999999999964
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=166.54 Aligned_cols=170 Identities=19% Similarity=0.147 Sum_probs=136.3
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhcC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLD 75 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~aD 75 (1043)
+-|+ |-+.+||++..-+.+...- -..++|+|||....+.+..++.++.|+||||+.. +...+..++.++|
T Consensus 9 VaIi-GrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 9 VAII-GRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEE-cCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 3455 8888888887655555443 4778999999999999999999999999999873 6677889999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+++||+|+.+++...++.++..++..+.|+++++||+|+...+.. + ..+.+.+. ....|..++|+||
T Consensus 88 lilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~-l-~~~~~~~~-----------~~~~f~~ivpiSA 154 (298)
T COG1159 88 LILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV-L-LKLIAFLK-----------KLLPFKEIVPISA 154 (298)
T ss_pred EEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH-H-HHHHHHHH-----------hhCCcceEEEeec
Confidence 999999999999999999999998878899999999998764321 1 22222221 2245568999999
Q ss_pred cccCCcchHHHHHHhhccccccccccccccccc
Q psy11896 156 HIDSGKTTLTERILFYTGRISEMHETSRWISNE 188 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~ 188 (1043)
++|.|++.|.+.+..++++-+-+++.+...+..
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~ 187 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRP 187 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChhhccCCh
Confidence 999999999999999999877777666554444
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=160.70 Aligned_cols=286 Identities=17% Similarity=0.211 Sum_probs=198.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccchhhhhhcCceEeeeeEEEEe--------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSMELERQRGITIQSAATYTLW-------------- 264 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~~~e~~~giTi~~~~~~~~~-------------- 264 (1043)
.+++++|..|+|||||+..|. .+..++|..-++ -++..+.|...|-|-..+.-.+-+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 469999999999999999886 234455543232 356667787777665433322222
Q ss_pred -------cCeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-
Q psy11896 265 -------KDHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA- 334 (1043)
Q Consensus 265 -------~~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~- 334 (1043)
..+.++|||.+||..|...+..+| .-.|.|++||.|..|....|++++..+...++|++++++|||+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 136799999999999999999988 4569999999999999999999999999999999999999999854
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCC
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 414 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~d 414 (1043)
..+.+++++.+.+...-+ ..+|.. +...|
T Consensus 320 ~~~~tv~~l~nll~~~Gc-~kvp~~--------------------------------------------------Vt~~d 348 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGC-TKVPKR--------------------------------------------------VTTKD 348 (591)
T ss_pred hHHHHHHHHHHHHhhcCc-cccceE--------------------------------------------------eechH
Confidence 245666666665542111 001100 00011
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCC
Q psy11896 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP 494 (1043)
Q Consensus 415 d~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~ 494 (1043)
|. ..+-.+ ...+.++|+|++|+.+|+|++ ||..+.+.||+-.... .+ ..+
T Consensus 349 dA----------------v~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-e~---------~~L-- 398 (591)
T KOG1143|consen 349 DA----------------VKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-ER---------IQL-- 398 (591)
T ss_pred HH----------------HHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-HH---------HHH--
Confidence 11 111112 457789999999999999995 5566666665433211 10 000
Q ss_pred CCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 495 ~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
...|.-..|-.++..|. |.+.-+-+-+|.++.|+.+.+.+.+ .+.+|..|. +.+.++..+.||+-..+
T Consensus 399 ---~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAsl 471 (591)
T KOG1143|consen 399 ---VQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASL 471 (591)
T ss_pred ---hcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceee
Confidence 23455667778888888 9999999999999999999887643 456778887 77778888999998766
Q ss_pred cc-C----ccccCcEEe
Q psy11896 570 FG-V----DCASGDTFV 581 (1043)
Q Consensus 570 ~g-l----~~~~Gdtl~ 581 (1043)
.= . .++.|.++.
T Consensus 472 sl~d~D~~~LR~GMVl~ 488 (591)
T KOG1143|consen 472 SLNDPDGVSLRRGMVLA 488 (591)
T ss_pred eccCCCccchhcceEEe
Confidence 42 1 235566665
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=184.69 Aligned_cols=182 Identities=24% Similarity=0.292 Sum_probs=130.8
Q ss_pred ccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---CchhH
Q psy11896 15 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---VQSQT 91 (1043)
Q Consensus 15 gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~---~~~~~ 91 (1043)
|+.++.++|++|..++|+++|+|++.....+.+++.+++|||||||.+|...+..+++.+|++++|+|++++ ...++
T Consensus 50 g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t 129 (426)
T TIGR00483 50 GKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT 129 (426)
T ss_pred CCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch
Confidence 444455678899999999999999999999999999999999999999999999999999999999999987 55566
Q ss_pred HHHHHHHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 92 LTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 92 ~~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+++..+...+. |+++++||+|+.+.+.++ .+.+.+.+..+++..++. ....+++++||++|.|++++...+.|
T Consensus 130 ~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~-~~~~~~ei~~~~~~~g~~----~~~~~~i~iSA~~g~ni~~~~~~~~w 204 (426)
T TIGR00483 130 REHAFLARTLGINQLIVAINKMDSVNYDEEE-FEAIKKEVSNLIKKVGYN----PDTVPFIPISAWNGDNVIKKSENTPW 204 (426)
T ss_pred HHHHHHHHHcCCCeEEEEEEChhccCccHHH-HHHHHHHHHHHHHHcCCC----cccceEEEeeccccccccccccCCcc
Confidence 666555555564 588999999997544322 223333333333222211 12357899999999999998888888
Q ss_pred hccc-cccccccccccccc-cccCCCCccceee
Q psy11896 171 YTGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 171 ~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
|.++ +.+.+.....+... ..+.+++.+++.+
T Consensus 205 ~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~ 237 (426)
T TIGR00483 205 YKGKTLLEALDALEPPEKPTDKPLRIPIQDVYS 237 (426)
T ss_pred ccchHHHHHHhcCCCCCCccCCCcEEEEEEEEe
Confidence 8776 55665543333221 2244555555544
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=186.15 Aligned_cols=156 Identities=36% Similarity=0.473 Sum_probs=129.1
Q ss_pred ceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~~~ 64 (1043)
+.|+ |..++||||.. .++++|+.++|+++|+|++.....+.|. +++++|||||||.+|.
T Consensus 10 i~Ii-Ghvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 10 FSII-AHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 4455 89999998871 3467899999999999999988877774 5789999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++++.++...+..+...++|+++|+||+|+...+.....+++.+.++
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg------------- 155 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG------------- 155 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC-------------
Confidence 9999999999999999999999999988888887778999999999999976555544455544321
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.....++++||++|.|+++|++.+...+++
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 112357899999999999999999877653
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=157.67 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=116.9
Q ss_pred eeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 7 IIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.+.|..++||+|...+.+ .+.++.+..+++|++..+..+.+. +.++.+|||||+.+|...+..+++.+|++++|+|
T Consensus 4 ~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d 83 (164)
T cd04171 4 GTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA 83 (164)
T ss_pred EEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence 444999999999977665 467778888999999988888876 7899999999999998888889999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
++++...+....+..+...+. |+++++||+|+.... .....+.+.+.+. . ......+++++||++|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 84 ADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA----G------TFLADAPIFPVSAVTGEG 153 (164)
T ss_pred CCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH----h------cCcCCCcEEEEeCCCCcC
Confidence 988766666666555555565 999999999997532 1122333333321 1 001224679999999999
Q ss_pred cchHHHHHH
Q psy11896 161 KTTLTERIL 169 (1043)
Q Consensus 161 i~~L~~~l~ 169 (1043)
++++++.+.
T Consensus 154 v~~l~~~l~ 162 (164)
T cd04171 154 IEELKEYLD 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=186.67 Aligned_cols=163 Identities=31% Similarity=0.370 Sum_probs=134.1
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.|+ |..++||||.. -.+++|+.++|+++|+|+......+.|++++++|||||||.+|..++.
T Consensus 4 IaIi-GHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 4 IAII-AHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEE-cCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 3455 88888888761 235689999999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
.+++.+|++++|+|+.+++..++..++..+...++|+|+|+||+|+.+....+..+++...+... +.. ......
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----g~~--~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----GAD--DEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh----ccc--cccccC
Confidence 99999999999999999999999999999999999999999999998766666666666554321 111 111124
Q ss_pred eeeeeeecccC----------CcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDS----------GKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~----------Gi~~L~~~l~~~l~~ 174 (1043)
+++++||++|. |++.|++.+.++++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 68999999996 788999999887764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-16 Score=185.85 Aligned_cols=156 Identities=36% Similarity=0.480 Sum_probs=127.5
Q ss_pred ceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec--C---eeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK--D---HNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~---~~i~liDTPG~~~~~ 64 (1043)
+.|+ |..++||||.. .++++|+.++|+++|+|++.....+.|. + ++++|||||||.+|.
T Consensus 6 i~II-Gh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 6 FSII-AHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 4455 99999998871 2457789999999999999888777663 2 689999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+.+.+.....+++.+.++
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg------------- 151 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG------------- 151 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC-------------
Confidence 9999999999999999999999998888877777778899999999999976555444455544332
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...+++
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 122357899999999999999999877653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=163.63 Aligned_cols=164 Identities=40% Similarity=0.511 Sum_probs=135.4
Q ss_pred eecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHh
Q psy11896 10 IKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 10 ~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
|..++||+|.. .++.+|+.++|+++|+|+......+.+++.++++|||||+.+|...+..++
T Consensus 6 G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l 85 (237)
T cd04168 6 AHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSL 85 (237)
T ss_pred cCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHH
Confidence 77888887661 236678999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccC----------
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSE---------- 141 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~---------- 141 (1043)
+.+|++++|+|++++...++..+++.+...++|+++++||+|+...+..+.++++++.++...-..+++.
T Consensus 86 ~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 165 (237)
T cd04168 86 SVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNE 165 (237)
T ss_pred HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeee
Confidence 9999999999999999999999999998899999999999999888888888898887754221111000
Q ss_pred ----------------------C----------------CCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 142 ----------------------H----------------KPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 142 ----------------------~----------------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. ..-.+.|++.-||.++.|++.|++.+..++|
T Consensus 166 ~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 166 IDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred ccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 0123456677799999999999999988876
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=186.66 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=128.1
Q ss_pred eeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 6 KIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.++ |...+||||...+.. +|.+++|+++|+|++..+..+.+++..++|||||||.+|...+..++.++|++++|+|
T Consensus 4 ~ii-G~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVD 82 (581)
T TIGR00475 4 ATA-GHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVD 82 (581)
T ss_pred EEE-CCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEE
Confidence 344 899999999966665 5888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+++++..++.+++..+...++| +++|+||+|+.+.+.. ...+++.+.+ ...++ ....+++++||++|.|
T Consensus 83 a~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l----~~~~~-----~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 83 ADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL----NSYIF-----LKNAKIFKTSAKTGQG 153 (581)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH----HHhCC-----CCCCcEEEEeCCCCCC
Confidence 9999999999988888888999 9999999999753211 1122333222 11111 0135789999999999
Q ss_pred cchHHHHHHhhccc
Q psy11896 161 KTTLTERILFYTGR 174 (1043)
Q Consensus 161 i~~L~~~l~~~l~~ 174 (1043)
++++++.+...+..
T Consensus 154 I~eL~~~L~~l~~~ 167 (581)
T TIGR00475 154 IGELKKELKNLLES 167 (581)
T ss_pred chhHHHHHHHHHHh
Confidence 99999988776654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=170.50 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=88.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|++|+|||||+++|+.....+ .....++|.......+.+++.+++||||||
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i--------------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG 109 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI--------------------VTPKVQTTRSIITGIITLKDTQVILYDTPG 109 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee--------------------ccCCCCCccCcEEEEEEeCCeEEEEEECCC
Confidence 345689999999999999999997432111 122445666555556778899999999999
Q ss_pred CCCchH--------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDFTV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~--------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
..+... ....+++.+|++++|+|+.++.......++..+...+.|.++|+||+|+.
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 854321 22345789999999999998888777777777777788999999999985
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=165.52 Aligned_cols=111 Identities=21% Similarity=0.147 Sum_probs=82.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
.|+++|++|+|||||+|+|+.....+ .....++|..........++.++.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--------------------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--------------------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--------------------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999998542111 1124455555444444456778999999997653
Q ss_pred --------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 --------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 --------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...+..+++.+|++++|+|+..+.... ..++..+...+.|+++|+||+|+.
T Consensus 62 ~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 62 KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 122456778999999999999876554 556666777889999999999986
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-16 Score=137.28 Aligned_cols=81 Identities=28% Similarity=0.481 Sum_probs=77.2
Q ss_pred CCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 500 HPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 500 ~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+||+++|||+.+|++ |+++|+|||||+|++||.|++.. +.++++.+||.++|.+..+++++.||||+++.|+ ++.+|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcCc
Confidence 699999999999999 99999999999999999999887 6678999999999999999999999999999999 88999
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
|||+
T Consensus 81 dtl~ 84 (85)
T cd03690 81 DVLG 84 (85)
T ss_pred cccC
Confidence 9986
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=158.66 Aligned_cols=154 Identities=33% Similarity=0.406 Sum_probs=117.8
Q ss_pred cceeeeeecccccccCCcccc----------------CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAV----------------MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~----------------~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
++.++ |..++||+|...+.+ .|..+.|.+.|+|+......+.+++.++++|||||+.+|...+
T Consensus 4 ~i~iv-G~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 4 NIAII-AHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 45555 999999999844333 3445668889999999988899999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
..+++.+|++++|+|++++...+...++..+...++|+++|+||+|+.........+++.+.+... ........
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIEL------GATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHh------CCccccCc
Confidence 999999999999999998777777666676667789999999999997655544455555443211 00011112
Q ss_pred eeeeeeeecccCCcchH
Q psy11896 148 IRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L 164 (1043)
.+++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 47799999999998655
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=165.00 Aligned_cols=125 Identities=62% Similarity=0.894 Sum_probs=111.1
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|+.++|+++|+|++.....++|++++++||||||+.+|...+..+++.+|++|+|+|+..++..++..+++.+...
T Consensus 36 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~ 115 (270)
T cd01886 36 GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY 115 (270)
T ss_pred ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++|+++++||+|+.+.+.++.++++++.++ ...+..++|+|+..+
T Consensus 116 ~~p~ivviNK~D~~~a~~~~~~~~l~~~l~------------~~~~~~~~Pisa~~~ 160 (270)
T cd01886 116 NVPRIAFVNKMDRTGADFFRVVEQIREKLG------------ANPVPLQLPIGEEDD 160 (270)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHhC------------CCceEEEeccccCCC
Confidence 999999999999987777777788877653 123455788988744
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=171.11 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=127.0
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+.+..... ...++++|++...+.+.+++.++.||||||+.+ +...+..+++.
T Consensus 53 ~kV~iv-G~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~ 131 (339)
T PRK15494 53 VSVCII-GRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS 131 (339)
T ss_pred eEEEEE-cCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh
Confidence 367777 99999999998777766543 356889999998888899999999999999853 33334556889
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|+++++...+..++..+...+.|.++|+||+|+.+... ..+.+.+.. ...+..++++
T Consensus 132 aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~----~~~~~~l~~-----------~~~~~~i~~i 196 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYL----NDIKAFLTE-----------NHPDSLLFPI 196 (339)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccH----HHHHHHHHh-----------cCCCcEEEEE
Confidence 9999999999887777766677777777889999999999865322 222222210 1123568999
Q ss_pred eecccCCcchHHHHHHhhcccccccccccccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWI 185 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~ 185 (1043)
||++|.|+++|++.+...+++-+-+++.+...
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 99999999999999999998766555555443
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=181.41 Aligned_cols=165 Identities=33% Similarity=0.402 Sum_probs=137.3
Q ss_pred ccceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
.++.|+ |..++||||.. ..+++|+.++|+++|+|+......+.|+++++++||||||.+|...
T Consensus 6 RnIaIi-Gh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 6 RNIAII-AHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 456677 99999999871 1356788999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+..+++.+|++|+|+|+.+++..++..++..+...++|.++++||+|+.++...+.++++.+.+... +.. ....
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l----~~~--~~~~ 158 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL----DAT--DEQL 158 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc----Ccc--cccc
Confidence 9999999999999999999999999999999888999999999999998777777777777665321 111 1112
Q ss_pred ceeeeeeeecccC----------CcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDS----------GKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~----------Gi~~L~~~l~~~l~~ 174 (1043)
..+++++||++|. |+..|++.+.+++++
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 2578999999998 577888888877763
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=151.32 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=103.4
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
+..++..+|++++|+|++++....+..+.+.+... ++|+++|+||+|+... +.. ..+...+. . .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~-~~~~~~~~---------~--~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVT-ARWVKILS---------K--E 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHH-HHHHHHHh---------c--C
Confidence 45688999999999999987666666666666543 4899999999999642 221 22222221 0 1
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
..+ .++++||+++.|+++|++.+..++.. . +...-.+|+++|.+|+|||||+|+|+....
T Consensus 68 ~~~-~~~~iSa~~~~~~~~L~~~l~~~~~~-------~------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 68 YPT-IAFHASINNPFGKGSLIQLLRQFSKL-------H------------SDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred CcE-EEEEeeccccccHHHHHHHHHHHHhh-------h------------ccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 112 25889999999999999998765431 0 001125799999999999999999974322
Q ss_pred CceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 225 RISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 225 ~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.. .....|+|.......+ +..+.|+||||.
T Consensus 128 ~~--------------------~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 128 CK--------------------VAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ee--------------------eCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 11 1234566765544332 345889999993
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=182.22 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=124.5
Q ss_pred eecccccccCCcccc---CCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 10 IKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
|...+||||...+.+ +|.+++|+++|+|++..+..+.. ++..+.|||||||.+|...+..++..+|++++|+|+++
T Consensus 7 GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD 86 (614)
T ss_pred CCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 888899999866655 68899999999999998877765 45679999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcch
Q psy11896 86 GVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTT 163 (1043)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~ 163 (1043)
++..++.+++..+...++| +++|+||+|+.+.+ .+...+++.+.+. . ......+++++||++|.|+++
T Consensus 87 g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~----~------~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 87 GVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR----E------YGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH----h------cCCCCCcEEEEeCCCCCCCHH
Confidence 9999999999988888888 57999999997422 1222333333221 1 112235789999999999999
Q ss_pred HHHHHHhhccc
Q psy11896 164 LTERILFYTGR 174 (1043)
Q Consensus 164 L~~~l~~~l~~ 174 (1043)
|++.+..+..+
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999876543
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=149.65 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=89.1
Q ss_pred EEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH
Q psy11896 203 GISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 282 (1043)
Q Consensus 203 ~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~ 282 (1043)
+++|++|+|||||+++|+...... .+...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI--------------------VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe--------------------ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 479999999999999997431110 112345666666677778889999999999988654
Q ss_pred --------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 283 --------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 283 --------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+....++.+|++++|+|+.++.......+++++...+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 61 GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 455678899999999999988888888888888888999999999999864
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=185.87 Aligned_cols=176 Identities=24% Similarity=0.314 Sum_probs=129.2
Q ss_pred ccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH
Q psy11896 17 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 96 (1043)
Q Consensus 17 ~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~ 96 (1043)
.++.++|++|..++|+++|+|++.....+++++.+++|+|||||.+|...+..++..+|++++|+|+..++..++.+++.
T Consensus 71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~ 150 (632)
T PRK05506 71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF 150 (632)
T ss_pred CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-
Q psy11896 97 QMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR- 174 (1043)
Q Consensus 97 ~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~- 174 (1043)
.+...++ |+++++||+|+.+.+.+ .++.+...+..++...+ +...+++|+||++|.|++++.+.+.||.++
T Consensus 151 ~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i~~~i~~~~~~~~------~~~~~iipiSA~~g~ni~~~~~~~~wy~g~t 223 (632)
T PRK05506 151 IASLLGIRHVVLAVNKMDLVDYDQE-VFDEIVADYRAFAAKLG------LHDVTFIPISALKGDNVVTRSARMPWYEGPS 223 (632)
T ss_pred HHHHhCCCeEEEEEEecccccchhH-HHHHHHHHHHHHHHHcC------CCCccEEEEecccCCCccccccCCCcccHhH
Confidence 8877775 58899999999753332 23333333322222211 223468999999999999877766777665
Q ss_pred ccccccccccccc-ccccCCCCccce
Q psy11896 175 ISEMHETSRWISN-ESLSEHKPIEYI 199 (1043)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~~~~~~~i 199 (1043)
+.+.++....+.. ...+.+++.+.+
T Consensus 224 L~~~l~~~~~~~~~~~~p~r~~i~~v 249 (632)
T PRK05506 224 LLEHLETVEIASDRNLKDFRFPVQYV 249 (632)
T ss_pred HHHHHhcCCCCCCcCCCCceeeEEEE
Confidence 4444443332221 223444555444
|
|
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=133.85 Aligned_cols=80 Identities=38% Similarity=0.680 Sum_probs=76.6
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
|+++|||+++|++ |+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+ ++.+|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 5799999999998 9999999999999999999999888889999999999999999999999999999999 8899999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 97
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=150.09 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=81.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++|+.|+|||||+++|....... .+ . .......|+......+.+++..+.+|||||+.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~--------~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KG--------L--PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cC--------C--cccccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 68999999999999999997432110 00 0 0012233444445567778899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+.+.-.. .....+..+. ..++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 99888899999999999999864211 1222222222 35789999999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=161.65 Aligned_cols=169 Identities=20% Similarity=0.181 Sum_probs=114.1
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...++.+|++++|+|++.+.......+.+.+ .++|+++|+||+|+... .. .....+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~-~~~~~~~~~~--- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AV-TKQWLKYFEE--- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HH-HHHHHHHHHH---
Confidence 48887 4778889999999999999999987776666665554 36899999999999632 11 1222222110
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
...+++++||+++.|+++|.+.+.+.++...+...... ...+..+++++|.+|+|||||
T Consensus 76 ----------~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~vG~~nvGKSsl 134 (276)
T TIGR03596 76 ----------KGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKG-----------LKNRPIRAMIVGIPNVGKSTL 134 (276)
T ss_pred ----------cCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhcc-----------CCCCCeEEEEECCCCCCHHHH
Confidence 01357889999999999999999877654221111110 011246799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+|+|+...... ....+|+|.......+ +..+.++||||.
T Consensus 135 in~l~~~~~~~--------------------~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 135 INRLAGKKVAK--------------------VGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred HHHHhCCCccc--------------------cCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 99997432110 1224566766554333 246899999997
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=148.51 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=121.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||++++ ||+++||+=..+++..|+++++....+.+|.....+++.+. ++.+|||+|+++|...+..++++|++||+
T Consensus 9 lFKiili-Gds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 9 LFKIILI-GDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred EEEEEEE-CCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 5899999 99999999999999999999999999999999888888765 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHH-HHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNRQ-MKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~-l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|.++.-+......|.. +.+ .++|.++|.||+|+.....-. .+..+.+. ..... ...+.+||
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~--~~~a~~fa---------~~~~~--~~f~ETSA 154 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS--TEEAQEFA---------DELGI--PIFLETSA 154 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--HHHHHHHH---------HhcCC--cceeeccc
Confidence 999997554444433322 222 367999999999986532111 11111121 00111 22578999
Q ss_pred cccCCcchHHHHHHhhcc
Q psy11896 156 HIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.|+++.+..++..+-
T Consensus 155 K~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELK 172 (205)
T ss_pred CCccCHHHHHHHHHHHHH
Confidence 999999999998876553
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=164.25 Aligned_cols=170 Identities=21% Similarity=0.194 Sum_probs=116.4
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC------------------eeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------------HNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~------------------~~i~liDTPG~~~~~~~ 66 (1043)
++.+.|...+||||...+............|+|.+.....+.+.. ..+.|||||||.+|...
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 345559999999998666555554444444577766555443321 13899999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-C--------------HHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-D--------------PYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~--------------~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++++|+|++++...++.+.+..+...++|+++++||+|+... . .......+.+.+.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~ 165 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVY 165 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998888888889999999999998631 1 0001111111111
Q ss_pred h---ccccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 132 R---WISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 132 ~---~~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. .+...++... ......+++|+||++|+|+++|.+.+......
T Consensus 166 ~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 166 NLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 1 1111122111 11234678999999999999999988765443
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=146.83 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .+..+++|.......+.+++..+.+|||||+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--------------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--------------------ccCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 3579999999999999999997432111 11234556655555667788889999999976
Q ss_pred Cch-----------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 279 DFT-----------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~-----------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred cccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 542 12344668999999999999988888888888888889999999999998753
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=131.14 Aligned_cols=80 Identities=78% Similarity=1.242 Sum_probs=76.7
Q ss_pred cEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEe
Q psy11896 502 FIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFV 581 (1043)
Q Consensus 502 ~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~ 581 (1043)
|+++|||+.+|++|+++|+|||||+|++||.|++.+.++++++.+|+.++|.+..+++++.||||+++.|+++.+||||+
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~~~~Gdtl~ 80 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGIDCASGDTFT 80 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCCcccCCEec
Confidence 57999999999889999999999999999999999888889999999999999999999999999999999988999996
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=161.84 Aligned_cols=163 Identities=15% Similarity=0.033 Sum_probs=121.0
Q ss_pred cceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~a 74 (1043)
++.++ |.+++||+|...+.+.++. .....|+||++...+....++.++.||||||+.+ +...+..+++.+
T Consensus 2 ~V~li-G~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAIL-GRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 46677 9999999999777776654 3567899999988777777788999999999864 233466788999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|++++|+|++...... ..++..+...++|+++|+||+|+.. .....+.+..... ...+.+++++|
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~------------~~~~~~v~~iS 145 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI------------LEDFKDIVPIS 145 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh------------hcCCCceEEEe
Confidence 9999999999765443 5556667778899999999999863 2223232222110 01234789999
Q ss_pred ecccCCcchHHHHHHhhccccccccccc
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMHETS 182 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~~~~ 182 (1043)
|++|.|+++|++.+...+++-+..++.+
T Consensus 146 A~~g~gi~~L~~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPEGPFRYPED 173 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCc
Confidence 9999999999999999887654444443
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-15 Score=149.95 Aligned_cols=160 Identities=28% Similarity=0.273 Sum_probs=123.3
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
+.++ |..++||+|...+...+.......+++|.+.....+.+. +..+.+|||||+..+...+..++..+|++++|+
T Consensus 3 i~ii-G~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 3 VTVM-GHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEE-ecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4455 999999999988877777777777888988877777764 678999999999998888888999999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|++++...++...+..+...++|+++|+||+|+...........+....... . ... ....+++++||++|.|+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~-~~~-~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQG-----E-DEW-GGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccc-----c-ccc-cCcCcEEEeecccCCCH
Confidence 9998777777777777778899999999999987544443333333221000 0 001 12346899999999999
Q ss_pred chHHHHHHhhc
Q psy11896 162 TTLTERILFYT 172 (1043)
Q Consensus 162 ~~L~~~l~~~l 172 (1043)
++|++.+.+..
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T cd01887 155 DDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=154.41 Aligned_cols=167 Identities=17% Similarity=0.046 Sum_probs=109.1
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhcccccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLS 140 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~ 140 (1043)
.|...+..+++.+|++++|+|+++........+.. ...++|+++|+||+|+..... ......+.+.+. ..
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~----- 93 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA--AA----- 93 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH--Hh-----
Confidence 36788888999999999999998755444444422 235789999999999864321 111122210000 00
Q ss_pred CCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 141 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 141 ~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.....+.+++++||++|.|+++|++.+...++ .-.+++++|.+|+|||||+|+|+
T Consensus 94 -~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~------------------------~~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 94 -GLGLKPKDVILISAKKGWGVEELINAIKKLAK------------------------KGGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred -hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh------------------------cCCcEEEEcCCCCCHHHHHHHHH
Confidence 01122235789999999999999999987653 11469999999999999999998
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
........ .. ........+|+|.......+. ..+.++||||.
T Consensus 149 ~~~~~~~~----~~--------~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 149 KKDNGKKK----LK--------DLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred Hhcccccc----cc--------cccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 54321110 00 001123456888887766553 25799999994
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=170.41 Aligned_cols=162 Identities=23% Similarity=0.261 Sum_probs=122.9
Q ss_pred ceeeeeecccccccC----------------CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKD----------------NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~----------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++. ...+.+|..++|+++|+|++.....+++++.+++|||||||.+|...+.
T Consensus 15 i~i~-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 93 (394)
T PRK12736 15 IGTI-GHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI 93 (394)
T ss_pred EEEE-ccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHH
Confidence 4455 7777777765 1123689999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++.++...++| +|+++||+|+.+. ++..+.+.+.+..++...++. ...
T Consensus 94 ~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~----~~~ 167 (394)
T PRK12736 94 TGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEMEVRELLSEYDFP----GDD 167 (394)
T ss_pred HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHHHHHHHHHHhCCC----cCC
Confidence 999999999999999999999999999999999999 6789999998642 223333333333333322221 123
Q ss_pred eeeeeeeecccC--------CcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDS--------GKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~--------Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|. ++++|++.+...++
T Consensus 168 ~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 168 IPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred ccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 578999999983 45666666655543
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-15 Score=155.18 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=118.2
Q ss_pred eeeeeecccccccCC---ccccCCChhhhhhcCCccccceEEEEec---------------------------C------
Q psy11896 6 KIIHIKQEQVRGKDN---VGAVMDSMELERQRGITIQSAATYTLWK---------------------------D------ 49 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~---~~~~~d~~~~e~~~G~T~~~~~~~~~~~---------------------------~------ 49 (1043)
-++ |-.+.||++.. ..+..|..+.|.++|.|+......+.|. +
T Consensus 4 ~~~-g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T cd01888 4 GTI-GHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLV 82 (203)
T ss_pred EEE-CCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccc
Confidence 355 88999999983 2333788999999999998887666553 3
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-CchhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQM 126 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l 126 (1043)
.+++||||||+.+|...+..++..+|++++|+|++++ ...++...+..+...++ |+++|+||+|+.+.. ....++.+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999974 55666667666665665 689999999997522 22223344
Q ss_pred HHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 127 RQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++.+.. +.....+++++||++|.|+++|++.+...++
T Consensus 163 ~~~~~~----------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 163 KKFVKG----------TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHhc----------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 333211 1112346899999999999999999987665
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=172.06 Aligned_cols=150 Identities=24% Similarity=0.308 Sum_probs=120.9
Q ss_pred ceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++..-+ ..+|..++|+++|+|++.....+++++.+++|||||||.+|...+.
T Consensus 84 i~ii-Ghvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 162 (478)
T PLN03126 84 IGTI-GHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 162 (478)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHH
Confidence 4556 8888888887322 3478899999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+.+++..++.+++..+...++| +|+++||+|+.+ .++..+.+.+.+..++...++.. ..
T Consensus 163 ~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--~~~~~~~i~~~i~~~l~~~g~~~----~~ 236 (478)
T PLN03126 163 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLELVELEVRELLSSYEFPG----DD 236 (478)
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC--HHHHHHHHHHHHHHHHHhcCCCc----Cc
Confidence 999999999999999999999999999999999999 778999999975 23334444444444444433321 24
Q ss_pred eeeeeeeecccCCc
Q psy11896 148 IRNIGISAHIDSGK 161 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi 161 (1043)
.+++|+||.+|.++
T Consensus 237 ~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 237 IPIISGSALLALEA 250 (478)
T ss_pred ceEEEEEccccccc
Confidence 57899999998643
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-15 Score=145.53 Aligned_cols=158 Identities=16% Similarity=0.073 Sum_probs=113.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|++++ |++++||+|+.++++.|.|.+-.+|.+.--..+..+..++ .+|.||||+|+++|.+....|+|+|+++|+
T Consensus 5 ~~KvvLL-G~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 5 EFKVVLL-GDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred eEEEEEE-CCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 4788888 9999999999999999999986666555555555555555 688899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHhcCCC---EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKRYDVP---CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~~~~p---iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|+++.-+.+....| ..+....-| +.+|.||+||...... ..++.... .....+ .++.+||
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~~~ea~~y----------Ae~~gl---l~~ETSA 149 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV-EFEEAQAY----------AESQGL---LFFETSA 149 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc-cHHHHHHH----------HHhcCC---EEEEEec
Confidence 9999965444443332 223332224 5579999999752111 11111111 111122 3467999
Q ss_pred cccCCcchHHHHHHhhccc
Q psy11896 156 HIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++|.|+++++..|...+++
T Consensus 150 KTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ccccCHHHHHHHHHHhccC
Confidence 9999999999999988775
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=171.46 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=95.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
+|+++|++|+|||||+|+|+.....+ .+...|+|.+.......|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--------------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~ 60 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--------------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED 60 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--------------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCc
Confidence 48999999999999999997432211 223568888888888899999999999999843
Q ss_pred -------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 -------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 -------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+..+++.+|++++|+|+..|.......+++.+.+.++|+++|+||+|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 61 DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 344567788999999999999999999999999999889999999999999763
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=146.73 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=99.7
Q ss_pred CEEEEEEeCCCCCchhHHHHH-HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVN-RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~-~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++++.......+. ..+...++|+++|+||+|+... +...+.+ ..+. ......++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~-~~~~------------~~~~~~ii~v 65 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWL-AYLR------------HSYPTIPFKI 65 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHH-HHHH------------hhCCceEEEE
Confidence 789999999877666655554 4556678999999999999642 2111111 1110 0112467899
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|.+.+.+...+..+..... .......+++++|++|+|||||+|+|+......
T Consensus 66 Sa~~~~gi~~L~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~------- 127 (155)
T cd01849 66 SATNGQGIEKKESAFTKQTNSNLKSYAKD-----------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLK------- 127 (155)
T ss_pred eccCCcChhhHHHHHHHHhHHHHHHHHhc-----------cccccCcEEEEEccCCCCHHHHHHHHHcccccc-------
Confidence 99999999999998876543211000000 001134679999999999999999998432211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+..+|+|.......+ +..++++||||.
T Consensus 128 -------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 128 -------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred -------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 2234567776655443 356999999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=145.34 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+...++.+|++|+|+|++++...++..+...+...++|+++|+||+|+.... .. ..+.....
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~-~~~~~~~~------------- 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE--VL-EKWKSIKE------------- 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH--HH-HHHHHHHH-------------
Confidence 445667778999999999987766666666666666789999999999986421 11 11111100
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
....+++++||+++.|+++|++.+...++. .....+++++|.+|+|||||+++|.....
T Consensus 68 ~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~---------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 68 SEGIPVVYVSAKERLGTKILRRTIKELAKI---------------------DGKEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred hCCCcEEEEEccccccHHHHHHHHHHHHhh---------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 011357899999999999999999877641 11235689999999999999999973211
Q ss_pred CceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 225 RISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 225 ~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
. ......|+|...... ..+..+.+|||||.
T Consensus 127 ~--------------------~~~~~~~~t~~~~~~---~~~~~~~~~DtpGi 156 (156)
T cd01859 127 A--------------------STSPSPGYTKGEQLV---KITSKIYLLDTPGV 156 (156)
T ss_pred c--------------------ccCCCCCeeeeeEEE---EcCCCEEEEECcCC
Confidence 0 011233445443222 12447999999993
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=129.85 Aligned_cols=78 Identities=29% Similarity=0.550 Sum_probs=74.6
Q ss_pred EEEEeeee---cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCc
Q psy11896 504 ALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGD 578 (1043)
Q Consensus 504 ~~V~K~~~---d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 578 (1043)
++|||+.+ +++ |+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+ ++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 57999999 998 9999999999999999999999888789999999999999999999999999999999 789999
Q ss_pred EEe
Q psy11896 579 TFV 581 (1043)
Q Consensus 579 tl~ 581 (1043)
||+
T Consensus 81 tl~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred Eee
Confidence 998
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-15 Score=170.58 Aligned_cols=150 Identities=24% Similarity=0.293 Sum_probs=119.5
Q ss_pred ceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-..+||+|..- ...+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~i~-Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~ 93 (409)
T CHL00071 15 IGTI-GHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI 93 (409)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHH
Confidence 4455 778888876611 13578999999999999999988888899999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++| +|+++||+|+.+. ++..+.+.+.+..++...++.. ..
T Consensus 94 ~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~~l~~~l~~~~~~~----~~ 167 (409)
T CHL00071 94 TGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVELEVRELLSKYDFPG----DD 167 (409)
T ss_pred HHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHHHHHHHHHHhCCCC----Cc
Confidence 999999999999999999999999999999999999 7789999999742 3334444444444444333221 23
Q ss_pred eeeeeeeecccCCc
Q psy11896 148 IRNIGISAHIDSGK 161 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi 161 (1043)
.+++++||.+|.++
T Consensus 168 ~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 168 IPIVSGSALLALEA 181 (409)
T ss_pred ceEEEcchhhcccc
Confidence 57899999999764
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=169.87 Aligned_cols=162 Identities=23% Similarity=0.250 Sum_probs=120.6
Q ss_pred ceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||+|..-+ ..+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 64 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 142 (447)
T PLN03127 64 VGTI-GHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 142 (447)
T ss_pred EEEE-CcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHH
Confidence 4455 7777777776321 1589999999999999999999999899999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
..+..+|++++|+|+.+++..++.+++..+...++| +|+++||+|+.+ .++..+.+.+.+..++...++. ...
T Consensus 143 ~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~--~~~~~~~i~~~i~~~l~~~~~~----~~~ 216 (447)
T PLN03127 143 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD--DEELLELVEMELRELLSFYKFP----GDE 216 (447)
T ss_pred HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC--HHHHHHHHHHHHHHHHHHhCCC----CCc
Confidence 999999999999999999999999999999999999 578999999974 2223333333333322221111 123
Q ss_pred eeeeeeeec---ccCC-------cchHHHHHHhhcc
Q psy11896 148 IRNIGISAH---IDSG-------KTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~---~g~G-------i~~L~~~l~~~l~ 173 (1043)
.+++++||. +|.| +..|++.+..+++
T Consensus 217 vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 217 IPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred ceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 466777775 5555 4566666665543
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=148.01 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=112.0
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...++.||++++|+|++.+....+..+...+ .++|.++|+||+|+... .. .....+.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~-~~~~~~~~~---- 72 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KK-TKKWLKYFE---- 72 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HH-HHHHHHHHH----
Confidence 47875 5778889999999999999999876655555444433 36899999999999632 11 111212111
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
....+++.+||+++.|+++|.+.+..+++... +.... .......+++++|.+|+|||||
T Consensus 73 ---------~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~------~~~~~------~~~~~~~~~~~~G~~~vGKstl 131 (171)
T cd01856 73 ---------SKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIE------KLKAK------GLLPRGIRAMVVGIPNVGKSTL 131 (171)
T ss_pred ---------hcCCeEEEEECCCcccHHHHHHHHHHHHHHHh------hhhhc------ccCCCCeEEEEECCCCCCHHHH
Confidence 01135789999999999999999988764311 00000 0111235799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+++|+..... ......|+|.......+. ..+.++||||.
T Consensus 132 in~l~~~~~~--------------------~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 132 INRLRGKKVA--------------------KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred HHHHhCCCce--------------------eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 9999843221 012234566665554442 56899999995
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=169.79 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=94.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.++|+|+|.+|+|||||+++|+..... ..+...|+|.+.......|++..+.+|||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~--------------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA--------------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc--------------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 478999999999999999999743211 123366888888778888999999999999976
Q ss_pred C--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. +...+..+++.+|++|+|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 98 PDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred CcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 3 334456688999999999999999888777788888888999999999999753
|
|
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=129.41 Aligned_cols=80 Identities=48% Similarity=0.799 Sum_probs=76.4
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
++++|||+.+|++ |+++|+|||+|+|++||.|++.++++++++.+|+.++|.+..++++++||||+++.|+ ++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 5789999999997 9999999999999999999999888889999999999999999999999999999999 7899999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 81 l~ 82 (83)
T cd04088 81 LC 82 (83)
T ss_pred ee
Confidence 96
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=143.65 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=80.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
..++|+++|+.|+|||||++++.... .. .+....++.+.....+.+++ ..+++||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FS-------------------ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Cc-------------------ccCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 35899999999999999999996321 10 00011112222333455555 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 333 (1043)
|+.+|.......++.+|++++|+|+.+....+....|.. .. ..++|+++|+||+|+..
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 999998888888999999999999998654444333422 22 24689999999999863
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=167.37 Aligned_cols=149 Identities=23% Similarity=0.257 Sum_probs=115.0
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 93 (396)
T PRK12735 15 VGTI-GHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMI 93 (396)
T ss_pred EEEE-CcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHH
Confidence 4455 77788887771 224789999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+.+++..++.+++..+...++|.+ +++||+|+.+. ++..+.+...+..++...++. ...
T Consensus 94 ~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~ei~~~l~~~~~~----~~~ 167 (396)
T PRK12735 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSKYDFP----GDD 167 (396)
T ss_pred hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHHHHHHHHHHcCCC----cCc
Confidence 99999999999999999999999999998888899965 67999999642 222333333333333322221 123
Q ss_pred eeeeeeeecccCC
Q psy11896 148 IRNIGISAHIDSG 160 (1043)
Q Consensus 148 ~~ii~iSa~~g~G 160 (1043)
.+++++||++|.+
T Consensus 168 ~~ii~~Sa~~g~n 180 (396)
T PRK12735 168 TPIIRGSALKALE 180 (396)
T ss_pred eeEEecchhcccc
Confidence 5789999999964
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=152.08 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=120.2
Q ss_pred cceeeeeecccccccCCccc--------------cCCChhhhhhcCCccccce------------------------EEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGA--------------VMDSMELERQRGITIQSAA------------------------TYT 45 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~--------------~~d~~~~e~~~G~T~~~~~------------------------~~~ 45 (1043)
|+.++ |+.++||+|...++ .+++.+.|.++|.|..... ..+
T Consensus 1 ~v~~~-G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVV-GNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 45667 99999999984433 3456678888898874333 223
Q ss_pred EecCeeEEEEeCCCCcchHHHHHHHhh--hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHH
Q psy11896 46 LWKDHNINIIDTPGHVDFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRV 122 (1043)
Q Consensus 46 ~~~~~~i~liDTPG~~~~~~~~~~~~~--~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~ 122 (1043)
+..++.++|+|||||.+|...+..++. .+|++++|+|+..++..++..++.++...++|+++|+||+|+.+.+ ..+.
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 345678999999999999999888885 7999999999999999999999999999999999999999986432 3344
Q ss_pred HHHHHHhhhhcccccccc----------------C-CCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 123 INQMRQKTSRWISNESLS----------------E-HKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~----------------~-~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+++.+.+.. .+.. . .......+++++||.+|+|+++|.+.|..
T Consensus 160 ~~~l~~~L~~----~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 160 LKDLKRILKV----PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHhcC----CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 4445444321 0100 0 01122458899999999999999987753
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=147.95 Aligned_cols=168 Identities=33% Similarity=0.372 Sum_probs=125.0
Q ss_pred ceeeeeecccccccCCccccC----------------CChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVM----------------DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~----------------d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |..++||+|...+... +....+..+|+|.+.....+.+.+..++||||||+.++...+.
T Consensus 2 v~v~-G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 2 VGIA-GHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred EEEE-eCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 3455 9999999998444322 2334577889999988888888889999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-CCHHHHHHHHHHhhhhccccccc-cCCCCcc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKTSRWISNESL-SEHKPIE 146 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~ 146 (1043)
.+++.+|++++|+|+..+...+....+..+...++|+++|+||+|+.. .......+++++.+......... .......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999988777777777777778999999999999975 33334444444443211000000 0001123
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...++
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhhCC
Confidence 467899999999999999999987764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=167.61 Aligned_cols=149 Identities=24% Similarity=0.257 Sum_probs=115.9
Q ss_pred ceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||+|..- .+.+|+.++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~ 93 (396)
T PRK00049 15 VGTI-GHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI 93 (396)
T ss_pred EEEE-eECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHH
Confidence 4555 777888877621 12678999999999999999888888889999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++|.+ +++||+|+.+ .++..+.+...+...+...++. ...
T Consensus 94 ~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~--~~~~~~~~~~~i~~~l~~~~~~----~~~ 167 (396)
T PRK00049 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFP----GDD 167 (396)
T ss_pred hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc--hHHHHHHHHHHHHHHHHhcCCC----ccC
Confidence 99999999999999999999999999999999999976 6899999974 2223333333333333332221 123
Q ss_pred eeeeeeeecccCC
Q psy11896 148 IRNIGISAHIDSG 160 (1043)
Q Consensus 148 ~~ii~iSa~~g~G 160 (1043)
.+++++||++|.+
T Consensus 168 ~~iv~iSa~~g~~ 180 (396)
T PRK00049 168 TPIIRGSALKALE 180 (396)
T ss_pred CcEEEeecccccC
Confidence 5789999999863
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-14 Score=143.24 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
|+|+++|++|+|||||+++|+..... .+...+.|.........+++..+++|||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---------------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---------------------cCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 57999999999999999999743211 111234555555555667788999999999854
Q ss_pred chH--------HHHHHh-HhcCeEEEEEeCCCCcc---hHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 280 FTV--------EVERAL-RVLDGAILVLCAVGGVQ---SQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~--------e~~~~l-~~~D~~ilVvda~~g~~---~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
... ....++ ..+|++++|+|+.+... ......+..+... +.|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 60 RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 211 112222 34689999999986432 1222334444444 789999999999863
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=165.94 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=117.2
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|..++|+++|+|++.....++.++.+++|||||||.+|...+.
T Consensus 15 i~i~-Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~ 93 (394)
T TIGR00485 15 IGTI-GHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI 93 (394)
T ss_pred EEEE-eecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHH
Confidence 4455 77778887662 234789999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|++.++..++.+++..+...++|.+ +++||+|+.+. ++..+.+.+.+..++...++. ...
T Consensus 94 ~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i~~~l~~~~~~----~~~ 167 (394)
T TIGR00485 94 TGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSEYDFP----GDD 167 (394)
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHHHHHHHHhcCCC----ccC
Confidence 99999999999999999999999999999988999965 68999998742 222333333333333322211 122
Q ss_pred eeeeeeeecccC-CcchHH
Q psy11896 148 IRNIGISAHIDS-GKTTLT 165 (1043)
Q Consensus 148 ~~ii~iSa~~g~-Gi~~L~ 165 (1043)
.+++++||++|. |..++.
T Consensus 168 ~~ii~vSa~~g~~g~~~~~ 186 (394)
T TIGR00485 168 TPIIRGSALKALEGDAEWE 186 (394)
T ss_pred ccEEECccccccccCCchh
Confidence 578999999985 544443
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=143.09 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=76.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG~~d 279 (1043)
+|+++|++|+|||||+++|......+ ....+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v---------------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI---------------------ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc---------------------cCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 69999999999999999997432111 11233455555555666776 999999999743
Q ss_pred -------chHHHHHHhHhcCeEEEEEeCCCC-cchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 280 -------FTVEVERALRVLDGAILVLCAVGG-VQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 -------f~~e~~~~l~~~D~~ilVvda~~g-~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.....+.++.+|++++|+|+... -..+....| ..+.. .+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 61 GASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 334455566779999999999976 233333333 22222 3689999999999853
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=151.78 Aligned_cols=152 Identities=17% Similarity=0.062 Sum_probs=112.6
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
++++ |+.++||||...++..+.+..+..+.++.+.....+.+++ .++.+|||+|+.+|...+..+++++|++|+|+|
T Consensus 3 vvvl-G~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 3 VIII-GSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEE-CcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 4555 9999999999999999999888777777777666677766 578999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHH-HHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 83 AVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 83 a~~~~~~~~~~~~~-~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+++.-+.+....|. .+. ..+.|+++|+||+|+..... ....+.+.+. .....++.+||+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---------------~~~~~~~etSAk 146 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---------------ITGMRFCEASAK 146 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---------------cCCCEEEEecCC
Confidence 99755444433332 222 23689999999999864211 1111111111 001246789999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 147 tg~gV~e~F~~l~~~~ 162 (202)
T cd04120 147 DNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=159.35 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=115.2
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...+..+|++|+|+|++.+.......+...+. ++|+++|+||+|+.+. .. .+.+.+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~--~~-~~~~~~~~~---- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP--EV-TKKWIEYFE---- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH--HH-HHHHHHHHH----
Confidence 58987 46777889999999999999999877766665555443 7899999999998632 11 122222221
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
. . ..+++++||+++.|+++|.+.+...++...+...... ......+++++|.+|+|||||
T Consensus 78 ~------~---~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~-----------~~~~~~~~~~~G~pnvGKSsl 137 (287)
T PRK09563 78 E------Q---GIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKG-----------MRPRAIRAMIIGIPNVGKSTL 137 (287)
T ss_pred H------c---CCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcc-----------cCcCceEEEEECCCCCCHHHH
Confidence 0 0 1356889999999999999998877654221110000 011235799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+|+|+..... ......|+|....... + +..+.|+||||...
T Consensus 138 iN~l~~~~~~--------------------~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 138 INRLAGKKIA--------------------KTGNRPGVTKAQQWIK--L-GKGLELLDTPGILW 178 (287)
T ss_pred HHHHhcCCcc--------------------ccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCC
Confidence 9999743211 0122567777765433 2 34689999999643
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-14 Score=172.89 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=97.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....++|+|+|++|+|||||+++|+.....+ .+...|+|.+.......|++..+++||||
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i--------------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~ 331 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV--------------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTG 331 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee--------------------ecCCCCeeEEEEEEEEEECCEEEEEEeCC
Confidence 3446889999999999999999997432111 22356888888888888999999999999
Q ss_pred CCCC--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 276 GHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|+.. |...+..+++.+|++|+|+|+.+|+......++..+...++|+++|+||+|+.
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9763 44556778899999999999999998888888888888999999999999975
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=154.77 Aligned_cols=114 Identities=20% Similarity=0.208 Sum_probs=83.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
...|+++|++|+|||||+|+|+.....+ .....++|..........++.++.++||||+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--------------------vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~ 64 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--------------------VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIH 64 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--------------------cCCCCCcccccEEEEEEcCCceEEEEECCCCC
Confidence 4569999999999999999998432211 01122333333333333456799999999976
Q ss_pred Cch--------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~--------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.. ..+..++..+|++++|+|+..+.......++..+...+.|+++|+||+|+.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 532 334567789999999999999777777777777777789999999999986
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-14 Score=168.04 Aligned_cols=127 Identities=34% Similarity=0.536 Sum_probs=111.0
Q ss_pred cceeeeeecccccccCCc----------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc
Q psy11896 4 KVKIIHIKQEQVRGKDNV----------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 61 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~----------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~ 61 (1043)
.+.|+ |-.++||||..- .+.+|+++.|+++|+|+......+.++++++++||||||.
T Consensus 12 ni~Ii-Gh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 12 TFAII-SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 34455 888888887711 1347889999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+|...+..+++.+|++|+|+|+++++..++..+++.+...++|+++++||+|+...+..++++++++.++
T Consensus 91 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 91 DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998889999999999999988787777788877654
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=146.76 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=112.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |..++||+|...+...+.+..+..+..+.+.....+.+++ ..+.+|||||+.++...+...++.+|++++
T Consensus 3 ~~kv~vv-G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 3 LFKIILI-GDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4789999 9999999999888877777766666555566666666666 478999999999999989999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH---hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~---~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.+.... ...+. ..++|+++|+||+|+...... +....+.+. .....++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~~e~ 146 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK---------------NGMLAVLET 146 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH---------------cCCcEEEEE
Confidence 999987544333222 22222 246899999999998643211 111122211 112356889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 147 Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 147 SAKESQNVEEAFLLMATE 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-15 Score=147.20 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch------HHHHHHHh--hhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF------TVEVERAL--RVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~------~~~~~~~~--~~aD 75 (1043)
++.++ |.+.+||++.+.+.+..+......||+|++...+.+.+++..+.|+||||..++ ...+..++ ...|
T Consensus 2 ~ialv-G~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 2 RIALV-GNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred EEEEE-CCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 45677 999999999988888888778888999999999999999999999999997532 12234444 5799
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
++++|+|++. ..++..+..++.+.++|+++++||+|...... .-..+.+.+.++ .+++++|
T Consensus 81 ~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg----------------~pvi~~s 142 (156)
T PF02421_consen 81 LIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG----------------VPVIPVS 142 (156)
T ss_dssp EEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT----------------S-EEEEB
T ss_pred EEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC----------------CCEEEEE
Confidence 9999999984 46677788888999999999999999753211 111345555442 4789999
Q ss_pred ecccCCcchHHHHH
Q psy11896 155 AHIDSGKTTLTERI 168 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l 168 (1043)
|++++|+++|++.+
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999998865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-14 Score=142.47 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=80.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHH
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 283 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e 283 (1043)
++|++|+|||||++++..... .....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---------------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---------------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC
Confidence 579999999999999963311 01224678888877778888899999999999887642
Q ss_pred ------HHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 284 ------VERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 284 ------~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
....+. .+|++++|+|+... .+....+.++...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 60 SEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred ChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 233443 89999999999873 2333445566678999999999999864
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-14 Score=147.54 Aligned_cols=94 Identities=50% Similarity=0.658 Sum_probs=85.7
Q ss_pred cccCCChhhhhhcCCccccceEEEEec----------CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWK----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 91 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~----------~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~ 91 (1043)
.+++|+.+.|+++|+|++.....+.+. +++++|||||||.+|...+..+++.+|++++|+|+..++..++
T Consensus 35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 467899999999999999887666554 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 92 LTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 92 ~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
..+++.+...++|+++|+||+|+.
T Consensus 115 ~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 115 ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHHcCCCEEEEEECCCcc
Confidence 999998888889999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=147.88 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|+..++..+.+..+..+..+.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 6 ~~Kivvi-G~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 6 LLKFLLV-GDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4788888 9999999999998888888777777777776656666666 578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|.++..+......| ..+.. .+.|+|||.||+|+...... ..++.+.... ... .+++.+||+
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~~~~~~~~a~----------~~~---~~~~e~SAk 150 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV-ATEQAQAYAE----------RNG---MTFFEVSPL 150 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCC-CHHHHHHHHH----------HcC---CEEEEecCC
Confidence 9999875544443322 22322 36899999999998542110 0111111110 011 256789999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.++..+
T Consensus 151 ~g~~V~~~F~~l~~~i 166 (189)
T cd04121 151 CNFNITESFTELARIV 166 (189)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998644
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=155.51 Aligned_cols=149 Identities=34% Similarity=0.403 Sum_probs=123.8
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
.--.++|+...|+++|+|+-.+...+.|++++++++|||||.+|..++.+.+.-.|++++++||.+|+.+|+..+.+.+.
T Consensus 38 v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl 117 (603)
T COG1217 38 VAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKAL 117 (603)
T ss_pred hhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC----------CcchHHHHHH
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS----------GKTTLTERIL 169 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~----------Gi~~L~~~l~ 169 (1043)
+.+.+-|+|+||+|.+++.+++..++.-..|-. +......-.++++.-||+.|. ++..|++.+.
T Consensus 118 ~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~------L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~ 191 (603)
T COG1217 118 ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE------LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETIL 191 (603)
T ss_pred HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH------hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHH
Confidence 899999999999999999888777766554321 222222223477888998874 3566777777
Q ss_pred hhccc
Q psy11896 170 FYTGR 174 (1043)
Q Consensus 170 ~~l~~ 174 (1043)
.+.+.
T Consensus 192 ~hvp~ 196 (603)
T COG1217 192 DHVPA 196 (603)
T ss_pred HhCCC
Confidence 77663
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=163.74 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=119.7
Q ss_pred ccceeeeeecccccccCCcc---ccCCChhhhhhcCCccccceEEEEec--------------------------CeeEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG---AVMDSMELERQRGITIQSAATYTLWK--------------------------DHNIN 53 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~---~~~d~~~~e~~~G~T~~~~~~~~~~~--------------------------~~~i~ 53 (1043)
+++.++ |..+.||+|..-+ ..+|..++|+++|+|++..+..+.+. ..+++
T Consensus 10 ~ni~v~-Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 10 VNIGMV-GHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred EEEEEE-ccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 346666 9999999988422 23689999999999999875443321 25799
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~ 130 (1043)
|||||||.+|...+...+..+|++++|+|++.+. ..++..++..+...++ |+++|+||+|+.+.+. ....+.+.+.+
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l 168 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFV 168 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876 6777777777777775 5899999999975322 11223333322
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. . ......+++++||++|.|+++|++.+...++
T Consensus 169 ~----~------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 169 K----G------TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred c----c------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1 0 1112357899999999999999999987654
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=141.26 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=119.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||++.+ |++++||||.+..+.-|.+....++.+.+|.....+.+.+. .+.+|||+|+++|...+.+|++++.++|+|
T Consensus 23 ~KlVfl-GdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 23 YKLVFL-GDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEE-ccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 888888 99999999999999999999999998888888777777665 799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH--HHHHhcC---CCEEEEEecCCCCCCCHHHHHH--HHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTVN--RQMKRYD---VPCIAFINKLDRLGADPYRVIN--QMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~--~~l~~~~---~piilvlNKiDl~~~~~~~~~~--~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++.-+......| ....+.+ +-+++|.||.||.+...-...+ ...+. ... ..+.+
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-------------l~a---~f~et 165 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-------------LNA---EFIET 165 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHH-------------hCc---EEEEe
Confidence 999875544333322 2233333 3367899999997642111111 11111 122 34669
Q ss_pred eecccCCcchHHHHHHhhcccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRI 175 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~ 175 (1043)
||+.|.|+..|+..++..++..
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999998887754
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=140.18 Aligned_cols=109 Identities=19% Similarity=0.151 Sum_probs=78.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|+.|+|||||+++++... .. ....|+......+.+++..+.+|||||+..|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV----------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCcCcceEEEEECCEEEEEEECCCChhh
Confidence 58999999999999999997432 00 0011222223445667889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGV-QSQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+...- .......+ ..+...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 888888889999999999999752 11122222 222235789999999999874
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=148.01 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=106.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+ .|.++.+.....+.. .+..+.+|||||+.++...+..+++.+|+++
T Consensus 3 ~~kv~~v-G~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 3 SLHIVML-GLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 5788888 9999999999888777665533 343333333333322 3568999999999999999999999999999
Q ss_pred EEEeCCCCCchhHH-----HHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-----~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|+++.-..... .+.......++|+++|+||+|+...... +.+...+. +.........+++++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~ 150 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLA-------LHELSASTPWHVQPA 150 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHhC-------ccccCCCCceEEEEe
Confidence 99999864222111 1222223357899999999998643211 11221111 000011112457899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+-
T Consensus 151 SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999987664
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=143.18 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=77.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|.... ... .++..|. ....+.+++..+++|||||+.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~--~~~------------------~~~t~g~----~~~~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGED--IDT------------------ISPTLGF----QIKTLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CCC------------------cCCcccc----ceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999997331 100 0111222 222345567899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
.|.......++.+|++++|+|+.+.-... ....+... ...+.|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 70 TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 98888888899999999999998752211 11112211 235789999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=141.63 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=69.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC--
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-- 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~-- 277 (1043)
++|+++|++|+|||||+++|...... . . ......|... ++|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~----------------------~---~-----~~~~v~~~~~--~~iDtpG~~~ 49 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL----------------------A---R-----KTQAVEFNDK--GDIDTPGEYF 49 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc----------------------C---c-----cceEEEECCC--CcccCCcccc
Confidence 47999999999999999998622100 0 0 1111223222 37999996
Q ss_pred --CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 --VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 --~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.++..++..+++.+|++++|+|+.++....+..++.. ..+.|+++++||+|+..
T Consensus 50 ~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 50 SHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4566667777899999999999998765544433332 34679999999999864
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-14 Score=141.61 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=112.1
Q ss_pred eecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH--------HHHHHHhhhcCEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT--------VEVERALRVLDGAILV 80 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~--------~~~~~~~~~aD~iIlV 80 (1043)
|..++||+|...+....+ ...+..+++|++.......+.+..+.+|||||+.++. ..+...++.+|++++|
T Consensus 4 G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v 83 (157)
T cd01894 4 GRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFV 83 (157)
T ss_pred CCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Confidence 899999999966655543 2355678999999888888889999999999998743 3556778999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|++.+....+..+..++...++|+++|+||+|+...... ...+. .....+++++|+++|.|
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~----------------~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 84 VDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFY----------------SLGFGEPIPISAEHGRG 145 (157)
T ss_pred EeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHH----------------hcCCCCeEEEecccCCC
Confidence 9998877777777778888888999999999999753321 11111 11123568999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
++++++.+.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=163.14 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=120.1
Q ss_pred ccceeeeeecccccccCCccc---cCCChhhhhhcCCccccceEEEEe--------------------------cCeeEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGA---VMDSMELERQRGITIQSAATYTLW--------------------------KDHNIN 53 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~---~~d~~~~e~~~G~T~~~~~~~~~~--------------------------~~~~i~ 53 (1043)
+++.++ |...+||++..-+. .+|..++|+++|+|++..+..+.+ .+..++
T Consensus 5 ~~i~ii-G~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 5 VNIGMV-GHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred EEEEEE-ccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 456666 99999999984332 268889999999999887544321 135799
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~ 130 (1043)
|||||||.+|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++++||+|+.+.+. ....+++.+.+
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l 163 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFV 163 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999887 7788888777777765 5899999999975322 11223333322
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. . ......+++++||++|.|+++|++.+...++
T Consensus 164 ~----~------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 164 K----G------TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred h----h------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1 1 0112346899999999999999999987654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-14 Score=138.35 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=94.2
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccC
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
...+...++.+|++++|+|++++...++..+.+++... ++|+++|+||+|+... .. ...+.+.+. .
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~-~~~~~~~~~----~----- 69 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQ-RKAWAEYFK----K----- 69 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HH-HHHHHHHHH----h-----
Confidence 35677899999999999999988877777777777665 8999999999998632 11 222222221 0
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 221 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~ 221 (1043)
. ..+++++||+++.+ +++++|.+|+|||||+|+|+.
T Consensus 70 ---~-~~~ii~iSa~~~~~----------------------------------------~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 70 ---E-GIVVVFFSALKENA----------------------------------------TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred ---c-CCeEEEEEecCCCc----------------------------------------EEEEECCCCCCHHHHHHHHhC
Confidence 0 13578899998764 489999999999999999974
Q ss_pred ccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 222 YTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.... . .....|.|.+.....+ ++ .+.+|||||..
T Consensus 106 ~~~~--~------------------~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 106 KKKV--S------------------VSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred CCce--e------------------eCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 3211 0 1113344544433332 22 68999999963
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=148.81 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=111.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||+|+..+++.+.+.....|.+..+.....+.++ ...+.||||||+.++...+..+++.+|++|+
T Consensus 1 ~Kiviv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVI-GDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence 688888 999999999988888887776666666555555555554 3578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHH-------hcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~-------~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
|+|+++..+......|. .+. ..++|+++|+||+|+.+. ...+....+.+. ..+.+
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~ 144 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE---------------NGFIG 144 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH---------------cCCce
Confidence 99998654433332221 121 246799999999999631 111112222211 11235
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++.+||++|.|++++++.+...+-
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=139.99 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=78.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|......... ..+..|.+ ...+.+++..+++|||||+.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~------------------~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI------------------IVPTVGFN----VESFEKGNLSFTAFDMSGQGKY 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce------------------ecCccccc----eEEEEECCEEEEEEECCCCHhh
Confidence 5899999999999999999743211100 01112222 2234567889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHH------HhcCCCeEEEEeccCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQM------KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~------~~~~~p~ivviNKiD~~~~ 334 (1043)
...+..+++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9988999999999999999987543211 1112211 1247899999999998643
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-12 Score=153.24 Aligned_cols=166 Identities=23% Similarity=0.213 Sum_probs=109.2
Q ss_pred eeeeeecccccccCCccccCCChhhhhhc-CCccccceEEEEec------C-------e-----eEEEEeCCCCcchHHH
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQR-GITIQSAATYTLWK------D-------H-----NINIIDTPGHVDFTVE 66 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~-G~T~~~~~~~~~~~------~-------~-----~i~liDTPG~~~~~~~ 66 (1043)
+.+.|..++||||...+.. .++-...++ |+|.+.....+.+. + . .++|||||||.+|...
T Consensus 9 V~i~Gh~~~GKTSLl~~l~-~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 87 (586)
T PRK04004 9 VVVLGHVDHGKTTLLDKIR-GTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNL 87 (586)
T ss_pred EEEECCCCCCHHHHHHHHh-CcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHH
Confidence 3344999999999855543 333333343 45544433222211 0 1 2799999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-CCH--------------HHHHHHHHH---
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADP--------------YRVINQMRQ--- 128 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~~~--------------~~~~~~l~~--- 128 (1043)
+..+++.+|++++|+|+++++..++...+..+...++|+++++||+|+.. +.. ....+.+.+
T Consensus 88 ~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 88 RKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888999999999999852 110 111111111
Q ss_pred hhhhccccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 129 KTSRWISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+...+...++... ......+++|+||++|.|+++|++.+....
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 11111222222211 112346789999999999999998876544
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=139.04 Aligned_cols=110 Identities=19% Similarity=0.124 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++++|||||+++|..... .++ .. |+......+.+.+..+++|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-----------------~~~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-----------------VTT---IP----TIGFNVETVTYKNLKFQVWDLGGQTSI 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-----------------cCc---CC----ccCcCeEEEEECCEEEEEEECCCCHHH
Confidence 589999999999999999953210 000 00 111122345567889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHH-HHH---hcCCCeEEEEeccCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNR-QMK---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~-~~~---~~~~p~ivviNKiD~~~~ 334 (1043)
......+++.+|++++|+|+.+..... ....+. ... ..++|+++|+||+|+.+.
T Consensus 57 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 888888899999999999998642211 122222 222 247899999999998643
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-14 Score=142.46 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||||...+...+.+. ...|.++.+ ...+...+.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 9 ~~kv~i~-G~~~~GKTsli~~l~~~~~~-~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 9 EMRILML-GLDAAGKTTILYKLKLGQSV-TTIPTVGFN--VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred ccEEEEE-CcCCCCHHHHHHHHccCCCc-cccCCcccc--eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688888 99999999998777665543 334544433 3355567889999999999999998999999999999999
Q ss_pred eCCCCCchh--HHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQ--TLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~--~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..... ...+...+. ..++|+++|+||+|+.+.... +++++.++ +..... ...+++++||+
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~~-~~~~~~~~SAk 153 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP---HEIQEKLG-------LTRIRD-RNWYVQPSCAT 153 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH---HHHHHHcC-------CCccCC-CcEEEEEeeCC
Confidence 998643221 122222222 136899999999998643211 23333221 111111 12357899999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|+++++++|.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999988753
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-14 Score=164.94 Aligned_cols=128 Identities=30% Similarity=0.489 Sum_probs=111.7
Q ss_pred cceeeeeecccccccCC----------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc
Q psy11896 4 KVKIIHIKQEQVRGKDN----------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 61 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~----------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~ 61 (1043)
.+.|+ |-.+.||||.. ..+++|+.+.|+++|+|+......+++++++++|||||||.
T Consensus 13 niaii-Gh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 13 TFAII-SHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 34455 78888887661 12678999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
+|...+..+++.+|++|+|+|+..++..++..+++.+...++|+++++||+|+...+..++++.++..++.
T Consensus 92 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 92 DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999989999998888889999999999999877887888888877653
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-14 Score=144.62 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=108.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++|||+.......+.+. +..|. +......++..+..+.+|||||+.++...+..+++++|++|+|+
T Consensus 17 ~~ki~iv-G~~~~GKTsl~~~l~~~~~~-~~~pt--~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 17 EMRILMV-GLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCCc-cccCC--cceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688888 99999999998777665554 33343 33444556777889999999999999999999999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++.+.++ +.... .....++++||+
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~l~-------l~~~~-~~~~~~~~~Sa~ 161 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLG-------LHSLR-QRHWYIQSTCAT 161 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH---HHHHHHhC-------ccccC-CCceEEEeccCC
Confidence 9986432211 122222221 36899999999999754321 33443332 11100 112245689999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|+|++++++.+...+
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987554
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=139.47 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=78.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++++...-.. . .....+.++......+..+...+++|||||+..|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP--------Q-----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------C-----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 68999999999999999997321100 0 0011122222222333344568899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
......+++.+|++++|+|+.+....+....| ....+ .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99889999999999999999876554444333 33333 268999999999974
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=140.13 Aligned_cols=152 Identities=11% Similarity=0.027 Sum_probs=103.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||||...+.....+. +..|.+ ......+...+.++.+|||||+.++...+..+++++|++|+|+|+
T Consensus 2 kv~~~-G~~~~GKTsli~~l~~~~~~-~~~pt~--g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 2 RILMV-GLDAAGKTTILYKLKLGEIV-TTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCc-ccCCCC--CcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 77788 99999999998877666654 344433 333445666788999999999999999999999999999999999
Q ss_pred CCCCchh-HHHHHH-HHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ-TLTVNR-QMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~-~~~~~~-~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++..... ....+. .+.. .+.|+++++||+|+.+.... +++.+.+. +.... .....++++||++|
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sak~g 146 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA---AEVTDKLG-------LHSLR-NRNWYIQATCATSG 146 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH---HHHHHHhC-------ccccC-CCCEEEEEeeCCCC
Confidence 8532211 122222 2221 35899999999999653221 22222221 11101 11235688999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++++.+
T Consensus 147 ~gv~~~~~~l~~ 158 (159)
T cd04150 147 DGLYEGLDWLSN 158 (159)
T ss_pred CCHHHHHHHHhc
Confidence 999999998764
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=143.51 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=76.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|..... ..+..+|+|..... +.++ .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~---------------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV---------------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---------------------ccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 346899999999999999999963210 11234466665433 3343 6899999995
Q ss_pred CC-----------chHHHHH----HhHhcCeEEEEEeCCCC-----------cchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 278 VD-----------FTVEVER----ALRVLDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 278 ~d-----------f~~e~~~----~l~~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
.. |...+.. ++..+|++++|+|+... ....+..++..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 32 2222222 34457899999999642 2234566677777789999999999998
Q ss_pred CCC
Q psy11896 332 LGA 334 (1043)
Q Consensus 332 ~~~ 334 (1043)
...
T Consensus 143 ~~~ 145 (201)
T PRK04213 143 IKN 145 (201)
T ss_pred cCc
Confidence 643
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-14 Score=141.32 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=107.2
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHhh--hcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERALR--VLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~~--~aD~iIlVv 81 (1043)
|..++||+|+..............+|+|++.....+++++.++.+|||||+.++.. .+..++. .+|++++|+
T Consensus 3 G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 82 (158)
T cd01879 3 GNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVV 82 (158)
T ss_pred CCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEe
Confidence 88999999997666655556667899999999888999889999999999986543 2344554 899999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
|++.. ......+..+...++|+++|+||+|+.+... ....+.+...+ ..+++++||.+|.|
T Consensus 83 d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~iSa~~~~~ 144 (158)
T cd01879 83 DATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELL----------------GVPVVPTSARKGEG 144 (158)
T ss_pred eCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhh----------------CCCeEEEEccCCCC
Confidence 99863 2333444556667899999999999965321 11112222111 13678999999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+....
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=151.83 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~ 270 (1043)
...+..-+..|+++|.+|||||||+++|+.....+ ....++|+......+.+ ++..+.
T Consensus 151 ~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~v---------------------a~ypfTT~~p~~G~v~~~~~~~~~ 209 (335)
T PRK12299 151 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------ADYPFTTLHPNLGVVRVDDYKSFV 209 (335)
T ss_pred EEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCcc---------------------CCCCCceeCceEEEEEeCCCcEEE
Confidence 34445557789999999999999999997543222 12456788888877887 557899
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
++||||..+ +.....+.+..+|++++|+|+.+.-..+....| ..+.. .++|+++|+||+|+..
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 999999754 344566777889999999999854323333333 33332 3689999999999864
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-14 Score=141.29 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec----CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~----~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.|+.++ |++++||+|...+...+.+..+..|.++.+.....+.++ ..++.+|||||+.++...+..+++.+|+++
T Consensus 1 ~kv~~v-G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVV-GNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 478888 999999999988888877776666666665544444444 457999999999999999999999999999
Q ss_pred EEEeCCCCCchhHHHHHH-HHH--hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTLTVNR-QMK--RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~-~l~--~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|+++..+......|. .+. ..++|+++|+||+|+..... .+....+.+.+ . .+++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~~ 143 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL-------------Q---LPLFRT 143 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc-------------C---CeEEEE
Confidence 999998644333322222 122 23789999999999864221 11112222211 1 257889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 144 Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 144 SVKDDFNVTELFEYLAE 160 (162)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999998864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=154.96 Aligned_cols=146 Identities=29% Similarity=0.382 Sum_probs=119.1
Q ss_pred ccCCccccCCChh-----hhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchh
Q psy11896 17 GKDNVGAVMDSME-----LERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90 (1043)
Q Consensus 17 ~s~~~~~~~d~~~-----~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~ 90 (1043)
-...++|++|++. .-..-|+|.+...+.+.. +|..++|+|||||..|..+..+....+|++++|+.+.+|+.+|
T Consensus 162 VDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ 241 (683)
T KOG1145|consen 162 VDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ 241 (683)
T ss_pred ccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh
Confidence 3333444455554 334558999988877776 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 91 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 91 ~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
+.+.+..++..++|+|+++||+|.+.+++++.+.++... ++....--...+++||||++|+|++.|.+.+.-
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--------gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--------GIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--------CccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 999999999999999999999999999999888777553 222222234568999999999999999888763
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=139.37 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=104.5
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||++...+...+.+.. ..| |+......++..+.++.+|||||+.++...+..+++.+|++|+|+|+
T Consensus 1 kv~lv-G~~~~GKTsl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILIL-GLDNAGKTTILYRLQLGEVVT-TIP--TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEE-CCCCCCHHHHHHHHccCCCcC-cCC--ccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 56777 999999999987776555432 233 43444455666788999999999999999999999999999999999
Q ss_pred CCCCchh--HHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~--~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++..... ...+...+.. .++|+++|+||+|+.+.... .++...+. ... ......+++++||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~-------~~~-~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLG-------LSE-LKDRTWSIFKTSAIKG 145 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhC-------ccc-cCCCcEEEEEeeccCC
Confidence 8642211 1222222222 37899999999999754311 22222221 000 0111246899999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++.+..
T Consensus 146 ~gi~~l~~~l~~ 157 (158)
T cd04151 146 EGLDEGMDWLVN 157 (158)
T ss_pred CCHHHHHHHHhc
Confidence 999999998863
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=141.71 Aligned_cols=156 Identities=14% Similarity=0.004 Sum_probs=105.8
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||||...+...+.+. + +..|+......++..+.++.+|||||+.++...+..+++.+|++++|+|+
T Consensus 1 ~vvlv-G~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTL-GLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEE-CCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 56677 99999999998777766543 2 33455555566777888999999999999999999999999999999999
Q ss_pred CCCCchhH--HHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQT--LTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~~--~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++...... ..+...+. ..+.|+++|+||+|+...... +++.+.+. +..........++++||++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV---EEMTELLS-------LHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH---HHHHHHhC-------CccccCCCcEEEEeCcCCCC
Confidence 86422211 12222222 134799999999999643221 22222111 00000011235678999999
Q ss_pred CCcchHHHHHHhhcc
Q psy11896 159 SGKTTLTERILFYTG 173 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~l~ 173 (1043)
.|++++++.+...+.
T Consensus 147 ~gv~~~f~~l~~~~~ 161 (169)
T cd04158 147 MGLYEGLDWLSRQLV 161 (169)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999876543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=139.04 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=81.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
...++|+++|+.|+|||||+++|+... .. ......++.......+.+.+ ..+.+|||
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~ 63 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FP-------------------PGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--CC-------------------CCCCCceeeEEEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999996321 10 00111122233333455555 45788999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++++|+|+.++...+....| +.....++|.++|.||+|+.
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999889999999999999999876444333333 22223468999999999975
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=140.60 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=104.4
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHh-hhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERAL-RVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~-~~a 74 (1043)
++.++ |.+++||+|...+...+....+..+++|.+.....+.+++.+++||||||+.+. .......+ ..+
T Consensus 2 ~i~~~-G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIA-GYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEE-cCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 35556 999999999988888777766667888988888888888899999999998421 11112222 336
Q ss_pred CEEEEEEeCCCCCc---hhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 75 DGAILVLCAVGGVQ---SQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 75 D~iIlVvDa~~~~~---~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
|++|+|+|+++... ......+..+... ++|+++|+||+|+...... ....+.. .....+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~-------------~~~~~~ 144 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL---SEIEEEE-------------ELEGEE 144 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhH---HHHHHhh-------------hhccCc
Confidence 89999999986432 1222334445444 7899999999999653221 1111110 112246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|++++++.+...
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHH
Confidence 7899999999999999988754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=141.36 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE-EecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT-LWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~i~liDtPG~~ 278 (1043)
.+|+++|+.|+|||||+++++..... .. ....|.+........ .+.+..+++|||||+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-----------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-----------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-----------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 45999999999999999999742110 00 011122222111111 2356789999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|+.+.-..... .+.......++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9988788888999999999999875322211 12233334678999999999976
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=135.94 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=75.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++...... .+ ..++.........+++ ..+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~----------------~~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT----------------DY------DPTIEDSYTKQCEIDGQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc----------------cc------CCCccceEEEEEEECCEEEEEEEEECCCC
Confidence 479999999999999999997432100 00 0011111111223333 57889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+...-| +.....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 99999888999999999999999874332222222 11223478999999999975
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=140.51 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=105.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...+...+.+.....+....+.....+..+ ...+.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILL-GDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 478888 999999999988887777765554433333222223333 44789999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+|+++..+..... .+..+... ++|+++|+||+|+......+. ..+.+. . ..+++++||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~-------------~---~~~~~~~Sa~~ 142 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKK-FNFAEK-------------H---NLPLYYVSAAD 142 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHH-HHHHHH-------------c---CCeEEEEeCCC
Confidence 9998755544433 22333332 689999999999853211111 111110 1 13568899999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|.|++++++.+....
T Consensus 143 ~~gv~~l~~~l~~~~ 157 (161)
T cd04124 143 GTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=154.50 Aligned_cols=117 Identities=13% Similarity=0.207 Sum_probs=85.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liD 273 (1043)
....+-.|+|+|.+|+|||||+|+|+..... ....+++|.......+.+.+ ..+.|+|
T Consensus 155 elk~iadValVG~PNaGKSTLln~Lt~~k~~---------------------vs~~p~TT~~p~~Giv~~~~~~~i~~vD 213 (390)
T PRK12298 155 ELKLLADVGLLGLPNAGKSTFIRAVSAAKPK---------------------VADYPFTTLVPNLGVVRVDDERSFVVAD 213 (390)
T ss_pred eeeccccEEEEcCCCCCHHHHHHHHhCCccc---------------------ccCCCCCccCcEEEEEEeCCCcEEEEEe
Confidence 3445668999999999999999999754322 12356788888888888775 4699999
Q ss_pred CCCCCC-------chHHHHHHhHhcCeEEEEEeCCC----CcchHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVD-------FTVEVERALRVLDGAILVLCAVG----GVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~d-------f~~e~~~~l~~~D~~ilVvda~~----g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
|||..+ ....+.+.+..+|++++|+|+.. ....+...+.+.+.. .+.|.++|+||+|+.
T Consensus 214 tPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 214 IPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999754 33456678899999999999872 122223334444443 368999999999986
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=141.39 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=111.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|+..+++.+.+..+..|.+..+.....+..++ .++.||||||+.++...+..+++.+|++++|+
T Consensus 2 ki~iv-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVV-GDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 78888 9999999999999999988888878776666555555555 46999999999999999999999999999999
Q ss_pred eCCCCCchhHHH-HHHHHHhc----CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLT-VNRQMKRY----DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~~~----~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+..... .+..+.+. ..|+++|.||+|+.+.......+.....+. . ... .+++.+||+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~---~------~~~---~~~~e~Sa~ 148 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA---A------EMQ---AEYWSVSAL 148 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH---H------HcC---CeEEEEECC
Confidence 997633322222 22222222 246899999999854321111111101110 0 011 245789999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+.....+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=139.26 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=114.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||+|...+........+..+++|++.....+.+++ .++.+|||||+.++...+...++.+|++++|
T Consensus 1 ~ki~li-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFL-GDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 688888 9999999999888888888778889999888887777766 4699999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHH-Hhc--CCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQM-KRY--DVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l-~~~--~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+..... .+..+ ... +.|+++++||+|+.... ..+....+.+. . ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 143 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-------------L---NAMFIETS 143 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH-------------h---CCEEEEEe
Confidence 9998654333322 22222 223 48999999999985321 11111111111 1 13568899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+.+.
T Consensus 144 a~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 144 AKAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=138.92 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=115.7
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH-----------HHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~-----------~~~~~ 69 (1043)
++++.++ |..++||+|...+..... ...+..+++|++.....+..++..+.+|||||+.+.. .....
T Consensus 2 ~~~i~i~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAII-GRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 4677777 999999999966655443 3445678999988888888888899999999985431 12345
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
.++.+|++++|+|+..+...+...++..+...++|+++++||+|+.+... ....+.+.+.+. ...
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~------------~~~ 148 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP------------FLD 148 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc------------ccc
Confidence 67899999999999988777777777777777899999999999875421 122223322221 112
Q ss_pred ceeeeeeeecccCCcchHHHHHHh
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
..+++++||+++.|++++++.+..
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 357899999999999999988764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=140.89 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=106.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||||.......+.+. ...|.+ ......+...+.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 13 ~~ki~l~-G~~~~GKTsL~~~~~~~~~~-~~~~t~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMV-GLDAAGKTTILYKLKLGESV-TTIPTI--GFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHhcCCCC-CcCCcc--ccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 4788888 99999999998777666553 334433 3333455667889999999999999999999999999999999
Q ss_pred eCCCCCch-hHHHHHHHH-Hh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS-QTLTVNRQM-KR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~-~~~~~~~~l-~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ...+.+..+ .. .++|+++|+||+|+.+.... +++.+.++ +..... ....++++||+
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~~-~~~~~~~~Sa~ 157 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLG-------LHSIRD-RNWYIQPTCAT 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhC-------ccccCC-CcEEEEEeeCC
Confidence 99864221 112222222 21 35799999999999754221 22333221 111011 12356789999
Q ss_pred ccCCcchHHHHHHhh
Q psy11896 157 IDSGKTTLTERILFY 171 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~ 171 (1043)
+|.|++++++.+...
T Consensus 158 ~g~gv~e~~~~l~~~ 172 (175)
T smart00177 158 SGDGLYEGLTWLSNN 172 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=140.14 Aligned_cols=155 Identities=17% Similarity=0.064 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |..++||++...++..+.+.....|.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~i~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 1 MFKLLII-GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 3789999 9999999999888887777666666555444333444443 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... ....+.. .+.|+++|+||+|+..... .+....+.+.+ . .+++.+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------------~-~~~~~~ 143 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------------G-FEFFEA 143 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------------C-CEEEEE
Confidence 99988543222211 1222322 3578999999999964321 11112222211 1 256889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 144 SAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986543
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=140.90 Aligned_cols=155 Identities=11% Similarity=-0.023 Sum_probs=104.5
Q ss_pred ceeeeeecccccccCCccccCCChh----hhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSME----LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~----~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+.++ |..++||+|...+......+ ...+...|+......+.+++..+.+|||||+.++...+..+++.+|++++|
T Consensus 2 i~~v-G~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 2 VLIL-GLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred EEEE-ecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4556 99999999986554332211 123345677777777888899999999999999999999999999999999
Q ss_pred EeCCCCCchh-HHHHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQ-TLTVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~-~~~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|+++.-... ....+..+. ..++|+++++||+|+...... +++.+.+..... .......+++++||
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~Sa 151 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV---EEIKEVFQDKAE------EIGRRDCLVLPVSA 151 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH---HHHHHHhccccc------cccCCceEEEEeeC
Confidence 9997532111 111222221 247899999999998654221 222222211110 01112347899999
Q ss_pred cccCCcchHHHHHH
Q psy11896 156 HIDSGKTTLTERIL 169 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~ 169 (1043)
++|.|++++++.+.
T Consensus 152 ~~g~gv~e~~~~l~ 165 (167)
T cd04160 152 LEGTGVREGIEWLV 165 (167)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999998875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=159.22 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=118.3
Q ss_pred eecccccccCCcccc---CCChhhhhhcCCccccceEEEEe---------------c------------------CeeEE
Q psy11896 10 IKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW---------------K------------------DHNIN 53 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~---------------~------------------~~~i~ 53 (1043)
|--..|||+...+.+ +|..++|+++|+|++..+..+.+ . ..+++
T Consensus 41 GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 120 (460)
T PTZ00327 41 GHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVS 120 (460)
T ss_pred ccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEe
Confidence 666788988855444 47889999999999987764421 1 13699
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~ 130 (1043)
|+|||||.+|...+..++..+|++++|+|+.++ +..|+.+++..+...+++ +|+|+||+|+.+.+ ..+..+++++.+
T Consensus 121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l 200 (460)
T PTZ00327 121 FVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFV 200 (460)
T ss_pred eeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 688888888877777775 78999999997422 223334444432
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.. ......+++|+||++|.|++.|++.|...++
T Consensus 201 ~~----------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 201 KG----------TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred Hh----------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 1123468899999999999999999986554
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=137.88 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.++|+++|+.|+|||||+++|+... .. . . ..|+......+.+++..+.++||||+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~---------------~---~----~~t~~~~~~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV---------------H---T----SPTIGSNVEEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC---------------C---c----CCccccceEEEEECCeEEEEEECCCCH
Confidence 3679999999999999999996321 00 0 0 112222334566778899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH--HHHHHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~--t~~~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.|......+++.+|++++|+|+.+..... ...+.+.+.. .++|+++++||+|+.+
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99888888999999999999998753221 1122222222 3589999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=141.31 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=104.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.. .+..| |+......+.+++.++.+|||||+..+...+..+++.+|++++|+
T Consensus 14 ~~kv~iv-G~~~~GKTsL~~~l~~~~~-~~~~~--t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 14 EMRILIL-GLDNAGKTTILKKLLGEDI-DTISP--TLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCC-CCcCC--ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 3677777 9999999999766665533 22233 333344556667889999999999999989999999999999999
Q ss_pred eCCCCCchhH--HHHHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.-.... ..+...+ ...++|+++|+||+|+.+.... +++.+.+. +.. ......+++++||+
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~Sa~ 158 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE---EEIREALE-------LDK-ISSHHWRIQPCSAV 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH---HHHHHHhC-------ccc-cCCCceEEEeccCC
Confidence 9986422211 1122222 2257899999999999653221 22222221 000 01123468999999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++++.
T Consensus 159 ~g~gi~~l~~~l~ 171 (173)
T cd04154 159 TGEGLLQGIDWLV 171 (173)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=135.43 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=83.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...... ....+++|.......+.+.+..+++|||||+.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI--------------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe--------------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 69999999999999999997432111 1113466666666667788889999999999876
Q ss_pred hHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
... +...+..+|++++|+|+...........+.. ..+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 63 EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 532 3456689999999999997666655555544 56899999999999864
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=139.96 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=111.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||++...+...+.+..+..++++.+.....+..++ .++.+|||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~i~-G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 4799999 9999999999888877777777777777666666666655 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+...... +....+.+. . ..+++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~ 144 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-------------L---GIPFLET 144 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHH-------------c---CCeEEEE
Confidence 99998643222222 1222222 35799999999998643211 111111111 1 1357899
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 145 Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 145 SAKNATNVEQAFMTMARE 162 (166)
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 999999999999988754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=138.95 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=101.5
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
+.++ |+.++||+|.......+.. .....| |.......+.+.+.++.+|||||+.++...+..+++.+|++|+|+|+
T Consensus 2 i~~v-G~~~~GKTsl~~~l~~~~~~~~~~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 2 ILVV-GLDNSGKTTIINQLKPENAQSQIIVP--TVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred EEEE-CCCCCCHHHHHHHHcccCCCcceecC--ccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 4566 9999999999877666542 333333 33333445567788999999999999999999999999999999999
Q ss_pred CCCCchhH-HHHHHHH------HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 84 VGGVQSQT-LTVNRQM------KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 84 ~~~~~~~~-~~~~~~l------~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
++...... ...+..+ ...++|+++|+||+|+.+.... +.+...+. +.... ....+++++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~-------~~~~~-~~~~~~~~~Sa~ 147 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG-------LENIK-DKPWHIFASNAL 147 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC-------Ccccc-CceEEEEEeeCC
Confidence 86543211 1111111 1247899999999999754321 12222211 11001 112357899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++.+.
T Consensus 148 ~g~gv~~~~~~l~ 160 (162)
T cd04157 148 TGEGLDEGVQWLQ 160 (162)
T ss_pred CCCchHHHHHHHh
Confidence 9999999999875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=133.46 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=98.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
+|.+....||++|..|+|||||+|+|+..... .+ ....+|.|...... ++.+. +.|+|
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-Ar------------------tSktPGrTq~iNff--~~~~~-~~lVD 76 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNL-AR------------------TSKTPGRTQLINFF--EVDDE-LRLVD 76 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcce-ee------------------cCCCCCccceeEEE--EecCc-EEEEe
Confidence 44445677999999999999999999854321 11 23467888776664 44433 88999
Q ss_pred CCCC----------CCchHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC-HHHH
Q psy11896 274 TPGH----------VDFTVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRV 339 (1043)
Q Consensus 274 tPG~----------~df~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~ 339 (1043)
.||+ ..+...+..++ ....++++++|+.+++.....+++..+...++|+++++||+|+...+ ....
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 9996 12444455666 34678899999999999999999999999999999999999998633 3344
Q ss_pred HHHHHHHhC
Q psy11896 340 INQMRQKVG 348 (1043)
Q Consensus 340 ~~~i~~~l~ 348 (1043)
+..+.+.+.
T Consensus 157 l~~v~~~l~ 165 (200)
T COG0218 157 LNKVAEELK 165 (200)
T ss_pred HHHHHHHhc
Confidence 555555444
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-13 Score=150.08 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~ 270 (1043)
...+...+..|+++|.+|+|||||+++|......+ ....++|.......+.+.+ ..+.
T Consensus 150 ~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~v---------------------a~y~fTT~~p~ig~v~~~~~~~~~ 208 (329)
T TIGR02729 150 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------ADYPFTTLVPNLGVVRVDDGRSFV 208 (329)
T ss_pred EEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccc---------------------cCCCCCccCCEEEEEEeCCceEEE
Confidence 34445567789999999999999999997543222 1234566666666677766 8999
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCC---cchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG---VQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g---~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
++||||+.+ +.....+.+..+|++++|+|+... ...+....| +++.. .++|+++|+||+|+..
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 999999864 233456667789999999999863 122222222 22322 3689999999999863
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=135.12 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=78.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+...-. ....+.++.......+.+++ ..+++|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS---------------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 6999999999999999999733210 01112222222233344444 578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|+.+....+....|. .... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99988888999999999999998755444443342 2222 468999999999965
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-14 Score=143.61 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=109.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||||...++..+.+..+..|.+..+.....+..++ ..+.+|||+|+.++...+..+++++|++++|
T Consensus 1 ~Ki~vl-G~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLL-GDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 578888 9999999999999988888877777665555445566665 4699999999999999899999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCC---CHH-HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGA---DPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~---~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+...... ...+.. ...| ++|+||+|+... ... ...++.. .+. . .. . .++++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~-~~a---~------~~--~-~~~~e 145 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQAR-KYA---K------AM--K-APLIF 145 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHH-HHH---H------Hc--C-CEEEE
Confidence 99987544333222 222322 2345 688999998531 111 1111111 111 0 01 1 35688
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+-
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999886554
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=147.29 Aligned_cols=110 Identities=38% Similarity=0.635 Sum_probs=99.6
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|+.++|+++|+|+......++|+++++++|||||+.+|...+..+++.+|++|+|+|++.++..++..+++.+...
T Consensus 43 ~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~ 122 (267)
T cd04169 43 HATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR 122 (267)
T ss_pred CccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999998888888888888888
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++|+++++||+|+..++..+.++++++.++
T Consensus 123 ~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 123 GIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred CCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 999999999999987777677778777654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=156.65 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=138.4
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhcccccc
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~ 138 (1043)
.+|......+.+.++++++|+|+.+........+.+.+ .++|+++|+||+|+...+ .++..+.+++.+ +.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~----k~-- 122 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA----KE-- 122 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH----HH--
Confidence 46777777777899999999999876655555554443 268999999999986432 222222222221 11
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhH
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~ 218 (1043)
.......++.+||++|.|+++|++.+..+.. -+++.++|.+|+|||||+|+
T Consensus 123 ----~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------------------~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 123 ----LGLKPVDIILVSAKKGNGIDELLDKIKKARN-------------------------KKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred ----cCCCcCcEEEecCCCCCCHHHHHHHHHHHhC-------------------------CCeEEEECCCCCCHHHHHHH
Confidence 1111235788999999999999998865311 15799999999999999999
Q ss_pred HhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHh----------
Q psy11896 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL---------- 288 (1043)
Q Consensus 219 Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l---------- 288 (1043)
|+........ .......+|+|.......+ +..+.++||||..... ++...+
T Consensus 174 l~~~~~~~~~---------------~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~ 234 (360)
T TIGR03597 174 LLKQNNGDKD---------------VITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH-QMAHYLDKKDLKYITP 234 (360)
T ss_pred HHhhccCCcc---------------eeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-HhhhhcCHHHHhhcCC
Confidence 9864321111 0012346788877654433 2346799999976431 221111
Q ss_pred -HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCC
Q psy11896 289 -RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGH 349 (1043)
Q Consensus 289 -~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~ 349 (1043)
.......+.++....+...-..-+......+..+.++++|-+.... +.+...+-+.+.++.
T Consensus 235 ~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 235 KKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred CCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 2334556666655432222111111222234456777777776533 333444444555543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-13 Score=135.09 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEEcCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPG 276 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liDtPG 276 (1043)
+|+++|..|+|||||+++++...-.. +..+.+..+.....+.++ ...+++|||||
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK---------------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc
Confidence 69999999999999999997321100 001111122112222232 46799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+.........|..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999888889999999999999987544444444432222 378999999999975
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=144.07 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=109.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC-----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~-----------~~~~~~~~~~ 70 (1043)
.+|+.++ |..++||+|...+...+.+.....||+|++..... ++ .+.+|||||+ ..+...+..+
T Consensus 9 ~~~i~i~-G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFV-GRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3677777 99999999998888887777778999999866433 33 6999999995 3344444344
Q ss_pred h----hhcCEEEEEEeCCCCC-----------chhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 71 L----RVLDGAILVLCAVGGV-----------QSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 71 ~----~~aD~iIlVvDa~~~~-----------~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
+ ..+|++++|+|+.... ...+..++..+...++|+++|+||+|+.... .+..+++.+.++
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~---- 158 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLG---- 158 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhc----
Confidence 3 4568999999986421 1234556666667789999999999986533 223344444332
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+...+.....+++++||++| |++++++.+...+.+
T Consensus 159 ---~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 159 ---LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ---CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 10001000135789999999 999999999876543
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=139.74 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=107.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||+|...+...+.+.. . ..|.......+.+.+.++.+|||||+..+...+..+++.+|++++|+
T Consensus 15 ~~kv~~~-G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIV-GLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 4788888 999999999977776665542 2 33555556677778889999999999999999999999999999999
Q ss_pred eCCCCCchh--HHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~--~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..... ...+...+.. .++|+++++||+|+...... +++.+.++ ...... ...+++++||+
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~---~~i~~~l~-------~~~~~~-~~~~~~~~SA~ 159 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTP---AEISESLG-------LTSIRD-HTWHIQGCCAL 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCH---HHHHHHhC-------cccccC-CceEEEecccC
Confidence 998643221 1222233222 35899999999998653211 22222221 100011 12367899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++.+.
T Consensus 160 ~g~gi~e~~~~l~ 172 (174)
T cd04153 160 TGEGLPEGLDWIA 172 (174)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999885
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=140.77 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=110.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||||.......+.+. .. ..|+.+....+..++.++.+|||||+..+...+..+++.+|++++|+
T Consensus 17 ~~~i~iv-G~~~~GKTsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 17 HAKILFL-GLDNAGKTTLLHMLKNDRLA-QH--QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cCEEEEE-CCCCCCHHHHHHHHhcCCCc-cc--CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 4678888 99999999997777665442 22 33566666677778899999999999999999999999999999999
Q ss_pred eCCCCCch--hHHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS--QTLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~--~~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ....+...+. ..++|+++|+||+|++..... +++.+.++-. ....-..........++++||+
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~-~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLT-NTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHcCCC-cccccccccCCceeEEEEeecc
Confidence 99864221 1112222222 257899999999998653211 3344433210 0000000012245678999999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|++++++.+..
T Consensus 169 ~~~g~~~~~~wl~~ 182 (184)
T smart00178 169 RRMGYGEGFKWLSQ 182 (184)
T ss_pred cCCChHHHHHHHHh
Confidence 99999999998864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=136.49 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=78.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...-... .....+.........+......+++|||||+.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-------------------SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-------------------CCCceeeeEEEEEEEECCEEEEEEEEECcchHHH
Confidence 699999999999999999973321110 0011122222222233333467899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HHhcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+..+.+....|.. ....++|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 8888888999999999999998655554444422 223578999999999975
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=136.07 Aligned_cols=110 Identities=21% Similarity=0.153 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++++...-.. ++. .++..........+ ...+.+|||||+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~----------------~~~------~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD----------------DYD------PTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----------------ccC------CchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 69999999999999999997432110 000 00001111122233 3578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+.+........-| +.....+.|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888899999999999999874332222222 11222468999999999975
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=127.73 Aligned_cols=155 Identities=16% Similarity=0.036 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.|+ |++++||+|+...|.-|++....-..+.++.+...+... ..++.+|||+|++++...+..+++++++.|+
T Consensus 21 mfKllii-GnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 21 MFKLLII-GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred eeeEEEE-ccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 5799999 999999999999999999988776666666555544333 3579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+.|++..-+....+-|. +++ ..+.|+|+|.||+|+.+.. ..+.-..+.+.++ + ..+..
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG-------------f---efFEt 163 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG-------------F---EFFET 163 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC-------------h---HHhhh
Confidence 99998644333333222 222 3478999999999986421 1111123333332 2 33569
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||+.+.|+..+++.+....-
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIIC 183 (193)
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 99999999999998876554
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=140.54 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+..+..+|+++|++|+|||||+++|+.... ... .....|.|...... .++ ..+.+|
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~------------------~~~~~~~t~~~~~~--~~~-~~~~li 69 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKK-LAR------------------TSKTPGRTQLINFF--EVN-DGFRLV 69 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc------------------ccCCCCcceEEEEE--EeC-CcEEEE
Confidence 34456678999999999999999999974321 000 11134455544332 223 379999
Q ss_pred cCCCCCC----------chHHHHHHhH---hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 273 DTPGHVD----------FTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~d----------f~~e~~~~l~---~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||||+.+ |...+..+++ .+|++++|+|+..++..++..+++.+...++|+++|+||+|+..
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999632 3333334444 46899999999999999999888888888999999999999863
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=132.90 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=81.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+...-.. +. ...+.+...........+..+.+|||||+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI-----VS---------------PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe-----cc---------------CCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 579999999999999999997432100 00 0112233333333445567899999999865
Q ss_pred chH--------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~--------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
... .....++.+|++++|+|+.+........+.+.+...+.|.++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 432 33456789999999999998866666677777777789999999999986
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-13 Score=133.35 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=80.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
++|+++|++|+|||||+++|+...-.. +...+++.+.....+.+++ ..+++|||||+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN---------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc---------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 379999999999999999997332111 1233444444444455555 46899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH-Hhc--CCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM-KRY--DVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~-~~~--~~p~ivviNKiD~~ 332 (1043)
..|...+...++.+|++++|+|+.+.-+.+....| ... ... +.|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 60 ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 99988888889999999999999875443333333 222 233 48999999999985
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=141.04 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=107.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++|||+...+...+.+.. ..| |.......+...+..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 17 ~~kv~lv-G~~~vGKTsli~~~~~~~~~~-~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMV-GLDAAGKTTILYKLKLGEVVT-TIP--TIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHhcCCccc-cCC--ccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 4688888 999999999987776665543 334 334444556677889999999999999999999999999999999
Q ss_pred eCCCCCch--hHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS--QTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~--~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ....+...+.. ..+|+++|+||.|+.+.... +++...++ +.. .......++++||+
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~-------~~~-~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLG-------LHS-VRQRNWYIQGCCAT 161 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhC-------CCc-ccCCcEEEEeeeCC
Confidence 99753221 11122222222 35799999999998653222 22333322 110 00112346789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 162 tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886553
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=140.52 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=109.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+.....++.+..|.+.... ...+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~vv-G~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVML-GAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 4788888 9999999999988888888766666543222 22344555 469999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH----hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~----~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.....- +..+. ..++|+++|+||+|+.+.... .....+.+. .. .+++.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-------------~~---~~~~e 143 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-------------FN---CPFFE 143 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-------------hC---CEEEE
Confidence 999987655444332 22222 246899999999998542111 011111111 11 35678
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 144 ~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999887543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=143.90 Aligned_cols=156 Identities=30% Similarity=0.309 Sum_probs=114.1
Q ss_pred cceeeeeecccccccCCc-------------------cccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCC
Q psy11896 4 KVKIIHIKQEQVRGKDNV-------------------GAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPG 59 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~-------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG 59 (1043)
++.++ |..++||++... ++.+|..++|+++|+|++.....+.+. .+.+++|||||
T Consensus 2 nv~ii-G~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 2 NVAIA-GHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred cEEEE-cCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 35556 999999998732 245788889999999999887777654 36899999999
Q ss_pred CcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-------CHHHHHHHHHHhhhh
Q psy11896 60 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-------DPYRVINQMRQKTSR 132 (1043)
Q Consensus 60 ~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-------~~~~~~~~l~~~~~~ 132 (1043)
+.+|...+..+++.+|++|+|+|+..+...++..+++.+...++|+++|+||+|+... +....+.++.+.+..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777777777776678999999999998521 111223333344444
Q ss_pred ccccccccCCCCccc----eeeeeeeecccCCcc
Q psy11896 133 WISNESLSEHKPIEY----IRNIGISAHIDSGKT 162 (1043)
Q Consensus 133 ~~~~~~l~~~~~~~~----~~ii~iSa~~g~Gi~ 162 (1043)
.+........ ..+ ..++..|++.+.++.
T Consensus 161 ~~~~~~~~~~--~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 161 IIASFSTTLS--FLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHhcCCCc--eEeccCCCeEEEEecCCCeEEe
Confidence 4433332211 112 347778999998876
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=137.00 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=76.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++|.... . .. ...|+......+.+++..+++|||||+.+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~---------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F---------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C---------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 58899999999999999996321 0 00 011222222345677889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
...+...++.+|++++|+|+.+.-.. .....+.... ..+.|+++|.||+|+..
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 88888889999999999999863211 1122222222 13479999999999863
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=122.15 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=73.8
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-cccc
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCAS 576 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 576 (1043)
|.++|||+.+|++ |+++|+|||+|+|++||+|++...+ .++++.+|+.++|.+..++++++||||+++.|+ ++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 4689999999998 9999999999999999999987653 357899999999999999999999999999999 8899
Q ss_pred CcEEe
Q psy11896 577 GDTFV 581 (1043)
Q Consensus 577 Gdtl~ 581 (1043)
||||+
T Consensus 81 Gdtl~ 85 (86)
T cd03691 81 GDTIC 85 (86)
T ss_pred cceec
Confidence 99996
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=136.51 Aligned_cols=154 Identities=16% Similarity=0.013 Sum_probs=119.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||++++ ||+++||+.......-+.+.......+.+|.....+..++. .+.+|||+|+++|...+..|++.|+++++
T Consensus 12 ~~kvlli-GDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L 90 (207)
T KOG0078|consen 12 LFKLLLI-GDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL 90 (207)
T ss_pred EEEEEEE-CCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence 5899999 99999999999999989988887777788888888888775 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.+...+.....-| +.+.+ .++|.+||.||+|+... -..+.-+.+...++ .. .+.+
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-------------~~---F~Et 154 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-------------IK---FFET 154 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-------------Ce---EEEc
Confidence 9999865544443322 33333 36889999999998652 12233344444432 33 3569
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.||++.+-.++...
T Consensus 155 SAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred cccCCCCHHHHHHHHHHHH
Confidence 9999999999998887544
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=138.27 Aligned_cols=152 Identities=16% Similarity=0.058 Sum_probs=105.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+.....|. +.+.....+..++ ..+.||||||+.+|...+..+++.+|++++
T Consensus 1 ~~ki~i~-G~~~vGKTsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 1 EYKVVVL-GSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCc-hhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 4789999 99999999998777777766554443 3344444455555 457889999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..+..+. ..++|+++|+||+|+..... .+....+.+. +. .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~ 142 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQ-------------WG---CPFYE 142 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHH-------------cC---CeEEE
Confidence 9999864333222 2222332 23689999999999864211 1111111111 11 36789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 143 TSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ecCCCCCCHHHHHHHHHHh
Confidence 9999999999999988753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-14 Score=141.09 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=85.9
Q ss_pred EEEEEeeCCCCCCCCeEEEecccccc----CCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhH
Q psy11896 701 VIGTLEPLPPSANTKLEFIDETVGTN----VPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEIS 774 (1043)
Q Consensus 701 v~~~~eP~~~~~~~~~~f~~~~~~~~----l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~ 774 (1043)
-.|.+.| +..+++.|+|.+.+.. +..+++++|++||+||+.+|||+|+||+||+|+|.|+..|. .++++++
T Consensus 75 ~iw~fgP---~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~q 151 (178)
T cd01683 75 SIWAFGP---DTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQ 151 (178)
T ss_pred CeEEEcC---CCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHH
Confidence 3566666 2356799999887443 44578889999999999999999999999999999999998 8889999
Q ss_pred HHHHHHHHHHHHHHhccccccccceee
Q psy11896 775 FILAAHGAMKQAYEEGVWQILEPIMSV 801 (1043)
Q Consensus 775 ~~~a~~~a~~~a~~~~~~~llEP~~~~ 801 (1043)
|++|+|+||++|++.|.++||||+|.+
T Consensus 152 i~~aar~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 152 IIPTARRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHHHHHHCCCEEEcceEeC
Confidence 999999999999999999999999974
|
The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=139.97 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=78.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|+.|+|||||+++|.... ... ...|+......+.+.+..+.++||||+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~--~~~----------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR--LAQ----------------------HVPTLHPTSEELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------------------cCCccCcceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999996321 100 0012222334566778899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+.-... ....+... ...+.|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 98888888889999999999998642111 11222222 235689999999999864
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=148.34 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=100.8
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCC-chhHHH-HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccccccc
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGV-QSQTLT-VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLS 140 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~-~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~ 140 (1043)
+......+++++|++++|+|++++. +..... .+..+...++|+++|+||+||.... . ...+..+.+.
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~-~-~~~~~~~~~~--------- 94 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE-D-MEKEQLDIYR--------- 94 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH-H-HHHHHHHHHH---------
Confidence 3333445789999999999998644 333322 2334455789999999999996422 1 1112222221
Q ss_pred CCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 141 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 141 ~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.. ..+++.+||++|.|+++|++.+.. +.++++|++|+|||||+|+|+
T Consensus 95 ---~~-g~~v~~~SAktg~gi~eLf~~l~~-----------------------------~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 95 ---NI-GYQVLMTSSKNQDGLKELIEALQN-----------------------------RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred ---HC-CCeEEEEecCCchhHHHHHhhhcC-----------------------------CEEEEECCCCCCHHHHHHHHh
Confidence 01 135788999999999999987742 348899999999999999998
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
..... +.+.+... ..+.+++|.......+ .+ ..++||||...|
T Consensus 142 ~~~~~--~t~~i~~~-----------~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 142 PSVKQ--QVNDISSK-----------LGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred hhhhc--cccceecc-----------CCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 43211 11122111 1234557777666655 22 379999997553
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=152.27 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=105.8
Q ss_pred hhhhhcCCccccceEEEEecCe------------------eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchh
Q psy11896 29 ELERQRGITIQSAATYTLWKDH------------------NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90 (1043)
Q Consensus 29 ~~e~~~G~T~~~~~~~~~~~~~------------------~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~ 90 (1043)
++....|+|.+.....+.++.. .++|||||||.+|......++..+|++++|+|+++++..+
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~q 566 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQ 566 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHh
Confidence 4555668999999888876521 2899999999999888888889999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCC-CCC--------------HHHHHHHHHHhhhhc---cccccccCC------CCcc
Q psy11896 91 TLTVNRQMKRYDVPCIAFINKLDRL-GAD--------------PYRVINQMRQKTSRW---ISNESLSEH------KPIE 146 (1043)
Q Consensus 91 ~~~~~~~l~~~~~piilvlNKiDl~-~~~--------------~~~~~~~l~~~~~~~---~~~~~l~~~------~~~~ 146 (1043)
+.+.+..+...++|+++|+||+|+. .+. .++..+++...+... +...++... ....
T Consensus 567 T~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~ 646 (1049)
T PRK14845 567 TIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTR 646 (1049)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCC
Confidence 9999988888899999999999985 322 122233332221111 122222211 1123
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++||||++|+|+++|++.+.....
T Consensus 647 ~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 647 TVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 468899999999999999988765444
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=153.09 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 68 ERALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
..++.++|.+++|+|+.++. .... ...+..+...++|+++|+||+||.+.. +. +.+.+.+. ..
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~--~~-~~~~~~~~------------~~ 148 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPT--EQ-QQWQDRLQ------------QW 148 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChH--HH-HHHHHHHH------------hc
Confidence 34688999999999997533 2221 233334455789999999999997421 11 22222221 01
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
. .+++++||++|.|+++|++.+.. ..++++|++|+|||||+|+|+.....
T Consensus 149 g-~~v~~iSA~tg~GI~eL~~~L~~-----------------------------ki~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 149 G-YQPLFISVETGIGLEALLEQLRN-----------------------------KITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred C-CeEEEEEcCCCCCHHHHhhhhcc-----------------------------ceEEEEeCCCCCHHHHHHHHcCcccc
Confidence 1 25789999999999998887741 13799999999999999999843321
Q ss_pred ceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 226 ISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 226 ~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
. .+.+.+. ..+-+.+|.......+.-+ ..|+||||...|
T Consensus 199 ~--t~~vs~~-----------~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 199 R--VGKVSGK-----------LGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred c--cccccCC-----------CCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 1 1222221 1234556766654444222 279999997654
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=139.56 Aligned_cols=143 Identities=25% Similarity=0.334 Sum_probs=110.0
Q ss_pred CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC
Q psy11896 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 104 (1043)
Q Consensus 25 ~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p 104 (1043)
.|+.|+|+++|+|+.+....++..+.++-.+|+|||.||.++++....+.|++|+|+.|.+|+.+|+.+++...++.++|
T Consensus 50 id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp 129 (394)
T COG0050 50 IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP 129 (394)
T ss_pred hccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc-CC-------cchHHHHHHhhcc
Q psy11896 105 -CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID-SG-------KTTLTERILFYTG 173 (1043)
Q Consensus 105 -iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g-~G-------i~~L~~~l~~~l~ 173 (1043)
+++++||+|+.+. .++++........++..+++.. ...|++.-||..- +| |.+|++.+..|.+
T Consensus 130 ~ivvflnK~Dmvdd--~ellelVemEvreLLs~y~f~g----d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 130 YIVVFLNKVDMVDD--EELLELVEMEVRELLSEYGFPG----DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred EEEEEEecccccCc--HHHHHHHHHHHHHHHHHcCCCC----CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 7789999999862 2333444433333343333322 2345555555432 22 3555555555544
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=138.32 Aligned_cols=154 Identities=13% Similarity=0.007 Sum_probs=106.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|+..+...+.+..+..+.+..+.....+..++ .++.+|||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~ii-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIII-GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5799999 9999999999888877776655544433344333444544 478999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.+....| ..+. ..+.|+++|+||+|+...... ..++..+... .. ..+++.+||
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~~~~~~~~~~----------~~---~~~~~e~Sa 146 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDV-TYEEAKQFAD----------EN---GLLFLECSA 146 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCc-CHHHHHHHHH----------Hc---CCEEEEEEC
Confidence 9999865433332222 2222 235789999999999643210 0111111110 01 125688999
Q ss_pred cccCCcchHHHHHHh
Q psy11896 156 HIDSGKTTLTERILF 170 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~ 170 (1043)
++|.|+++++..++.
T Consensus 147 ~~~~~i~e~f~~l~~ 161 (166)
T cd04122 147 KTGENVEDAFLETAK 161 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988764
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=139.98 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=105.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |++++||+|....+....+..+..|....+.....+..+ ...+.+|||||+.++.......++.+|++|+|
T Consensus 1 ~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 688888 999999999987776666555555544333333333333 35799999999998887778889999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+|+++..+.+.... ...+.. .++|+++|+||+|+...........+.+ ....+++.+||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~----------------~~~~~~~e~Sa~~ 143 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHR----------------KKNLQYYEISAKS 143 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHH----------------HcCCEEEEEeCCC
Confidence 99986544433322 222222 2699999999999863221111111110 1123578899999
Q ss_pred cCCcchHHHHHHhhcc
Q psy11896 158 DSGKTTLTERILFYTG 173 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l~ 173 (1043)
|.|++++++.+...+-
T Consensus 144 ~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 144 NYNFEKPFLWLARKLL 159 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999986553
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=134.94 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+...-.. ......|.+.......+...+..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~ 62 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHH
Confidence 369999999999999999997332100 0111223333333333334456789999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|+...-.-.. ...+..+.. .+.|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88877788899999999999986432222 222232222 357899999999976
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=138.35 Aligned_cols=155 Identities=16% Similarity=0.020 Sum_probs=111.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+|+..+...+.+..+..|.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 3 ~~ki~vv-G~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 3 LFKLLLI-GDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4789999 9999999999888888888777777776665555555555 478999999999999888899999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.....- ...+.. .+.|+++|+||+|+.+.... ..+...+... ... .+++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~----------~~~---~~~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALAD----------EYG---IKFLETSA 147 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCC-CHHHHHHHHH----------HcC---CEEEEEeC
Confidence 999986443332222 222222 36799999999999742110 1111111111 011 25689999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 148 ~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 148 KANINVEEAFFTLAKD 163 (167)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=139.31 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=104.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++...+...+.+..+..+ ++.+.....+.+++ .++.+|||||+.++...+..+++.+|++++
T Consensus 2 ~~ki~i~-G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVV-GGGGVGKSALTIQFIQSYFVTDYDP-TIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHHhCCCCcccCC-CccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 4789999 9999999999777766665544444 33333333444555 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+..... .+..+ ...++|+++++||+|+.+..... .+...+... ... .+++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~-~~~~~~~~~------------~~~-~~~~~~S 145 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS-REEGQELAR------------KLK-IPYIETS 145 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec-HHHHHHHHH------------HcC-CcEEEee
Confidence 99998643322221 11122 22478999999999986532110 111111110 011 2568899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+...
T Consensus 146 a~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 146 AKDRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=143.44 Aligned_cols=155 Identities=13% Similarity=0.021 Sum_probs=106.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcch--------HHHHHHHhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDF--------TVEVERALR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~--------~~~~~~~~~ 72 (1043)
||+.++ |+.++||+|...+++.+.++.+..|.++.+.....+.+++ +.+.||||||+.++ ......+++
T Consensus 1 ~kI~iv-G~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVL-GAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 688888 9999999999999888888888888777665545556666 56889999998643 112445678
Q ss_pred hcCEEEEEEeCCCCCchhHHHH-HHHHH------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTV-NRQMK------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~-~~~l~------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
.+|++|+|+|+++..+...... +..+. ..++|+++|+||+|+...... ..+.++.... ..+
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~~~~~~~~~~---------~~~-- 147 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-PRHVLSVLVR---------KSW-- 147 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc-cHHHHHHHHH---------Hhc--
Confidence 9999999999986544333222 22222 246899999999999643211 0111111100 001
Q ss_pred cceeeeeeeecccCCcchHHHHHHhh
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
..+++++||++|.|+++|++.+...
T Consensus 148 -~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 148 -KCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred -CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1356889999999999999988753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=135.58 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=76.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|+.|+|||||+++|.... . ..+ ...-|.++ ....+.+..+++|||||+.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~---------------~~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--S---------------VTT---IPTVGFNV----ETVTYKNVKFNVWDVGGQDK 65 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--C---------------ccc---cCCcccce----EEEEECCEEEEEEECCCCHH
Confidence 579999999999999999996311 0 000 01112222 23445778999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHH-H---hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM-K---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~-~---~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++|+|+|+.+.... .....+... . ..+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 988888888999999999999874221 112222222 2 24589999999999863
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=152.05 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=96.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+++|+|.||+|||||+|+|+.....| ++| ..|+|.+.-...+..+|+.+.++||+|..+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AI--------------VTd------I~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAI--------------VTD------IAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceE--------------ecC------CCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 579999999999999999999776655 334 789999999999999999999999999876
Q ss_pred chHHH--------HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEV--------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~--------~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
-.+.+ ..++..+|.+++|+|+.++...+....+. +...+.|+++|+||+|+...
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 44443 34568999999999999987777777766 56678899999999998753
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=140.58 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------CeeEEEEeCCCCcchHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------DHNINIIDTPGHVDFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~~~i~liDTPG~~~~~~~~~~ 69 (1043)
.+|+.++ |++++||+|.........+..+..+.++.+.....+.+. ..++.||||||+.++...+..
T Consensus 4 ~~ki~iv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 4 LIKFLAL-GDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 3688888 999999999988888888877777766655554444433 357999999999999999999
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHH-HHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCC
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~-~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
+++++|++|+|+|+++..+......| ..+.. .+.|+++|+||+|+.... ..+....+.+.+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~------------ 150 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY------------ 150 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc------------
Confidence 99999999999999864333332222 22222 367899999999986421 111122222211
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
. .+++.+||++|.|++++++.+...
T Consensus 151 -~---~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 -G---IPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred -C---CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 256889999999999999998753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=146.33 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |+.++||||+..+++.+.++.+..|.+ .+.....+..++ +++.||||+|+.+|......++..+|++|+|
T Consensus 1 ~KVvvl-G~~gvGKTSLi~r~~~~~f~~~y~pTi-~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVL-GASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCCh-hHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 688888 999999999998888887776555533 345455556655 5788999999999888777788999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh------------cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR------------YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~------------~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|.++.-+.+.. ..+..+.. .++|+|+|+||+|+..... ...+++.+.+.. ...
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~-v~~~ei~~~~~~------------~~~ 145 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE-VQRDEVEQLVGG------------DEN 145 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc-cCHHHHHHHHHh------------cCC
Confidence 999864332222 22222321 3689999999999864211 111223222210 012
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..++++||++|.|++++++.+....
T Consensus 146 ~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=136.02 Aligned_cols=112 Identities=25% Similarity=0.238 Sum_probs=78.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+... . +.+..++++.......+.+++ +.+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F--------------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C--------------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 579999999999999999997432 1 122344566666665566777 78999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCC-------CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVG-------GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~-------g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+|........+.++.++.++|... +.......+++.+.. +.|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 9997666555666666666666543 333444444444433 889999999999864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-13 Score=157.67 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=87.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.+++..+++|||||+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 579999999999999999997432211 123567777777777888899999999999987
Q ss_pred chHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 FTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+... ....++.+|++++|+|+.++...+....|.. ..+.|+++|+||+|+..
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 6543 2345788999999999998876666666655 45789999999999863
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=137.39 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=105.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||||...+...+.+.....+.+ .+.....+..++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~v~-G~~~~GKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVL-GSGGVGKSALTIQFVQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCch-hhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 688898 999999999987777666655554433 333333444444 4788999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHH----HhcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l----~~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+.....- ...+ ...++|+++|+||+|+..... ......+.+. .. .+++++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 142 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-------------WG---CPFLET 142 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-------------cC---CEEEEe
Confidence 99986433222211 1222 224689999999999864211 1111112111 11 356899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 143 Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 143 SAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=141.88 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=107.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...++..+.+..+..|.+.... ...+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~Ki~ii-G~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 5 EYKLVVV-GGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 5899999 9999999999888888877666555443222 23333443 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+. ..++|+++|+||+|+..... ......+.+. .. .+++.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~---------------~~-~~~~e 146 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS---------------FG-IPFLE 146 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH---------------hC-CEEEE
Confidence 99998654322222 122222 23679999999999864321 1111111111 11 35788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999986654
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=152.22 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=84.4
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~ 270 (1043)
......-+..|+++|.+|||||||+++|+.....++ ...++|.......+.+. +..+.
T Consensus 151 ~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa---------------------~ypfTTl~PnlG~v~~~~~~~~~ 209 (424)
T PRK12297 151 LRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIA---------------------NYHFTTLVPNLGVVETDDGRSFV 209 (424)
T ss_pred EEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccc---------------------cCCcceeceEEEEEEEeCCceEE
Confidence 334445567899999999999999999985433221 24567777777777777 78999
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCC--cc--hHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG--VQ--SQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g--~~--~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
++||||... +.....+.+..+|++++|+|+... .. .....+...+.. .++|.++|+||+|+.
T Consensus 210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 999999754 233455666779999999999742 11 122223333332 478999999999974
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=141.31 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=108.8
Q ss_pred ccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||+|+..++..+.+.. +..+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 1 ~Ki~vv-G~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLL-GDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 688888 999999999988887777654 3455555454444455554 479999999999998888899999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|++...+..... .+..+.. .++|+++|+||+|+.... .......+...+ . .+++++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-------------~---~~~~e~ 143 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY-------------G---VPFMET 143 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc-------------C---CeEEEE
Confidence 99998643322222 2222322 367999999999985321 111112222111 1 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 144 Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 144 SAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=142.17 Aligned_cols=162 Identities=11% Similarity=0.125 Sum_probs=108.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...+...+.++.+..|.+..+.. ..+..++ +++.||||||+.++...+..+++.+|++|+|
T Consensus 2 ~ki~vv-G~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVV-GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 688888 99999999999999888887777775543332 2345555 5789999999999988888899999999999
Q ss_pred EeCCCCCchhHHH-HH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+..... .| ..+.. .++|+++|+||+|+.+.. ...+.+.......+.. ..+. .......++.+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a--~~~~~~~~~e~ 155 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLA--RDLKAVKYVEC 155 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHH--HHhCCcEEEEe
Confidence 9998654433331 22 22322 368999999999986431 1111111100000000 0000 01122467899
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.++.
T Consensus 156 SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 156 SALTQKGLKNVFDEAIL 172 (175)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999999998875
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=121.20 Aligned_cols=79 Identities=30% Similarity=0.468 Sum_probs=71.3
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-c---C-ccc
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-G---V-DCA 575 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~ 575 (1043)
|.++|||+.++++ |+++|+|||||+|++||.|++...++++++.+|+. ++.+..+++++.||||+++. | + ++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEE-ECCCccCCceECCCCEEEEEccccccCccc
Confidence 5789999999998 99999999999999999999998777899999995 47778999999999999985 4 5 578
Q ss_pred cCcEEe
Q psy11896 576 SGDTFV 581 (1043)
Q Consensus 576 ~Gdtl~ 581 (1043)
+||||+
T Consensus 80 ~Gdtl~ 85 (86)
T cd03699 80 VGDTIT 85 (86)
T ss_pred cccEee
Confidence 999997
|
The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=134.41 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=78.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+....... .....+.+.......+......+.+|||||+..|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-------------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-------------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 689999999999999999973321110 1122233333333323333467899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-----HHHhcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-----QMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-----~~~~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+....+....|. .....+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 888888889999999999998754433333332 2223578999999999986
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=144.20 Aligned_cols=154 Identities=9% Similarity=-0.013 Sum_probs=112.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||++...++..+.+..+..|.++.+.....+.++ ...+.||||||+..+...+..+++.+|++|+
T Consensus 1 ~Ki~iv-G~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVL-GDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 688888 999999999999988888888888877777666666654 3579999999999988889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh------cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~------~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++.-+......| ..+.. .+.|+++|+||+|+..... ......+... .. .+.
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-------------~~---~~~ 143 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-------------NG---MES 143 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEE
Confidence 9999864333332222 22322 2357999999999963211 1111222221 11 245
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+||++|.|++++++.++..+.
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999987654
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=127.71 Aligned_cols=130 Identities=21% Similarity=0.209 Sum_probs=101.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG~~ 278 (1043)
-+|+++|+.++||||++.++........... .. .+. ....|.+|+...+.+..+.+ +.++|.|||||.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~---~~------~~s--~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~ 79 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEAD---AS------SVS--GKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE 79 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeecc---cc------ccc--cccccceeEeecccceEEcCcceEEEecCCCcH
Confidence 4799999999999999999986544322110 00 000 01155688888888887776 899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcC-CCeEEEEeccCCCCCCHHHHH
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~~~~~~~~~ 340 (1043)
+|.-.+.-.++.++++|++||++.+.....+.++......+ +|+++++||.|+..+.+.+.+
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i 142 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKI 142 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHH
Confidence 99999999999999999999999988777777788777777 999999999999877654433
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=148.67 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=119.7
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhcC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLD 75 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~aD 75 (1043)
+.++ |..++||+|.....+.... .....+++|++.....+..++.++.||||||+.+ +...+..++..+|
T Consensus 8 V~ii-G~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 8 VAIV-GRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEE-CCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 4445 9999999999766555443 3467889999888877777778999999999864 2345566888999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
++++|+|+++++......+...+...++|+++|+||+|+... .....+.+. .+. ....+.+++++||
T Consensus 87 ~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~~-~l~-----------~~~~~~~i~~iSA 153 (292)
T PRK00089 87 LVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLLE-ELS-----------ELMDFAEIVPISA 153 (292)
T ss_pred EEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHHH-HHH-----------hhCCCCeEEEecC
Confidence 999999999877777777777777778999999999999732 222222222 111 0123457899999
Q ss_pred cccCCcchHHHHHHhhccccccccc
Q psy11896 156 HIDSGKTTLTERILFYTGRISEMHE 180 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~~~~~~~ 180 (1043)
++|.|+++|++.+...+++-+..++
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999988875443333
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=139.55 Aligned_cols=153 Identities=16% Similarity=0.078 Sum_probs=106.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+.....| ++.+.....+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~~~-G~~~~GKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVL-GSGGVGKSALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHhCCCCcccCC-cchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 4899999 9999999999877776666544444 444433445555544 57799999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..+..+. ..+.|+++|+||+|+..... ....+.+.+.+ . .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~ 142 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-------------G---CAFLE 142 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-------------C---CEEEE
Confidence 9998754332222 1222222 24689999999999964211 11112222211 1 35689
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++++..+...+
T Consensus 143 ~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 143 TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999987543
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-13 Score=134.94 Aligned_cols=115 Identities=19% Similarity=0.089 Sum_probs=75.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|+...-.. .+ ...-|++..........+...+.+|||||+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~----------------~~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS----------------AF---VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CC---CCceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 479999999999999999997322100 00 00112222222222222346799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|..+.-..+...-| +.... ...|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 988888889999999999999864333222222 22222 3578999999999853
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=153.90 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINI 271 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 271 (1043)
...+...+..|+|+|.+|+|||||+++|+.....+ ....++|+......+.+++..+.+
T Consensus 152 ~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkI---------------------adypfTTl~P~lGvv~~~~~~f~l 210 (500)
T PRK12296 152 LVLELKSVADVGLVGFPSAGKSSLISALSAAKPKI---------------------ADYPFTTLVPNLGVVQAGDTRFTV 210 (500)
T ss_pred EEEEecccceEEEEEcCCCCHHHHHHHHhcCCccc---------------------cccCcccccceEEEEEECCeEEEE
Confidence 34445556789999999999999999997543222 225678888888888889999999
Q ss_pred EcCCCCCCc-------hHHHHHHhHhcCeEEEEEeCCCC---c--chHHHH----HHHHH----------HhcCCCeEEE
Q psy11896 272 IDTPGHVDF-------TVEVERALRVLDGAILVLCAVGG---V--QSQTLT----VNRQM----------KRYDVPCIAF 325 (1043)
Q Consensus 272 iDtPG~~df-------~~e~~~~l~~~D~~ilVvda~~g---~--~~~t~~----~~~~~----------~~~~~p~ivv 325 (1043)
+||||..+- ..+..+.+..+|++|+|||+..- . ..+... +.... ...++|+++|
T Consensus 211 aDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVV 290 (500)
T PRK12296 211 ADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVV 290 (500)
T ss_pred EECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEE
Confidence 999997542 23456667889999999999741 1 111111 11111 1246899999
Q ss_pred EeccCCC
Q psy11896 326 INKLDRL 332 (1043)
Q Consensus 326 iNKiD~~ 332 (1043)
+||+|+.
T Consensus 291 lNKiDL~ 297 (500)
T PRK12296 291 LNKIDVP 297 (500)
T ss_pred EECccch
Confidence 9999985
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=140.46 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=75.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|+.|+|||||+++++...-. . ....++.......+.+++ ..+++|||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--P--------------------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c--------------------cCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999742110 0 001111111122344445 578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++|+|+|+.+....+....| ......++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 9988778888999999999999875433322222 112225789999999999863
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-13 Score=137.30 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=78.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|.+|+|||||+++|.... ... + . .|.......+.+++..+.++||||+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~--~~~---------------~---~----~t~~~~~~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDR--LAQ---------------H---Q----PTQHPTSEELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC--Ccc---------------c---C----CccccceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999996321 100 0 0 11222233456678899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
.+......+++.+|++++|+|+.+...- .....+... ...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 73 QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9888888889999999999999864211 122222222 225789999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=135.96 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=104.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+.+.+.+..+..|.+. +.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~ii-G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVV-GAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 4788888 9999999999888887776655544332 32233444554 458899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+..... .+..+. ..++|+++|+||+|+..... ......+.+.+ ..+++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 142 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY----------------GIPYIET 142 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh----------------CCeEEEe
Confidence 99988643322221 222222 24789999999999865321 11111111111 1256889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 143 Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 143 SAKTRQGVEEAFYTLVR 159 (162)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999999998874
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=138.54 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG 276 (1043)
.+.+|+++|++|+|||||+++|+...... ....+.|+......+.+.+. .+.+|||||
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G 98 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYA---------------------EDQLFATLDPTTRRLRLPDGREVLLTDTVG 98 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhcc---------------------CCccceeccceeEEEEecCCceEEEeCCCc
Confidence 35789999999999999999997432110 01122344444444555554 899999999
Q ss_pred CCCc-hHH-------HHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 277 HVDF-TVE-------VERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df-~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+. ... +...+..+|++++|+|+.++........| +.....++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 99 FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 8542 121 12235689999999999976554433222 222234689999999999864
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=145.89 Aligned_cols=126 Identities=31% Similarity=0.415 Sum_probs=110.4
Q ss_pred eeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 6 KIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
.++ |..++||+|..- ++++|+.++|+++|+|+......+.++++++++|||||+.+|...+
T Consensus 3 ~iv-G~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~ 81 (268)
T cd04170 3 ALV-GHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGET 81 (268)
T ss_pred EEE-CCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHH
Confidence 445 888888887731 3457888999999999999999999999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
..+++.+|++++|+|++.+...++..+++++...++|.++++||+|+...+....++.+++.++.
T Consensus 82 ~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 82 RAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999988888888999888899999999999999887777777888776653
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=142.11 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=109.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||||...++..+.++.+..|.+..... ..+..++ ..+.+|||||+.+|...+..+++.+|++|+|
T Consensus 4 ~ki~~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 4 IKCVVV-GDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 788888 99999999999999999888777665533221 2233444 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHh-hhhcc--ccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADPYRVINQMRQK-TSRWI--SNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~-~~~~~--~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+..... .|. .+. ..++|+++|+||.|+.+... ..+.+.+. ..... ....+.. .....+.+.+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~--~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~ 157 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAK--QIHAVKYLEC 157 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh--hHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEe
Confidence 9998754444332 232 222 24689999999999964321 01111110 00000 0000000 0112356889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.++...
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=136.40 Aligned_cols=153 Identities=15% Similarity=0.051 Sum_probs=110.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |.+++||+|+..+...+.+..+..+..+.+.....+..++ ..+.+|||||+.++...+...++.+|++++|
T Consensus 1 ~ki~v~-G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIII-GSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 688888 9999999999988888887777777666665555555554 4689999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 81 LCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+|+++..+......| ..+ ...++|+++++||+|+...... ..+....... .. . .+++.+||+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~----------~~--~-~~~~~~Sa~ 145 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV-TFLEASRFAQ----------EN--G-LLFLETSAL 145 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC-CHHHHHHHHH----------Hc--C-CEEEEEECC
Confidence 999875444332222 222 2347899999999998642110 0111111110 01 1 357889999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
++.|++++++.+..
T Consensus 146 ~~~~i~~~~~~~~~ 159 (161)
T cd04113 146 TGENVEEAFLKCAR 159 (161)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998874
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-13 Score=135.74 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=106.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+..+..+.+ .+.....+..++. .+.||||||+.+|...+..+++++|++++
T Consensus 1 ~~ki~i~-G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVL-GSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 4788888 999999999988888888776655533 2333344555553 58899999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH-H-HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP-Y-RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~-~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.+.. ..+..+.. .++|+++|+||+|+..... . .....+... . . .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-------------~--~-~~~~~ 142 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-------------W--G-CPFME 142 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-------------h--C-CEEEE
Confidence 9999864332222 22222322 4789999999999854211 1 111111111 1 1 35689
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|+++++..++..
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 143 TSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred ecCCCCCCHHHHHHHHHHh
Confidence 9999999999999988754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=136.38 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=111.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...+.+..+..|.++.+.....+..++. .+.+|||||+.++...+..+++.+|++|+
T Consensus 3 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 3 LFKIVLI-GDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 4788888 99999999999888888877777787777766666666664 68999999999999888999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+...... +..+.. .++|+++|+||+|+...... ..+....... .. ..+++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~-~~~~~~~~~~----------~~---~~~~~~~Sa 147 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTEEAKAFAE----------KN---GLSFIETSA 147 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccC-CHHHHHHHHH----------Hc---CCEEEEEEC
Confidence 999985433332221 122222 25899999999998642110 1111111110 01 135688999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 148 ~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 148 LDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=144.33 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=110.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++|||++..++..+.+..+..|.+..+.....+..+ ..++.+|||||+.+|...+..+++.+|++|+
T Consensus 13 ~~Ki~vv-G~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 91 (219)
T PLN03071 13 SFKLVIV-GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (219)
T ss_pred ceEEEEE-CcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEE
Confidence 4788888 999999999998888888877766655544444444433 4589999999999999888889999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|.++..+.+....| ..+. ..++|+++|+||+|+....... +.+ . +. . ... .+++.+||+
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~--~~~-~-~~---~------~~~---~~~~e~SAk 155 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-T-FH---R------KKN---LQYYEISAK 155 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCH--HHH-H-HH---H------hcC---CEEEEcCCC
Confidence 9999875444433222 2222 2468999999999985422110 111 1 10 0 011 245789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 156 ~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 156 SNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886554
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=133.37 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|.+|+|||||++++.... ... . .....|++... ..+.+++ ..+.+||||
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~--f~~------~-----------~~~t~~~~~~~--~~~~~~~~~~~l~l~D~~ 60 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDS--FNP------S-----------FISTIGIDFKI--RTIELDGKKIKLQIWDTA 60 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCc--CCc------c-----------cccCccceEEE--EEEEECCEEEEEEEEeCC
Confidence 35789999999999999999997321 000 0 00111222222 2233343 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|+.++..-+...-|.. .. ..+.|+++|.||+|+.
T Consensus 61 g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 61 GQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred chHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998888888899999999999987544333322322 22 2467999999999986
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=132.63 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+.++... .. ..+. +.-|.. ...+.++...+.+|||||+..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~---------------~~~~---pt~g~~----~~~~~~~~~~~~l~D~~G~~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EI---------------VTTI---PTIGFN----VETVEYKNISFTVWDVGGQDKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC---------------cccC---CCCCcc----eEEEEECCEEEEEEECCCCHhH
Confidence 5899999999999999999521 11 0110 111211 1234557788999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++|+|+|+.+... .+....+..... .+.|++++.||+|+..
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 8888888999999999999986321 112222322211 3589999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=133.30 Aligned_cols=111 Identities=20% Similarity=0.164 Sum_probs=74.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+...-.. . .....+.+. ....+.+.+ ..+++|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------~-----------~~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------Q-----------YKATIGADF--LTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------C-----------cCCccceEE--EEEEEEECCEEEEEEEEeCCChH
Confidence 69999999999999999997432100 0 000111111 112233443 467899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH--HH------hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ--MK------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~--~~------~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++|+|+|+.+....+....|.. .. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 998888888999999999999987543332322322 11 1278999999999986
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=139.57 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|.......+.. .+. ..|..+....+.+++..+.+|||||+.++...+..+++.+|++++|+
T Consensus 19 ~~ki~il-G~~~~GKStLi~~l~~~~~-~~~--~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 19 EAKILFL-GLDNAGKTTLLHMLKDDRL-AQH--VPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC-ccc--CCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688777 9999999999877766554 233 33566666778888899999999999999888999999999999999
Q ss_pred eCCCCCchh-HHH-HHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc----cccccCCCCccceeeee
Q psy11896 82 CAVGGVQSQ-TLT-VNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS----NESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 82 Da~~~~~~~-~~~-~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~~ii~ 152 (1043)
|+++.-... ... +...+. ..++|+++++||+|+...... +++++.++..-. ...+... .....++++
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 170 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGVSLKVS-GIRPIEVFM 170 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---HHHHHHhCccccccccccccccc-CceeEEEEE
Confidence 998532211 111 222221 246899999999998643222 233333221000 0000001 112246799
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999998754
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=137.19 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=75.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe---cCeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDtPG~ 277 (1043)
+|+++|.+|+|||||+++|+... ... .....+..+.....+.+ ....+.+|||||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~-------------------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQ-------------------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC-------------------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 68999999999999999997321 100 00111111122222333 3467899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH-------hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK-------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~-------~~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++|+|+|......-+....|.. +. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 9998888888999999999999987544333333321 11 2467999999999985
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-13 Score=137.94 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |+.++||++...++..+.+. .+..|.+..+.....+.+++ ..+.+|||+|...+...+..+++.+|+++
T Consensus 4 ~~kv~~v-G~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 4 VFLCFVL-GAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred EEEEEEE-CCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 3788888 99999999999998888887 66666555444444555555 46899999999998888888899999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHH-hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMK-RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~-~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+|+++..+.... ..+..+. ..++|+++|+||+|+...... ...+.+.+.+ ....++++|
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~S 147 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL---------------GLPPPLHFS 147 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc---------------CCCCCEEEE
Confidence 99999764222221 2222221 236899999999998542211 1112222221 112347899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 148 a~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 148 SKLGDSSNELFTKLATAA 165 (169)
T ss_pred eccCccHHHHHHHHHHHh
Confidence 999999999999987643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-13 Score=135.80 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||||...+...+.+..+..|.++.+.....+..++ ..+++|||||+.++...+..+++.+|++|+|
T Consensus 1 ~ki~~v-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISM-GNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 477888 9999999999988888888877777776665555555544 5799999999999998888899999999999
Q ss_pred EeCCCCCchhHHHHH-HHHH----h----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMK----R----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~----~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|+++..+......| ..+. . .+.|+++|+||+|+.... .......+... .. .+
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~ 143 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-------------KG---FK 143 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-------------cC---Ce
Confidence 999864332222221 1121 1 357899999999986311 11111111111 11 35
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++.+||++|.|++++++.+...
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=129.51 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=83.2
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCCchH
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTV 282 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~df~~ 282 (1043)
++|++|+|||||+++|+...... ....++.|.........+. +..+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999997432211 1123445555555555554 77999999999887653
Q ss_pred -------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 283 -------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 283 -------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.....++.+|++++|+|+..................+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 345577999999999999998777777666677778999999999999874
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=158.02 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=120.6
Q ss_pred ccceeeeeecccccccCCccccC-CChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch-----------HHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVM-DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF-----------TVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~-d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~-----------~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+.+. +.......+|+|++.....+.+++..+.+|||||+.+. ......+
T Consensus 174 ~~v~iv-G~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 174 IKIAII-GRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 577777 9999999998766554 33456778999999998888889999999999997531 1234567
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
++.+|++|+|+|++.+...++..++..+...++|+++|+||+|+.+.+ ..+++.+.+...+ ....+.++
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l--------~~~~~~~i 321 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---TMEEFKKELRRRL--------PFLDYAPI 321 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---HHHHHHHHHHHhc--------ccccCCCE
Confidence 899999999999999999999999988888899999999999997322 1222332222111 12345688
Q ss_pred eeeeecccCCcchHHHHHHhh
Q psy11896 151 IGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++||++|.|++++++.+...
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999888654
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=133.58 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=90.0
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.+++.+|+++|.+|+|||||+|.++...- +. ..++..+|.......+.-+..++.|.|
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv--------------~~------vS~K~~TTr~~ilgi~ts~eTQlvf~D 126 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKV--------------SA------VSRKVHTTRHRILGIITSGETQLVFYD 126 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcc--------------cc------ccccccceeeeeeEEEecCceEEEEec
Confidence 4456788999999999999999999984321 11 233566788888888888899999999
Q ss_pred CCCCCC------------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVD------------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~d------------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~ 333 (1043)
|||.+. |......++..+|.+++|+|+.+.-..-.-.+++.+.+ .++|-++|+||+|...
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 999532 33446788999999999999996322223334444443 4789999999999874
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=134.52 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=100.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
|+.++ |..++||+|...+.....+. +..| |.......+... ...+.+|||||+..+...+..+++.+|++|+|+|
T Consensus 1 ~i~i~-G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLL-GLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEE-cCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45666 99999999997777766553 2233 333333344443 4689999999999999889999999999999999
Q ss_pred CCCCCchhH--HHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQT--LTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~--~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++...... ..+...+. ..++|+++|+||+|+...... +++...+. ...+. .....+++++||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~----~~~~~---~~~~~~~~~~Sa~~ 146 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTA---EEITRRFK----LKKYC---SDRDWYVQPCSAVT 146 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCH---HHHHHHcC----CcccC---CCCcEEEEeccccc
Confidence 986532111 12222222 147899999999998643211 22222211 00011 11123678999999
Q ss_pred cCCcchHHHHHHh
Q psy11896 158 DSGKTTLTERILF 170 (1043)
Q Consensus 158 g~Gi~~L~~~l~~ 170 (1043)
|.|++++++.+..
T Consensus 147 ~~gv~~~~~~i~~ 159 (160)
T cd04156 147 GEGLAEAFRKLAS 159 (160)
T ss_pred CCChHHHHHHHhc
Confidence 9999999998863
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=140.17 Aligned_cols=148 Identities=12% Similarity=0.011 Sum_probs=105.6
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 87 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~ 87 (1043)
|+.++||+|...++..+.+..+..|.+..+.....+.++ ..++.||||||+.+|...+..+++.+|++|+|+|+++..
T Consensus 2 G~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~ 81 (200)
T smart00176 2 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV 81 (200)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH
Confidence 899999999998888888776666654444444444444 458999999999999999999999999999999999765
Q ss_pred chhHHHHHHH-HHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchH
Q psy11896 88 QSQTLTVNRQ-MKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 88 ~~~~~~~~~~-l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L 164 (1043)
+......|.. +.. .++|+++|+||+|+...... .+.+ . +. . ... ..++.+||++|.|++++
T Consensus 82 S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~-~~---~------~~~---~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 82 TYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVK--AKSI-T-FH---R------KKN---LQYYDISAKSNYNFEKP 145 (200)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--HHHH-H-HH---H------HcC---CEEEEEeCCCCCCHHHH
Confidence 5444333322 333 46899999999998542211 0111 1 10 0 011 34578999999999999
Q ss_pred HHHHHhhcc
Q psy11896 165 TERILFYTG 173 (1043)
Q Consensus 165 ~~~l~~~l~ 173 (1043)
++.+...+.
T Consensus 146 F~~l~~~i~ 154 (200)
T smart00176 146 FLWLARKLI 154 (200)
T ss_pred HHHHHHHHH
Confidence 999986553
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-13 Score=136.53 Aligned_cols=153 Identities=13% Similarity=0.033 Sum_probs=104.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||++...++..+.+..+..|.+.... ...+. .....+.+|||||+.++...+..+++.+|++|+|
T Consensus 2 ~kv~~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVF-GAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 788888 9999999999988888887665555332111 12222 2345799999999999998888899999999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh------cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQMKR------YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~l~~------~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+... ...+..+.. .++|+++|+||+|+........ +.... +. .... .+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~-~~---------~~~~---~~~~e~ 145 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-NEGAA-CA---------TEWN---CAFMET 145 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-HHHHH-HH---------HHhC---CcEEEe
Confidence 99986544332 223333332 4689999999999864211000 11111 10 0011 245889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+..+
T Consensus 146 SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 146 SAKTNHNVQELFQELLNL 163 (165)
T ss_pred ecCCCCCHHHHHHHHHhc
Confidence 999999999999998754
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=134.10 Aligned_cols=159 Identities=18% Similarity=0.059 Sum_probs=120.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+.|++|. ||+++||+|.+..++-..+.......+..+.....+..++. .+.||||+|+++|.+.-...+|.||++++
T Consensus 9 lLKViiL-GDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 9 LLKVIIL-GDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred ceEEEEe-CCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 5688877 99999999999999999999999998888888888887765 58999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-----HHHHh---cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-----RQMKR---YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-----~~l~~---~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|.|....-+......| .+... ..-|+|++.||+|+.... ........+. |... ....+.
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~----WC~s--------~gnipy 155 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT----WCKS--------KGNIPY 155 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH----HHHh--------cCCcee
Confidence 9998854444443333 33321 235899999999996522 2111112221 2211 223466
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+|||.+.|+++.++.+++..-
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred EEecccccccHHHHHHHHHHHHH
Confidence 78999999999999999887643
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-13 Score=134.76 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |+.++||++...++..+.+..+..|.+.. ....+..++.++.+|||||+.++...+..+++.+|++|+|+|++
T Consensus 2 i~iv-G~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVL-GLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEE-CCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 3455 99999999998888877776666664443 34556677889999999999999999999999999999999998
Q ss_pred CCCchhH-HH-HHHHHH-hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc----
Q psy11896 85 GGVQSQT-LT-VNRQMK-RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI---- 157 (1043)
Q Consensus 85 ~~~~~~~-~~-~~~~l~-~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~---- 157 (1043)
+...... .. +...+. ..++|+++|+||+|+...... +.+...+. ...+.... ...++++||++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~----~~~~~~~~---~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSV---QEIHKELE----LEPIARGR---RWILQGTSLDDDGSP 148 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH---HHHHHHhC----ChhhcCCC---ceEEEEeeecCCCCh
Confidence 6432221 11 222222 257899999999998654321 22222211 00111111 13456778777
Q ss_pred --cCCcchHHHHHHh
Q psy11896 158 --DSGKTTLTERILF 170 (1043)
Q Consensus 158 --g~Gi~~L~~~l~~ 170 (1043)
++|++++++.+.+
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=129.40 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=73.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++|+... ... . +. +..+.+ ....+..++ ..+++|||||+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~------~--------~~---~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVD------E--------YD---PTIEDS---YRKQVVIDGETCLLDILDTAGQ 59 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcC------C--------cC---Ccchhe---EEEEEEECCEEEEEEEEECCCC
Confidence 369999999999999999997321 100 0 00 000101 111223333 56889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+....+.... +... ...++|+++|.||+|+.
T Consensus 60 ~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 60 EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988899999999999999986433222221 1222 23478999999999976
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=129.44 Aligned_cols=109 Identities=21% Similarity=0.147 Sum_probs=76.5
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
|+++|+.|+|||||+++|....-.. ++ .+ |+........+++..+.+|||||+..|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~-----~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DT-----IP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------Cc-----cC--CCCcceEEEEECCEEEEEEECCCCHhHH
Confidence 7999999999999999996431100 00 11 1112222345567889999999999999
Q ss_pred HHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 282 VEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 282 ~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
..+..+++.+|++++|+|+.+.-. .+....+.... ..++|+++|+||+|...
T Consensus 59 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 59 SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 888999999999999999986322 22222233322 24789999999999864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=130.33 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=76.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++|+...-.. +..+.++.......+..++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL---------------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 4689999999999999999997321110 0011222222223334444 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+..|.......++.+|++|+|+|+.+....+...-| ..+.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 998888888888999999999999864433332223 22222 358999999999975
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=131.08 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=76.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
+.+|+++|.+|+|||||+++++...-.. .....++.......+..+ ...+.+|||||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE---------------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAG 60 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997321100 001111222222223333 35789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++|+|+|+.+.-.-.....|. .... .++|++++.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred cHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 9999888888899999999999998743322222222 2222 468999999999975
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=132.26 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=74.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|+...-.- ++.+.. +... ........+...+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~----------------~~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE----------------DYEPTK---ADSY-RKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc----------------ccCCcc---hhhE-EEEEEECCEEEEEEEEECCChhhh
Confidence 69999999999999999997322100 000000 0000 011122233467999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-----HHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-----QTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-----~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++++|+|....-.. ....+++.....++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 99999999999999999998763221 111112221235799999999999763
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-13 Score=133.80 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=104.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||++...+..... ..+..+ |.......+.+.+..+.+|||||+..+...+...++.+|++++|+|+
T Consensus 1 ki~ii-G~~~~GKssli~~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILIL-GLDGAGKTTILYKLKLGE-VVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEE-cCCCCCHHHHHHHHhcCC-CCCCCC--CcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 56777 999999999976666555 333333 44444556677788999999999999998999999999999999999
Q ss_pred CCCCchh-HHHHHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~-~~~~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+.+.... ....+..+ ...+.|+++|+||+|+...... +++.+.+.. .. ......+++++||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~-------~~-~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGL-------EK-ILGRRWHIQPCSAVTG 145 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhCh-------hh-ccCCcEEEEEeeCCCC
Confidence 8642211 11222222 2357899999999998753311 222222210 00 0112357889999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++.+..
T Consensus 146 ~gv~~~~~~l~~ 157 (158)
T cd00878 146 DGLDEGLDWLLQ 157 (158)
T ss_pred CCHHHHHHHHhh
Confidence 999999998863
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=151.55 Aligned_cols=114 Identities=21% Similarity=0.201 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.++++.+++|||||+.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~ 262 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI--------------------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIR 262 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc--------------------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcc
Confidence 3579999999999999999998543221 12256788887777888999999999999997
Q ss_pred CchHHH--------HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEV--------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~--------~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...+ ..+++.+|++++|+|+..+...... .+..+...+.|+++|+||+|+..
T Consensus 263 ~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 263 EHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred cchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 765432 3567889999999999987765554 45555556899999999999864
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=132.38 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=77.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+.++... .. .++ .+ |+........+++..+.+|||||+.+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~--~~---------------~~~---~~----t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLG--ES---------------VTT---IP----TIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CC---------------CCc---CC----ccccceEEEEECCEEEEEEECCCChh
Confidence 67999999999999999999521 10 000 01 11112223456788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|+++.- .......+..+. ..++|+++|.||+|+.+
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 9888888899999999999998632 122233333332 23579999999999864
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-13 Score=137.04 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=109.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|....++.+.+..+..|.+.... ...+..++ .++.||||+|+.++...+..+++++|++|+|
T Consensus 2 ~kivv~-G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTV-GDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEE-CCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 588888 9999999999999999999888777553332 22344444 5799999999999999888999999999999
Q ss_pred EeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHH--------HHHHHHHHhhhhccccccccCCCCccce
Q psy11896 81 LCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPY--------RVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 81 vDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~--------~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+|.++..+.+.. . .+..+.. .+.|+++|+||+|+.+.... ....+....+. ... ...
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a---------~~~--~~~ 148 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR---------KQI--GAA 148 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH---------HHc--CCC
Confidence 999875554443 2 2233332 36899999999999542100 00011111110 001 112
Q ss_pred eeeeeeecccCCcchHHHHHHhhc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+.+||++|.|++++++.++...
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 357899999999999999998653
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=136.07 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++...-. . .+ ....+.+. .....+..+...+++|||||+.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~--~--------------~~---~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI--D--------------EY---DPTIEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--c--------------Cc---CCchhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 68999999999999999999742110 0 00 00011111 11122333446788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~----~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|+|+.+...-.....|. .. ...++|+++|.||+|+.
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888999999999999998754322222222 22 22378999999999975
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-13 Score=136.61 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+++..+...+.+..+..|.+. +.....+..++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 2 ~ki~ii-G~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVV-GDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 588888 9999999999988888888777766542 22222334444 5789999999999988888899999999999
Q ss_pred EeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++.-+.+.. ..| ..+.. .+.|+++|+||+|+.+... ..+.+.+.....+.. ..+. ...+..+++.+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~ 155 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLEC 155 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh--hHHHHhhccCCCCCHHHHHHHH--HHcCCcEEEEe
Confidence 999865443333 122 22222 3689999999999954211 111111110000000 0000 01122356889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.++.
T Consensus 156 Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 156 SALTQKGLKTVFDEAIR 172 (174)
T ss_pred cccccCCHHHHHHHHHH
Confidence 99999999999998874
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=133.59 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=75.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... ... . .....++.+.........+...+.+|||||+.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~------~-----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEK------K-----------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------C-----------CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 69999999999999999997321 100 0 0011122222111122234568999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|..++...+....| ..+.+ .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 87777788999999999999976554444333 22222 269999999999985
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=134.08 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=78.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|....... .....|.+ ...+.+.+..+.+|||||+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--------------------~~~t~g~~----~~~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH--------------------ITPTQGFN----IKTVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc--------------------cCCCCCcc----eEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321100 01122222 22345678899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+|...+...++.+|++++|+|+.+... ......+ ......++|+++++||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 70 AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 988888888899999999999986321 1112222 222345789999999999864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=132.00 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...-.. . ....-|.+.......+......+++|||||+.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-K------------------YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-C------------------CCCccceeEEEEEEEECCeEEEEEEEECCccHHH
Confidence 69999999999999999997322100 0 0001111122222223334568899999999888
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh--------cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR--------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~--------~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|..+....+....|. .+.+ .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 877777889999999999998753333332332 2211 457999999999975
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=146.87 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=98.0
Q ss_pred hhhcCEEEEEEeCCCCCchhHHH-HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLT-VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~-~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
..++|.+++|++........... .+..+...++|.++|+||+|+.............+.+. ... .+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~------------~~g-~~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR------------NIG-YR 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHH------------hCC-Ce
Confidence 46799999999977555443332 23334567899999999999975322112222222211 011 36
Q ss_pred eeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceee
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEM 229 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~ 229 (1043)
++.+||+++.|+++|++.+.. ..++++|.+|+|||||+|+|+..... ..
T Consensus 185 v~~vSA~tg~GideL~~~L~~-----------------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~--~t 233 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTG-----------------------------RISIFVGQSGVGKSSLINALLPEAEI--LV 233 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhh-----------------------------CCEEEECCCCCCHHHHHHHhccccce--ee
Confidence 789999999999999988752 12789999999999999999843221 22
Q ss_pred eeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 230 HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 230 ~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+.+... ..+-+.+|.......+..++ .||||||...|
T Consensus 234 ~~is~~-----------~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 234 GDVSDN-----------SGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred ccccCc-----------CCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 222221 22345567666665554333 49999998765
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.6e-13 Score=134.77 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=103.8
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCc-------chHHHHHHHhhhcCE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHV-------DFTVEVERALRVLDG 76 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~-------~~~~~~~~~~~~aD~ 76 (1043)
+.++ |..++||+|...............+++|+++..+.+.+++. ++.||||||+. .+...+...++.+|+
T Consensus 3 v~iv-G~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 3 VGLV-GLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred eEEE-CCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4556 99999999996665543333345678899998888888887 99999999974 244555566778999
Q ss_pred EEEEEeCCCC-CchhHH-HHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGG-VQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~-~~~~~~-~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|+++. -..+.. .....+.. .++|+++|+||+|+.+.... .+.+..... . ....+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~----~--------~~~~~ 147 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKELLK----E--------LWGKP 147 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh--HHHHHHHHh----h--------CCCCC
Confidence 9999999875 222222 22223322 36899999999998653221 112221111 0 01235
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||+++.|++++++.+...
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 7899999999999999988753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=129.99 Aligned_cols=111 Identities=22% Similarity=0.186 Sum_probs=74.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++.. .... ....++.......+..+ ...+++|||||+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVE--------------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 59 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCc--------------------ccCCcchheEEEEEEECCEEEEEEEEECCCc
Confidence 36999999999999999999721 1100 00011111111223334 456789999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++++|+|.......+... .+... ...++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999998888999999999999987643332222 22222 22568999999999975
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-13 Score=145.10 Aligned_cols=112 Identities=37% Similarity=0.619 Sum_probs=106.5
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
...+..|.+..|+++|+++......|+++++.++|+|||||.||...+.+.+..+|.+|.|+|+..|+..|+..+++.++
T Consensus 51 ~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcr 130 (528)
T COG4108 51 GKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCR 130 (528)
T ss_pred CcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHh
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
..++|++-++||+|+...++-++++++.+.++
T Consensus 131 lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 131 LRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred hcCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence 99999999999999998899999999998774
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-13 Score=134.25 Aligned_cols=151 Identities=15% Similarity=0.040 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |++++||+|...++....+..+..|.++.+.....+..++ .++.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~vv-G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLI-GDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 578888 9999999999988888877766666666555555566655 4689999999999998899999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|.++.-+.....- +..+.. .+.|+++|.||.|+.+... .+....+.+. +. .+++++|
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~e~S 143 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE-------------YG---MDFFETS 143 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 99886433322221 121222 3579999999999864321 1111222211 11 2458899
Q ss_pred ecccCCcchHHHHHHh
Q psy11896 155 AHIDSGKTTLTERILF 170 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~ 170 (1043)
|++|.|++++++.+..
T Consensus 144 a~~~~~v~~~f~~l~~ 159 (161)
T cd04117 144 ACTNSNIKESFTRLTE 159 (161)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998874
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=148.18 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=79.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG 276 (1043)
...+|+++|++|+|||||+|+|+.... + .....+.|.+.....+.+ ++..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~--------------------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-Y--------------------AADQLFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-e--------------------eccCCccccCCEEEEEEeCCCceEEEEecCc
Confidence 456899999999999999999974321 1 112345566665566666 568999999999
Q ss_pred CC-CchHH-------HHHHhHhcCeEEEEEeCCCCcchHHH----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HV-DFTVE-------VERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~-df~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+. +...+ +...+..+|++++|+|+.+....... .++..+...+.|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 83 22222 23346889999999999976544332 22333333478999999999985
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-13 Score=135.55 Aligned_cols=155 Identities=16% Similarity=0.031 Sum_probs=107.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |.+++||+|...............++++.+.....+.+.+ ..+.+|||||+.++...+..+++.+|++++
T Consensus 7 ~~~v~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 7 LFKIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4788888 9999999999777665555545555555556556666666 458899999999999988999999999999
Q ss_pred EEeCCCCCchhHHHHH----HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~----~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|++++.+......| +.+...+.|+++|+||+|+..... ....+.+.+.. .....++.+||
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~--i~~~~~~~~~~------------~~~~~~~~~Sa 151 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE--VSQQRAEEFSD------------AQDMYYLETSA 151 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc--cCHHHHHHHHH------------HcCCeEEEeeC
Confidence 9999865433222222 222234689999999999864221 11111111110 01135688999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 152 ~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 152 KESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-13 Score=138.66 Aligned_cols=239 Identities=19% Similarity=0.228 Sum_probs=164.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-c----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-K---------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~---------- 265 (1043)
+-..||+-+||+-+||||++.++.. .. +=....|-+|.||++..+..... +
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSG---v~---------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~ 97 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISG---VH---------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPG 97 (466)
T ss_pred eeeeeecceeccccCcceeeeeecc---ce---------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcc
Confidence 3457999999999999999988841 11 11233567888888877654321 0
Q ss_pred --------------------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhc
Q psy11896 266 --------------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRY 318 (1043)
Q Consensus 266 --------------------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~ 318 (1043)
-..+.|+|+|||.-+...|..+....|++++++.+.+ ..++||.+++....-.
T Consensus 98 cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM 177 (466)
T KOG0466|consen 98 CYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM 177 (466)
T ss_pred hhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh
Confidence 0468899999998888999999999999999999985 6899999998877777
Q ss_pred CCC-eEEEEeccCCCCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHH
Q psy11896 319 DVP-CIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 396 (1043)
Q Consensus 319 ~~p-~ivviNKiD~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~ 396 (1043)
++. ++++-||+|+...+. .+..+++.+.+.
T Consensus 178 ~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~------------------------------------------------ 209 (466)
T KOG0466|consen 178 KLKHIIILQNKIDLIKESQALEQHEQIQKFIQ------------------------------------------------ 209 (466)
T ss_pred hhceEEEEechhhhhhHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 775 556669999874321 111222222111
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCC
Q psy11896 397 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 476 (1043)
Q Consensus 397 ~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~ 476 (1043)
+. . ..--|++..||.-..+++.+.++|++++|-|...
T Consensus 210 ---------------------------~t--------------~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 210 ---------------------------GT--------------V--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred ---------------------------cc--------------c--cCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 10 0 0113778889999999999999999999999532
Q ss_pred CccccccCcccceeeeCCCCCCCCCcEEEEEeeeec--C-------CccEEEEEEecCeecCCCEEEecCC------CcE
Q psy11896 477 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG--K-------FGQLTYMRCYQGKLRKGEMIYNVRT------DKK 541 (1043)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d--~-------~G~i~~~RV~sGtl~~gd~v~~~~~------~~~ 541 (1043)
...|..+.|.+.+.. | .|-++-+-+..|.|+.||.+.+-+. +..
T Consensus 247 ---------------------f~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~ 305 (466)
T KOG0466|consen 247 ---------------------FTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGN 305 (466)
T ss_pred ---------------------cCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCc
Confidence 334445555555432 1 1668889999999999999986431 111
Q ss_pred E-------EeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 542 V-------RVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 542 ~-------ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
. +|..+| .+..+++.|.+|-.+++
T Consensus 306 ~~C~Pi~SrI~sL~----AE~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 306 IKCRPIFSRIVSLF----AEQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEEeeHHHHHHHHH----hhhccceeecCCceeee
Confidence 1 233333 44556778888887766
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=135.69 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||++++......... +. ...+.+.......+......++||||||+.+|
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~------------~~------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN------------FI------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC------------cC------CcccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 6999999999999999999633211100 00 01111111111222223367899999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|+......+....| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88888888999999999999864332222222 2222 2467999999999975
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=134.22 Aligned_cols=156 Identities=15% Similarity=0.012 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...........+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 4 ~~ki~vv-G~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 4 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4789999 9999999999888777666655555445555445555554 479999999999999889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.+....| ..+.. .++|+++|+||+|+...... ..++...... . . ..+++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~----~------~---~~~~~e~Sa 148 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV-SYEEGEAFAK----E------H---GLIFMETSA 148 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC-CHHHHHHHHH----H------c---CCEEEEEeC
Confidence 9999864333332222 22222 36899999999998632110 0111111111 0 1 124688999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
+++.|+++++..+...+
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887543
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-13 Score=133.84 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=111.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||+|...+...........+.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~kv~v~-G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILI-GDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 578888 9999999999888877777666666666666556666665 5789999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.+....| ..+.. .++|+++|+||+|+.... ..+....+.+. .. .+++++|
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~-------------~~---~~~~e~S 143 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE-------------HG---LPFFETS 143 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 999864443332222 22222 468999999999986421 11111222111 11 2478999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 144 a~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 144 AKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
Rab GTPases are implicated in vesicle trafficking. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=131.85 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=77.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..++|||||+.++... .. .. ..+..|.+ ...+.+++..+++|||||+..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~--~~---------------~~---~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLG--EI---------------VT---TIPTIGFN----VETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccC--CC---------------cc---ccCCccee----EEEEEECCEEEEEEECCCCHH
Confidence 57999999999999999999521 11 00 01111222 223567788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++|+|+|+.+...-. ....+... . ..++|+++|.||+|+...
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9888888899999999999998643221 11122222 1 136899999999998643
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=134.58 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=80.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+....++|+++|++|+|||||+++|+.... .. ......|.|....... + +..+.||||
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~------------------~~~~~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKN-LA------------------RTSKTPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc------------------cccCCCCceeEEEEEe--c-CCeEEEeCC
Confidence 344678899999999999999999974210 00 0112334554433322 2 468999999
Q ss_pred CCCCC----------chHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 275 PGHVD----------FTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~d----------f~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||+.. |...+...++. ++++++|+|+..+.......+++.+...++|+++++||+|+..
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 99632 32333344443 4678889999888777776777777778999999999999863
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-13 Score=138.55 Aligned_cols=157 Identities=15% Similarity=0.027 Sum_probs=110.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||+........+..+..|.++.+.....+.+++ ..+.||||||+..+...+..+++.+|++++
T Consensus 6 ~~kivvv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 6 LFKLLII-GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4788888 9999999999888877776666666555555555555555 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|+++..+.+... .+..+.. ...|+++|+||+|+...... ..+....... ... .+++.+||+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~-~~~~~~~~~~----------~~~---~~~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV-ETEDAYKFAG----------QMG---ISLFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc-CHHHHHHHHH----------HcC---CEEEEEECC
Confidence 99998643333222 1222222 35789999999998643211 0111111110 011 357889999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+....-
T Consensus 151 ~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 151 ENINVEEMFNCITELVL 167 (199)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999887653
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=150.95 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=108.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |...+||+|.....+.........+++|+++....+.+ ++.++.||||||+.+ -...+...+..
T Consensus 190 ~~Valv-G~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ 268 (351)
T TIGR03156 190 PTVALV-GYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVRE 268 (351)
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHh
Confidence 678888 99999999998777776666678899999999998888 578999999999832 12234456889
Q ss_pred cCEEEEEEeCCCCCchhHHH----HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT----VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~----~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
||++++|+|++++....... ++..+...++|+++|+||+|+.... .. ..+.. ...+
T Consensus 269 ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~v-~~~~~-----------------~~~~ 328 (351)
T TIGR03156 269 ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--RI-ERLEE-----------------GYPE 328 (351)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--hH-HHHHh-----------------CCCC
Confidence 99999999998765443322 2222223378999999999986421 11 11100 0124
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|+++|++.+...
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhh
Confidence 6889999999999999988653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=131.52 Aligned_cols=115 Identities=18% Similarity=0.089 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++++....... .....|.+..............+++|||||+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------------HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 46899999999999999999974321110 00122333332333233334578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+......+....|.. ... .+.|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 988888889999999999999986544444443432 222 368999999999975
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=130.17 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=73.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++... ... .+. .++.......+..+ ...+.+|||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~--------------~~~------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVE--------------KYD------PTIEDSYRKQIEVDGQQCMLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc--------------ccC------CchhhhEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999997321 100 000 00000111122233 356788999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+......... +.... ..++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888888899999999999986433222222 22222 2468999999999975
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=139.67 Aligned_cols=154 Identities=8% Similarity=-0.058 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||++....++.+.++.+..|.+..+.. ..+..++ ..+.||||+|+++|......+++.+|++|+
T Consensus 13 ~~KIvvv-Gd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 13 RCKLVLV-GDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eEEEEEE-CCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4788888 99999999999999888888877776544332 2344444 479999999999999988999999999999
Q ss_pred EEeCCCCCchhH-HHHH-HHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQT-LTVN-RQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~-~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|.++..+... ...| ..+.. .+.|+++|+||+|+..... .+..+.+.+.
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~------------ 158 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ------------ 158 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH------------
Confidence 999987554443 2222 22332 3679999999999853100 0001111111
Q ss_pred CCCccceeeeeeeecccC-CcchHHHHHHhhc
Q psy11896 142 HKPIEYIRNIGISAHIDS-GKTTLTERILFYT 172 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~-Gi~~L~~~l~~~l 172 (1043)
. .....+.+||++|. |++++|..++...
T Consensus 159 -~--~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 159 -L--GAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred -c--CCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 1 11134679999998 8999999987654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=134.17 Aligned_cols=154 Identities=18% Similarity=0.059 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|+..+...+.+..+..+..+.+.....+.+++. ++.+|||||+..+...+..+++.+|++|+|
T Consensus 1 ~ki~vi-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 578888 99999999998777777666555555555555555566554 578999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHH--HHHh------cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 81 LCAVGGVQSQTLTVNR--QMKR------YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~--~l~~------~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|+++..+......|. .+.. .++|+++|+||+|+.... ..+....+.+. ....++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~ 144 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS---------------NGNIPY 144 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH---------------cCCceE
Confidence 9998654322222221 1111 268999999999996321 11111222111 122467
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+....
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=129.98 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
|+++|..|+|||||++++....... ++. +..|. ....+.+++..+.+|||||+.+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~----------------~~~---pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~ 58 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----------------SVV---PTTGF----NSVAIPTQDAIMELLEIGGSQNLR 58 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc----------------ccc---ccCCc----ceEEEeeCCeEEEEEECCCCcchh
Confidence 7899999999999999997331100 000 11111 123456778899999999999999
Q ss_pred HHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH--hcCCCeEEEEeccCCCCC
Q psy11896 282 VEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 282 ~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~--~~~~p~ivviNKiD~~~~ 334 (1043)
.....+++.+|++|+|+|+.+....... ..+..+. ..++|+++|.||+|+...
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 8888999999999999999874322221 2222222 257899999999998643
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=136.91 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=103.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||||...+...+.+.....|.++ +.....+..++. .+.||||||+.++...+..+++.+|++|+|+
T Consensus 1 ki~iv-G~~~vGKTsli~~l~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVL-GDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCCCccCCCchH-hhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 56677 9999999999887777766554444332 322333444444 5889999999999999999999999999999
Q ss_pred eCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 82 CAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|.++..+..... .+..+.. .++|+++|+||+|+..... ......+... . . .+++.
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------------~--~-~~~~e 142 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-------------L--G-CEFIE 142 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH-------------h--C-CEEEE
Confidence 998654433322 2222322 3679999999999864211 1111111111 1 1 25688
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 143 ~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 143 ASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999986543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-13 Score=120.49 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=71.7
Q ss_pred cEEEEEeeeecC-C-ccEEEEEEecCeecCCCEEEecC---------CCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 502 FIALAFKLEAGK-F-GQLTYMRCYQGKLRKGEMIYNVR---------TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 502 ~~~~V~K~~~d~-~-G~i~~~RV~sGtl~~gd~v~~~~---------~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
++++|||+.+++ + |+++|+|||||+|+.||.+++.. ...++++.+||.++|.+..++++|.|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 5 99999999999999999999876 334688999999999999999999999999999
Q ss_pred cC-ccccCcEEe
Q psy11896 571 GV-DCASGDTFV 581 (1043)
Q Consensus 571 gl-~~~~Gdtl~ 581 (1043)
|+ ++.+|+|-+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 99 677887753
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-13 Score=148.86 Aligned_cols=150 Identities=20% Similarity=0.140 Sum_probs=118.1
Q ss_pred ccceeeeeecccccccCCccccCC-ChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMD-SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d-~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
+|+.|+ |.+.+||+|...++... ..=.-..||||||.....+..+|+.+.++||+|..+- .......++.
T Consensus 218 ~kvvIi-G~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 218 LKVVII-GRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred ceEEEE-CCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 688899 99999999987666553 3346788999999999999999999999999999742 2345678899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
||.+++|+|++.+....+..++. ....++|+++|+||+|+...... ..+ . .....+++.+
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~---~~~--~--------------~~~~~~~i~i 356 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL---ESE--K--------------LANGDAIISI 356 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc---chh--h--------------ccCCCceEEE
Confidence 99999999999877777777666 44567899999999999764321 111 0 0111257899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
|+++|+|++.|.+.+.....
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EecCccCHHHHHHHHHHHHh
Confidence 99999999999999987765
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-13 Score=139.62 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=107.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||++...++..+.+..+. +.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|+
T Consensus 1 kv~vv-G~~~vGKTsll~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFM-GAAGVGKTALIQRFLYDTFEPKY-RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCCCccC-CCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 67777 99999999998888777765443 3344444555666666 57899999999999888888999999999999
Q ss_pred eCCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+......+ ..+ ...++|+++|+||+|+.........+...+... ..+ ..+++.+||+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---------~~~---~~~~~~~Sa~ 146 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---------LDW---NCGFVETSAK 146 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH---------hhc---CCcEEEecCC
Confidence 99864333322211 122 224789999999999865311111111111110 001 1356789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 147 ~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 147 DNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988665
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=136.00 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=107.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++.......+++..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++++
T Consensus 5 ~~ki~vv-G~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 5 LLKVILL-GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4688888 9999999999888888887776666555554444455554 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH-H------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM-K------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l-~------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|.++..+.+....| ..+ . ..++|+++|+||+|+...... .+++.+... .....+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~------------~~~~~~~~ 149 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS--TEEAQAWCR------------ENGDYPYF 149 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC--HHHHHHHHH------------HCCCCeEE
Confidence 9998864433322222 111 1 135799999999998632110 112222111 01123568
Q ss_pred eeeecccCCcchHHHHHHh
Q psy11896 152 GISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~ 170 (1043)
++||++|.|++++++.+..
T Consensus 150 e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999998874
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=130.58 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=116.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||+|....++.+++.++....+.+|.....+..++ .++.||||+|+++|...+.++++.|.++|+
T Consensus 11 t~KiLlI-GeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 11 TFKILLI-GESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eEEEEEE-ccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4899999 9999999999999999999888777677777766666654 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHH-HHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNRQ-MKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~-l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|.|.+..-+....++|.. +.. .++-.++|.||+|..+.......+-+ .+.+.....| +.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~-----------kfAr~h~~LF---iE~S 155 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGL-----------KFARKHRCLF---IECS 155 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHH-----------HHHHhhCcEE---EEcc
Confidence 999986555555555543 221 23446799999997531100000111 0111122223 6699
Q ss_pred ecccCCcchHHHHHHhhcccccccc
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMH 179 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~ 179 (1043)
|++.+|++..++.++.-.-+.+..+
T Consensus 156 Akt~~~V~~~FeelveKIi~tp~l~ 180 (209)
T KOG0080|consen 156 AKTRENVQCCFEELVEKIIETPSLW 180 (209)
T ss_pred hhhhccHHHHHHHHHHHHhcCcchh
Confidence 9999999988888775544433333
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=132.53 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------ecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL----------WKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------~~~~ 267 (1043)
...+|+++|..|+|||||++++....-.- . .....|.........+. ....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~--------~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP--------K-----------FITTVGIDFREKRVVYNSSGPGGTLGRGQRI 63 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--------c-----------CCCccceEEEEEEEEEcCccccccccCCCEE
Confidence 45789999999999999999996321100 0 00011111111111111 1236
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh----cCCCeEEEEeccCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 332 (1043)
.+.||||||+.+|.......++.+|++++|+|+.+.-..+...-|. .... .+.|+++|.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 7899999999999888888999999999999998744333333332 2222 367899999999975
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=130.93 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=77.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|+.|+|||||++++.... ... + .....|.+.......+......+.+|||||+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~--~~~--------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA--------------D---CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCC--------------C---CCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 3579999999999999999997321 100 0 00011222222222222234578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++|+|+|..+...-+....|.. .. ..+.|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999888889999999999999997544443333322 22 2457899999999985
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=130.63 Aligned_cols=112 Identities=20% Similarity=0.128 Sum_probs=76.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|+.|+|||||+++|.... ... . +.. .....++. ..+...+..+++|||||+.++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~------~-----~~~-----~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~ 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPE------N-----VPR-----VLPEITIP---ADVTPERVPTTIVDTSSRPQD 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCc------c-----CCC-----cccceEee---eeecCCeEEEEEEeCCCchhh
Confidence 68999999999999999997421 100 0 000 00011211 112235578999999999988
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHH--hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~--~~~~p~ivviNKiD~~~ 333 (1043)
...+...++.+|++++|+|+.+....+.. ..| ..+. ..+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 88788888999999999999876554442 223 2222 24789999999999864
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=133.42 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=91.5
Q ss_pred CEEEEEEeCCCCCchhHHHHHHH--HHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCC-----CCcc-
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQ--MKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH-----KPIE- 146 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~--l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~-----~~~~- 146 (1043)
|++++|+|++.++...+..+.+. +...++|+|+|+||+|+.+ ... +..+.+.+........+... ....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP--KEN-VEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC--HHH-HHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 79999999998887777777666 4456799999999999964 222 22222222111100000000 0000
Q ss_pred ------ceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 147 ------YIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 147 ------~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
......+|+..+.|.+.|++.+..+... .......+++++|.+|+|||||+|+|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~~~~~vG~pnvGKSslin~l~ 138 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSRN-------------------KDIKTSITVGVVGFPNVGKSSLINSLK 138 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHHHhhc-------------------cccccCcEEEEEcCCCCCHHHHHHHHh
Confidence 0111234555566666655555332210 001223569999999999999999997
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
..... .....+|+|.......+ +..+.|+||||.
T Consensus 139 ~~~~~--------------------~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 139 RSRAC--------------------NVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred Ccccc--------------------eecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 43211 12335788876555433 346899999993
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=130.53 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~d 279 (1043)
+|+++|.+|+|||||++++....-. . .....|.++. ...+ +...+.+|||||+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~------------------~~~t~~~~~~----~~~~~~~~~l~i~D~~G~~~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--T------------------TIPTVGFNVE----MLQLEKHLSLTVWDVGGQEK 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--c------------------ccCccCcceE----EEEeCCceEEEEEECCCCHh
Confidence 4899999999999999999743210 0 0011122211 1222 357899999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
|...+...++.+|++++|+|+.+..... ....+... ...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888888899999999999998753211 11112221 125789999999999863
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=132.88 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=104.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||++...+.....+..+..|..+.+.....+.+++ .++.+|||||+.++.......++.+|++++|
T Consensus 1 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLI-GDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 688888 9999999999877776666554444444333333334443 5799999999999988888999999999999
Q ss_pred EeCCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.+....| ..+ ...+.|+++|+||+|+..... .+....+... . ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 143 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-------------H---NMLFIETS 143 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 998865443332222 212 234688999999999973321 1111111111 1 13578899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+.+.
T Consensus 144 a~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 144 AKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999988653
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=127.75 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=74.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++|+....... ..+.++.......+.+ ....+++|||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK---------------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC---------------------cCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 799999999999999999974321100 0111111111122222 23478999999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|..++-..+....|.. ....++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 888877778899999999999987654433333322 122368999999999976
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=129.36 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=76.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++++... ... . +.. .-+.+. .......++...+.+|||||+.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~------~-----~~~------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRE------S-----YIP------TIEDTY-RQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC------C-----cCC------cchheE-EEEEEECCEEEEEEEEECCCCCc
Confidence 469999999999999999997321 100 0 000 000111 11222334456899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh------cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~------~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|+|.......... ..+..... .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 62 FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 988888888999999999999875544332 22333322 468999999999975
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=132.78 Aligned_cols=111 Identities=23% Similarity=0.178 Sum_probs=78.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
.|+++|..|+|||||+.++.... .. .+....++.......+.+++ ..+++|||+|+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~-------------------~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FC-------------------EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CC-------------------CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 48899999999999999996321 10 01111122222223344554 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH-H---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM-K---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~-~---~~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+..+-+....|... . ..+.|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999888999999999999999986555554444332 2 2468999999999975
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=130.10 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=78.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++++... .. .+....+........+.+++ ..+++|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FP-------------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CC-------------------CccccceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 4789999999999999999996211 00 01111122222223344444 6899999999
Q ss_pred CCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 332 (1043)
+.+|.. .....++.+|++++|+|+.+....+....|. .+.. .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 998874 4566678999999999999876666665554 3332 358999999999975
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=131.74 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC---
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD--- 279 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d--- 279 (1043)
++|++|+|||||+++|..... ......++|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~---------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---------------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---------------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhh
Confidence 579999999999999974321 01223456666666667777 89999999999743
Q ss_pred ----chHHHHHHhHhcCeEEEEEeCCCCc------chHH-HHHHHHHH----------hcCCCeEEEEeccCCCC
Q psy11896 280 ----FTVEVERALRVLDGAILVLCAVGGV------QSQT-LTVNRQMK----------RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 ----f~~e~~~~l~~~D~~ilVvda~~g~------~~~t-~~~~~~~~----------~~~~p~ivviNKiD~~~ 333 (1043)
+.......++.+|++++|+|+.... .... ........ ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2224456678899999999998762 1111 11212221 14789999999999863
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=145.00 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=97.0
Q ss_pred HhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 70 ALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.+.++|.+++|+|+.++. +... ...+..+...++|+++|+||+|+.... + ... ...... .. .
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~-~-~~~-~~~~~~------------~~-g 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE-E-EEL-ELVEAL------------AL-G 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH-H-HHH-HHHHHH------------hC-C
Confidence 378899999999998765 3332 223334556789999999999996431 1 111 111110 01 1
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCce
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 227 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~ 227 (1043)
.+++++||+++.|+++|...+.. +.++++|++|+|||||+|+|+......
T Consensus 139 ~~v~~vSA~~g~gi~~L~~~L~~-----------------------------k~~~~~G~sg~GKSTlin~l~~~~~~~- 188 (287)
T cd01854 139 YPVLAVSAKTGEGLDELREYLKG-----------------------------KTSVLVGQSGVGKSTLINALLPDLDLA- 188 (287)
T ss_pred CeEEEEECCCCccHHHHHhhhcc-----------------------------ceEEEECCCCCCHHHHHHHHhchhhcc-
Confidence 36789999999999998876631 358999999999999999998543211
Q ss_pred eeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 228 EMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 228 ~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
.+.+.. .....+++|.......+... ..++||||..+|.
T Consensus 189 -~g~v~~-----------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 189 -TGEISE-----------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred -ccceec-----------cCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 111110 11234456666655544333 3699999987763
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=128.57 Aligned_cols=113 Identities=24% Similarity=0.206 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+....... .....+.+..............+++||+||+..|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-------------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-------------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH
Confidence 699999999999999999973321110 0011122222222222234578899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+.-.......| ..... .+.|+++++||+|..
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99899999999999999999874332332223 23333 358999999999975
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=143.03 Aligned_cols=190 Identities=22% Similarity=0.274 Sum_probs=141.8
Q ss_pred eecccccccC---CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC
Q psy11896 10 IKQEQVRGKD---NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 86 (1043)
Q Consensus 10 ~~~~~gk~s~---~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~ 86 (1043)
|--..|||+. .....+|..++|+++|+|+|..+.++...++.+.|+|.|||.+|.+.+..++...|.++||||+.+|
T Consensus 7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC
Confidence 4445677754 4555679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCCE-EEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHH
Q psy11896 87 VQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165 (1043)
Q Consensus 87 ~~~~~~~~~~~l~~~~~pi-ilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~ 165 (1043)
+..|+.+++..+...+++- ++|+||+|+.+. .+..+.+++.+.. ..+...+++++|+.+|.||++|.
T Consensus 87 l~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~----------l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 87 LMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILAD----------LSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred cchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhh----------cccccccccccccccCCCHHHHH
Confidence 9999999999999999984 999999998752 2332333332211 11334567999999999999999
Q ss_pred HHHHhhccccccccccccccccccccCCCCccceeeE-----EEEEeecCCcccHHhHHh
Q psy11896 166 ERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNI-----GISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i-----~ivG~~~~GKTTL~~~Ll 220 (1043)
+.+.+.... .....+.+.++..++.-+| ++.|.+-+|+...-+.|.
T Consensus 155 ~~l~~L~~~---------~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~ 205 (447)
T COG3276 155 NELIDLLEE---------IERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLY 205 (447)
T ss_pred HHHHHhhhh---------hhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEE
Confidence 999877641 0001112233333333332 466777777766655554
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=129.22 Aligned_cols=96 Identities=23% Similarity=0.175 Sum_probs=66.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC--
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV-- 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~-- 278 (1043)
+|+++|++|+|||||+++|+..... . ..|+ ...|.+ .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------------------------~-~~t~-----~~~~~~---~~iDt~G~~~~ 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------------------------Y-KKTQ-----AVEYND---GAIDTPGEYVE 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------------------------c-ccce-----eEEEcC---eeecCchhhhh
Confidence 7999999999999999999632100 0 0111 233333 689999973
Q ss_pred --CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 --DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 --df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+...+..+++.+|++++|+|+.++...+....... .+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 233334456789999999999998776665433332 245999999999975
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=139.32 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=113.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||++.........+..+..+.+..+.....+.+++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 12 ~~Ki~iv-G~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 12 LFKIVLI-GDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3688888 9999999999888877777766667666666555666655 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.+....| ..+.. .++|+++|+||+|+.... ..+....+... . ..+++.+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-------------~---~~~~~e~ 154 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-------------E---GLSFLET 154 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH-------------c---CCEEEEE
Confidence 9999865443333222 22222 468999999999985321 11122222211 1 1367889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876653
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-12 Score=143.86 Aligned_cols=307 Identities=20% Similarity=0.187 Sum_probs=171.1
Q ss_pred eeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------C---e---eEEEEeCCCCcchHHHH
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------D---H---NINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~---~---~i~liDTPG~~~~~~~~ 67 (1043)
.+|.|--.+|||...-..-..+-.....-|+|..+...+|... . . -+.+||||||+.|....
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR 557 (1064)
T KOG1144|consen 478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR 557 (1064)
T ss_pred EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence 4555667777777643333334344445566666655444422 1 1 28999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-C------CHH--------HHHHHHHHhhhh
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-A------DPY--------RVINQMRQKTSR 132 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~------~~~--------~~~~~l~~~~~~ 132 (1043)
.++...||.+|+|+|+-.|+.+|+.+.+..++..+.|+|+++||+|++- + ... .+.+++..++..
T Consensus 558 srgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ 637 (1064)
T KOG1144|consen 558 SRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNN 637 (1064)
T ss_pred hccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999742 1 111 112222222222
Q ss_pred c---cccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccccccc-----cccc-------c
Q psy11896 133 W---ISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHETSRWI-----SNES-------L 190 (1043)
Q Consensus 133 ~---~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~~~~~-----~~~~-------~ 190 (1043)
. +..++++.. ..-.+..++|+||.+|+|+.+|+-.|.+..-. +.+.+.-.... ..+. .
T Consensus 638 ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTI 717 (1064)
T KOG1144|consen 638 IIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTI 717 (1064)
T ss_pred HHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceE
Confidence 1 112233221 12235678999999999999998887765433 22222111100 0000 0
Q ss_pred cCCCC---ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 191 SEHKP---IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 191 ~~~~~---~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
..... ...--+|+++|..|-=-||+- +||- +.. +-...=. .+|..+-+.....|+-|-..-..--..|.
T Consensus 718 DViLvNG~L~eGD~IvvcG~~GpIvTtIR-aLLt--P~P--lkElRVk---~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~ 789 (1064)
T KOG1144|consen 718 DVILVNGELHEGDQIVVCGLQGPIVTTIR-ALLT--PQP--LKELRVK---GTYVHHKEVKAAQGIKIAAKDLEKAIAGT 789 (1064)
T ss_pred EEEEEcceeccCCEEEEcCCCCchhHHHH-HhcC--Ccc--hHhhccc---cceeehhHhhhhccchhhhcchHHHhcCC
Confidence 00000 000124677777665555544 4431 110 0011111 23555556666667665443332223456
Q ss_pred eEEEEcCCCCCCchH-----HHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE
Q psy11896 268 NINIIDTPGHVDFTV-----EVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 323 (1043)
Q Consensus 268 ~i~liDtPG~~df~~-----e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i 323 (1043)
.+.+++---.++... ++...| ..+--.++|..++-| ..+.++..+....+|+.
T Consensus 790 ~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqastlg---slealleflk~~kIPv~ 850 (1064)
T KOG1144|consen 790 RLLVVGPEDDIEELKEEAMEDLESVLSRIDKSGEGVYVQASTLG---SLEALLEFLKTVKIPVS 850 (1064)
T ss_pred eeEEeCCcccHHHHHHHHHHHHHHHHHHhhccCCceEEEecccc---hHHHHHHHHhhcCcccc
Confidence 666665433333221 233333 333334555555544 23455566666677764
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=132.64 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=75.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+.++... .. ..+ .+..|.. ...+.+.+..+.+|||||+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~---------------~~~---~~T~~~~----~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EV---------------VTT---IPTIGFN----VETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cc---------------ccc---CCccccc----eEEEEECCEEEEEEECCCCHh
Confidence 57999999999999999999521 11 000 1111222 223456788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHH-Hh---cCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQM-KR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~-~~---~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|+.+.-. ......+... .. .+.|+++|.||.|+..
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 98888888999999999999975211 1112222222 11 3579999999999864
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-13 Score=134.11 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=103.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceE--EEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT--YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~--~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|...+...+.++.+ .+.++-+ ... .+...+.++.+|||||+..+...+..+++.+|++++|+
T Consensus 2 kv~iv-G~~~vGKTsl~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 2 RIVLI-GDEGVGKSSLIMSLVSEEFPEN-VPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred EEEEE-CCCCCCHHHHHHHHHhCcCCcc-CCCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 67788 9999999999888777777644 3433221 122 22224568999999999988888888899999999999
Q ss_pred eCCCCCchhHH-HHH-HHHH--hcCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~-~~l~--~~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|++++.+.... ..| ..+. ..++|+++|+||+|+.+.... ...+.+...... + . ...+++.+||+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~---~--~~~~~~e~Sa~ 147 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE------F---R--EIETCVECSAK 147 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHH------H---h--cccEEEEeccc
Confidence 99865544432 122 2233 236899999999999653321 111111111000 0 0 01256889999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+....
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-13 Score=133.30 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=105.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...+.+..+..+..........+.++ +..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLL-GDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 3788899 999999999988887777765444433322223333444 4579999999999998888889999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+... ...+..+.. .+.|+++++||+|+.... .......+... .. .+++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 143 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE-------------NG---LLFFET 143 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH-------------cC---CEEEEE
Confidence 999985432222 222233332 357899999999986321 11111111111 11 357999
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 144 SAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999999999999988654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-13 Score=139.68 Aligned_cols=155 Identities=10% Similarity=0.007 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-C--eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-D--HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~--~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |+.++||++.........+.....|.++.+.....+.+. + .++.+|||||+..+...+..+++.+|++|
T Consensus 2 ~~KIvvv-G~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVI-GDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 5899999 999999999988888777776666766666555555543 3 47999999999999988899999999999
Q ss_pred EEEeCCCCCchhHHHH-HHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~-~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|.++..+...... +..+. ....|+++|+||+|+..... ......+.+. .. .+++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~ 144 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD-------------LG---MKYI 144 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH-------------hC---CEEE
Confidence 9999986433222221 12221 12467899999999864211 1111222221 11 3567
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+||++|.|++++++.+...+.
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987554
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=146.00 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=109.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |.+.+||+|...+...........|.+|+.++...+.+.+ .+++||||||+.+ +...+.+.++.+|
T Consensus 159 dV~lv-G~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 159 DVGLV-GLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred cEEEE-cCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 45667 9999999999777666555566678999999999999877 8999999999863 5556777788899
Q ss_pred EEEEEEeCCCC---CchhHH-HHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVGG---VQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~~---~~~~~~-~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++++|+|+++. ....+. .+...+.. .++|+++|+||+|+.... . .+.+.+.+... . .
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~-~~~~~~~l~~~---------~--~ 303 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--E-LAELLKELKKA---------L--G 303 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--H-HHHHHHHHHHH---------c--C
Confidence 99999999853 111222 22223322 368999999999996532 1 12222222100 1 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++++|+++|++.+...+
T Consensus 304 -~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 -KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 3578999999999999999987643
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-13 Score=154.82 Aligned_cols=146 Identities=21% Similarity=0.111 Sum_probs=113.2
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~~ 73 (1043)
+|+.++ |...+||+|.....+.... .....+|+|++.....+.+++..+.+|||||+.++.. .+..+++.
T Consensus 216 ~kV~iv-G~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 216 LKVVIA-GRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 677788 9999999999777666543 4567899999999999999999999999999975432 24557899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++........+.. ..++|+++|+||+|+....... . ....+++++
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~----------------~~~~~~i~i 350 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------E----------------ENGKPVIRI 350 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------h----------------ccCCceEEE
Confidence 999999999988766655555444 4578999999999996432110 0 111356889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+...+.
T Consensus 351 SAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAF 370 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=133.57 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |.+++||++...+...+.++.+..+.++.+.....+.+++ +.+.+|||||+.++.. .+..+++.+|+++
T Consensus 2 ~~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVI-GDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 4788888 9999999999988888888877777776666656666665 5799999999998874 5777889999999
Q ss_pred EEEeCCCCCchhHHHHHH-HHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~-~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.+....|. .+.. .++|+++|+||+|+.+... ......+.+. .. .+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~ 144 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA-------------HS---MPLF 144 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH-------------cC---CcEE
Confidence 999998755544443333 2222 3589999999999864221 1111222211 11 3457
Q ss_pred eeeecc---cCCcchHHHHHHh
Q psy11896 152 GISAHI---DSGKTTLTERILF 170 (1043)
Q Consensus 152 ~iSa~~---g~Gi~~L~~~l~~ 170 (1043)
.+||++ +.|+++++..++.
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHH
Confidence 899999 7788888777764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=133.23 Aligned_cols=114 Identities=20% Similarity=0.154 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..|+|||||+++++... ... . .....|+... ...+.+.+ ..+.|||||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~------~-----------~~~t~~~~~~--~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG------S-----------YITTIGVDFK--IRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------C-----------cCccccceeE--EEEEEECCEEEEEEEEeCC
Confidence 35789999999999999999997321 000 0 0011122222 22233333 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH--hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~--~~~~p~ivviNKiD~~ 332 (1043)
|+..|.......++.+|++++|+|+.+.-.-+....| .... ....|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999988888899999999999999875433333223 2222 2357999999999975
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=148.16 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=114.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++-|| |-+.+||+|.+.+.+.........|+||+.++.+.+.+.+. ++.|+||||+.+ +...+...++.+|
T Consensus 161 dValV-G~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLL-GLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEE-cCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 45566 99999999987666555555667899999999999998764 699999999864 4456677899999
Q ss_pred EEEEEEeCCC----CCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVG----GVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~----~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++++|+|++. .+......+...+.. .++|+++|+||+|+... ....+.+.+... ...
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~------------~~~ 305 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVE------------ALG 305 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHH------------HhC
Confidence 9999999872 122222333444443 36899999999998642 222222221110 011
Q ss_pred c-eeeeeeeecccCCcchHHHHHHhhccccccccccc
Q psy11896 147 Y-IRNIGISAHIDSGKTTLTERILFYTGRISEMHETS 182 (1043)
Q Consensus 147 ~-~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~ 182 (1043)
+ .+++++||+++.|+++|++.+..++++-+.+++..
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~ 342 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEE 342 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcc
Confidence 1 25789999999999999999998887644443333
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=134.70 Aligned_cols=152 Identities=9% Similarity=-0.033 Sum_probs=107.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||++...++..+.++.+..|.+.... ...+..++ ..+.||||+|+.+|......+++++|++|+
T Consensus 5 ~~Kivvv-Gd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 5 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4788888 9999999999999988888877777554332 23344444 469999999999999888899999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|.++..+.... ..| ..+.. .+.|+++|+||+|+.+... .+..+++.+.
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~------------ 150 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ------------ 150 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH------------
Confidence 9999875444442 222 22322 3679999999999853110 0001111111
Q ss_pred CCCccceeeeeeeecccCC-cchHHHHHHh
Q psy11896 142 HKPIEYIRNIGISAHIDSG-KTTLTERILF 170 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~ 170 (1043)
....+.+.+||++|.| ++++++.+..
T Consensus 151 ---~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 151 ---IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred ---cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 1112457799999998 9999988765
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=134.76 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=102.8
Q ss_pred CccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc----------hHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~----------~~~~~~~ 69 (1043)
.+++.|+ |..++||+|+..+...+.+ .....+|+|.+...... + ..+.+|||||+.. +......
T Consensus 18 ~~~i~iv-G~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 18 GPEIAFA-GRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 3577777 9999999999777666542 23457788887664433 3 3799999999742 3333334
Q ss_pred Hhh---hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~---~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++ .+|++++|+|++.+....+..++..+...++|+++++||+|+.... .+...+++++.+... .
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-----------~ 162 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-----------A 162 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-----------c
Confidence 444 4689999999998888888888888888899999999999986432 233344454444310 1
Q ss_pred cceeeeeeeecccCCcc
Q psy11896 146 EYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~ 162 (1043)
...+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 12368999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=133.51 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=71.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++++... .. .+....++.......+.+++ +.+++|||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~-------------------~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FP-------------------EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CC-------------------cccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 69999999999999999997321 10 00011111111112234455 578899999987
Q ss_pred CchH----H----HHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH------hcCCCeEEEEeccCCC
Q psy11896 279 DFTV----E----VERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~----e----~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~------~~~~p~ivviNKiD~~ 332 (1043)
+|.. + ...+++.+|++|+|+|+.+..+-+....| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 6531 1 33557899999999999875444333333 2222 2468999999999985
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=144.95 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++-++ |.+.+||+|.+.+...........|+||++++.+.+.+ ++.+|++|||||+.+ +...+.+.++.+|
T Consensus 160 dVglV-G~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLV-GLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEE-cCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 45667 99999999997776655545566789999999999988 456899999999853 5567778888999
Q ss_pred EEEEEEeCCCCCchhHHH-HHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 76 GAILVLCAVGGVQSQTLT-VNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~-~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
++|+|+|+++.-..+... +...+.. .++|+++|+||+|+...... ..+.++.... . . ..+
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~-~~~~~~~~~~----~--------~-~~~ 304 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE-REKRAALELA----A--------L-GGP 304 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH-HHHHHHHHHH----h--------c-CCC
Confidence 999999998543333332 2233332 36899999999999753211 1111111110 0 0 136
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++++|+++|++.+...+.
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987654
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=132.39 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=105.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |.+++||+|...++..+.+.....+.+ .+........++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~~~-G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVV-GAGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCccccCCcc-hhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 688888 999999999988888777765544443 333333334443 5799999999999999999999999999999
Q ss_pred EeCCCCCchhH-HHHHHH-HH---hcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQ-MK---RYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~-l~---~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|..+.-+... ...+.. .. ..++|+++|+||+|+... ........+.+.+ . .+++++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 142 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-------------G---VPYVET 142 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-------------C---CeEEEe
Confidence 99875322111 112222 22 257999999999998652 1111111222111 1 357899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 143 Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 143 SAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=134.51 Aligned_cols=163 Identities=6% Similarity=-0.043 Sum_probs=106.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++|||+....+..+.++.+..|.+..+.. ..+..++ .++.+|||||+..+......+++.+|++|+
T Consensus 1 ~~Kiv~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVV-GDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 4788888 99999999999999888888777765543322 3344444 468999999999998888889999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..| ..+.. .+.|+++|+||+|+.+. .... ..+...-...+ ....+... ....+.+.
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~-~~~~-~~~~~~~~~~v~~~e~~~~a~~--~~~~~~~E 154 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD-LSTL-MELSHQRQAPVSYEQGCAIAKQ--LGAEIYLE 154 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC-hhHH-HHHHhcCCCCCCHHHHHHHHHH--hCCCEEEE
Confidence 9999875554442 222 22322 36799999999998531 1000 00000000000 00000101 11124577
Q ss_pred eeecccCC-cchHHHHHHh
Q psy11896 153 ISAHIDSG-KTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~G-i~~L~~~l~~ 170 (1043)
+||++|+| +++++..+..
T Consensus 155 ~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CccCcCCcCHHHHHHHHHH
Confidence 99999995 9999998875
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=148.62 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=79.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG 276 (1043)
.+..|+++|.+|+|||||+|+|+..... .....++|++.....+.+.+. .+.++||||
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~---------------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG 254 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY---------------------AADQLFATLDPTLRRIDVADVGETVLADTVG 254 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee---------------------eccCCCCCcCCceEEEEeCCCCeEEEEecCc
Confidence 3467999999999999999999743211 112345666666656666554 889999999
Q ss_pred CCCc-hH-------HHHHHhHhcCeEEEEEeCCCCcchHHH----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDF-TV-------EVERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df-~~-------e~~~~l~~~D~~ilVvda~~g~~~~t~----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+. .. .+...++.+|++++|+|+.+....... ..+..+...++|+++|+||+|+.
T Consensus 255 ~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 255 FIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 8542 11 133445889999999999986543332 23333334578999999999985
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=128.10 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=112.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||.+|+ ||.++||+..+++++...|..-....+.++.....++.+++ ++++|||+|++.|.+.+..+++.+.++||
T Consensus 6 ~fKyIii-Gd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 6 LFKYIII-GDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred eEEEEEE-CCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 6899999 99999999999888888887666666666666677777665 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|.|.+..-+......|. -++. .+.-++++.||+||.... ..+.-++..+. ..+.+ ..+
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-------------hgLif---mET 148 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFARE-------------HGLIF---MET 148 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHH-------------cCcee---ehh
Confidence 99998654444443332 2333 356689999999996432 11111222221 12223 359
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++++|+++.+...+...
T Consensus 149 Sakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 9999999999987766443
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=135.12 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=77.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+... ... .....|.+.. ...+.++ ...+.||||||
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~------------------~~~t~~~~~~--~~~~~~~~~~~~l~l~Dt~G 71 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED------------------LAPTIGVDFK--IKQLTVGGKRLKLTIWDTAG 71 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC------------------cCCCceeEEE--EEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997321 100 0111222222 2223333 36789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH-H----hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-K----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~-~----~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++|+|+|+.+....+... .|... . ..+.|+++|.||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 72 QERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988889999999999999998754443332 24222 1 2357899999999985
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=129.13 Aligned_cols=110 Identities=22% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||++++....- .. .+. ...+ ......+.++ ...+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~--------------~~~---~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE--------------SYD---PTIE---DSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc--------------ccC---Ccch---heEEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999962211 00 000 0001 1111222333 3578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+...-+...-| +.....++|++++.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999889999999999999999864333322222 22223578999999999975
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=117.53 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=67.9
Q ss_pred cEEEEEeeeecCC--ccEEEEEEecCeecCCCEEEecCCC---------cEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 502 FIALAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 502 ~~~~V~K~~~d~~--G~i~~~RV~sGtl~~gd~v~~~~~~---------~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
++++|||+.++++ |+++|+|||||+|++||.|++.+.+ ..++|.+|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4789999999997 5699999999999999999875321 4589999999999999999999999999999
Q ss_pred cC-ccccCcEE
Q psy11896 571 GV-DCASGDTF 580 (1043)
Q Consensus 571 gl-~~~~Gdtl 580 (1043)
|+ +..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99 55555443
|
This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=130.81 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=103.2
Q ss_pred cceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
|+.++ |+.++||++.......+ .++.+..+.+..+.....+.. ...++.+|||||+..+...+..+++.+|+++
T Consensus 2 ki~vv-G~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 2 RCAVV-GDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 77888 99999999998766544 566666665544443333333 2358999999999998888899999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCC-HHH-HHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGAD-PYR-VINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~-~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|.++..+..... ....+.. .++|+++|+||+|+.+.. ... ....+... . ..+++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~ 144 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA-------------N---QLKFFKT 144 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH-------------c---CCeEEEE
Confidence 999998643322222 2222322 358999999999986432 111 11111111 1 1256889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 145 Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 145 SALRGVGYEEPFESLARA 162 (164)
T ss_pred eCCCCCChHHHHHHHHHH
Confidence 999999999999988754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=127.21 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=76.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
...+|+++|.+|+|||||+++++... .. .+....++.......+.++ ...+.|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~ 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FD-------------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CC-------------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCC
Confidence 35789999999999999999997321 10 0001111122112223333 3567899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-----HH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-----MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-----~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|..+....+....|.. +. ..++|+++|.||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred ChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999998888888999999999999986543333333321 11 2457999999999975
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=128.84 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=109.8
Q ss_pred eeecccccccCCccccCC-C--hhhhhhcCCccccceEEEEecCeeEEEEeCCCCc-------------chHHHHHHHhh
Q psy11896 9 HIKQEQVRGKDNVGAVMD-S--MELERQRGITIQSAATYTLWKDHNINIIDTPGHV-------------DFTVEVERALR 72 (1043)
Q Consensus 9 ~~~~~~gk~s~~~~~~~d-~--~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-------------~~~~~~~~~~~ 72 (1043)
..+.+++++|+.+++.+. . -...++||.|+..++..+.. .+.|+|.||+. ++..+.+..-.
T Consensus 29 F~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 29 FAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred EEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 344444444555555554 4 56889999999999876642 39999999996 12233333334
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+..++++++|++.++...+.++++++...++|+++++||+|.++. +..+.+..+.+.+. +...+. ..++
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~-------~~~~~~---~~~~ 175 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK-------KPPPDD---QWVV 175 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc-------CCCCcc---ceEE
Confidence 567899999999999999999999999999999999999998763 34445566655442 111111 1278
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..|+.++.|+++|...|...+.
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEecccccCHHHHHHHHHHHhh
Confidence 8999999999999999887654
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-12 Score=128.30 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=79.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++|... .... .....|. ....+.+++..++++||||+..|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~------------------~~~t~g~----~~~~~~~~~~~~~i~D~~G~~~~ 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKK------------------VAPTVGF----TPTKLRLDKYEVCIFDLGGGANF 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcc------------------ccCcccc----eEEEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999632 1000 0111122 23346678899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHHh----cCCCeEEEEeccCCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~~~ 335 (1043)
......+++.+|++|+|+|+.+.-..+ ....+..... .++|+++|+||+|+....
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 988899999999999999998743222 2222332222 478999999999987543
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-13 Score=132.11 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=116.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||++++ ||+++||+...-.+..|.+..+.++.+.+++.+..+..++. +..||||+|+++|...+..+++.|-++++
T Consensus 14 lFKiVli-GDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 14 LFKIVLI-GDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred EEEEEEe-CCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 5899999 99999999999999999999999998887777777776665 78999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|.|.+...+.+...-| +.++. .++++++|.||+||.+. -+.+.-..+.+. ..+ ..+.+
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-------------~~l---~f~Et 156 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-------------EGL---FFLET 156 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-------------cCc---eEEEe
Confidence 9999876555543322 23333 36889999999999541 111111112221 122 23669
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||..+.|++..++.+....
T Consensus 157 SAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEI 175 (222)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999987765443
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=130.42 Aligned_cols=152 Identities=14% Similarity=0.052 Sum_probs=101.0
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |..++||++...... +.++.+..| |+......+..++..+.+|||||+.++...+..+++.+|++|+|+|++
T Consensus 2 i~~~-G~~~~GKTsl~~~l~-~~~~~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 2 LLTV-GLDNAGKTTLVSALQ-GEIPKKVAP--TVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred EEEE-CCCCCCHHHHHHHHh-CCCCccccC--cccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4555 999999999965544 444444333 444445567778899999999999999999999999999999999998
Q ss_pred CCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 85 GGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 85 ~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+...... ...+..+.. .++|+++|+||+|+.+.. ..+..+.+. +. .+.... .....++++||++|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~------~~~~~~-~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--LE------KLVNEN-KSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--cc------cccCCC-CceEEEEEeEceeC
Confidence 6432222 222222221 478999999999997643 222222210 00 111111 11246788999998
Q ss_pred ------CCcchHHHHHH
Q psy11896 159 ------SGKTTLTERIL 169 (1043)
Q Consensus 159 ------~Gi~~L~~~l~ 169 (1043)
.|+++.+++|.
T Consensus 149 ~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 149 LGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCCccccCHHHHHHHHh
Confidence 78888777764
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=136.55 Aligned_cols=165 Identities=17% Similarity=0.061 Sum_probs=108.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |+.++||+++..+...+.+.. ..| |+........+..+.+.||||||+..+...+..+++.+|++|+|+|
T Consensus 1 ~KIviv-G~~~vGKTSLi~r~~~~~f~~-~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLL-GDMNVGKTSLLHRYMERRFKD-TVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEE-CCCCCcHHHHHHHHhcCCCCC-CCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 578888 999999999999888888763 233 4444444445567789999999999999989999999999999999
Q ss_pred CCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC------------------HH---HHHHHHHHhhhhccccc
Q psy11896 83 AVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD------------------PY---RVINQMRQKTSRWISNE 137 (1043)
Q Consensus 83 a~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~------------------~~---~~~~~l~~~~~~~~~~~ 137 (1043)
+++..+..... .+..+. ..++|+|+|+||+|+.... .. +....+.+.++.. .
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~---~ 153 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY---K 153 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc---c
Confidence 98754433332 222222 2357999999999986410 00 0111111111000 0
Q ss_pred cccCCC-CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 138 SLSEHK-PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 138 ~l~~~~-~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
-+.+.. .....+++.+||++|.|+++++..++...-+
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000000 0111356789999999999999999876654
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=150.00 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=88.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+||++|++|+|||||.|+|+.....+ ...+|+|++-....+.++++.+.++|.||...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~V---------------------gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YS 62 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKV---------------------GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYS 62 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCcee---------------------cCCCCeeEEEEEEEEEecCceEEEEeCCCcCC
Confidence 459999999999999999997543332 23679999999999999999999999999755
Q ss_pred ch---H-H--HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FT---V-E--VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~---~-e--~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+. . | +.+++ ...|.+|.|+||.. -.....+.-|+.+.++|+++++|++|..
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 32 2 2 34444 56799999999986 4455556667788999999999999964
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=136.23 Aligned_cols=157 Identities=16% Similarity=0.069 Sum_probs=107.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++|||++..+...... .+..|.++.+.....+.+++ +++.||||||+.+|...+..+++.+|++|+
T Consensus 14 ~~kv~iv-G~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 14 SFKILLI-GDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4788888 9999999999877665554 34455554444444455544 578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHH-HH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQ-MK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~-l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .|.. +. ..+.|+++|+||+|+....... .+....... ... ..++.+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~-~~~~~~~~~----------~~~---~~~~e~ 157 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS-REEGMALAK----------EHG---CLFLEC 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHHH----------HcC---CEEEEE
Confidence 99998644333322 2322 22 2357899999999986432110 011111100 011 246889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIME 178 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877754
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=148.66 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
++.|| |.+.+||+|++.+.+.........|++|++++.+.+.+++.+|+||||||+.+ +...+.+.++.+|+
T Consensus 161 dV~LV-G~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 161 DVGLV-GFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred eEEEE-EcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 56677 99999999997666655555567799999999999999999999999999853 33456777889999
Q ss_pred EEEEEeCCCC-----CchhHH----HHHHHH----------HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccc
Q psy11896 77 AILVLCAVGG-----VQSQTL----TVNRQM----------KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNE 137 (1043)
Q Consensus 77 iIlVvDa~~~-----~~~~~~----~~~~~l----------~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~ 137 (1043)
+|+|+|++.. +..... ++..+. ...++|+|+|+||+|+++.. ...+.+...+. .
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~----~- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELE----A- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHH----H-
Confidence 9999999741 111111 121121 12468999999999996422 22223322221 0
Q ss_pred cccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 138 SLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 138 ~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. ..++++|||+++.|+++|+..+...+..
T Consensus 313 -------~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 313 -------R-GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -------c-CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 1368999999999999999999877653
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-12 Score=130.52 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=73.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+... ... ++ ..++...........+ ..+.+|||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~--------------~~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE--------------TY------DPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc--------------cC------CCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999997321 110 00 0000000011122333 458899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+.........| ..+.. .+.|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9998888899999999999999875433332222 22221 467999999999975
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=129.42 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=75.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
++|+++|++|+|||||+++++...... . +. .++.......+.+. ++.+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--------~-----~~---------~t~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--------S-----YY---------PTIENTFSKIIRYKGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--------c-----cC---------cchhhhEEEEEEECCEEEEEEEEECCCh
Confidence 689999999999999999998322100 0 00 00000011122333 356899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.+|......++..+|++++|+|..+....+.... +.... ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 9998888888999999999999997654443333 23222 2467999999999975
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-13 Score=141.55 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=113.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcC-ceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG-ITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.|+++|++|+|||||++.|+...... . .....| +++ ...++.+++++||||+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~-------------~------~~~~~g~i~i------~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------N------ISDIKGPITV------VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccC-------------c------cccccccEEE------EecCCceEEEEeCCchH
Confidence 679999999999999999997432110 0 011223 221 22367889999999964
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEE-EEeccCCCCCC--HHHHHHHHHHHhCCCce---
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA-FINKLDRLGAD--PYRVINQMRQKVGHNAA--- 352 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~iv-viNKiD~~~~~--~~~~~~~i~~~l~~~~~--- 352 (1043)
..+...+..+|.+++|+|+..|...++..++..+...++|.++ |+||+|+.... .++..+++++.+.....
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 6677788999999999999999999999999999888999655 99999997432 34555666554442211
Q ss_pred ---------eeeeccccCCCeeEEEEcccceeEeecCC
Q psy11896 353 ---------FLQIPIGLGSETKGIIDLIQRKAIYFEGP 381 (1043)
Q Consensus 353 ---------~~~~p~~~~~~~~g~~dl~~~~~~~~~~~ 381 (1043)
+.++|..++..+.+.+++++.+++.|...
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~ 209 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNS 209 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecC
Confidence 34567777788889999999999999643
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=132.62 Aligned_cols=147 Identities=17% Similarity=0.108 Sum_probs=102.5
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcc-------hHHHHHHHhhhcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD-------FTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------~~~~~~~~~~~aD~iIlVv 81 (1043)
|.+++||+|...............+++|+++....+.++ +.++.+|||||+.+ +...+...++.+|++++|+
T Consensus 3 G~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~ 82 (176)
T cd01881 3 GLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVV 82 (176)
T ss_pred CCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEE
Confidence 889999999976666655555667899999998888888 89999999999843 3335567788999999999
Q ss_pred eCCCCC------chhHH-HHHHHHH----------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 82 CAVGGV------QSQTL-TVNRQMK----------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 82 Da~~~~------~~~~~-~~~~~l~----------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|+++.. ..... .....+. ..++|+++|+||+|+.......... .... ..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~-------------~~ 148 (176)
T cd01881 83 DASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VREL-------------AL 148 (176)
T ss_pred eccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHH-------------hc
Confidence 998652 12111 1222221 1478999999999996532211110 0010 01
Q ss_pred ccceeeeeeeecccCCcchHHHHHHh
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
....+++++||+++.|++++++.+..
T Consensus 149 ~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 149 EEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12245799999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=129.01 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=108.2
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~~ 73 (1043)
+|+.++ |..++||++...+...... .....+++|.+.....+.+.+.++++|||||+.++.. .....+..
T Consensus 2 ~~i~l~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIV-GKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 466677 9999999998655544432 2345789999988888888888999999999876432 24457789
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++..........+.. ..++|+++|+||+|+...... . ......+++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~----------------~~~~~~~~~~~ 137 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----L----------------SLLAGKPIIAI 137 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----c----------------cccCCCceEEE
Confidence 999999999997666655555444 467999999999998753321 0 11123467899
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||+++.|+++|++.+...
T Consensus 138 Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 138 SAKTGEGLDELKEALLEL 155 (157)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-12 Score=128.88 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=72.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
+|+++|.+|+|||||+++++... .. + ++.+... +.......+.++...+.+|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~-------~-------~~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI-------G-------EYDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc-------c-------ccCCChH----HhceEEEEECCEEEEEEEEECCCCccc
Confidence 48999999999999999997311 10 0 0000000 11111222333345788999999985
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH-----hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK-----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~-----~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++|+|+|+.+....+....| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 456677888999999999999976443333322 2222 2378999999999974
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=129.17 Aligned_cols=152 Identities=15% Similarity=0.074 Sum_probs=105.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||+|...+...+.......+.++.......+...+ ..+.+|||||+..+...+..+++.+|++++|
T Consensus 1 ~ki~i~-G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLL-GEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 688888 9999999999877776666555555554554444555444 3699999999999888888889999999999
Q ss_pred EeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|++++-..+....+ ..+. ..++|+++++||+|+..... .+...++...+ ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s 143 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV----------------GAKHFETS 143 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc----------------CCEEEEEe
Confidence 999865433332222 2222 23689999999999864221 11112222111 13468899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
+++|.|++++++.+.+.
T Consensus 144 ~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 144 AKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=125.54 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+.... ... .+..+.......+.++ .+.+++||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE---------------------YDPTIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC---------------------cCCChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 589999999999999999974321 000 0011111112223333 4678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
++.......++.+|++++|+|........ ....+..... .+.|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 99888888999999999999988643222 2222322221 4789999999999763
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=132.69 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=99.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcc-hHHHHHHHhhhcCEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVD-FTVEVERALRVLDGAILV 80 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~-~~~~~~~~~~~aD~iIlV 80 (1043)
|+.++ |++++||+|+..+...+.+..+..+.+. ......+..++ .++.+|||||+.. +...+..+++.+|++|+|
T Consensus 1 ki~vv-G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVL-GASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEE-CCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 56677 9999999999877776666555545432 22233334444 4688999999985 455677889999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH-----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK-----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~-----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+.+... ....+. ..++|+++|+||+|+..... .+....+.+. .. .+++.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~e 142 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-------------LG---CLFFE 142 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-------------cC---CEEEE
Confidence 9998654433222 222222 23789999999999853211 1111122111 11 25688
Q ss_pred eeecccC-CcchHHHHHHhh
Q psy11896 153 ISAHIDS-GKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~-Gi~~L~~~l~~~ 171 (1043)
+||++|. |++++++.++..
T Consensus 143 ~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 143 VSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred eCCCCCchhHHHHHHHHHHH
Confidence 9999995 999999998754
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=126.01 Aligned_cols=112 Identities=21% Similarity=0.151 Sum_probs=73.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++++.. .... . +.+.. + ........+......+.||||||+..|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~------~--------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIE------K--------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC------C--------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccc
Confidence 6999999999999999999732 1110 0 00000 0 011111112222346889999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|..+...-+....| ..... .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88888888999999999999874332222222 22222 478999999999974
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-13 Score=135.59 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=104.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...++..+.+..+..| ++.+.....+..++ .++.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~k~~i~-G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLV-GDGAVGKTSLIVSYTTNGYPTEYVP-TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 578888 9999999999888877777666554 33333333444444 4788999999999888888889999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+.+.. ..+..+.. .++|+++++||+|+..... . ...+...-...+.. ..+. ......+++++
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~-~~~~~~~~~~~v~~~~~~~~a--~~~~~~~~~e~ 154 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN-V-LIQLARYGEKPVSQSRAKALA--EKIGACEYIEC 154 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-H-HHHHhhcCCCCcCHHHHHHHH--HHhCCCeEEEE
Confidence 999865444332 22333333 3689999999999864211 0 00000000000000 0000 01122367899
Q ss_pred eecccCCcchHHHHHH
Q psy11896 154 SAHIDSGKTTLTERIL 169 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~ 169 (1043)
||++|.|++++++.+.
T Consensus 155 Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 155 SALTQKNLKEVFDTAI 170 (173)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 9999999999998775
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.1e-12 Score=127.45 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=73.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++++... .. .+....+........+..+ ...+++|||||+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FD-------------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-------------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999997321 10 0001111111111223333 3579999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHhc----CCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRY----DVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+.+........-|. ...+. ..|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 99888888899999999999998643333333332 22222 24689999999975
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=133.06 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=87.6
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccC----CcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCcccc--CChh
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNV----PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV--DSNE 772 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l----~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~--~~~~ 772 (1043)
++-.|.+.|. +.+++.++|.+.+... +++++++|++||++|+.+|||+|+||+|++|+|.++..|.. ++..
T Consensus 73 ~~~Iw~fGP~---~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~ 149 (177)
T cd01681 73 ARKIWAFGPD---RTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGG 149 (177)
T ss_pred hCcEEEECCC---CCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCch
Confidence 3345667663 4667899998877655 78999999999999999999999999999999999999985 7889
Q ss_pred hHHHHHHHHHHHHHHHhcccccccccee
Q psy11896 773 ISFILAAHGAMKQAYEEGVWQILEPIMS 800 (1043)
Q Consensus 773 ~~~~~a~~~a~~~a~~~~~~~llEP~~~ 800 (1043)
++++.|+++||++|++++.++||||+|.
T Consensus 150 ~~~~~a~r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 150 GQIIPAARRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEccccC
Confidence 9999999999999999999999999984
|
U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=132.87 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=79.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDt 274 (1043)
+...+|+++|+.|+|||||+++|+...-.. +....+........+.++ ...++||||
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~---------------------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt 68 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---------------------ESKSTIGVEFATRTLQVEGKTVKAQIWDT 68 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 356799999999999999999997321100 011112222222233333 358999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++|+|+|..+....+....| ..+.. .++|+++|.||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 99999988888889999999999999865443333333 22222 478999999999974
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=146.58 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=110.2
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |.+.+||+|.+.+.+.........|++|+.++.+.+.+. +.+|+||||||+.. +...+.+.++.+|
T Consensus 160 dVglV-G~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLV-GFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEE-cCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 45566 999999999876665554445567999999999999887 78999999999853 4456677788899
Q ss_pred EEEEEEeCCCC----CchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVGG----VQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~~----~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++|+|+|++.. +......+...+.. .++|+++|+||+|+... ...++.+.+.+ .
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l---------------~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL---------------G 301 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh---------------C
Confidence 99999999742 11222333334433 47899999999998532 22223333321 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+++++||+++.|+++|++.+...+..
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999877654
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=126.44 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=74.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-ecCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-WKDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDtPG~~d 279 (1043)
+|+++|.+|+|||||+++|......... . .....|.........+. .....+.+|||||+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------N---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------c---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 6899999999999999999732111100 0 00011111111112221 2346899999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|..+.........| ..... .+.|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 888888889999999999999864332222223 22222 358999999999975
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=133.47 Aligned_cols=153 Identities=8% Similarity=-0.070 Sum_probs=106.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
|+.++ |+.++||||....+..+.++.+..|.+..+... .+... ...+.+|||||+.++...+..+++.+|++|+|
T Consensus 2 ki~vv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 2 KIVVV-GDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred eEEEE-CCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 67777 999999999998888888776665544443322 23333 34799999999999988888899999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCH------HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADP------YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|+++..+.+... .|. .+. ..++|+++|+||+|+..... ....+++... ....++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 144 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK---------------QGAFAY 144 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH---------------cCCcEE
Confidence 9998654433321 122 222 23689999999999864220 1111111111 112256
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+||++|.|++++++.+...+-
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999886654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=135.52 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=104.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
+++.++ |..++||+|+....+.+.......++.|+++....+.+.+. .+.+|||||+.+. .......+..
T Consensus 42 ~~I~ii-G~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 42 PTVALV-GYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CeEEEE-CCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 566777 99999999998776666655566678888888877777665 8999999998431 1112334678
Q ss_pred cCEEEEEEeCCCCCchhHHH-HHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~-~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|++++|+|++++....... ....+ ...++|+++|+||+|+....... ..+ .....+
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~-------------~~~~~~ 181 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL-------------EAGRPD 181 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh-------------hcCCCc
Confidence 99999999998765444332 22223 23468999999999986532211 111 012246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|++++++.+...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 7899999999999999988753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=142.13 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=93.1
Q ss_pred HhhhcCEEEEEEeCCCCCchhH--HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~--~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.+.++|.+++|+|+++...... ...+..+...++|+++|+||+|+.. +.+. ...+.+.+. ...
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~-~~~~~~~~~------------~~g- 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEE-ARELLALYR------------AIG- 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHH-HHHHHHHHH------------HCC-
Confidence 3589999999999975432222 2333445667899999999999963 2221 122222111 011
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCce
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 227 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~ 227 (1043)
.+++++||+++.|+++|++.+. + +.++++|++|+|||||+|+|+.....
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~---g--------------------------k~~~~~G~sgvGKStlin~l~~~~~~-- 190 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLA---G--------------------------KVTVLAGQSGVGKSTLLNALAPDLEL-- 190 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhcc---C--------------------------ceEEEECCCCCCHHHHHHHHhCCcCC--
Confidence 3678999999999999887652 1 35899999999999999999843321
Q ss_pred eeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 228 EMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 228 ~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
..+.+... ..+.+.+|.......+.. ...++||||...
T Consensus 191 ~~g~v~~~-----------~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 191 KTGEISEA-----------LGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred CCcceecc-----------CCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 11222111 112233554444333322 247899999764
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=134.98 Aligned_cols=164 Identities=9% Similarity=-0.029 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++|||+....+..+.++.+..|.+..+.. ..+..++ ..+.||||+|+..|...+..+++.+|++|+
T Consensus 1 ~~KIvvv-Gd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 1 RCKIVVV-GDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 4789888 99999999999999999998888886643332 3445544 468999999999999988899999999999
Q ss_pred EEeCCCCCchhHH-HHHHH-HH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~-l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++.-+.... ..|.. +. ..+.|+++|+||+|+.... . ....+.+.....+ ....+.. .....+.+.
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~-~~~~~~~~~~~pIs~e~g~~~ak--~~~~~~y~E 154 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-A-TLRELSKQRLIPVTHEQGTVLAK--QVGAVSYVE 154 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-h-hhhhhhhccCCccCHHHHHHHHH--HcCCCEEEE
Confidence 9999875433332 22322 22 2468999999999985421 1 1111111000000 0000110 112235577
Q ss_pred eeecccCC-cchHHHHHHhh
Q psy11896 153 ISAHIDSG-KTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~G-i~~L~~~l~~~ 171 (1043)
+||+++.| ++++|+.....
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHH
Confidence 99999985 99999988764
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=132.42 Aligned_cols=154 Identities=16% Similarity=0.064 Sum_probs=107.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+++..+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+...++.+|++|+|
T Consensus 1 ~ki~v~-G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVII-GDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 578888 9999999999988888887765555555544444455444 4689999999999998999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++.-+......| ..+.. .++|+++++||+|+.+... ......+... . . .+++.+|
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-------------~--~-~~~~evS 143 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-------------L--N-IPFFETS 143 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH-------------c--C-CeEEEEe
Confidence 999864332222211 22222 3578999999999864211 1111111111 1 1 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+....-
T Consensus 144 a~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 144 AKQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998877654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-12 Score=127.50 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=112.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++.......+..+.+..+++|.+.....+..++ +.+.+|||||+.++...+....+.++.++.
T Consensus 1 ~~ki~~~-G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIV-GDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3788899 9999999999888888888888999999998887788888 789999999999998888888888888888
Q ss_pred EEeCCCCCc-------hhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQ-------SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~-------~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
++|....+. .....+...+. .+.|+++++||+|+...... ......+. .....++++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~---~~~~~~~~------------~~~~~~~~~ 143 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLK---THVAFLFA------------KLNGEPIIP 143 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhh---HHHHHHHh------------hccCCceEE
Confidence 888764311 11122222222 27899999999999653321 22222211 112235799
Q ss_pred eeecccCCcchHHHHHH
Q psy11896 153 ISAHIDSGKTTLTERIL 169 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~ 169 (1043)
+||++|.|++++++.+.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999988763
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-13 Score=145.87 Aligned_cols=112 Identities=52% Similarity=0.806 Sum_probs=105.5
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
.-.+++|.+..|+++|+|+......+.|+++++++||||||.+|.-++.+.++..|+++.|+|++.|+..|+..+|++..
T Consensus 72 dgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad 151 (753)
T KOG0464|consen 72 DGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 151 (753)
T ss_pred CCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++++|.+.++||||...++.+...+.++++++
T Consensus 152 k~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 152 KFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 99999999999999988888877888888764
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=126.72 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=78.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..++|||||+.++... ... .+....++.......+..++ ..+++||||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~--~~~-------------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~ 63 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG--STE-------------------SPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCC-------------------CCCCCcceeEEEEEEEEECCEEEEEEEEeCC
Confidence 4578999999999999999999631 110 00011122222222233344 688999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++|+|+|.....+-+...-| .++.+ .+.|+++|.||+|+.
T Consensus 64 G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999998888888999999999999975444444333 22322 467999999999975
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=148.54 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~ 72 (1043)
.+|+.++ |.+++||+|...+.+.... .....||+|++.....+.+++..+.+|||||+.++.. ....+++
T Consensus 203 g~kVvIv-G~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 203 GFKLAIV-GSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3678888 9999999999777665432 3456799999999999999999999999999975432 2356788
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++++|+|++.+.+..+. .+..+...++|+++|+||+|+...+. +.+.+.+ . .+++.
T Consensus 282 ~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~~~-------------~---~~~~~ 340 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVSSK-------------V---LNSSN 340 (442)
T ss_pred hCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhhhc-------------C---CceEE
Confidence 99999999999876655544 44455556899999999999964321 1111111 1 24578
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++ .|++++++.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHH
Confidence 99998 699999888876554
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=147.06 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=108.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
.++.++ |.+.+||+|.+.+.+.........+++|+++....+.+.+. .+.+|||||+.+. ...+...++.
T Consensus 198 p~ValV-G~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLV-GYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 456677 99999999998877776666778899999999988888765 8999999998431 2234566789
Q ss_pred cCEEEEEEeCCCCCchhHHH----HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT----VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~----~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
||++|+|+|++++....... ++..+...++|+++|+||+|+...... . +... . . ....
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~---~~~~-~-----------~--~~~~ 338 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R---IDRD-E-----------E--NKPI 338 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H---HHHH-h-----------c--CCCc
Confidence 99999999998765444332 233333346899999999998642111 1 1100 0 0 1112
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++.+||++|.|+++|++.+...+
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998765
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=136.32 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=106.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|....+....++.+..|.+..... ..+..++ ..+.||||||+.++...+..+++.+|++|+|+
T Consensus 2 kiviv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 2 KVVVL-GDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 67777 99999999999888888887776665543322 2233333 57999999999998877778899999999999
Q ss_pred eCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHH-HHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYR-VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|.++.-+.+... .+..+.. .+.|+++|+||+|+....... .........-..-....+. ......+++.+||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA--KRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEccCC
Confidence 988654443322 2223322 368999999999996532211 0000000000000000000 01122356889999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+....
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999987654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=152.29 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=79.2
Q ss_pred EeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHH--
Q psy11896 206 AHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE-- 283 (1043)
Q Consensus 206 G~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e-- 283 (1043)
|.+|+|||||+|+|+.... .....+|+|++.....+.++++.++++||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~ 59 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---------------------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch
Confidence 7899999999999963311 02236789998888888899999999999999887542
Q ss_pred ---HHH-Hh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 284 ---VER-AL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 284 ---~~~-~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+ .+ +.+|++++|+|+... ........++.+.++|+++|+||+|+.
T Consensus 60 ~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 60 EEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 222 22 468999999999873 233444556667899999999999974
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=131.20 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=74.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG~ 277 (1043)
+|+++|..|+|||||+++|+... .. .+..+.++.+.....+.+. ...++||||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~-------------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FG-------------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC-------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 68999999999999999996321 00 0111112222222233332 468999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++|+|+|+.+.-.......| ..+.+ .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 88888888889999999999999864333322223 22222 235789999999985
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=129.33 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=73.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+...-.... .....|.++.... +..++ ..+++|||||..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~------------------~~~t~~~~~~~~~--~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP------------------YQNTIGAAFVAKR--MVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC------------------cccceeeEEEEEE--EEECCEEEEEEEEECCCch
Confidence 6999999999999999999732110000 0011121221222 33333 467799999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+....+....| ..... .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 8877777778899999999999874333222222 22222 368999999999975
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-12 Score=133.57 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=78.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|..|+|||||+++++... ... ......|+++.........+...+.+|||||+.
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~--f~~-----------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC--CCC-----------------ccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 4689999999999999999986321 100 011122333332222222334689999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH--hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~--~~~~p~ivviNKiD~~ 332 (1043)
+|..-....++.+|++|+|+|..+....+...-|.. .. ..++|+++|.||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 998777778899999999999997655444444422 11 2468999999999974
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=114.75 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=113.6
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
.+.++ |.+..||+++...-....+.+.--| |+..+...++-++..+.+||.||+..|...|..+.+.++++++|+|+
T Consensus 22 el~lv-GLq~sGKtt~Vn~ia~g~~~edmip--tvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 22 ELSLV-GLQNSGKTTLVNVIARGQYLEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred eEEEE-eeccCCcceEEEEEeeccchhhhcc--cccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 45566 9999999999766666444444444 67777777887888999999999999999999999999999999999
Q ss_pred CCC--CchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGG--VQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~--~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
.+. ++....++...+.+ .++|++++.||+|++++-.. ..+.++++ +..-. -.-..++.||++..
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---~~li~rmg-------L~sit-dREvcC~siScke~ 167 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---IALIERMG-------LSSIT-DREVCCFSISCKEK 167 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---HHHHHHhC-------ccccc-cceEEEEEEEEcCC
Confidence 862 23333444444432 58999999999999876332 22333332 22111 12246799999999
Q ss_pred CCcchHHHHHHhhcc
Q psy11896 159 SGKTTLTERILFYTG 173 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~l~ 173 (1043)
.|++.+.+++.+...
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999998876543
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=129.71 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=103.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+|...+...+.+..+..|. +.+.....+.+++ ..+.+|||||+.+|...+..+++.+|++++
T Consensus 1 ~~ki~li-G~~~~GKTsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVL-GAGGVGKSALTVQFVQNVFIESYDPT-IEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCc-chheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 4788888 99999999998777766665444442 2222233444444 478999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHH----HhcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l----~~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++....+.... ...+ ...++|+++++||+|+...... .....+.+. ....++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 143 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ---------------WGNVPFYE 143 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH---------------cCCceEEE
Confidence 999886433222221 1212 2347899999999998643211 111111111 11135688
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 144 ~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 144 TSARKRTNVDEVFIDLVR 161 (168)
T ss_pred eeCCCCCCHHHHHHHHHH
Confidence 999999999999998874
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-12 Score=127.89 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=73.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||++++....- .. . +. ..........+..+ .+.+.+|||||+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~------~--------~~------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PE------E--------YV------PTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------C--------CC------CceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999973211 00 0 00 00000111122233 3568899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHH--hcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~--~~~~p~ivviNKiD~~~ 333 (1043)
+|.......++.+|++++|+|..+.-..+... .| ..+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 60 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 98877777788999999999998754433221 22 2222 35789999999999864
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=141.83 Aligned_cols=158 Identities=23% Similarity=0.190 Sum_probs=101.4
Q ss_pred HHHHHhhhcC-EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCC
Q psy11896 66 EVERALRVLD-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 66 ~~~~~~~~aD-~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
.+...+..+| .+++|+|+.+........+.+.. .++|+++|+||+|+...+ .++..+.+.... +.
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~----k~------ 128 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA----KE------ 128 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH----Hh------
Confidence 3666777667 89999999875544444443332 268999999999996432 222211211111 11
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
....+..++.+||++|.|+++|++.+..+.. -+++.++|.+|+|||||+|+|+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~-------------------------~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYRE-------------------------GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhcC-------------------------CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 1122235788999999999999999875421 146999999999999999999853
Q ss_pred cCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 223 TGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..... +.......+|+|.......+. ....++||||..
T Consensus 184 ~~~~~---------------~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~ 221 (365)
T PRK13796 184 ITGEK---------------DVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGII 221 (365)
T ss_pred ccCcc---------------ceEEecCCCCccceeEEEEcC---CCcEEEECCCcc
Confidence 31100 001134478888876655442 225799999964
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=157.41 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=116.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH----------HHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE----------VERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~----------~~~~~ 71 (1043)
.+|+.++ |...+||||...+.+..+......||+|++...+.+.+++.++++|||||+.++... ...++
T Consensus 3 ~~~IaLv-G~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLI-GNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3567777 999999999977776655566677999999999999999999999999999875421 22232
Q ss_pred --hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 72 --RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 72 --~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
..+|++++|+|+++. ++....+.++.+.++|+++++||+|+.+. ......+.+++.++ .
T Consensus 82 ~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG----------------~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG----------------C 143 (772)
T ss_pred hccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC----------------C
Confidence 378999999999863 34455667778889999999999998642 32233444444332 3
Q ss_pred eeeeeeecccCCcchHHHHHHhhc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++++||++|+|++++++.+....
T Consensus 144 pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhh
Confidence 679999999999999999987654
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=126.80 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=76.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|..|+|||||+.+++... ... .+ ...-+... ...+.+++ ..+++|||||.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~--f~~--------------~~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPD--------------YH---DPTIEDAY---KQQARIDNEPALLDILDTAGQ 60 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCC--------------Cc---CCcccceE---EEEEEECCEEEEEEEEeCCCc
Confidence 469999999999999999997321 100 00 00001011 11123333 57899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|......+++.+|++|+|+|..+..+.+...-| ... ...++|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 99988888899999999999999986655554422 122 22468999999999975
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-12 Score=126.91 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=106.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe--cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||+|+..+......+.+..+.++.+.....+.. ....+.+|||||+..+...+...++.+|++++|
T Consensus 1 ~~i~~~-G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLI-GDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 467777 99999999998887777777665565555555455554 346799999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+|+++....... .....+.. .++|+++++||+|+..... ...+.+.+... ....+++.+||+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~sa~ 145 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ-VSTEEAQQFAK-------------ENGLLFFETSAK 145 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc-ccHHHHHHHHH-------------HcCCeEEEEecC
Confidence 999863322222 22223333 2589999999999952111 11122222211 012467899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
++.|++++++.+.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-12 Score=124.74 Aligned_cols=152 Identities=12% Similarity=0.083 Sum_probs=105.8
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |..++||+|.........+..+..|.+..+. ..+..++..+.+|||||+.++...+..+++.+|++++|+|++
T Consensus 2 i~i~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLV-GLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEE-cCCCCCHHHHHHHHccCCCCcCccCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 4556 9999999999888887777777777555443 345667789999999999999999999999999999999998
Q ss_pred CCCchh-HHHHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC
Q psy11896 85 GGVQSQ-TLTVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS 159 (1043)
Q Consensus 85 ~~~~~~-~~~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~ 159 (1043)
+..... ....+..+ . ..++|+++|+||+|+.+.... +.+...+. +.... ....+++++|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~-------~~~~~-~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMN-------LKSIT-DREVSCYSISCKEKT 147 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhC-------ccccc-CCceEEEEEEeccCC
Confidence 532211 11122222 1 247899999999998654221 11111111 11101 122467899999999
Q ss_pred CcchHHHHHHh
Q psy11896 160 GKTTLTERILF 170 (1043)
Q Consensus 160 Gi~~L~~~l~~ 170 (1043)
|++++++.+..
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-12 Score=132.92 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=108.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+++........+.....+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 6 ~~kiviv-G~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 6 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4788888 9999999999888777777666666555555455555555 468899999999999889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++.-+......| ..+. ..++|+++++||+|+.... ..+..+.+.+. .. .+++.+
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~e~ 148 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-------------HG---LIFMEA 148 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH-------------cC---CEEEEE
Confidence 9999864333332211 2122 2368999999999986421 11111122111 11 256889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||+++.|++++++.+...+
T Consensus 149 Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998887554
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=133.52 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=72.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++++... ... . ...++.+.....+..++ +.++||||+|+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~------~--------------y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE------Q--------------YTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC------C--------------CCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 69999999999999999997321 100 0 00000011111223333 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh------------cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR------------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~------------~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+...-+... .+.+... .++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 60 PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 99877677788999999999998743322222 2222211 368999999999985
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=129.71 Aligned_cols=109 Identities=23% Similarity=0.173 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... . .++ ..|+........++.+.+.+|||||+..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f---------------~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--F---------------KDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQF 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--C---------------CCC-------CCccceEEEEEEeeEEEEEEEeCCCcccc
Confidence 68999999999999999997321 0 000 01222222333456778999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH---hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~---~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++|+|+|+.+......... |..+. ..++|+++|.||+|+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 8888888999999999999997543333322 22222 24579999999999864
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-12 Score=131.11 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=104.4
Q ss_pred ccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.|+.++ |.+++||+|...+.+.+.+.. +..+.+........+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~ki~vv-G~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVML-GKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 377888 999999999988888777654 23332222222334555554 57799999999888888888999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCH-H-HH-HHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADP-Y-RV-INQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~-~-~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+..... . .. .+.+.+... .. ..+++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----------~~---~~~~~~~ 146 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD----------EI---KAQHFET 146 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHH----------Hc---CCeEEEE
Confidence 99998643332222 2233332 2689999999999864221 0 00 111111100 01 1356889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+....-
T Consensus 147 Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 147 SSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=128.05 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=75.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... .. . ...+..|.+.......+..+...+.+|||||+.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~---------------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~ 62 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FS---------------E--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF 62 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC---------------C--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 69999999999999999997221 10 0 00111122222222222223457889999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---hcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|..+.-.......|. ... ....|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 888888999999999999998754333332332 222 2357899999999976
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=131.84 Aligned_cols=154 Identities=17% Similarity=0.090 Sum_probs=110.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++|||+.......+.... ..-|...+...+.+++..+.+||.+|+..+...|..+++.+|++|||+|
T Consensus 15 ~~ilil-Gl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvD 90 (175)
T PF00025_consen 15 IKILIL-GLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVD 90 (175)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEE
T ss_pred EEEEEE-CCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEe
Confidence 566666 999999999977665544332 3336677778888899999999999999999999999999999999999
Q ss_pred CCCCC--chhHHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGV--QSQTLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~--~~~~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++.- .+....+...+. ..++|+++++||.|++++... +++...+. +..........++++||.+
T Consensus 91 ssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~-------l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 91 SSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLG-------LEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTT-------GGGTTSSSCEEEEEEBTTT
T ss_pred cccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhh-------hhhcccCCceEEEeeeccC
Confidence 98532 222222333332 247899999999999765332 23333331 1111112345789999999
Q ss_pred cCCcchHHHHHHh
Q psy11896 158 DSGKTTLTERILF 170 (1043)
Q Consensus 158 g~Gi~~L~~~l~~ 170 (1043)
|+|+++.+++|.+
T Consensus 161 g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 161 GEGVDEGLEWLIE 173 (175)
T ss_dssp TBTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 9999999888864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=126.27 Aligned_cols=112 Identities=17% Similarity=0.073 Sum_probs=73.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEe--eeeEEEEecCeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ--SAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~--~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+...-... ...+... ............+.+|||||+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTE----------------------YVPTVFDNYSATVTVDGKQVNLGLWDTAGQE 59 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----------------------CCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 689999999999999999974321000 0000011 1111222335679999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHH--hcCCCeEEEEeccCCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~--~~~~p~ivviNKiD~~~~ 334 (1043)
+|.......++.+|++++|+|+.+....+.. ..| .... ..++|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 60 EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 8866666667899999999999864332222 112 2222 235899999999998743
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=123.47 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.+++++ |..++|||+..+..-+.....- .| |+..+...+++.+.+|.+||..|+.+++..|..|+++.+++|||+|
T Consensus 18 ~~Ilml-GLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvD 93 (181)
T KOG0070|consen 18 MRILMV-GLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVD 93 (181)
T ss_pred EEEEEE-eccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEe
Confidence 467777 9999999999777666554322 33 8888888999999999999999999999999999999999999999
Q ss_pred CCCC--CchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGG--VQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~--~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++. +.+...++.+.+.. .+.|++++.||.|++++-.. .++.+.++ +..... ..+.+.+++|.+
T Consensus 94 S~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~---~ei~~~L~-------l~~l~~-~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 94 SSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSA---AEITNKLG-------LHSLRS-RNWHIQSTCAIS 162 (181)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCH---HHHHhHhh-------hhccCC-CCcEEeeccccc
Confidence 9863 33444455555543 36799999999999875321 22333221 111111 334678899999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|+|+.+-++++...+
T Consensus 163 G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNL 177 (181)
T ss_pred cccHHHHHHHHHHHH
Confidence 999988888876554
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=130.62 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCC--hhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----------chHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS--MELERQRGITIQSAATYTLWKDHNINIIDTPGHV----------DFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~--~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----------~~~~~~~~ 69 (1043)
+.|+.++ |..++||+|...+.+.+. ......+|+|+......+ +.++.||||||+. ++......
T Consensus 24 ~~~v~iv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 24 GPEIAFA-GRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 3577788 999999999977777653 344567788877654332 4789999999963 23333344
Q ss_pred Hhhh---cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~---aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++. ++++++|+|++.+....+..+..++...++|+++++||+|+.+.. .++..+.+...+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------------- 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------------- 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-------------
Confidence 4444 468899999887777666667777777899999999999986532 22233334333220
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||+++.|++++++.+...+.
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 0246789999999999999999987654
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-12 Score=130.46 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=101.4
Q ss_pred eeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 8 IHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 8 ~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+.|+.++||+|+...+..+.++.+..+.+.... ...+..++. .+.+|||||+.++......+++.+|++|+|+|.++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 449999999999888888777766665443222 223444443 69999999999988888888999999999999986
Q ss_pred CCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeeeeeccc
Q psy11896 86 GVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 86 ~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
.-+.+... ....+.. .++|+++|+||+|+..... . .+.+...-...+.. ..+. ......+++++||++|
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~-~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS-T-LRELSKQKQEPVTYEQGEALA--KRIGAVKYLECSALTQ 157 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh-h-hhhhhcccCCCccHHHHHHHH--HHcCCcEEEEecCCCC
Confidence 43333221 2222322 3789999999999864211 0 01111000000000 0000 0112235688999999
Q ss_pred CCcchHHHHHHhh
Q psy11896 159 SGKTTLTERILFY 171 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~ 171 (1043)
.|++++++.+...
T Consensus 158 ~~v~~lf~~l~~~ 170 (174)
T smart00174 158 EGVREVFEEAIRA 170 (174)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-12 Score=139.58 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=156.1
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-- 87 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-- 87 (1043)
.....++.||+..|++|+..+|+..|.|+.....+|+....+|++.|+|||..|...++....+||..++|+.++.+-
T Consensus 117 eake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe 196 (501)
T KOG0459|consen 117 EAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 196 (501)
T ss_pred HHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred -----chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 88 -----QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 88 -----~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
..|+.++...++..++. .|+++||||-+..++ .+..++..+.+..+++..++...... ..+|+|+.+|.+
T Consensus 197 tgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~---~f~p~sg~tG~~ 273 (501)
T KOG0459|consen 197 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDK---HFVPVSGLTGAN 273 (501)
T ss_pred cccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCc---eeeecccccccc
Confidence 34777777777777765 889999999875432 34567777777777776565544433 347899999999
Q ss_pred cchHHH-HHHhhccc-cccccccccccccccc-cCCCCccc-eee--EEEEEeecCCcccHHhHHh
Q psy11896 161 KTTLTE-RILFYTGR-ISEMHETSRWISNESL-SEHKPIEY-IRN--IGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 161 i~~L~~-~l~~~l~~-~~~~~~~~~~~~~~~~-~~~~~~~~-ir~--i~ivG~~~~GKTTL~~~Ll 220 (1043)
+.+..+ ...||.++ +.++++....+..... +.+.+... .+- -.+.|..-||+-+.-..|+
T Consensus 274 ~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lv 339 (501)
T KOG0459|consen 274 VKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYKDMGTVVGGKVESGSIKKGQQLV 339 (501)
T ss_pred hhhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhccccceEEEEEecccceecCCeEE
Confidence 988874 67788777 6677776443333322 22222221 122 2467888888766655554
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=124.66 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=75.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEecC--eeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDtPG 276 (1043)
.+|+++|..|+|||||+.++.... ... .+ . .|+... ...+..++ ..++||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~--------------~~-----~--pt~~~~~~~~~~~~~~~~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS--------------EY-----V--PTVFDNYAVTVMIGGEPYTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CC-----C--CceeeeeEEEEEECCEEEEEEEEECCC
Confidence 469999999999999999997321 100 00 0 011111 11233444 6788999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHH-HHH--hcCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNR-QMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~-~~~--~~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++|+|+|..+...-+.. ..|. ... ..++|+++|.||+|+..
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 59 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred ccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999987777788999999999999875444333 2342 222 23689999999999853
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=118.15 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=81.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|+... ... .....+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~------------------~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAK------------------VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSE------------------ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc--ccc------------------ccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 58999999999999999998422 111 1224456666655667788999999999997652
Q ss_pred ---------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 281 ---------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 281 ---------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
...+.+.+..+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 61 ESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223555568999999999988855566677777775 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=128.34 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=77.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
+...+|+++|+.|+|||||+++|+...-... + ...-+.+.......+......+++|||||
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~----------------~---~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G 64 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------H---DLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCC----------------C---CCCccceEEEEEEEECCEEEEEEEEeCCC
Confidence 3457899999999999999999973211000 0 00112222222222222235688999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+...-..+....|.. .. ..++|++++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 99998888888899999999999987443333322321 22 2468999999999975
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-12 Score=126.32 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=89.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----chHHHHHHHhhhcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV----DFTVEVERALRVLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----~~~~~~~~~~~~aD~iI 78 (1043)
+|+.++ |++++||+|...+...+.+. .. .|. .+.+.. .+|||||+. .+...+...++.+|+++
T Consensus 1 ~kv~li-G~~~vGKSsL~~~l~~~~~~--~~--~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vi 67 (142)
T TIGR02528 1 KRIMFI-GSVGCGKTTLTQALQGEEIL--YK--KTQ-----AVEYND---GAIDTPGEYVENRRLYSALIVTAADADVIA 67 (142)
T ss_pred CeEEEE-CCCCCCHHHHHHHHcCCccc--cc--cce-----eEEEcC---eeecCchhhhhhHHHHHHHHHHhhcCCEEE
Confidence 578888 99999999997766655432 11 121 223322 789999983 23333445689999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+|+|++++.+.....+.. ..+.|+++|+||+|+.+... ..+...+... . ....+++++||++|
T Consensus 68 lv~d~~~~~s~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~----~--------~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 68 LVQSATDPESRFPPGFAS---IFVKPVIGLVTKIDLAEADV--DIERAKELLE----T--------AGAEPIFEISSVDE 130 (142)
T ss_pred EEecCCCCCcCCChhHHH---hccCCeEEEEEeeccCCccc--CHHHHHHHHH----H--------cCCCcEEEEecCCC
Confidence 999998776655443322 23469999999999864221 1122222111 0 11235688999999
Q ss_pred CCcchHHHHHH
Q psy11896 159 SGKTTLTERIL 169 (1043)
Q Consensus 159 ~Gi~~L~~~l~ 169 (1043)
.|++++++.+.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999998874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-12 Score=127.61 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=97.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|....+..+.++.+..| |.......+..++ ..+.+|||+|+.+ ..+++.+|++++|
T Consensus 1 ~ki~vv-G~~gvGKTsli~~~~~~~f~~~~~~--~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIV-GNLQSGKSALVHRYLTGSYVQLESP--EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhCCCCCCCCC--CccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 577788 9999999999988887777655433 2222234456666 4699999999975 2456889999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|.++.-+.+.. ..+..+.. .++|+++|.||.|+.............+.+.. ......++.+||
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----------~~~~~~~~e~SA 141 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----------DMKRCSYYETCA 141 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----------HhCCCcEEEEec
Confidence 999976554442 22333332 35799999999998431111111111111110 011135578999
Q ss_pred cccCCcchHHHHHHh
Q psy11896 156 HIDSGKTTLTERILF 170 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~ 170 (1043)
++|.|++++++.++.
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-12 Score=116.26 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=112.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+++| |+.++||+-..-.+.-.-+|.-.-..+.++.....++.++. ++.+|||+|+++|.+.+.++++.|+++|+
T Consensus 7 lfkivlv-gnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 7 LFKIVLV-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eEEEEEE-ccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 6899999 99999999998888888888666555555666666666654 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|.+..++.....- ++.+.+ .++--|+|.||+|+.+ ..+.-+++-+.+... .... ...+||
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeefs~~---------qdmy---fletsa 151 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEFSEA---------QDMY---FLETSA 151 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh--hhhhhHHHHHHHHHh---------hhhh---hhhhcc
Confidence 999986665544332 222222 2334679999999864 222333333333210 1112 245999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
+..+|++.|+..++-.+
T Consensus 152 kea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRL 168 (213)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 99999999999887544
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=128.96 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=88.1
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCee-EE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN-IN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~-i~ 270 (1043)
...+...|-.+++||.+|+|||||+++|..+.+.+.. +..+|+........|++.. +.
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~---------------------YaFTTL~P~iG~v~yddf~q~t 247 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH---------------------YAFTTLRPHIGTVNYDDFSQIT 247 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccc---------------------cceeeeccccceeeccccceeE
Confidence 3445556788999999999999999999877665533 4457888877777887764 99
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCCc----chHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGV----QSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g~----~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
+-|.||.+. ...+..+-+..|+..++|||...+. -.+...++..+.. ...|.++|+||||.+
T Consensus 248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 999999654 3334566677799999999999762 2223333444332 356999999999986
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=126.87 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=74.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|..|+|||||+.+++... ... .+ .+..+... ............++||||||+.+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~--------------~~---~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQ--------------VY---EPTVFENY-VHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cc---CCcceeee-EEEEEECCEEEEEEEEECCCChh
Confidence 579999999999999999997321 100 00 00001111 11111222346789999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++|+|+|..+--..+... .| ..+.. .+.|+++|.||+|+...
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 8776666788999999999988754443332 22 22222 37899999999998643
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=128.65 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred EEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHH
Q psy11896 205 SAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 284 (1043)
Q Consensus 205 vG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~ 284 (1043)
+|..|+|||||+.+++.. .... .+ ...-|++.......+..+...++||||||+.+|....
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~--------------~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEK--------------KY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCC--------------CC---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999721 1100 00 0111222222222222235689999999999999988
Q ss_pred HHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh--cCCCeEEEEeccCCC
Q psy11896 285 ERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 285 ~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~ 332 (1043)
..+++.+|++|+|+|.....+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 899999999999999998766555555543 333 478999999999974
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=125.62 Aligned_cols=109 Identities=15% Similarity=-0.009 Sum_probs=72.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEe---cCeeEEEEcCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLW---KDHNINIIDTPG 276 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~---~~~~i~liDtPG 276 (1043)
+|+++|..|+|||||+++|+...-. . ++ . .|+... ...... ....+.+|||||
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~--------------~~-----~--~t~~~~~~~~i~~~~~~~~~l~i~Dt~G 58 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--E--------------EY-----V--PTVFENYVTNIQGPNGKIIELALWDTAG 58 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--C--------------CC-----C--CeeeeeeEEEEEecCCcEEEEEEEECCC
Confidence 6999999999999999999732110 0 00 0 011111 111222 235789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH-H--hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-K--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~-~--~~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+....+... .|... . ..++|+++|.||.|+.
T Consensus 59 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 59 QEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred chhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 9999887777889999999999998754333332 23222 1 2468999999999975
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-12 Score=129.03 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=104.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |..++||||.......+.++.+..|.+.. .....+..++ .++.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~ii-G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 1 RKKLVIV-GDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcccc-ceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 4788888 99999999998888888777665554432 2223444444 468999999999888777778899999999
Q ss_pred EEeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++.-+.... . ....+.. .++|+++|+||+|+..... ..+.+........ ....+. ......+++.
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 154 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMA--NKIGAFGYME 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHH--HHcCCcEEEE
Confidence 9998853222222 1 1122222 3789999999999864221 1111111000000 000000 0112346789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 155 CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred eccccCcCHHHHHHHHHHH
Confidence 9999999999999988743
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-12 Score=152.53 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=108.2
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH------HHHHh--hhcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE------VERAL--RVLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~------~~~~~--~~aD~iIlVv 81 (1043)
|++++||||...+.+..+......||+|++.....+++++.++++|||||+.++... +..++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 678899999988777777777789999999999999999999999999999875432 23333 3789999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
|++.. ++......++.+.++|+++|+||+|+.+.. .....+.+.+.++ .+++++||++|.|
T Consensus 81 Dat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg----------------~pvv~tSA~tg~G 142 (591)
T TIGR00437 81 DASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG----------------VPVVPTSATEGRG 142 (591)
T ss_pred cCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC----------------CCEEEEECCCCCC
Confidence 99852 334444555667899999999999985422 1111233333221 3679999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
++++++.+...
T Consensus 143 i~eL~~~i~~~ 153 (591)
T TIGR00437 143 IERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=119.38 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=111.8
Q ss_pred cceeeeeecccccccCCccccCCChh--------hhh---hcCCccccceEEEEecC-eeEEEEeCCCCcchHHHHHHHh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME--------LER---QRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~--------~e~---~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
|++++ |..++||+++.-+ ..|... ... ++.+|+-.-++...+++ +.+.|+|||||.+|.-+|....
T Consensus 12 KIvv~-G~~~agKtTfv~~-~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~ 89 (187)
T COG2229 12 KIVVI-GPVGAGKTTFVRA-LSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILS 89 (187)
T ss_pred eEEEE-cccccchhhHHHH-hhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHh
Confidence 45555 7777777776433 333331 222 33488888888888876 8999999999999999999999
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcC-CCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~-~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.++++|+++|++.+.......+.+.+...+ +|+++++||.|+.++.+. +..+.+... ....+
T Consensus 90 ~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~---------------~~~~~ 154 (187)
T COG2229 90 RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLE---------------LLSVP 154 (187)
T ss_pred CCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhc---------------cCCCc
Confidence 9999999999999887776677777777777 999999999999876544 222222211 12357
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++++|..++|..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 8999999999987777666543
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=126.83 Aligned_cols=153 Identities=14% Similarity=0.058 Sum_probs=102.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||++........... . ...|.......+.+.+..+.+|||||+.++...+..+++.+|++++|+
T Consensus 14 ~~~v~i~-G~~g~GKStLl~~l~~~~~~-~--~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 14 EPRILIL-GLDNAGKTTILKQLASEDIS-H--ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccEEEEE-ccCCCCHHHHHHHHhcCCCc-c--cCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 3677788 99999999996655543322 1 122333444566677889999999999999888999999999999999
Q ss_pred eCCCCCchhH-HHHH-H---HHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT-LTVN-R---QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~-~~~~-~---~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ...+ . .....++|+++++||+|+.+.... +.+.+.++ +.. ......+++++||+
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~i~~~l~-------~~~-~~~~~~~~~~~Sa~ 158 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA---EEIAEALN-------LHD-LRDRTWHIQACSAK 158 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH---HHHHHHcC-------Ccc-cCCCeEEEEEeECC
Confidence 9985321111 1111 1 122347899999999998653321 22222221 111 11123457899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++++.
T Consensus 159 ~~~gi~~~~~~l~ 171 (173)
T cd04155 159 TGEGLQEGMNWVC 171 (173)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=122.99 Aligned_cols=155 Identities=19% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
.++.++ |..++||+|...+...... .....+++|.......+...+..+.+|||||+... .......+..
T Consensus 4 ~~i~~~-G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIV-GRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 456666 9999999998655443322 23344566766666666666788999999998642 2345567889
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++.........+...+...+.|+++|+||+|+... .... ......+. ......+++++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~-~~~~~~~~-----------~~~~~~~~~~~ 149 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDL-LPLLEKLK-----------ELGPFAEIFPI 149 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHH-HHHHHHHH-----------hccCCCceEEE
Confidence 99999999999775666666667777778999999999998632 2222 22222221 11223567999
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
|++++.|++++++.+...
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999988653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=123.19 Aligned_cols=115 Identities=14% Similarity=-0.012 Sum_probs=75.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
++.+++++|..|+|||||+++++... ... ..+ ...-+..... ..+.+++ ..+.++||+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~--f~~-------------~~~---~~T~~~~~~~--~~~~~~~~~~~l~~~d~~ 62 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS--FSL-------------NAY---SPTIKPRYAV--NTVEVYGQEKYLILREVG 62 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC--CCc-------------ccC---CCccCcceEE--EEEEECCeEEEEEEEecC
Confidence 46889999999999999999997321 100 000 0011111111 1233334 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH-hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK-RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~-~~~~p~ivviNKiD~~ 332 (1043)
|...|......+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 9998877777778999999999999874322221 2222221 2368999999999975
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-12 Score=117.92 Aligned_cols=156 Identities=17% Similarity=0.066 Sum_probs=117.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.|+ ||+++||++....+.-|.+.......+..|.....+..+|. ++.||||+|++.|...+..+++..+++++
T Consensus 8 LfkllIi-gDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 8 LFKLLII-GDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHee-cCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 5788888 99999999999999999999998888888888888887764 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhc---CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVNRQMKRY---DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~l~~~---~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|.|.+.+-+.....-|..-.+. .+|-++|.||.|.+........+. +. |..++ . .+++.+||+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dA-r~----~A~~m------g---ie~FETSaK 152 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDA-RA----FALQM------G---IELFETSAK 152 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHH-HH----HHHhc------C---chheehhhh
Confidence 9999976554443333222222 357889999999875321111111 11 11111 1 345779999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
...|++..+..|....
T Consensus 153 e~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQV 168 (198)
T ss_pred hcccchHHHHHHHHHH
Confidence 9999999999887544
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=131.86 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=98.8
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEe--cCeeEEEEeCCCCcchHHHHHHHhh-hcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLW--KDHNINIIDTPGHVDFTVEVERALR-VLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~-~aD~iI 78 (1043)
||+.++ |+.++||||.......+.+. .+..+....+.....+.. ....+.+|||||+..+.. ..+++ .+|+++
T Consensus 1 ~KI~lv-G~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVML-GSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE--DSCMQYQGDAFV 77 (221)
T ss_pred CEEEEE-CCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHH--hHHhhcCCCEEE
Confidence 688888 99999999998888776664 333332222333333444 346799999999983322 23455 899999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++.-+... ...+..+.. .++|+|+|+||+|+...... +....+... .. .+++
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-------------~~---~~~~ 141 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-------------FD---CKFI 141 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-------------cC---CeEE
Confidence 9999986533322 222333332 36899999999998643211 111111111 11 2468
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+...+.
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987654
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=129.78 Aligned_cols=151 Identities=13% Similarity=0.018 Sum_probs=95.6
Q ss_pred CCccceeeeeecccccccCCccccCC------ChhhhhhcCCcc-ccceE----------EEEecCeeEEEEeCCCCcch
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMD------SMELERQRGITI-QSAAT----------YTLWKDHNINIIDTPGHVDF 63 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d------~~~~e~~~G~T~-~~~~~----------~~~~~~~~i~liDTPG~~~~ 63 (1043)
+.+|+.++ |+.++||++...++..+ .+..+..|.+.. +.... .+.....++.||||+|+.+.
T Consensus 1 ~~~Kiv~v-G~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 1 ETIKCVVV-GDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred CceEEEEE-CCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh
Confidence 35899999 99999999998644332 234455554421 21111 11222457999999999763
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCEEEEEecCCCCCCCH--------------------
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGADP-------------------- 119 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~-~~-~~l~~--~~~piilvlNKiDl~~~~~-------------------- 119 (1043)
....+++.+|++|+|+|.++..+..... .| ..+.. .+.|+++|+||+|+.....
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3345789999999999998755444332 23 22332 3679999999999853210
Q ss_pred -HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 120 -YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 120 -~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+..+.+.+. .. .+.+.+||++|.|++++++.++.
T Consensus 158 ~~~e~~~~a~~-------------~~---~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 158 PPETGRAVAKE-------------LG---IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CHHHHHHHHHH-------------hC---CEEEEcCCCCCCCHHHHHHHHHH
Confidence 0001111111 11 24577999999999999998874
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-12 Score=129.11 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.++.+..|.+. +.....+..++ +.+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~i~-G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVV-GDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 578888 9999999999888877777655555332 23233444554 3578999999999888888889999999999
Q ss_pred EeCCCCCchhHHH--HHHHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT--VNRQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~--~~~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|..+.-+.+... ....+. ..++|+++|+||+|+.+.... ...+.......+.. ..+. ......+++.+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~ 154 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKT--LARLNDMKEKPVTVEQGQKLA--KEIGAHCYVEC 154 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhh--HHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEe
Confidence 9998654333221 222232 357899999999998643211 11111000000000 0000 11222356889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 155 Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 155 SALTQKGLKTVFDEAIL 171 (174)
T ss_pred cCCcCCCHHHHHHHHHH
Confidence 99999999999998874
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=125.49 Aligned_cols=114 Identities=26% Similarity=0.225 Sum_probs=83.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++-.+|.++|..||||||++++|.. +.... ...|.......+.+++..++++|.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------------------~~pT~g~~~~~i~~~~~~~~~~d~gG 67 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------------------TIPTIGFNIEEIKYKGYSLTIWDLGG 67 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------------------EEEESSEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------------------cCcccccccceeeeCcEEEEEEeccc
Confidence 3457899999999999999999962 11111 01133344456778999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
+..+...+..++..+|++|+|||+.+.- ..+....+..+ . ..++|+++++||.|..++
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 9888888888899999999999999632 22233333332 2 246899999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=126.55 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=73.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG 276 (1043)
.+|+++|..|+|||||+++|+... ... .. .+.+..+.....+.+. ...+++|||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~------------~~-------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE------------VS-------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC------------CC-------CceeceEEEEEEEEECCCCEEEEEEEeCCc
Confidence 679999999999999999997321 100 00 0111112212222221 35789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
+..|.......++.+|++++|+|..+.-.-....-| ....+ ...|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 999988888888999999999999874322222222 22221 345778899999975
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=123.98 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..++|||||+.+++... ... + ..+.-|..... ..+..++ ..+.+|||+|+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~--------------~---~~~T~g~~~~~--~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDE--------------D---YIQTLGVNFME--KTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--------------C---CCCccceEEEE--EEEEECCEEEEEEEEeCCCch
Confidence 68999999999999999996321 000 0 01111222222 2233333 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.|......+++.+|++++|+|+.+....+...-| ..+.+ ...| ++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 61 EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 9988888888999999999999875433332223 22322 2345 7889999985
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=122.04 Aligned_cols=114 Identities=17% Similarity=0.068 Sum_probs=74.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+++++|..|+|||||+.+++... ... .+.+ ..+-.. .....+..+...+.+|||||+.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~--------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG--------------EYIP---TVFDNY-SANVMVDGKPVNLGLWDTAGQED 61 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cCCC---cceeee-EEEEEECCEEEEEEEEECCCchh
Confidence 369999999999999999997311 100 0000 000000 01111222336788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHH-HH--hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~-~~--~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++|+|+|..+.-+.+.. ..|.. .. ..+.|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 988777888999999999999874433333 22322 22 23689999999999853
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-11 Score=118.65 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=73.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+.+++.. .... +....+........+..++ ..+.+|||||..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHS-------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCC-------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5899999999999999999621 1100 0011111111222233343 578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+.-.-+...-| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9988888889999999999998864322222222 2111 2367999999999975
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-12 Score=117.14 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=112.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||..++ |..+.||+-..+.++-..+.+.....+.++....++..++. ++.||||+|+++|.+-+.++++.|-++++
T Consensus 9 LfKfl~i-G~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 9 LFKFLVI-GSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hheeEEe-ccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 5899999 99999999999999999998887777777777777776654 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH----HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~----~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|++..-+.....-| +.+...++-++++.||.||........++. .. + .....+.+ ..+||
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEA-s~-F---------aqEnel~f---lETSa 153 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SR-F---------AQENELMF---LETSA 153 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHH-Hh-h---------hcccceee---eeecc
Confidence 9999854333333222 222334556889999999954222112211 11 1 11122222 45999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|+|+++.+-.+...
T Consensus 154 ~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 154 LTGENVEEAFLKCART 169 (214)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999987665543
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=126.21 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||||+..+.....+.....|.+ .......+..++ +.+.+|||||+.++...+..++..+|++++|
T Consensus 2 ~kv~l~-G~~g~GKTtl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVL-GSRSVGKSSLTVQFVEGHFVESYYPTI-ENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCccccCcch-hhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 578888 999999999988777666655555533 222234445544 4689999999999988888999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....+... .+..+. ..++|+++|+||+|+..... ......+.+. +. .+++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 143 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-------------WG---AAFLES 143 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-------------cC---CeEEEE
Confidence 9998644333222 222222 24679999999999864211 1111122111 11 357889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+.++++.+.+...
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 144 SARENENVEEAFELLIEEIE 163 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987665
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=123.71 Aligned_cols=142 Identities=16% Similarity=0.081 Sum_probs=92.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----chHHHHHHHhhhcCEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV----DFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----~~~~~~~~~~~~aD~iIl 79 (1043)
|+.++ |..++||+|.... ..+..... .....+.+... .+|||||+. ++...+..+++.+|++++
T Consensus 3 ~i~~i-G~~~~GKstl~~~-l~~~~~~~--------~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFV-GAVGAGKTTLFNA-LQGNYTLA--------RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEE-CCCCCCHHHHHHH-HcCCCccC--------ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 45555 9999999998666 34433211 11222233332 379999983 455556677899999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC
Q psy11896 80 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS 159 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~ 159 (1043)
|+|++++.+.....+... ..++|+++++||+|+.+.+.+...+.+.+ + .. ..+++++||++|.
T Consensus 71 v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~-~-------------~~-~~p~~~~Sa~~g~ 133 (158)
T PRK15467 71 VHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLE-T-------------GF-EEPIFELNSHDPQ 133 (158)
T ss_pred EEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHH-c-------------CC-CCCEEEEECCCcc
Confidence 999987654433333222 24689999999999975443322222211 1 11 1478999999999
Q ss_pred CcchHHHHHHhhccc
Q psy11896 160 GKTTLTERILFYTGR 174 (1043)
Q Consensus 160 Gi~~L~~~l~~~l~~ 174 (1043)
|+++|++.+......
T Consensus 134 gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 134 SVQQLVDYLASLTKQ 148 (158)
T ss_pred CHHHHHHHHHHhchh
Confidence 999999999876653
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=123.17 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=71.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
++|+++|+.|+|||||+.+++...-.. . +. ...+... ...+.++ ...+.+|||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--------~--------~~---~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--------V--------YV---PTVFENY---VADIEVDGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CC---Cccccce---EEEEEECCEEEEEEEEeCCCc
Confidence 579999999999999999997421100 0 00 0001011 1122333 356889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHH-HHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNR-QMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|...--..... ..|. .... .++|+++|.||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 88877666677899999999998853221111 1222 2222 4789999999999863
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=118.42 Aligned_cols=97 Identities=26% Similarity=0.227 Sum_probs=67.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC---
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG--- 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG--- 276 (1043)
++|.++|.+++|||||+++|........+ |. .+.|.+ ++|||||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K-------------------------Tq-----~i~~~~---~~IDTPGEyi 48 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK-------------------------TQ-----AIEYYD---NTIDTPGEYI 48 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc-------------------------cc-----eeEecc---cEEECChhhe
Confidence 57999999999999999999633221111 11 122332 3599999
Q ss_pred -CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 -HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 -~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+..|...+......+|.+++|.||.+....-. -..+...+.|+|-||||+|+.
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 34455556666689999999999997532221 223445689999999999987
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=117.97 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc-
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF- 280 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df- 280 (1043)
|+++|+.|+|||||++.|+...... . .+...+.|..... +.+. ..+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-~------------------~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-R------------------TSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-e------------------ecCCCCcceeEEE--EEcc-CeEEEecCCCccccc
Confidence 7999999999999999997311110 0 1112333333222 2233 28999999997653
Q ss_pred ---------hHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 ---------TVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ---------~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...+...+ ..++++++++|...........+++.+...+.|+++++||+|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 60 VSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 22223333 34578899999998777777778888888899999999999985
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-11 Score=127.07 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
..++|.|.|++|+|||||+.+++.....+.. ++.+|-.....+++++..++++|||||.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~---------------------YPFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP---------------------YPFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC---------------------CCccccceeEeeeecCCceEEEecCCcc
Confidence 3578999999999999999999866555433 5667888888899999999999999998
Q ss_pred CCch--------HHHHHHhH-hcCeEEEEEeCCC----CcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 278 VDFT--------VEVERALR-VLDGAILVLCAVG----GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~--------~e~~~~l~-~~D~~ilVvda~~----g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
-|-. .....|++ ..+++++++|.++ .++.|....-+.-...+.|+++|+||+|....
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 7632 22456775 5567788999985 23444443333334567899999999998743
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=123.89 Aligned_cols=114 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..++|||||+.+++... ... .+ .+.-|.... ....+..+...+++|||||+.+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~--------------~~---~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK--------------EY---IPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc--------------CC---CCceEeeeE-EEEEECCEEEEEEEEECCCchh
Confidence 479999999999999999997321 100 00 000011110 1111222346789999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHH-HH--hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQ-MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~-~~--~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|..+...-+... .|.. .. ..++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9887778889999999999998754444332 2432 22 24789999999999863
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-12 Score=129.84 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=118.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeee------------------ecCCccccccccchhhhhhcCceEeeeeEE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHE------------------VRGKDNVGAVMDSMELERQRGITIQSAATY 261 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~------------------v~~~~~~~~~~d~~~~e~~~giTi~~~~~~ 261 (1043)
.-|.++|..|+||||++.+|..+...-...+- +++.-.+..++......+..||+...+...
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHH
Confidence 45889999999999999999865433222111 111111222233333445556544333221
Q ss_pred EEe-----------cCeeEEEEcCCCCCC-chHH-----HHHHh--HhcCeEEEEEeCCCCcchHHHH-----HHHHHHh
Q psy11896 262 TLW-----------KDHNINIIDTPGHVD-FTVE-----VERAL--RVLDGAILVLCAVGGVQSQTLT-----VNRQMKR 317 (1043)
Q Consensus 262 ~~~-----------~~~~i~liDtPG~~d-f~~e-----~~~~l--~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~ 317 (1043)
..+ ....+.||||||+++ |... ...++ .-.-++++|+|....-.+.|.. ....+.+
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532|consen 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh
Confidence 111 235799999999876 3322 22233 3344568899988665555543 3466678
Q ss_pred cCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHH
Q psy11896 318 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKK 397 (1043)
Q Consensus 318 ~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~ 397 (1043)
.++|.|+|.||.|..+..+ +++++..
T Consensus 180 tklp~ivvfNK~Dv~d~~f--a~eWm~D---------------------------------------------------- 205 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEF--ALEWMTD---------------------------------------------------- 205 (366)
T ss_pred ccCCeEEEEecccccccHH--HHHHHHH----------------------------------------------------
Confidence 9999999999999987654 2222211
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhC
Q psy11896 398 EAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 470 (1043)
Q Consensus 398 ~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~l 470 (1043)
.+..++ ++-+.+..++.......++..+++...| ..+++||.+|.|.+.++.+|...+
T Consensus 206 -fE~Fqe----Al~~~~~~y~s~l~~SmSL~leeFY~~l----------rtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 206 -FEAFQE----ALNEAESSYMSNLTRSMSLMLEEFYRSL----------RTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred -HHHHHH----HHHhhccchhHHhhhhHHHHHHHHHhhC----------ceEEEecccCCcHHHHHHHHHHHH
Confidence 111122 2222233334444444455555555444 478899999999999999887654
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=119.25 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=107.5
Q ss_pred eecccccccCCccccCCChh-hhhhcCCccccceEEEEec-CeeEEEEeCCCCcchH-------HHHHHHhhhcCEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFT-------VEVERALRVLDGAILV 80 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~-------~~~~~~~~~aD~iIlV 80 (1043)
|..+.||+|...+.+..... ....+++|.......+... +..+.+|||||+.++. ..+...++.+|++++|
T Consensus 3 G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v 82 (163)
T cd00880 3 GRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFV 82 (163)
T ss_pred CCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEE
Confidence 88899999996665544333 5567778888777776665 6789999999987543 4556688999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|+..........+.......++|+++|+||+|+................ .......+++++||+++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 83 VDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLI-----------LLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhh-----------cccccCCceEEEeeeccCC
Confidence 99998766666654556667889999999999987533221111000000 0122345789999999999
Q ss_pred cchHHHHHHh
Q psy11896 161 KTTLTERILF 170 (1043)
Q Consensus 161 i~~L~~~l~~ 170 (1043)
++++++.+..
T Consensus 152 v~~l~~~l~~ 161 (163)
T cd00880 152 IDELREALIE 161 (163)
T ss_pred HHHHHHHHHh
Confidence 9999988864
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=118.63 Aligned_cols=108 Identities=23% Similarity=0.148 Sum_probs=76.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceE-eeeeEEEE--ecCeeEEEEcCCCCCCc
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI-QSAATYTL--WKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~--~~~~~i~liDtPG~~df 280 (1043)
++|++|+|||||+++|........ ....|. ........ ..+..+.+|||||+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE----------------------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc----------------------ccccchhheeeEEEEECCEEEEEEEEecCChHHH
Confidence 579999999999999974432100 111111 11111222 23678999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+..+........+ ......+.|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 88888888999999999999987665555443 334456889999999999864
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1043 | ||||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 1e-150 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 3e-25 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-150 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 2e-25 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 1e-150 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 3e-25 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 1e-150 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 3e-25 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 1e-149 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 4e-24 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-149 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 3e-25 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 1e-149 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 3e-24 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-149 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 9e-23 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-149 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 9e-23 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 1e-148 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 3e-25 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 1e-138 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 4e-24 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 1e-136 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 4e-26 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-133 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 6e-22 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 1e-133 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 6e-22 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-132 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 6e-22 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-132 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 6e-22 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 4e-68 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 9e-17 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 3e-48 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 9e-04 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 5e-44 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 2e-40 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 3e-40 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 1e-38 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 2e-25 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 5e-08 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 3e-25 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 6e-08 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 2e-24 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 4e-08 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 3e-24 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 2e-09 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 4e-18 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 3e-13 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 3e-05 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 4e-18 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 3e-13 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 3e-05 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 3e-11 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 3e-11 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 3e-11 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 7e-11 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 1e-10 | ||
| 2y0u_Z | 405 | The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou | 2e-10 | ||
| 1ttt_A | 405 | Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com | 3e-10 | ||
| 4abr_Z | 405 | Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir | 4e-10 | ||
| 2c78_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 4e-10 | ||
| 2y0y_Z | 405 | The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo | 4e-10 | ||
| 2wrn_Z | 406 | The Crystal Structure Of The 70s Ribosome Bound To | 4e-10 | ||
| 1jqs_C | 68 | Fitting Of L11 Protein And Elongation Factor G (Dom | 1e-09 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 2e-09 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 3e-09 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 7e-09 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 1e-08 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 2e-08 | ||
| 1mj1_A | 405 | Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB | 3e-08 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 3e-08 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 4e-08 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 4e-08 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 5e-08 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 5e-08 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 5e-08 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 5e-08 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 5e-08 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 5e-08 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 2e-07 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 3e-07 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 4e-07 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 8e-07 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 8e-07 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 1e-06 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 2e-06 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 3e-06 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 4e-06 | ||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 1e-05 | ||
| 1r5b_A | 467 | Crystal Structure Analysis Of Sup35 Length = 467 | 3e-05 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 3e-04 | ||
| 2d74_A | 419 | Crystal Structure Of Translation Initiation Factor | 5e-04 | ||
| 1kk3_A | 410 | Structure Of The Wild-Type Large Gamma Subunit Of I | 7e-04 | ||
| 1kjz_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 8e-04 |
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 | Back alignment and structure |
|
| >pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 | Back alignment and structure |
|
| >pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 | Back alignment and structure |
|
| >pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G' And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog Length = 68 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419 | Back alignment and structure |
|
| >pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 | Back alignment and structure |
|
| >pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 794 bits (2054), Expect = 0.0
Identities = 275/651 (42%), Positives = 390/651 (59%), Gaps = 17/651 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
+E RNIGI AHID+GKTT TERIL+YTGR I E HE G + MD ME E+ R
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE--G----ASQMDWMEQEQDR 59
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
GITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A GV+ QT TV
Sbjct: 60 GITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV 119
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLI 371
RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL+
Sbjct: 120 WRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLV 179
Query: 372 QRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431
+ K + LG + EIP D AE R LIE VAE + L E +L ++ IS +
Sbjct: 180 EMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSE 239
Query: 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIENGQEDKKV 490
+K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V +++V
Sbjct: 240 LKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEV 299
Query: 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVR 549
+ F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL++
Sbjct: 300 IAKADDSA--EFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQ 357
Query: 550 LHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVN 608
+H+N ++++ V +GDI A G+ D +GDT + + N I LES+ +PV+ +S++ +
Sbjct: 358 MHANSRQEIDTVYSGDIAAAVGLKDTGTGDT-LCGEKNDIILESMEFPEPVIHLSVEPKS 416
Query: 609 NKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLG 668
D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G
Sbjct: 417 KADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVG 476
Query: 669 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVP 728
P V+++ET +QSGG GQYG V P A EF + VG VP
Sbjct: 477 APMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAG--FEFENAIVGGVVP 534
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A +
Sbjct: 535 REYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAK 594
Query: 789 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
+ ILEP+M V I P E+ G ++ VT R G + G E + + + A
Sbjct: 595 KCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY 645
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 9e-56
Identities = 62/107 (57%), Positives = 77/107 (71%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
+ MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLD 107
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
A GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + +
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 4e-34
Identities = 53/148 (35%), Positives = 88/148 (59%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
G+G ++M + Y+ + + ++ + +
Sbjct: 664 GRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 793 bits (2050), Expect = 0.0
Identities = 286/650 (44%), Positives = 419/650 (64%), Gaps = 16/650 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
++ +RNIGI+AHID+GKTT TERIL+YTGR I E+HE G A MD ME ER+R
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE--G----AATMDFMEQERER 61
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
GITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLI 371
RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID++
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 372 QRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431
+ KA + LG ++R IP + +A ++L+E A+ DE + +LE + +E++
Sbjct: 182 RMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEE 241
Query: 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491
+ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV
Sbjct: 242 LVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVV 299
Query: 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRL 550
P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+
Sbjct: 300 EIHPDP-NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRM 358
Query: 551 HSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN 609
H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+
Sbjct: 359 HANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 610 KDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669
D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GK
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGK 478
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
P+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK
Sbjct: 479 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEFVNAIVGGVIPK 536
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++
Sbjct: 537 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 596
Query: 790 GVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
G ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 597 GDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF 646
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 9e-56
Identities = 65/107 (60%), Positives = 82/107 (76%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 9e-34
Identities = 58/146 (39%), Positives = 89/146 (60%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIKG 690
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 779 bits (2014), Expect = 0.0
Identities = 293/661 (44%), Positives = 415/661 (62%), Gaps = 25/661 (3%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
PI RNIGISAHID+GKTT TERILFYTG I E+H+ G A MD ME E++R
Sbjct: 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHD--G----AATMDWMEQEQER 59
Query: 252 GITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 304
GITI SAAT W H INIIDTPGHVDFT+EVER++RVLDGA++V CAVGGV
Sbjct: 60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV 119
Query: 305 QSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET 364
Q Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N LQ+ IG
Sbjct: 120 QPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHF 179
Query: 365 KGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
G++DL++ KAI + G E+IPAD+ + A Q LIE AE E L E +L
Sbjct: 180 TGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLG 239
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIE 482
+ ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P +V I
Sbjct: 240 GEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGIL 299
Query: 483 NGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ +D + S D PF ALAFK+ F G LT+ R Y G + G+ + N +
Sbjct: 300 DDGKDTPAERHASDDE--PFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAAR 357
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVV 600
R R+V++H+N+ E+++EV AGDI A G+ D +GDT + D + I LE + +PV+
Sbjct: 358 ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDT-LCDPDAPIILERMEFPEPVI 416
Query: 601 SMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMERE 660
S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I RM+RE
Sbjct: 417 SIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKRE 476
Query: 661 YNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTK-LEF 718
+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL P +N K EF
Sbjct: 477 FNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEF 536
Query: 719 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 778
I++ G +P ++PA+ KG ++ + G L+G V + + L G H VDS+E++F LA
Sbjct: 537 INDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLA 596
Query: 779 AHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
A A K+ +++ +LEPIM VE+ TP E G V+ +++R G+L+G E + V I+A
Sbjct: 597 ASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHA 656
Query: 839 E 839
E
Sbjct: 657 E 657
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 3e-53
Identities = 68/114 (59%), Positives = 86/114 (75%), Gaps = 7/114 (6%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLD 75
A MD ME E++RGITI SAAT W H INIIDTPGHVDFT+EVER++RVLD
Sbjct: 48 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLD 107
Query: 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
GA++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ +
Sbjct: 108 GAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTR 161
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-34
Identities = 54/146 (36%), Positives = 90/146 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L+G V + + L G H VDS+E++F LAA A K+ +++ +LEP
Sbjct: 556 GIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEP 615
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E G V+ +++R G+L+G E + V I+AE+PL++MFG+A LRS T+
Sbjct: 616 IMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTK 675
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+ ++M++ +Y A V ++
Sbjct: 676 GRASYTMEFLKYDEAPSNVAQAVIEA 701
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 738 bits (1907), Expect = 0.0
Identities = 182/650 (28%), Positives = 310/650 (47%), Gaps = 41/650 (6%)
Query: 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGI 253
+ IR + + H SGKTTLTE +L+ TG V + D +
Sbjct: 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV---EEGTTTTDYTPEAKLHRT 60
Query: 254 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
T+++ L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQR 373
+R +P + + KLD+ G D Y ++ +R +G + +P+ G + G+ID+
Sbjct: 121 VAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHG 178
Query: 374 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433
KA +E R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++
Sbjct: 179 KAYRYE---NGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALE 235
Query: 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLN 493
KA + PV + + + GV LL+ +L+ LP+P E
Sbjct: 236 KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE------------------ 277
Query: 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 552
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + +VR+ L
Sbjct: 278 --RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS--EAGQVRLPHLYVPMG 333
Query: 553 NEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVA--DPVVSMSIKAVNN 609
++ +VEE AG + + G + S E + DP V +++
Sbjct: 334 KDLLEVEEAEAGFVLGVPKAEGLHRGMV-LWQGEKPESEEVPFARLPDPNVPVALHPKGR 392
Query: 610 KDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669
D +A+++ +EDP+ E+ E L+ G GELHL +R+ ++Y V
Sbjct: 393 TDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL-QDYGVEVEFSV 451
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
PKV ++ET+ + + +KKQ+GG GQYG V LEP + F G +P
Sbjct: 452 PKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPS 506
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
+ AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 507 KYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 566
Query: 790 GVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
+LEPI +++ P E G VL+ + R G + G E + ++AE
Sbjct: 567 AHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAE 616
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 4e-51
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
D + T+++ L++ H + ++D PG+ DF E+ AL D A++ +
Sbjct: 47 TTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVS 106
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
A GVQ T +R +P + + KLD+ G D Y ++ +R
Sbjct: 107 AEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRST 152
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 2e-34
Identities = 46/148 (31%), Positives = 81/148 (54%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E +LEP
Sbjct: 515 GIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEP 574
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
I +++ P E G VL+ + R G + G E + ++AE+PL ++ + L T
Sbjct: 575 IYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTG 634
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
G G +++++S Y+ P + R+V E
Sbjct: 635 GAGAYTLEFSHYAEVPPHLAQRIVQERA 662
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 388 bits (997), Expect = e-120
Identities = 150/768 (19%), Positives = 282/768 (36%), Gaps = 136/768 (17%)
Query: 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
+RN+ + AH+D GK+TLT+ ++ G IS + D+ + E++RGITI+
Sbjct: 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR-----FTDTRKDEQERGITIK 71
Query: 257 SAAT----------------YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
S A T IN+ID+PGHVDF+ EV ALRV DGA++V+
Sbjct: 72 STAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
Query: 301 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPI-- 358
+ GV QT TV RQ + + INK+DR + + Q + + +
Sbjct: 132 IEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVST 191
Query: 359 ------------------GLGSETKGIIDLIQRKAI--------------------YFEG 380
GS G I++ A F
Sbjct: 192 YADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFN 251
Query: 381 PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440
P ++ A+ K + +++ + + +E + + ++ ++
Sbjct: 252 PKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDE 311
Query: 441 LTRKFTPVLVGTALKNKGV-QTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLN 493
+ +L K LL+ ++ +LP+P Y E + + N
Sbjct: 312 KDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKN 371
Query: 494 PSRDGKHPFIALAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKV 542
+ K+ + R + G ++ G+ + +
Sbjct: 372 CDPKA--DLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIK 429
Query: 543 RVSRLVRLHSNEMEDVEEVLAGDIFALFGVD-CASGDTFVTDKNNSISLESI-YVADPVV 600
+ R+V + +E +++ AG+I L G+D +T + +++ + + PVV
Sbjct: 430 AIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVV 489
Query: 601 SMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMERE 660
++++ N D + ++R +K DP + ES E +V+G GELHLEI Q +E +
Sbjct: 490 QVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHD 548
Query: 661 Y-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE-- 717
+ P+ + P VA++ET+ L K + + Y + EP+ + +E
Sbjct: 549 HAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKA----EPIDEEVSLAIENG 604
Query: 718 -----------------------------------------FIDETVGTNVPKPFLPAII 736
ID+T +++
Sbjct: 605 IINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVV 664
Query: 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG--AMKQAYEEGVWQI 794
F+ ++G + G + VR+ + D H + + A + +I
Sbjct: 665 AAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724
Query: 795 LEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEM 840
EP+ VEI P + G + +++ K+ G + E + T+ A +
Sbjct: 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 772
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 7e-37
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 9 HIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT----------------YTLWKDHNI 52
I G+ D+ + E++RGITI+S A T I
Sbjct: 44 GIISAAKAGEARF---TDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 100
Query: 53 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 112
N+ID+PGHVDF+ EV ALRV DGA++V+ + GV QT TV RQ + + INK+
Sbjct: 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160
Query: 113 DRLGADPYRVINQMRQKTSRWISN 136
DR + + Q +R + +
Sbjct: 161 DRALLELQVSKEDLYQTFARTVES 184
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 857 VLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916
++ D + +EI + F+ ++G + G + VR+ + D H +
Sbjct: 645 LVIDQTKAVQYLHEIKDSVV-AAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGG 703
Query: 917 ILAAHG--AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-- 972
+ A + +I EP+ VEI P + G + +++ K+ G + E +
Sbjct: 704 QIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGT 763
Query: 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDR 1020
T+ A +P+N+ FGF G+LR +T G+ M + +S + D
Sbjct: 764 PLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDP 811
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 7e-66
Identities = 124/475 (26%), Positives = 218/475 (45%), Gaps = 33/475 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I ++ K A D MELE+QRGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+KD+ IN++DTPGH DFT + R L +D A++V+ A GV+ +T+ + +
Sbjct: 74 VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
P + FINK+DR +++++ + + A + PIG+G KGI LI+ +
Sbjct: 134 HTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLY 193
Query: 379 EGPLGDNLRIEEIPADL-KKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437
+ + + E + E + K +L + E++ + +
Sbjct: 194 QPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGAS------HPFEREG--- 244
Query: 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRD 497
L + TP+ G+A+ N GV LLDA + P P G+E ++ P +
Sbjct: 245 --YLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQ---------GRETNSRLVKPEEE 293
Query: 498 GKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
F FK++A ++ ++R G+ +KG Y+VR K+++++ + +
Sbjct: 294 ---KFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAG 350
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
+ E+ EE GDI L GDTF + I + ++ + +
Sbjct: 351 KRENAEEAWPGDIIGLHNHGTIQIGDTFTQGER--FKFTGIPNFASELFRLVRLKDPLKQ 408
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K + + ++E T F +S E ++ +G L ++ A R+E EYN V
Sbjct: 409 KALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVY 462
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 8e-21
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 14 QVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
++ K A D MELE+QRGI++ ++ +KD+ IN++DTPGH DFT + R L
Sbjct: 45 TIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLT 104
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D A++V+ A GV+ +T+ + + P + FINK+DR +++++
Sbjct: 105 AVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESI 161
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 8e-66
Identities = 122/474 (25%), Positives = 208/474 (43%), Gaps = 30/474 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTT+TE++L + I V+G N A D ME+E+QRGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+ D +N++DTPGH DF+ + R L +D ++V+ A GV+ +T + +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D P + F+NKLDR DP +++++ ++ A + PIG G KG+ L + + +
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ G ++ I L + +E + + + +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLA---------QQLRDELELVKGASNEFDKE 244
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498
L + TPV GTAL N GV +LD ++++ P P ++ + S D
Sbjct: 245 LFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPM---------PRQTDTRTVEASED- 294
Query: 499 KHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
F FK++A ++ +MR GK KG + VRT K V +S + + +
Sbjct: 295 --KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGD 352
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
VEE GDI L GDTF + + I P + I+ + +
Sbjct: 353 RSHVEEAYPGDILGLHNHGTIQIGDTFTQGEM--MKFTGIPNFAPELFRRIRLKDPLKQK 410
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K + + ++E F + + +V +G L ++ R++ EYN V
Sbjct: 411 QLLKGLVQLSEEGAV-QVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVY 463
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 7e-21
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 14 QVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
V+G N A D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L
Sbjct: 45 TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLT 104
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D ++V+ A GV+ +T + + D P + F+NKLDR DP +++++ +
Sbjct: 105 AVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENE 161
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 4e-34
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 15/160 (9%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQRGI 253
++ IRN I AHID GK+TL++RI+ G +S EM V+DSM+LER+RGI
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEA--------QVLDSMDLERERGI 52
Query: 254 TIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
TI++ + +K + +N IDTPGHVDF+ EV R+L +GA+LV+ A GV++QT
Sbjct: 53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQT 112
Query: 309 LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
L D+ + +NK+D ADP RV ++ VG
Sbjct: 113 LANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG 152
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+
Sbjct: 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGAL 99
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL D+ + +NK+D ADP RV ++
Sbjct: 100 LVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEI 147
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 6e-09
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV- 572
G ++ +R G LRKG+ + + T + R + + + + D E+ G++ + + +
Sbjct: 205 GVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR-LGIFTPKQVDRTELKCGEVGWLVCAIK 263
Query: 573 ---DCASGDTFVTDKNNSIS--LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627
GDT +T N L P V + V++ D + F A+ + + D
Sbjct: 264 DIHGAPVGDT-LTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDA 322
Query: 628 TFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
+ FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 323 SL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 9e-07
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLND-MFGFAGD 992
++ EPI + P + G+V+ L ++ G+ + V + EIP+ + + F
Sbjct: 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDR 457
Query: 993 LRSSTQGKGEFSMDY--SRYSPA 1013
L+S+++G S+DY R+ +
Sbjct: 458 LKSTSRGYA--SLDYNFKRFQAS 478
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 137 bits (349), Expect = 6e-34
Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQRG 252
+ +RN I AH+D GK+TL +R+L YTG IS E E ++D++++ER+RG
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE--------QLLDTLDVERERG 53
Query: 253 ITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 307
IT++ A +K + +++IDTPGHVDF+ EV RAL +GA+L++ A G+++Q
Sbjct: 54 ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQ 113
Query: 308 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
T+ + D+ I INK+D AD RV Q+ + +G
Sbjct: 114 TVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
++D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+
Sbjct: 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGAL 101
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
L++ A G+++QT+ + D+ I INK+D AD RV Q+
Sbjct: 102 LLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQI 149
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 6e-09
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV- 572
G + ++R + G+++ G+ I + T K+ V+ V + +M +++ AGD+ + +
Sbjct: 207 GAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE-VGAQTPKMTKFDKLSAGDVGYIAASIK 265
Query: 573 ---DCASGDTFVTDKNNSIS--LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627
D GDT +T N + A P+V I + + A++++ D
Sbjct: 266 DVRDIRIGDT-ITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDA 324
Query: 628 TFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
Y+PES L G +G LH+EI +R+EREY ++ P V ++
Sbjct: 325 AI--VYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 8e-06
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW-VTIYAEIPLND-MFGFAG 991
+ EP + V I TP E+ G ++ L ++ GI + D V + E+PL++ + F
Sbjct: 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHD 461
Query: 992 DLRSSTQGKGEFSMDY--SRYSPA 1013
++S ++G S DY Y P+
Sbjct: 462 KIKSISRGFA--SYDYEFIGYRPS 483
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 8e-16
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 28/197 (14%)
Query: 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG 252
H + I N+GI HID GKTTL++ + T S + D + ++RG
Sbjct: 14 HMDFKNI-NLGIFGHIDHGKTTLSKVL---TEIAST-----------SAHDKLPESQKRG 58
Query: 253 ITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 308
ITI + + L I ++D PGH D V A ++D A++V+ A G ++QT
Sbjct: 59 ITIDIGFSAFKLENYR-ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEH 117
Query: 309 LTVNRQMKRYDVPCIAFINKLDRLGADPY--RVINQMRQKVGHNAAFLQIPIGLGSETK- 365
+ + ++P I I K D R M+ + I S
Sbjct: 118 MLILDHF---NIPIIVVITKSDNA-GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG 173
Query: 366 -GIIDLIQRKAIYFEGP 381
G+ +L
Sbjct: 174 FGVDELKNLIITTLNNA 190
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
++RGITI + + L I ++D PGH D V A ++D A++V+ A G ++
Sbjct: 54 SQKRGITIDIGFSAFKLENYR-ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 112
Query: 90 QT---LTVNRQMKRYDVPCIAFINKLD 113
QT + + ++P I I K D
Sbjct: 113 QTGEHMLILDHF---NIPIIVVITKSD 136
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
N+ + H+DSGK+T T +++ G I + + + +G V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 251 RGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
RGITI A LWK + + +ID PGH DF + D AIL++ G
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 307 QTLTVNRQMKRYDVPCIAF----------INKLD 330
++ + Q + + +AF +NK+D
Sbjct: 125 AGISKDGQTREH--ALLAFTLGVRQLIVAVNKMD 156
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEV 67
E +G V+D ++ ER+RGITI A LWK + + +ID PGH DF +
Sbjct: 47 AELGKGSFKYAWVLDKLKAERERGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNM 102
Query: 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF----------INKLD 113
D AIL++ G ++ + Q + + +AF +NK+D
Sbjct: 103 ITGTSQADCAILIIAGGVGEFEAGISKDGQTREH--ALLAFTLGVRQLIVAVNKMD 156
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 5e-13
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKTTL + I R V + GIT Q Y + +
Sbjct: 16 HVDHGKTTLLDAI-------------R-HSKVTE-------QEAGGIT-QHIGAYQVTVN 53
Query: 267 HN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 325
I +DTPGH FT R +V D ILV+ A GV QT+ K +VP I
Sbjct: 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA 113
Query: 326 INKLDRLGADPYRVINQMRQ 345
INK+D+ A+P RV+ ++ +
Sbjct: 114 INKMDKPEANPDRVMQELME 133
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 51/152 (33%), Positives = 67/152 (44%), Gaps = 24/152 (15%)
Query: 35 GITIQSAATYTLWKDHN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93
GIT Q Y + + I +DTPGH FT R +V D ILV+ A GV QT+
Sbjct: 40 GIT-QHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98
Query: 94 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHK--PIEY---I 148
K +VP I INK+D+ A+P RV+ + L E+ P E+
Sbjct: 99 AINHAKAANVPIIVAINKMDKPEANPDRVMQE-------------LMEYNLVPEEWGGDT 145
Query: 149 RNIGISAHIDSGKTTLTERILFYTGRISEMHE 180
+SA G L E IL +SEM E
Sbjct: 146 IFCKLSAKTKEGLDHLLEMILL----VSEMEE 173
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-12
Identities = 101/636 (15%), Positives = 192/636 (30%), Gaps = 196/636 (30%)
Query: 1 MEHKVK-IIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 59
+++ K I+ + ++ + V D + I S DH II +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMP-----KSIL--SKEEI----DH---IIMSKD 59
Query: 60 HVDFTVEVERALRVLDGAILVLCAVG--GVQ---SQTLTVNRQ--MKRYDVPCIA----- 107
V LR+ L + VQ + L +N + M
Sbjct: 60 ------AVSGTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 108 --FINKLDRLGAD-----PYRV-----INQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155
+I + DRL D Y V ++RQ L E +P + + G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---------LLELRPAKNVLIDGVLG 160
Query: 156 HIDSGKTTLTERILFYTGRISEMHETSRWIS-NESLSEHKPIEYIRNIGISAHIDSGKTT 214
SGKT + + +M W++ S +E ++ + ID
Sbjct: 161 ---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDP---N 212
Query: 215 LTERILFYTGRISEMHEVRGK-----------------DNV--GAVMDSMELE------- 248
T R + +H ++ + NV ++ L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 249 RQRGIT-IQSAATYTLWKDHNINIIDTPGHVDFTV-EVERAL-------------RVLDG 293
R + +T SAAT T +I++ T EV+ L VL
Sbjct: 273 RFKQVTDFLSAATTT-----HISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 294 AILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK--LDRLGADPYRVINQMRQKVGHNA 351
L + L K + + I + L+ L +P + R+ +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EP----AEYRKMFDRLS 379
Query: 352 AF---LQIPIGL---------GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEA 399
F IP L S+ +++ + + ++ + P + I I +LK +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 400 ESKRQ---ELIE----------------------------HVAEGDEILGEMFLEEKSIS 428
E++ +++ H+ + E + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVF 497
Query: 429 EDD--IKKAIRRSTLTRKFTPVLVGTAL----------KNKGV-QTLLDAVLDYLPNPGE 475
D +++ IR + + ++ T N + L++A+LD+LP E
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 476 VTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511
++ + D IAL + EA
Sbjct: 558 -------------NLICSKYTDLLR--IALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 1e-06
Identities = 68/534 (12%), Positives = 156/534 (29%), Gaps = 149/534 (27%)
Query: 552 SNEME----DVEEVLAGDIFALFGVDCASGDTFVTDKNNSI----SLESIYVADPVVSMS 603
+ E + D+ V F DC V D SI ++ I ++ VS +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF--DCKD----VQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 604 IKAVNNKDRDNFSKAVQRFTKE--DPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
++ + VQ+F +E + F P E + +Y ++ +R Y
Sbjct: 65 LRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLY 120
Query: 662 NCPVVLGK-------PKVAFKETL--VQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA 712
N V K P + ++ L ++P + GSG+ + S
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKTWVALDVCL----SY 174
Query: 713 NTKLEFIDE----TVGT-NVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM 767
+ + + + N P+ L + K Q+ + +++ +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-- 232
Query: 768 VDSNEISFILAAHGAMKQAYEEG------VW--QILEPIMSVEISTPIEFQGSVLNLVTK 819
E+ +L + YE V + F S L+T
Sbjct: 233 ----ELRRLL-----KSKPYENCLLVLLNVQNAKAWNA-----------FNLSCKILLTT 272
Query: 820 RHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 879
R VT + LS + + + + + +
Sbjct: 273 R----------FKQVTDF--------LSAATTTHISLDHHSMTLTPDEVKSL-LLKYLD- 312
Query: 880 FKQMCEKGCL-----SGS--RVAGVRMVLKDGDNH-----MVDSNEISFILAA------H 921
C L + + R++ + ++DG V+ ++++ I+ +
Sbjct: 313 ----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 922 GAMKQAYE------EGVWQILEPIMSV---EISTPIEFQGSVLNLVTKRHGILQGNEGKD 972
++ ++ I ++S+ ++ V+N + K +++ K+
Sbjct: 369 AEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIK--SDVMVVVNKLHKY-SLVEKQ-PKE 423
Query: 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
++I + ++ + +V+ Y
Sbjct: 424 STISIP-------------SI----------YLELKVKLENEYALHRSIVDHYN 454
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 6e-12
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L G I E + E + + ++D ++ ER+
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RG+TI K + IID PGH DF + D AILV+ A G ++
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 311 VNRQMKRYDVPC--------IAFINKLD 330
V Q + + + I +NK+D
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMD 155
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71
++ + + ++D ++ ER+RG+TI K + IID PGH DF +
Sbjct: 46 KKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGA 105
Query: 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC--------IAFINKLD 113
D AILV+ A G ++V Q + + + I +NK+D
Sbjct: 106 SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 9e-12
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 187 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE------------MHEVRG 234
L +H+ E +R ++D GK+TL R+L + I E
Sbjct: 13 LAYLGQHERKEMLR-FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGD 71
Query: 235 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGA 294
++ ++D ++ ER++GITI A Y I DTPGH +T + D A
Sbjct: 72 DVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLA 131
Query: 295 ILVLCAVGGVQSQT 308
I+++ A GVQ+QT
Sbjct: 132 IILVDARYGVQTQT 145
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D ++ ER++GITI A Y I DTPGH +T + D AI+++ A
Sbjct: 78 LVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 137
Query: 84 VGGVQSQT 91
GVQ+QT
Sbjct: 138 RYGVQTQT 145
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
NI H+D+GK+TL ILF TG + + M ++ + + +DS ER+
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
+G T++ Y + +++D PGH + + D +LV+ A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 311 VNRQMK 316
Q +
Sbjct: 165 RGGQTR 170
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 18/88 (20%), Positives = 35/88 (39%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71
+E + + +DS ER++G T++ Y + +++D PGH + +
Sbjct: 83 KEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGA 142
Query: 72 RVLDGAILVLCAVGGVQSQTLTVNRQMK 99
D +LV+ A G Q +
Sbjct: 143 SQADIGVLVISARRGEFEAGFERGGQTR 170
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
+ + H+D+GK+TL R+L+ +++ + +++ GK + +MD
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK---SSFKFAWIMDQTNE 225
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER+RG+T+ N I+D PGH DF
Sbjct: 226 ERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 258
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
+MD ER+RG+T+ N I+D PGH DF
Sbjct: 219 IMDQTNEERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 258
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-10
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
+ + H+D+GK+TL R+L+ +++ + +++ GK + +MD
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK---SSFKFAWIMDQTNE 91
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER+RG+T+ N I+D PGH DF
Sbjct: 92 ERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 124
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
+MD ER+RG+T+ N I+D PGH DF
Sbjct: 85 IMDQTNEERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 124
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
++ ++ H+DSGK+T+ RI+F G I+ M ++ GK G+ ++D+ E
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGK---GSFSYAWLLDTTEE 235
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER RG+T+ A I D PGH DF
Sbjct: 236 ERARGVTMDVA----STTFESDKKIYEIGDAPGHRDF 268
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
++D+ E ER RG+T+ A I D PGH DF
Sbjct: 229 LLDTTEEERARGVTMDVA----STTFESDKKIYEIGDAPGHRDF 268
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 31/144 (21%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT + + + EV+ ++ D ER RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERARGITINTAHV 68
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT-- 308
Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 69 EYETAKRHYSH-VDCPGHADY---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 309 -LTVNRQMKRYDVPCIA-FINKLD 330
+ + RQ+ VP I F+NK+D
Sbjct: 119 HILLARQV---GVPYIVVFMNKVD 139
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
ER RGITI +A Y K H ++ D PGH D+ + +DGAILV
Sbjct: 56 ERARGITINTAHVEYETAKRHYSHV-DCPGHADY---------IKNMITGAAQMDGAILV 105
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT + + RQ+ VP I F+NK+D
Sbjct: 106 VSAADGPMPQTREHILLARQV---GVPYIVVFMNKVD 139
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 7e-10
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 36/146 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
N+G H+D GKTTLT I T +++ + R D + D+ E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQI----DNAPEEKARGITINTS 350
Query: 259 -ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT 308
Y H + +D PGH D+ V +DGAILV+ A G QT
Sbjct: 351 HVEYDTPTRHYAH-VDCPGHADY---------VKNMITGAAQMDGAILVVAATDGPMPQT 400
Query: 309 ---LTVNRQMKRYDVPCIA-FINKLD 330
+ + RQ+ VP I F+NK D
Sbjct: 401 REHILLGRQV---GVPYIIVFLNKCD 423
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
E+ RGITI ++ Y H ++ D PGH D+ V +DGAILV
Sbjct: 340 EKARGITINTSHVEYDTPTRHYAHV-DCPGHADY---------VKNMITGAAQMDGAILV 389
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT + + RQ+ VP I F+NK D
Sbjct: 390 VAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 7e-10
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT I T ++E + K +D+ ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKY--EEIDNAPEERARGITINAAHV 59
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT-- 308
Y+ H + D PGH D+ V LDG ILV+ A G QT
Sbjct: 60 EYSTAARHYAH-TDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQTRE 109
Query: 309 -LTVNRQMKRYDVPCIA-FINKLD 330
L + RQ+ V + ++NK D
Sbjct: 110 HLLLARQI---GVEHVVVYVNKAD 130
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
ER RGITI +A Y+ H + D PGH D+ V LDG ILV
Sbjct: 47 ERARGITINAAHVEYSTAARHYAHT-DCPGHADY---------VKNMITGTAPLDGCILV 96
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT L + RQ+ V + ++NK D
Sbjct: 97 VAANDGPMPQTREHLLLARQI---GVEHVVVYVNKAD 130
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 25/257 (9%), Positives = 54/257 (21%), Gaps = 99/257 (38%)
Query: 151 IGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDS 210
+G S H + L R + N+ I S
Sbjct: 1 MGSSHHHHHHSSGLVPRG-------------------------SHMA---NVAIIGTEKS 32
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
G+T+L + ++G + + N+
Sbjct: 33 GRTSLAANL-----------------------------GKKGTSSDITMYNNDKEGRNMV 63
Query: 271 IIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT---LTVNRQMKRY 318
+D + + D A+L G+ + T + +
Sbjct: 64 FVDAHSYPKT---------LKSLITALNISDIAVLC-IPPQGLDAHTGECIIALDLL--- 110
Query: 319 DVP-CIAFINKLDRLGADPYR---VINQMRQKVGHNAAFLQIPIGLGSETKG-------- 366
I + + D + + +++ + K
Sbjct: 111 GFKHGIIALTRSDS--THMHAIDELKAKLKVIT-SGTVLQDWECISLNTNKSAKNPFEGV 167
Query: 367 --IIDLIQRKAIYFEGP 381
+ I A E
Sbjct: 168 DELKARINEVAEKIEAE 184
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-08
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 25/153 (16%)
Query: 35 GITIQS--AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL 92
GIT Q A +L I +DTPGH F+ R +V D ILV+ A GV QT+
Sbjct: 36 GIT-QHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV 94
Query: 93 TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH--KPIEY--- 147
+ K VP + INK D+ ADP +V + L + +Y
Sbjct: 95 ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKE-------------LLAYDVVCEDYGGD 141
Query: 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHE 180
++ + +SA L E + ++EM E
Sbjct: 142 VQAVHVSALTGENMMALAEATIA----LAEMLE 170
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 24/139 (17%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQS--AATYTLW 264
H+D GKTTL +++ R K V A ME GIT Q A +L
Sbjct: 12 HVDHGKTTLLDKL-------------R-KTQVAA----ME---AGGIT-QHIGAFLVSLP 49
Query: 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA 324
I +DTPGH F+ R +V D ILV+ A GV QT+ + K VP +
Sbjct: 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVL 109
Query: 325 FINKLDRLGADPYRVINQM 343
INK D+ ADP +V ++
Sbjct: 110 AINKCDKAEADPEKVKKEL 128
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKT+L E I R V + GIT Q Y + +
Sbjct: 12 HVDHGKTSLLEYI-------------R-STKVAS-------GEAGGIT-QHIGAYHVETE 49
Query: 267 HN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 325
+ I +DTPGH FT R + D +LV+ A GV QT+ + K VP +
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVA 109
Query: 326 INKLDRLGADPYRVINQMRQ 345
+NK+D+ ADP RV N++ Q
Sbjct: 110 VNKIDKPEADPDRVKNELSQ 129
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 35 GITIQSAATYTLWKDHN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93
GIT Q Y + ++ I +DTPGH FT R + D +LV+ A GV QT+
Sbjct: 36 GIT-QHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94
Query: 94 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI------EY 147
+ K VP + +NK+D+ ADP RV N+ LS++ + E
Sbjct: 95 AIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE-------------LSQYGILPEEWGGES 141
Query: 148 IRNIGISAHIDSGKTTLTERIL 169
+ +SA +G L + IL
Sbjct: 142 Q-FVHVSAKAGTGIDELLDAIL 162
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 63/180 (35%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNV------------GAVMDSMELERQRGIT 254
H+D GKTTL + I RG V GA M++
Sbjct: 13 HVDHGKTTLLDHI-------------RGS-AVASREAGGITQHIGATEIPMDVIEGICGD 58
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTL 309
+ + IDTPGH FT LR + D AIL++ G + QT
Sbjct: 59 FLKKFSIRE-TLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQ 112
Query: 310 TVNRQMKRYDVPCIAFINKLDRLG--------------------------ADPYRVINQM 343
++ Y P + NK+DR+ Y ++ ++
Sbjct: 113 EALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 36/110 (32%)
Query: 48 KDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYD 102
+ IDTPGH FT LR + D AIL++ G + QT ++ Y
Sbjct: 68 TLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 103 VPCIAFINKLDRLG--------------------------ADPYRVINQM 126
P + NK+DR+ Y ++ ++
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 201 NIGISAHIDSGKTTLTERILFYTG-----RISEMHEVRGKDNVGAVMDSMELERQRGITI 255
NIG+ H+D GKTTL + I TG ++ G +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCES----CKKPEAYVTEPSC 62
Query: 256 QSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQT---LT 310
+S + I+ ID PGH + ++DGAILV+ A Q QT
Sbjct: 63 KSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV 122
Query: 311 VNRQMKRYDVPCIA-FINKLD 330
+ V + NK+D
Sbjct: 123 ALGIIG---VKNLIIVQNKVD 140
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 49/158 (31%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG+ H+D GKTTLT+ ++ + + E +RGITI+ A
Sbjct: 12 NIGMVGHVDHGKTTLTK-------ALTGVWTDTHSE-----------ELRRGITIKIGFA 53
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALR----------------------VLDGAILV 297
+ + N T + +R ++DGAILV
Sbjct: 54 DAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 113
Query: 298 LCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 330
+ A + QT L + + I NK++
Sbjct: 114 IAANEPCPRPQTREHLMALQIIG---QKNIIIAQNKIE 148
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 49/158 (31%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG+ H+D GKT+LT+ ++ + R + E +RGI+I+ A
Sbjct: 10 NIGMVGHVDHGKTSLTK-------ALTGVWTDRHSE-----------ELRRGISIRLGYA 51
Query: 260 TYTLWKDHN----------------------INIIDTPGHVDFTVEVERALRVLDGAILV 297
+ K ++ +D+PGH + ++DGAILV
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 298 LCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 330
+ A Q QT L + + I NK+D
Sbjct: 112 IAANEPCPQPQTKEHLMALEILG---IDKIIIVQNKID 146
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Length = 332 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQG-NEGKDDWVTIYAEIPLNDMFGFAGD 992
Q++EP +V I E QG ++ + R G L V + +P + GF +
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181
Query: 993 LRSSTQGKGEFSMDYSRYSP 1012
+ T G G + Y P
Sbjct: 182 FMTLTSGSGLLYHTFDHYGP 201
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Length = 332 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 37/174 (21%)
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNN-------KDRDNFSKAVQRFTKE---- 625
DT + +N +L ++ V +P V+M+ VN ++R KE
Sbjct: 12 SDT-ICAQNAVEALPALSVDEPTVTMTF-QVNTSPFAGXEGXFVTSRNILERLEKELVHN 69
Query: 626 -----DPTFHFFYDPESKET-LVSGMGELHLEIYAQRMERE-YNCPVVLGKPKVAFKE-- 676
+ T + + VSG GELHL I + M RE + V +P+V E
Sbjct: 70 VALRVEQT-------DDPDKFRVSGRGELHLSILIENMRREGFELAV--SRPEVIIXEED 120
Query: 677 -TLVQPFD---FDYLHKKQSGGSGQYGRVIGTLEPLPPSAN--TKLEFIDETVG 724
L++PF+ D + + Q G G G L + P +++FI + G
Sbjct: 121 GQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRG 174
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1043 | |||
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 100.0 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 100.0 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 100.0 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 100.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 100.0 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 100.0 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 100.0 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 100.0 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 100.0 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 100.0 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 100.0 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 100.0 | |
| 3e3x_A | 332 | BIPA; MCSG,PSI2, structural genomics, protein stru | 100.0 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 100.0 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 100.0 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 100.0 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 100.0 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 100.0 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.97 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.97 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.97 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.97 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.96 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.96 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.96 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.96 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.96 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.96 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.96 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.96 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.95 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.95 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.94 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.94 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.93 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.89 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.89 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.87 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.86 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.82 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.75 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.73 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.7 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.7 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.7 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.69 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.68 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.67 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.67 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.67 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.67 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.67 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.67 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.65 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.65 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.65 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.64 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.64 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.63 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.62 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.62 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.62 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.62 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.62 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.62 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.62 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.62 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.61 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.61 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.61 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.6 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.6 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.59 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.59 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.59 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.59 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.58 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.58 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.58 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.58 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.58 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.58 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.57 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.57 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.57 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.57 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.56 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.56 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.56 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.56 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.56 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.56 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.56 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.56 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.56 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.55 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.55 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.55 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.55 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.55 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.55 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.55 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.54 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.54 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.54 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.54 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.54 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.54 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.54 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.54 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.53 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.53 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.53 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.53 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.53 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.53 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.53 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.53 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.53 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.53 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.53 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.53 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.53 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.53 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.53 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.53 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.53 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.53 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.53 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.52 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.52 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.52 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.52 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.52 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.52 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.52 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.52 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.51 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.51 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.51 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.51 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.51 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.51 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.51 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.51 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.51 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.51 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.5 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.5 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.5 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.5 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.5 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.5 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.5 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.5 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.5 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.5 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.5 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.5 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.5 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.5 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.5 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.5 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.5 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.5 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.5 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.5 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.5 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.5 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.5 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.49 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.49 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.49 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.49 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.49 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.49 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.49 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.49 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.49 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.49 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.49 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.49 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.49 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.48 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.48 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.48 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.48 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.48 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.48 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.48 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.48 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.48 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.48 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.47 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.47 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.47 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.47 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.47 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.47 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.47 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.47 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.47 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.47 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.47 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.47 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.46 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.46 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.46 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.46 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.46 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.46 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.46 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.46 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.46 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.46 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.46 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.46 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.46 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.46 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.45 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.45 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.45 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.45 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.45 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.45 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.45 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.45 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.45 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.45 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.45 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.45 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.45 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.45 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.45 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.44 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.44 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.44 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.44 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.44 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.44 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.44 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.44 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.44 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.44 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.43 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.43 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.43 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.43 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.43 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.43 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.43 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.43 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.43 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.43 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.42 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.42 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.42 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.42 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.42 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.42 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.42 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.42 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.42 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.42 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.42 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.42 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.42 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.42 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.42 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.41 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.41 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.41 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.41 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.41 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.41 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.41 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.4 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.4 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.4 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.4 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.4 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.39 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.39 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.39 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.39 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.39 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.38 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.38 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.38 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.38 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.38 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.38 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.38 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.37 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.37 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.37 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.36 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.36 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.36 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.36 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.36 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.36 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.36 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.35 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.35 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.35 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.34 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.34 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.34 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.33 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.32 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.32 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.32 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.99 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.99 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.3 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.3 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.3 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.29 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.29 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.29 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.28 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.27 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.27 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.26 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.25 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.25 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.25 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.24 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.24 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.24 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.22 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.21 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.2 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.2 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.19 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.19 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.18 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.18 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.17 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.16 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.16 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.15 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.15 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.14 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.13 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.13 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.12 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.12 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.12 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.11 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.1 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.09 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.09 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.09 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.07 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.07 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.06 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.06 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.05 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.05 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.04 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.04 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.02 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.0 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 98.98 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.95 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 98.92 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 98.92 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.92 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 98.91 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.89 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.88 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.88 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.86 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.86 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.86 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.86 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.81 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.79 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.79 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 98.74 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.74 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.71 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.7 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.69 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.62 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 98.57 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.57 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.55 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.54 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.52 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.49 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.47 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.45 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.41 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.41 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.4 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.39 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.39 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.38 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.36 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.29 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.26 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.26 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.22 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 98.18 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.15 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.15 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.09 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.07 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.07 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.05 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.98 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.96 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.96 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 97.93 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.8 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 97.78 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.69 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.65 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 97.62 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.6 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.59 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 97.58 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.5 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.49 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.41 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.33 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.29 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.13 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.13 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.06 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.04 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.99 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 96.99 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 96.98 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.82 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.76 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 96.76 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.73 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 96.72 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.72 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 96.67 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.63 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 96.6 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.54 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 96.52 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.48 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.38 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 96.37 | |
| 2cve_A | 191 | Hypothetical protein TTHA1053; COG1739, UPF0029, s | 96.3 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.26 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 96.26 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.24 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.23 | |
| 1vi7_A | 217 | Hypothetical protein YIGZ; structural genomics, un | 96.17 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 95.92 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 95.87 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 95.72 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 95.24 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.18 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 95.11 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.04 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.89 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.44 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 94.32 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 94.27 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 94.18 | |
| 3e3x_A | 332 | BIPA; MCSG,PSI2, structural genomics, protein stru | 93.83 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 93.45 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 93.21 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 93.08 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.01 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 92.87 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 92.76 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 91.99 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 91.8 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 91.64 | |
| 3lh2_S | 76 | 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun | 90.98 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 90.9 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 90.51 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 90.26 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 90.17 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 90.08 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 90.0 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 89.93 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 89.75 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 89.58 | |
| 2crv_A | 120 | IF-2MT, translation initiation factor IF-2; riboso | 89.09 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 88.72 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 88.6 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 88.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 88.26 |
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-128 Score=1194.31 Aligned_cols=685 Identities=42% Similarity=0.708 Sum_probs=608.3
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-------
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------- 265 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------- 265 (1043)
..|.++||||||+||+|||||||+++|++++|.+.+.|.++++ .+++|+++.|++|||||+++.+++.|+
T Consensus 7 ~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~---~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG---AATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp CSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSC
T ss_pred CCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC---CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 3456899999999999999999999999999999998999888 468999999999999999999999996
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 345 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~ 345 (1043)
++.|||||||||.||+.|+.++|+++|+||+||||.+|++.||+.+|++|.++++|+++||||||+..+++...++++++
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~ 163 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKK 163 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeeeccccCCCeeEEEEcccceeEeecCC-CCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc
Q psy11896 346 KVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 346 ~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
+++..+.++++|++.+..|.|++|++++++++|... .|..+...++|.++.+.+..+|..++|.+++.|+.++++|+++
T Consensus 164 ~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~ 243 (709)
T 4fn5_A 164 RLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE 243 (709)
T ss_dssp HHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred hcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999999999999999999999999654 4677788899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcE
Q psy11896 425 KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 425 ~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 503 (1043)
..++.+++...+++....+.++|++|+||++|.|++.|||+|++++|+|.+.+..+... ..+.......|+ +++|++
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~ 321 (709)
T 4fn5_A 244 GELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHAD--DNEPFS 321 (709)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSC--TTSCCE
T ss_pred CCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCC--ccCcce
Confidence 99999999999999999999999999999999999999999999999999876654322 122223455676 899999
Q ss_pred EEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 504 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 504 ~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
++|||+.+|++ |+++|+|||||+|++||+|+|..+++++++++++.++|++++++++++|||||+|.|+ ++.+||||+
T Consensus 322 ~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 322 SLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp EEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEE
T ss_pred EEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEec
Confidence 99999999998 9999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~ 661 (1043)
+...+..++++.+|+|+++++|+|++++|++||.++|++|++|||+++++.+++|||++|+|+|||||||+++||+++|
T Consensus 402 -~~~~~~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~ 480 (709)
T 4fn5_A 402 -SIEKPIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF 480 (709)
T ss_dssp -CSSSCCBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT
T ss_pred -CCCccccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 6677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEecCCeeeEEEeeec-ccceeeeeeeccCCCCceEEEEEEEeeCCC----CCCCCeEEEeccccccCCcchHHHHH
Q psy11896 662 NCPVVLGKPKVAFKETLVQ-PFDFDYLHKKQSGGSGQYGRVIGTLEPLPP----SANTKLEFIDETVGTNVPKPFLPAII 736 (1043)
Q Consensus 662 ~v~i~~~~p~V~yrEti~~-~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~----~~~~~~~f~~~~~~~~l~~~~~~~i~ 736 (1043)
|+++.+++|.|+|||||++ .++.+++|++|+|+++||+.++++++|.+. +.+.++.|.++++++.+|++|+++|+
T Consensus 481 gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~ 560 (709)
T 4fn5_A 481 GVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQ 560 (709)
T ss_dssp CCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHH
T ss_pred CceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHH
Confidence 9999999999999999986 456789999999999999999999999742 23568999999999999999999999
Q ss_pred HHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 737 ~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
+||+|++.+|||+|+||+|++|+|.||++|.+++
T Consensus 561 ~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s---------------------------------------------- 594 (709)
T 4fn5_A 561 KGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDS---------------------------------------------- 594 (709)
T ss_dssp HHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTB----------------------------------------------
T ss_pred HHHHHHHhcCcccCCceeeeEEEEEEccccCCCC----------------------------------------------
Confidence 9998888888888888888887777766665544
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
T Consensus 595 -------------------------------------------------------------------------------- 594 (709)
T 4fn5_A 595 -------------------------------------------------------------------------------- 594 (709)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEE
Q psy11896 897 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT 976 (1043)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~ 976 (1043)
+.++|+.|++.||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++..+
T Consensus 595 ---------------~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~~~~ 659 (709)
T 4fn5_A 595 ---------------NEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKV 659 (709)
T ss_dssp ---------------CHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSSEEE
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCCCEE
Confidence 44455566677888889999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 977 IYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 977 i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
|+|++|++|||||+++||++|||+|+|+|+|+||+++|+++++++|++
T Consensus 660 i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~ 707 (709)
T 4fn5_A 660 IRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKK 707 (709)
T ss_dssp EEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHT
T ss_pred EEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999998863
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-124 Score=1152.37 Aligned_cols=681 Identities=44% Similarity=0.728 Sum_probs=632.9
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-------e
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-------H 267 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~ 267 (1043)
+.+++|||+|+||+|+|||||+++|++.++.+...+.++.+ .+++|+++.|+++|+|+......+.|++ +
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 82 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPH 82 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC---ceeecChhhHHhcCceeeeceEEEEECCccccCCce
Confidence 45678999999999999999999999988888877777766 4689999999999999999999999988 9
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
.++|||||||.+|..++.++++.+|++|+|+|+.+|++.+|..+|+++...++|+++|+||+|+..+++.++++++++.+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecC-CCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKS 426 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~ 426 (1043)
+..+.++++|++.+..|.|++|++.+++++|+. ..|..+...++|+++.+.+.++|.+|+|.+++.||+++++||++..
T Consensus 163 ~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 163 GANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred CCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCC
Confidence 999999999999999999999999999999975 4477777788999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccce--eeeCCCCCCCCCcEE
Q psy11896 427 ISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK--VVLNPSRDGKHPFIA 504 (1043)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~ 504 (1043)
++.+++..++++++..+.++|||||||++|.|++.|||+|++++|+|.+.+.++..... ... ....|+ +++||++
T Consensus 243 l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~--~~~p~~~ 319 (704)
T 2rdo_7 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDD-GKDTPAERHAS--DDEPFSA 319 (704)
T ss_pred CCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCc-ccccccccccC--CCCceEE
Confidence 99999999999999999999999999999999999999999999999876544321110 111 345565 8899999
Q ss_pred EEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEec
Q psy11896 505 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVT 582 (1043)
Q Consensus 505 ~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~ 582 (1043)
+|||+++|++ |+++|+|||||+|++||.|++.+++++++|++|+.++|++++++++|.||||++|.|+ ++.+||||+
T Consensus 320 ~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~- 398 (704)
T 2rdo_7 320 LAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC- 398 (704)
T ss_pred EEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEe-
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999 789999999
Q ss_pred CCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcC
Q psy11896 583 DKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYN 662 (1043)
Q Consensus 583 ~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~ 662 (1043)
+...+..++++++++|+++++|+|+++.|++||.++|++|.+|||++++.+|+||||++|+|||||||||+++||+++||
T Consensus 399 ~~~~~~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~ 478 (704)
T 2rdo_7 399 DPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN 478 (704)
T ss_pred CCCcccccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhC
Confidence 56667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEecCCeeeEEEeeeccc-ceeeeeeeccCCCCceEEEEEEEeeC---CCCCCCCeEEEeccccccCCcchHHHHHHH
Q psy11896 663 CPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPL---PPSANTKLEFIDETVGTNVPKPFLPAIIKG 738 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~~eP~---~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g 738 (1043)
+++.+++|+|+|||||++++ +..++|++|+||+|||++++++++|+ ++ +.++.|.++++|+.+|++|+++|++|
T Consensus 479 v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~--g~g~~f~~~~~g~~~p~~~~~~v~~g 556 (704)
T 2rdo_7 479 VEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSN--PKGYEFINDIKGGVIPGEYIPAVDKG 556 (704)
T ss_pred ceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCC--CCCcEEEEeccCCcCcHHHHHHHHHH
Confidence 99999999999999999988 88999999999999999999999998 54 56899999999999999999999999
Q ss_pred HHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhh
Q psy11896 739 FKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVT 818 (1043)
Q Consensus 739 ~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~ 818 (1043)
|+|++++|||+|+||+||+|+|.||++|.+
T Consensus 557 ~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~-------------------------------------------------- 586 (704)
T 2rdo_7 557 IQEQLKAGPLAGYPVVDMGIRLHFGSYHDV-------------------------------------------------- 586 (704)
T ss_pred HHHHHhcCCcCCCceeeEEEEEEeccccCC--------------------------------------------------
Confidence 999999998888888888877777666544
Q ss_pred cccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceE
Q psy11896 819 KRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVR 898 (1043)
Q Consensus 819 ~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~ 898 (1043)
T Consensus 587 -------------------------------------------------------------------------------- 586 (704)
T 2rdo_7 587 -------------------------------------------------------------------------------- 586 (704)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEE
Q psy11896 899 MVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 978 (1043)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~ 978 (1043)
||++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+
T Consensus 587 -----------ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~ 655 (704)
T 2rdo_7 587 -----------DSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIH 655 (704)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCCeEEEE
Confidence 455566777888888999999999999999999999999999999999999999999999998999999
Q ss_pred EEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 979 AEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 979 a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
|++|++|+|||+++|||+|||+|+|+|+|+||+++|++++++|+++.
T Consensus 656 a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 702 (704)
T 2rdo_7 656 AEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEAR 702 (704)
T ss_pred EEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-123 Score=1140.54 Aligned_cols=683 Identities=42% Similarity=0.686 Sum_probs=609.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
++.++++||+|+||+|+|||||+++|+...+.+...+.++++ .+++|+.+.|+++|+|+......+.|+++.++|||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~---~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liD 81 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG---ASQMDWMEQEQDRGITITSAATTAAWEGHRVNIID 81 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------CCSEEEEEETTEEEEEEC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---ceecccchhhhhcCceEeeeeEEEEECCeeEEEEE
Confidence 355679999999999999999999999888887776666665 46789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+.+|++.++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~ 161 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAP 161 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEE
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+..+.++.|++|++.+..++|+.+.|..+...++|..+.+.++.+|++|++.+++.||+++++|+++..++.+++.
T Consensus 162 ~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 162 IQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp SEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred EEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997223666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcc-cceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE-DKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
.++++++..+.++|||||||++|.|++.||++|++++|+|.+++.++...... .......|+ +++||+++|||+++|
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~a~VfK~~~d 319 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKAD--DSAEFAALAFKVMTD 319 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSC--TTSCCEEEEEEEEEE
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCC--CCCceEEEEEEeeec
Confidence 99999999999999999999999999999999999999998865543211110 133466776 899999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccc
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISL 590 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~ 590 (1043)
++ |+++|+|||||+|++||+|++.+++++++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+..+
T Consensus 320 ~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~-~~~~~~~~ 398 (693)
T 2xex_A 320 PYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLC-GEKNDIIL 398 (693)
T ss_dssp TTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEE-ETTCCEEC
T ss_pred CCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEe-cCCCcccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999 889999999 55667789
Q ss_pred cCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCC
Q psy11896 591 ESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKP 670 (1043)
Q Consensus 591 ~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p 670 (1043)
+++++|+|+++++|+|+++.|++||.++|++|.+|||+|++.+|+||||++|+|||||||||+++||+++||+++.+++|
T Consensus 399 ~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p 478 (693)
T 2xex_A 399 ESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAP 478 (693)
T ss_dssp CCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccc
Q psy11896 671 KVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSG 750 (1043)
Q Consensus 671 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g 750 (1043)
+|+|||||+++++..++|++|+||+|||++++++++|+++ +.++.|.|+++|+.+|++|+++|++||+|++++|||+|
T Consensus 479 ~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g 556 (693)
T 2xex_A 479 MVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNET--GAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAG 556 (693)
T ss_dssp EECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCT--TCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSS
T ss_pred eEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCC--CCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999986 56899999999999999999999999999888888888
Q ss_pred cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 751 SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 751 ~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+||+|++|+|.||++|
T Consensus 557 ~pv~~v~v~l~dg~~h---------------------------------------------------------------- 572 (693)
T 2xex_A 557 YPLIDVKAKLYDGSYH---------------------------------------------------------------- 572 (693)
T ss_dssp CCBCSEEEEEEEEECC----------------------------------------------------------------
T ss_pred CceeeEEEEEEecccc----------------------------------------------------------------
Confidence 8888888666665555
Q ss_pred CCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCC
Q psy11896 831 DDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 910 (1043)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~ 910 (1043)
++|
T Consensus 573 -----------------------------------------------------------------------------~vd 575 (693)
T 2xex_A 573 -----------------------------------------------------------------------------DVD 575 (693)
T ss_dssp -----------------------------------------------------------------------------TTT
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 445
Q ss_pred CChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCch
Q psy11896 911 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 911 ~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~ 990 (1043)
|++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+
T Consensus 576 s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~ 655 (693)
T 2xex_A 576 SSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYA 655 (693)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCeEEEEEEeCHHHHHhHH
Confidence 55666777888889999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
++|||+|||+|+|+|+|+||+++|++++++++++.
T Consensus 656 ~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 690 (693)
T 2xex_A 656 TSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKN 690 (693)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred HHhHHhcCCceEEEEEeCcceECChhHHHHHHHHh
Confidence 99999999999999999999999999999999875
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-123 Score=1139.94 Aligned_cols=680 Identities=45% Similarity=0.747 Sum_probs=563.9
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++++||+|+||+|+|||||+++|++..+.+...+.++++ .+++|+++.|+++|+|+......+.|+++.++|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~---~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liD 83 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIID 83 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETTEEEEEEC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCC---ceeccCchhhhhcccccccceEEEEECCeEEEEEE
Confidence 345679999999999999999999999988888777777666 46789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+.+|+..++..+|+++...++|+++|+||+|+..+++.+.++++++.++.++.+
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~ 163 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 163 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+..+.++.|++|++.+++++|+++.|..+...++|+++.+.++.+|++|+|.+++.||+++++|+++..++.+++.
T Consensus 164 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~ 243 (691)
T 1dar_A 164 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243 (691)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHH
T ss_pred eeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999997334666778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||||||++|.|++.||++|++++|+|.+.+.++.... .++.....|+ +++|++++|||++.|+
T Consensus 244 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~--~~~p~~~~Vfk~~~d~ 320 (691)
T 1dar_A 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EGEVVEIHPD--PNGPLAALAFKIMADP 320 (691)
T ss_dssp HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SSCEEEECCC--TTSCCEEEEEEEEEET
T ss_pred HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC-CccccccccC--CCCCcEEEEEEEEEcC
Confidence 999999999999999999999999999999999999999998765443221 2234566776 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCc-ccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNS-ISL 590 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~-~~~ 590 (1043)
+ |+++|+|||||+|++||.|++.+++++++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+ ..+
T Consensus 321 ~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~l 399 (691)
T 1dar_A 321 YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLV-GEDAPRVIL 399 (691)
T ss_dssp TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEE-ETTCCCCBC
T ss_pred CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEe-cCCCccccc
Confidence 8 9999999999999999999999999999999999999999999999999999999999 889999999 55556 788
Q ss_pred cCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCC
Q psy11896 591 ESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKP 670 (1043)
Q Consensus 591 ~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p 670 (1043)
+++++++|+++++|+|+++.|++||.++|++|.+|||++++.+|+||||++|+|||||||||+++||+++||+++.+++|
T Consensus 400 ~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p 479 (691)
T 1dar_A 400 ESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKP 479 (691)
T ss_dssp C--------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCC
T ss_pred CCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccc
Q psy11896 671 KVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSG 750 (1043)
Q Consensus 671 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g 750 (1043)
+|+|||||+++++.+++|++|+||+|||++++++++|+++ +.++.|.|+++|+.+|++|+++|++||+|++++|||+|
T Consensus 480 ~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g 557 (691)
T 1dar_A 480 QVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIG 557 (691)
T ss_dssp CBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCT--TCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTS
T ss_pred eEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCC--CCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999986 56899999999999999999999999888888888888
Q ss_pred cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 751 SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 751 ~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+||+|++|+|.||++|.
T Consensus 558 ~pv~~v~v~l~dg~~h~--------------------------------------------------------------- 574 (691)
T 1dar_A 558 FPVVDIKVTLYDGSYHE--------------------------------------------------------------- 574 (691)
T ss_dssp CCBCSEEEEEEEECCCT---------------------------------------------------------------
T ss_pred CceeeEEEEEEeeeccc---------------------------------------------------------------
Confidence 88888876666666554
Q ss_pred CCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCC
Q psy11896 831 DDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 910 (1043)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~ 910 (1043)
+|
T Consensus 575 ------------------------------------------------------------------------------vd 576 (691)
T 1dar_A 575 ------------------------------------------------------------------------------VD 576 (691)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ------------------------------------------------------------------------------cC
Confidence 44
Q ss_pred CChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCch
Q psy11896 911 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 911 ~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~ 990 (1043)
|++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+
T Consensus 577 s~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~ 656 (691)
T 1dar_A 577 SSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYA 656 (691)
T ss_dssp BCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEEEEEEEEETTTSSSHH
T ss_pred cchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeEEEEEEecHHHHhhHH
Confidence 55566777888888999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~ 1023 (1043)
++|||+|||+|+|+|+|+||+++|+++++++++
T Consensus 657 ~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~ 689 (691)
T 1dar_A 657 TDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689 (691)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC
T ss_pred HHHHHhcCCceEEEEEeCcceECChhHHHHHHh
Confidence 999999999999999999999999999999985
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-115 Score=1064.67 Aligned_cols=653 Identities=29% Similarity=0.485 Sum_probs=610.0
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
..+.++|+|+||+|+|||||+++|++..+.+...|.+.++ ..++|+.+.|+.+|+|+......+.|+++.++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 4568999999999999999999999887776666666555 3578899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
||.+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .+..+.++++.+.++ .+.+.+
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~ 160 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPID 160 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEE
Confidence 999999999999999999999999999999999999999999999999999999999 889999999999999 888899
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+|+..+.++.|++|++.++.|+|+. |. +...++|+++.+.++..|++|++.+++.|++++++|+++..++.+++..+
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~ 237 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA 237 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999975 44 66778999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF- 514 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~- 514 (1043)
+++++..+.++|+|++||++|.|++.||++|++++|+|.+.. +++|++++|||++.|++
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~--------------------~~~p~~~~V~k~~~d~~~ 297 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF--------------------GDGPPLAKVFKVQVDPFM 297 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH--------------------CSCSCEEEEEEEEEETTT
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC--------------------CCCCeEEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999996421 46899999999999998
Q ss_pred ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCc--cccc
Q psy11896 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNS--ISLE 591 (1043)
Q Consensus 515 G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~--~~~~ 591 (1043)
|+++|+|||||+|++||.|++.+ +.++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+ ..++
T Consensus 298 G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~-~~~~~~~~~l~ 374 (665)
T 2dy1_A 298 GQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLW-QGEKPESEEVP 374 (665)
T ss_dssp EEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEE-SSSCCCGGGSC
T ss_pred CeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEe-cCCCccccccC
Confidence 99999999999999999999887 678999999999999999999999999999999 789999999 55555 6788
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
+++++.|+++++|+|+++.|.+||.++|++|.+|||++++.+|++|||++|+|||||||||+++||+ +||+++.+++|+
T Consensus 375 ~~~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~ 453 (665)
T 2dy1_A 375 FARLPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPK 453 (665)
T ss_dssp CCCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCC
T ss_pred CCCCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++..++|++|+||+|||++++++++|++ ++.|.+++.++.+|++|+++|++||+|++++|||+|+
T Consensus 454 V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~ 528 (665)
T 2dy1_A 454 VPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGF 528 (665)
T ss_dssp CCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSC
T ss_pred EEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999986 6899999999999999999999999888888888888
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+|++|+|.||++|.
T Consensus 529 pv~~v~v~l~dg~~h~---------------------------------------------------------------- 544 (665)
T 2dy1_A 529 PVMGFKAIVYNGSYHE---------------------------------------------------------------- 544 (665)
T ss_dssp CBCSEEEEEEEEECCT----------------------------------------------------------------
T ss_pred ceeeEEEEEEeeeccC----------------------------------------------------------------
Confidence 8888776666655554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
+||
T Consensus 545 -----------------------------------------------------------------------------~ds 547 (665)
T 2dy1_A 545 -----------------------------------------------------------------------------VDS 547 (665)
T ss_dssp -----------------------------------------------------------------------------TTB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
++++|+.|+++||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||++
T Consensus 548 ~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~~P~~e~~~~~~ 627 (665)
T 2dy1_A 548 SDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYK 627 (665)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEEECHHHHhhHHH
Confidence 55667778888899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~~ 1026 (1043)
+|||+|+|+|+|+|.|+||+++|++++++++++++
T Consensus 628 ~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~ 662 (665)
T 2dy1_A 628 ALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERA 662 (665)
T ss_dssp HHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHh
Confidence 99999999999999999999999999999998764
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-119 Score=1096.83 Aligned_cols=616 Identities=26% Similarity=0.410 Sum_probs=563.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+||||||+||+|||||||+++|++++|.+++.|.++++ .+++|+++.|++||||++++..++.|++++|||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g---~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 77 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG---TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH 77 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS---CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC---CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc
Confidence 58999999999999999999999999999999999888 468999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.||..|+.++++++|+||+||||.+|+++||+.+|++|.++++|+++||||||+.++++...++++++.++..+...+.
T Consensus 78 ~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~- 156 (638)
T 3j25_A 78 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK- 156 (638)
T ss_dssp SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+++ |...... ... +.++.+.+++.||++++.|+++..++..++...++
T Consensus 157 ----------~~~-------~~~~~~~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~ 204 (638)
T 3j25_A 157 ----------VEL-------YPNVCVT-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204 (638)
T ss_dssp ----------CCS-------CGGGCCC-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHH
T ss_pred ----------eEe-------ecccccc-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHh
Confidence 111 1100000 000 12456778888999999999999999999999999
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+.++|||||||++|.|++.|||+|++++|+|... +++|++++|||+.+|++ |+
T Consensus 205 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~---------------------~~~~~~~~Vfk~~~d~~~G~ 263 (638)
T 3j25_A 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR---------------------GPSELCGNVFKIEYTKKRQR 263 (638)
T ss_dssp HHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG---------------------SCCCCCBEEBCCCCCSTTCC
T ss_pred hhhcccccccccccccccCCCchhHhhhhhccccCcccc---------------------hhhhhcceeeeeeeeccCce
Confidence 999999999999999999999999999999999999653 57899999999999998 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEecCCCCcccccCCCCC
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVA 596 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~~~~~~~~~~~~~~~~ 596 (1043)
++|+|||||+|++||.|++.+. .++++.+++.++|+++++++++.||||+++.|.++.+|+|++ +....+.++.+.+|
T Consensus 264 la~~RV~sG~l~~g~~v~~~~~-~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~~~~~tl~-d~~~~~~~~~i~~p 341 (638)
T 3j25_A 264 LAYIRLYSGVLHLRDSVRVSEK-EKIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLG-DTKLLPQRKKIENP 341 (638)
T ss_dssp CCBCCBSSBCCCSCCCSSSCCC-CCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSSCSSEECSS-SSSSGGGCSCCCCC
T ss_pred EEEEEEEcCcccCCCccccccC-cceeEEeeecccccccccccccccceEEEEeccccccCceec-CCCCcccccCccCC
Confidence 9999999999999999988764 457999999999999999999999999999987778899988 66667778888999
Q ss_pred CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEE
Q psy11896 597 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE 676 (1043)
Q Consensus 597 ~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrE 676 (1043)
+|+++++|+|.++.|++||.++|++|.+|||+++++.+++|||++|+|||||||||+++||+++||+++.+++|+|+|||
T Consensus 342 ~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrE 421 (638)
T 3j25_A 342 HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYME 421 (638)
T ss_dssp CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCB
T ss_pred CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceece
Q psy11896 677 TLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756 (1043)
Q Consensus 677 ti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v 756 (1043)
||+++++ +++++|+|+++||+++++.++|++. ++++.|.+++.++.+|++|+++|++||+|++++| |+|+||+|+
T Consensus 422 ti~~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~--~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v 496 (638)
T 3j25_A 422 RPLKNAE--YTIHIEVPPNPFWASIGLSVSPLPL--GSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDC 496 (638)
T ss_dssp CCCSCCE--ECCCCCSSSCCCCCCCCEECCCCCS--SCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSC
T ss_pred Eecccce--EEEEEecCCCCceEEEEEEEecccC--CCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccce
Confidence 9998765 6788999999999999999999875 6789999999999999999999999999999999 999999999
Q ss_pred EEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceee
Q psy11896 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTI 836 (1043)
Q Consensus 757 ~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~ 836 (1043)
+|+|.||++|.+|
T Consensus 497 ~v~l~dg~~h~~~------------------------------------------------------------------- 509 (638)
T 3j25_A 497 KICFKYGLYYSPV------------------------------------------------------------------- 509 (638)
T ss_dssp CCCCCCCCCSSCS-------------------------------------------------------------------
T ss_pred EEEEEECcccCCC-------------------------------------------------------------------
Confidence 9888877766554
Q ss_pred ehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHH
Q psy11896 837 YAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916 (1043)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~ 916 (1043)
|++++|
T Consensus 510 --------------------------------------------------------------------------s~~~~f 515 (638)
T 3j25_A 510 --------------------------------------------------------------------------STPADF 515 (638)
T ss_dssp --------------------------------------------------------------------------CCSHHH
T ss_pred --------------------------------------------------------------------------CCHHHH
Confidence 444556
Q ss_pred HHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhh
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSS 996 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~ 996 (1043)
+.|++.||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|||||+++|||+
T Consensus 516 ~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~ 595 (638)
T 3j25_A 516 RMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFF 595 (638)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCHHHHHHhh
Confidence 66777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeEecccccCCHHHH
Q psy11896 997 TQGKGEFSMDYSRYSPALPEVQ 1018 (1043)
Q Consensus 997 t~G~~~~~~~f~~~~~~~~~~~ 1018 (1043)
|||+|+|+|+|+||+++|+|+.
T Consensus 596 T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 596 TNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp TTTCCEEECCCCCCCCCCSCCS
T ss_pred CCCcEEEEEEECceEECCCCcc
Confidence 9999999999999999999754
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-110 Score=1047.93 Aligned_cols=674 Identities=25% Similarity=0.371 Sum_probs=555.2
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------- 265 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 265 (1043)
+..++|||+|+||+|+|||||+++|++..+.+...+ .++ .+++|+++.|+++|+|+.+....+.|+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i 89 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGE---ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEI 89 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCC---ceeecCchhhhhcceeEeeceeEEEecccccccccc
Confidence 345789999999999999999999998888776533 222 467899999999999999999888886
Q ss_pred -------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC----C
Q psy11896 266 -------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG----A 334 (1043)
Q Consensus 266 -------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~----~ 334 (1043)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+++...++|+++|+||+|+.. .
T Consensus 90 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 90 KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQV 169 (842)
T ss_dssp SSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCC
T ss_pred cccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred C-------HHHHHHHHHHHhC-----------CCceeeeeccccCCCeeEEEE------------------cccceeE--
Q psy11896 335 D-------PYRVINQMRQKVG-----------HNAAFLQIPIGLGSETKGIID------------------LIQRKAI-- 376 (1043)
Q Consensus 335 ~-------~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~~~~g~~d------------------l~~~~~~-- 376 (1043)
+ +.+.+++++..+. ..+.+.++|++++ ..||.+ .+....|
T Consensus 170 ~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa--~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d 247 (842)
T 1n0u_A 170 SKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSG--LHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGD 247 (842)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEET--TTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeec--ccccccchhhhhhhcchhcCCCHHHHHHHHhcc
Confidence 3 3445566666552 3333445666544 333332 2233334
Q ss_pred -eecCCCCCeeEeecCc-------hhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHH---HHHHHhhhcC
Q psy11896 377 -YFEGPLGDNLRIEEIP-------ADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIK---KAIRRSTLTR 443 (1043)
Q Consensus 377 -~~~~~~g~~~~~~~i~-------~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~---~~l~~~~~~~ 443 (1043)
+|++ .|..+...++| ..+.+.+.++|.+|++++++.|++++++||++ ..++.+++. ++|++++ .+
T Consensus 248 ~~~~~-~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~ 325 (842)
T 1n0u_A 248 SFFNP-KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MR 325 (842)
T ss_dssp CEEET-TTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HH
T ss_pred ccccC-CCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hh
Confidence 5654 24444444444 36778899999999999999999999999997 578888887 8888888 77
Q ss_pred ccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc---C---cccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 444 KFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN---G---QEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 444 ~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~---~---~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
.|+|+ ++.|||+|++++|+|.+.+.++... . .........|+ +++||+++|||+..+++ |+
T Consensus 326 ~~~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~p~~a~VfK~~~~~~~G~ 393 (842)
T 1n0u_A 326 KFLPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCD--PKADLMLYVSKMVPTSDKGR 393 (842)
T ss_dssp HHSBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTC--TTSSCEEEEEEEEEBSSTTC
T ss_pred hccch----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccC--CCCCeEEEEEeeeecCCCCc
Confidence 89998 7999999999999998754433211 0 01112345676 88999999999999988 95
Q ss_pred -EEEEEEecCeecCCCEEE------ecCCCc---EEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC-cEEecCC
Q psy11896 517 -LTYMRCYQGKLRKGEMIY------NVRTDK---KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG-DTFVTDK 584 (1043)
Q Consensus 517 -i~~~RV~sGtl~~gd~v~------~~~~~~---~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G-dtl~~~~ 584 (1043)
++|+|||||+|++||.|+ |.++++ .++|++|+.++|++++++++|.||||++|.|+ ++.+| +||+ +.
T Consensus 394 ~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~-~~ 472 (842)
T 1n0u_A 394 FYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT-TS 472 (842)
T ss_dssp EEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEE-SC
T ss_pred eEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeec-CC
Confidence 999999999999999994 444445 68999999999999999999999999999999 66443 6999 56
Q ss_pred CCcccccCCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-C
Q psy11896 585 NNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-N 662 (1043)
Q Consensus 585 ~~~~~~~~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~ 662 (1043)
..+..++++.++ +|+++++|+|+++.|++||.++|++|.+|||+|++.++ ||||++|+|||||||||+++||+++| |
T Consensus 473 ~~~~~l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~ 551 (842)
T 1n0u_A 473 ETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAG 551 (842)
T ss_dssp TTCCCBCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSC
T ss_pred CCccccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcC
Confidence 667788888888 69999999999999999999999999999999999998 89999999999999999999999999 9
Q ss_pred ccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCC--------------------------------
Q psy11896 663 CPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP-------------------------------- 710 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~-------------------------------- 710 (1043)
+++.+++|+|+|||||+++++..+..+. .+.|.++++++||+++
T Consensus 552 vev~~~~P~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~ 627 (842)
T 1n0u_A 552 VPLKISPPVVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDV 627 (842)
T ss_dssp SCEEEECCCCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCH
T ss_pred CceEecCcEEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcch
Confidence 9999999999999999988765332221 2345689999999862
Q ss_pred -----------CCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHH
Q psy11896 711 -----------SANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 779 (1043)
Q Consensus 711 -----------~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~ 779 (1043)
+.++++.|+|.++|+.+|++|+++|++||+||+++|||+|+||+||+|+|.||++|...+
T Consensus 628 ~~~~~iw~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~--------- 698 (842)
T 1n0u_A 628 TDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAI--------- 698 (842)
T ss_dssp HHHHTEEEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGG---------
T ss_pred hhhhceeeeccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCcc---------
Confidence 123579999999999999999999999999999999999999999998888887762100
Q ss_pred HHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeec
Q psy11896 780 HGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLK 859 (1043)
Q Consensus 780 ~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1043)
T Consensus 699 -------------------------------------------------------------------------------- 698 (842)
T 1n0u_A 699 -------------------------------------------------------------------------------- 698 (842)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecce
Q psy11896 860 DGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPI 939 (1043)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~ 939 (1043)
+...+||++|+++||++||++|+|+|||||
T Consensus 699 --------------------------------------------------~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi 728 (842)
T 1n0u_A 699 --------------------------------------------------HRGGGQIIPTMRRATYAGFLLADPKIQEPV 728 (842)
T ss_dssp --------------------------------------------------GSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred --------------------------------------------------ccchhHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 122578999999999999999999999999
Q ss_pred EEEEEEecCcchhhhhhHhhccCeEEeccccCC--CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHH-
Q psy11896 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPE- 1016 (1043)
Q Consensus 940 ~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~- 1016 (1043)
|.|+|+||++++|+||+||++|||+|+++++.+ ++++|+|++|++|||||+++|||+|||+|+|+|+|+||+++|++
T Consensus 729 ~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~ 808 (842)
T 1n0u_A 729 FLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDP 808 (842)
T ss_dssp EEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCT
T ss_pred EEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCc
Confidence 999999999999999999999999999999875 47999999999999999999999999999999999999999998
Q ss_pred -----HHHHHHHHHHHhcCCchH
Q psy11896 1017 -----VQDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 1017 -----~~~~~~~~~~~~~~~~~~ 1034 (1043)
++.++++++|+||||+..
T Consensus 809 ~~~~~~a~~~~~~~R~rKGl~~~ 831 (842)
T 1n0u_A 809 LDPTSKAGEIVLAARKRHGMKEE 831 (842)
T ss_dssp TCTTSHHHHHHHHHHHHTTCCSS
T ss_pred cchhhHHHHHHHHHHHhCCCCCC
Confidence 899999999999999753
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-86 Score=788.44 Aligned_cols=484 Identities=25% Similarity=0.425 Sum_probs=395.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||||+||+|||||||+++|++++|.+.+.|.++++.. ..+++|+++.|++|||||.++..++.|++++|||||
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 4567999999999999999999999999999999999987742 246899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.||+.|+.++|+++|+||+||||.+|+++||+.+|++|.++++|+++||||||+.++++.++++++++.|+..+.|
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p 186 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAP 186 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHH-HHHHHHHHHHHHHHhcCChHHHHHHhc-cCCCCHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK-KEAESKRQELIEHVAEGDEILGEMFLE-EKSISEDD 431 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~-~~~~~~r~~l~e~l~e~dd~l~~~~l~-~~~~~~~~ 431 (1043)
+++|++.+..|.|++|++.++++.|++..|........+.... ..+.+......+.. ...++.+.+ .....
T Consensus 187 ~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~--- 259 (548)
T 3vqt_A 187 MTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAGTPFD--- 259 (548)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHCCCCC---
T ss_pred EEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhccCchh---
Confidence 9999999999999999999999999876654432222111100 01111111100000 001111111 11222
Q ss_pred HHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 432 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
+++++.+.++|||||||++|.|++.|||+|++++|+|.+..... ....+ .++||+++|||+..
T Consensus 260 -----~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------~~~~~---~~~p~~a~vfKi~~ 322 (548)
T 3vqt_A 260 -----EERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------RVVEP---GEEAFTGVVFKIQA 322 (548)
T ss_dssp -----HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------SEECT---TCSSCEEEEEEEEC
T ss_pred -----HHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------cccCC---CCcCceEEEEEEEc
Confidence 23456789999999999999999999999999999997643211 01112 46899999999988
Q ss_pred c---CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCC
Q psy11896 512 G---KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNN 586 (1043)
Q Consensus 512 d---~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~ 586 (1043)
+ ++ |+++|+|||||+|++||.|+|.++++++++++++.++|++++++++|.|||||+|.|+ ++.+||||+ +...
T Consensus 323 ~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~-~~~~ 401 (548)
T 3vqt_A 323 NMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFT-ESKE 401 (548)
T ss_dssp C-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEE-SSSS
T ss_pred cCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEec-CCCC
Confidence 7 56 9999999999999999999999999999999999999999999999999999999999 889999999 6667
Q ss_pred cccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEE
Q psy11896 587 SISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 666 (1043)
Q Consensus 587 ~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~ 666 (1043)
+..++++++++|+++++|+|+++.|.++|.++|++|.++||+ ++..+++|||++|+|||||||||+++||+++||+++.
T Consensus 402 ~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~ 480 (548)
T 3vqt_A 402 VLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAV 480 (548)
T ss_dssp CCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEE
T ss_pred ccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCce-eEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEE
Confidence 788899999999999999999999999999999999999985 5667899999999999999999999999999999976
Q ss_pred -----ecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEE
Q psy11896 667 -----LGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGT 704 (1043)
Q Consensus 667 -----~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 704 (1043)
++.|+|+|||||++.++++++|++|+|++|||+.+++.
T Consensus 481 ~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 481 YEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp EEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred EeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 56799999999999999999999999999999998773
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-73 Score=679.61 Aligned_cols=462 Identities=28% Similarity=0.499 Sum_probs=384.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-----eeE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----HNI 269 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i 269 (1043)
+.+++|||+++||+|||||||+++|++.++.+...+ . + .+++|+++.|+++|+|+......+.|+. +.+
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~i 75 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-K--R---EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKL 75 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------CCCCSEEEEEECTTSCEEEE
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-c--c---ccccccchhhhcccceeeeeEEEEEEEcCCCCeEEE
Confidence 456799999999999999999999998877765432 1 1 4578999999999999999998888863 799
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
+|||||||.||..++.++++.+|++|+|+|+.+|++.||...|..+...++|+++|+||+|+..+++++..+++.+.++.
T Consensus 76 nliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 76 HLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp EEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred EEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988876666666554432
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
..
T Consensus 156 ~~------------------------------------------------------------------------------ 157 (600)
T 2ywe_A 156 DP------------------------------------------------------------------------------ 157 (600)
T ss_dssp CG------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
.+++++||++|.|++.|+++|.+++|+|... +++|+.++||++
T Consensus 158 ----------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~---------------------~~~pl~~lV~~~ 200 (600)
T 2ywe_A 158 ----------------EEAILASAKEGIGIEEILEAIVNRIPPPKGD---------------------PQKPLKALIFDS 200 (600)
T ss_dssp ----------------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEE
T ss_pred ----------------ccEEEEEeecCCCchHHHHHHHHhccccccc---------------------ccCCcceeEEEE
Confidence 1368899999999999999999999998532 678999999999
Q ss_pred eecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecC
Q psy11896 510 EAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTD 583 (1043)
Q Consensus 510 ~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~ 583 (1043)
+.|++ |+++++||++|++++||.|++.+++..+++.+++.+.+ +..+++++.||||+++. |+ ++.+||||+ +
T Consensus 201 ~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~-~ 278 (600)
T 2ywe_A 201 YYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTIT-H 278 (600)
T ss_dssp EEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEE-E
T ss_pred eecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEE-e
Confidence 99998 99999999999999999999999999999999998887 58899999999999874 54 688999999 4
Q ss_pred CCCc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHH
Q psy11896 584 KNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQR 656 (1043)
Q Consensus 584 ~~~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~r 656 (1043)
.+.+ .++++++.++|+++++++|.+..|.++|.++|++|.+|||+++++ +||+++++.| ||||||||+++|
T Consensus 279 ~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~er 356 (600)
T 2ywe_A 279 AKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQER 356 (600)
T ss_dssp SSSCCSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCccccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHH
Confidence 4444 468888999999999999999999999999999999999999987 5789987777 999999999999
Q ss_pred HHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHH
Q psy11896 657 MEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAII 736 (1043)
Q Consensus 657 L~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~ 736 (1043)
|+++||+++.+++|+|+||||+++. | + .+.|.|
T Consensus 357 l~re~~~~v~~~~P~V~yreti~~~-----------g---~-----------------~~~~~~---------------- 389 (600)
T 2ywe_A 357 LEREYGVKIITTAPNVIYRVKKKFT-----------D---E-----------------VIEVRN---------------- 389 (600)
T ss_dssp HHHHSCCCEEECCCEECEEEEETTC-----------S---S-----------------CEEESS----------------
T ss_pred HHhhcCceEEEEeeeEEEEEEecCC-----------C---c-----------------EEEEeC----------------
Confidence 9999999999999999999999741 1 1 112211
Q ss_pred HHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 737 ~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
| +|+|+.|
T Consensus 390 ----------p-~~~p~~~------------------------------------------------------------- 397 (600)
T 2ywe_A 390 ----------P-MDFPDNA------------------------------------------------------------- 397 (600)
T ss_dssp ----------G-GGSCSCG-------------------------------------------------------------
T ss_pred ----------h-hhCCCCC-------------------------------------------------------------
Confidence 1 2344322
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
T Consensus 398 -------------------------------------------------------------------------------- 397 (600)
T 2ywe_A 398 -------------------------------------------------------------------------------- 397 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CCcE
Q psy11896 897 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWV 975 (1043)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~ 975 (1043)
+. -+.||||||.++|.+|++|+|+||++|++|||++++++.. +++.
T Consensus 398 ---------------~~------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~ 444 (600)
T 2ywe_A 398 ---------------GL------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTV 444 (600)
T ss_dssp ---------------GG------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEE
T ss_pred ---------------cc------------------cccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEE
Confidence 00 0368999999999999999999999999999999999985 4689
Q ss_pred EEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 976 TIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 976 ~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
.|+|++|++|+ |||+++|||.|+|.|+|.++|+||+++
T Consensus 445 ~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 445 YLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred EEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 99999999999 899999999999999999999999998
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-72 Score=673.47 Aligned_cols=458 Identities=30% Similarity=0.495 Sum_probs=378.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-----eeEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----HNINI 271 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i~l 271 (1043)
+++|||+|+||+|||||||+++|++.++.+.... . ..+++|+++.|+++|+|+......+.|+. +.++|
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~-----~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-M-----EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-c-----cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEE
Confidence 4689999999999999999999998887775421 1 14588999999999999999999998863 89999
Q ss_pred EcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 272 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 272 iDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
||||||.||..++.++++.+|++|+|+|+.+|++.||...|..+...++|+++|+||+|+..+++++..+++.+.++...
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887766666665543210
Q ss_pred eeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHH
Q psy11896 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431 (1043)
Q Consensus 352 ~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~ 431 (1043)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 432 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
.+++++||++|.|++.|+++|.+++|+|... +++|+.++||+++.
T Consensus 156 --------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~---------------------~~~p~~alI~d~~~ 200 (599)
T 3cb4_D 156 --------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD---------------------PEGPLQALIIDSWF 200 (599)
T ss_dssp --------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEEEE
T ss_pred --------------ceEEEeecccCCCchhHHHHHhhcCCCcccc---------------------ccCCceeeeeeccc
Confidence 1357889999999999999999999999532 67899999999999
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecCCC
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTDKN 585 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~~~ 585 (1043)
+++ |+++++||++|+|++||.+.+.++++.+++.+++.+.+. .++++++.|||++++. |+ ++.+||||+ +..
T Consensus 201 d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~-~~~ 278 (599)
T 3cb4_D 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLT-LAR 278 (599)
T ss_dssp ETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEE-ESS
T ss_pred cccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEee-ecC
Confidence 998 999999999999999999999999999999999988875 8899999999999874 54 678999999 444
Q ss_pred Cc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHHHH
Q psy11896 586 NS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRME 658 (1043)
Q Consensus 586 ~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~rL~ 658 (1043)
.+ ..++++..++|+++++++|.+..|.++|.++|.+|.++||+|++. ++|+++++.| ||+|||||+++||+
T Consensus 279 ~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~ 356 (599)
T 3cb4_D 279 NPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLE 356 (599)
T ss_dssp SCCSSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHH
T ss_pred CccccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHH
Confidence 44 567888999999999999999999999999999999999999987 6899988777 99999999999999
Q ss_pred hhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHH
Q psy11896 659 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKG 738 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g 738 (1043)
++||+++.+++|+|+||||++.. ++++|.| |.
T Consensus 357 ~e~~~~~~~~~P~V~yreti~~g--------------------------------~~~~~~~-------p~--------- 388 (599)
T 3cb4_D 357 REYDLDLITTAPTVVYEVETTSR--------------------------------EVIYVDS-------PS--------- 388 (599)
T ss_dssp HTSCCCEEECCCEECEEEEESSS--------------------------------CEEEESS-------GG---------
T ss_pred HHcCceEEEEeeeEEEEEEecCC--------------------------------ceEEecC-------hh---------
Confidence 99999999999999999998741 1233322 10
Q ss_pred HHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhh
Q psy11896 739 FKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVT 818 (1043)
Q Consensus 739 ~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~ 818 (1043)
++|..
T Consensus 389 -----------~~p~~---------------------------------------------------------------- 393 (599)
T 3cb4_D 389 -----------KLPAV---------------------------------------------------------------- 393 (599)
T ss_dssp -----------GSCCG----------------------------------------------------------------
T ss_pred -----------hCCCc----------------------------------------------------------------
Confidence 11100
Q ss_pred cccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceE
Q psy11896 819 KRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVR 898 (1043)
Q Consensus 819 ~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~ 898 (1043)
|
T Consensus 394 --------------------------------------------------------------------~----------- 394 (599)
T 3cb4_D 394 --------------------------------------------------------------------N----------- 394 (599)
T ss_dssp --------------------------------------------------------------------G-----------
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred EEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEE
Q psy11896 899 MVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 978 (1043)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~ 978 (1043)
.-+.||||||.++|.+|++|+|+||++|++|||++++++..++...|+
T Consensus 395 --------------------------------~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i~ 442 (599)
T 3cb4_D 395 --------------------------------NIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALT 442 (599)
T ss_dssp --------------------------------GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTEEEEE
T ss_pred --------------------------------ccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCeEEEE
Confidence 003689999999999999999999999999999999999988899999
Q ss_pred EEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 979 AEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 979 a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|++|++|+ |||+++|||+|+|.|+|.++|+||+++
T Consensus 443 ~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 443 YEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred EEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 99999999 899999999999999999999999998
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=644.23 Aligned_cols=460 Identities=27% Similarity=0.445 Sum_probs=367.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+++||+++||+|+|||||+++|+...+.+...+.+.++.. ..+++|+++.|+.+|+|+......+.|+++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46899999999999999999999988888877666554322 24578999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
||.+|..++.++++.+|++|+|+|+.+|+..++..+++.+...++|+++|+||+|+..++..+.++++.+.++..+.+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEe-ecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI-EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~-~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
+|+..+..+.|+.|+++..++.|....|..... .++| .+.+. .|.+.+ ++.++++|+++.++..+++..
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~-~~~~~------~l~e~~---~~~~~~~~~e~~~l~~~~~~~ 240 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVK-GLNNP------DLDAAV---GEDLAQQLRDELELVKGASNE 240 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEEC-CSSCH------HHHHHH---CHHHHHHHHHHHHHHHHHSCC
T ss_pred cceecccCcceeeehhhhhHhhhcccCCCcccccccCC-CCCHH------HHHHhh---CHHHHHHhhcccchhhhhhhh
Confidence 999999999999999999999996433432111 2333 11111 122222 667778887765444443333
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee--c
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G 512 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--d 512 (1043)
.+++++..+.++|||||||++|.||+.||++|.+++|+|...... ...+.+ .++||+++|||+.. |
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~---~~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD---------TRTVEA---SEDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS---------SCEECT---TCCSCEEEEEEECSSCC
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc---------ccccCC---CCCCeEEEEEEEeeccC
Confidence 456678889999999999999999999999999999999754210 001222 26899999999976 3
Q ss_pred -CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 513 -KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 513 -~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
++ |+++|+||+||+|++||.|++.+.+++++|++++.++|.+++++++|.||||+++.|+ ++.+||||+ +.. ...
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~-~~~-~~~ 386 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFT-QGE-MMK 386 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEE-SSC-CCC
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEee-cCC-ccc
Confidence 44 9999999999999999999999999999999999999999999999999999999999 889999999 444 567
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++++++|+++++|+|+++.|.++|.++|++|.+||| +++..+++|||++|+|||||||||+++||+++||+++.+++
T Consensus 387 ~~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~ 465 (529)
T 2h5e_A 387 FTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYES 465 (529)
T ss_dssp BCCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEEC
T ss_pred cCCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEec
Confidence 88888999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecc
Q psy11896 670 PKVAFKETLVQP 681 (1043)
Q Consensus 670 p~V~yrEti~~~ 681 (1043)
|.|+|||||...
T Consensus 466 ~~v~y~eti~~~ 477 (529)
T 2h5e_A 466 VNVATARWVECA 477 (529)
T ss_dssp CCCSEEEEEECS
T ss_pred CceeEEEEEcCC
Confidence 999999999644
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-69 Score=642.71 Aligned_cols=461 Identities=26% Similarity=0.437 Sum_probs=394.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
.+++|||+|+||+|+|||||+++|+++.+.+...+.+..+. ...+++|+++.|+++|+|+......+.|+++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45689999999999999999999999999988777766532 12457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+..++..+.++++.+.++..+.++
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
++|++.+..|.|++|++.++++.|+...|......++|+++.+. ..++.|.+ . ++.|+++..+..+....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-------~-~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLGD-------L-ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHTH-------H-HHHHHHHHHHHHHHSCC
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHHH-------H-HHHHhhhcchhhhhhhH
Confidence 99999999999999999999999976555443333444333221 12222211 1 34454442222111111
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee--c
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G 512 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--d 512 (1043)
.+++++..+.++|||||||++|.||++||++|++++|+|....... ..+.+ .++|++++|||+.. |
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~---------~~~~~---~~~~~~~~VFKi~~~~d 307 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS---------RLVKP---EEEKFSGFVFKIQANMD 307 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS---------SCBCT---TSSSCEEEEEEEEECCC
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc---------eeeCC---CcccceeEEEEEecccC
Confidence 1266778899999999999999999999999999999997653211 01112 36899999999986 7
Q ss_pred C-C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 513 K-F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 513 ~-~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
+ + |+++|+|||||+|++||.|++.++++++++++++.++|++++++++|.||||+++.|+ ++++||||+ + ..+..
T Consensus 308 p~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~-~-~~~~~ 385 (528)
T 3tr5_A 308 PGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFT-Q-GERFK 385 (528)
T ss_dssp -CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEE-S-SCCCC
T ss_pred ccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEc-C-CCCcc
Confidence 7 6 9999999999999999999999999999999999999999999999999999999999 889999999 4 34567
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++.++.|+++++|+|+++.|.++|.+||++|.+|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++
T Consensus 386 ~~~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~ 464 (528)
T 3tr5_A 386 FTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYES 464 (528)
T ss_dssp BCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEec
Confidence 788888899999999999999999999999999999996 7888999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecc
Q psy11896 670 PKVAFKETLVQP 681 (1043)
Q Consensus 670 p~V~yrEti~~~ 681 (1043)
|.|+|+++|...
T Consensus 465 ~~v~~~~~i~~~ 476 (528)
T 3tr5_A 465 VNVVTARWVICD 476 (528)
T ss_dssp CSCCEEEEEECS
T ss_pred CceEEEEEecCC
Confidence 999999999753
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=337.23 Aligned_cols=196 Identities=23% Similarity=0.395 Sum_probs=160.3
Q ss_pred EEccC-ccccCcEEecCCCCcccccCCCCCCceEEEEEEeCCC----cc-----HHHHHHHHHHHhcCCCeeEEEEcCCC
Q psy11896 568 ALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN----KD-----RDNFSKAVQRFTKEDPTFHFFYDPES 637 (1043)
Q Consensus 568 ~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~----~d-----~~kl~~~L~~l~~eDpsl~~~~~~et 637 (1043)
++.|+ ++.+||||+ +...+..++++.+++|+++++|+|++. +| ..+|.++|.+|.++||+|++..++++
T Consensus 2 av~Gl~~~~iGDTl~-~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t 80 (332)
T 3e3x_A 2 NATGLGELKISDTIC-AQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDP 80 (332)
T ss_dssp ----------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSST
T ss_pred CccCCCCCccCCEEc-CCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCC
Confidence 46788 789999999 666778889999999999999999987 65 67999999999999999999999999
Q ss_pred CcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeE
Q psy11896 638 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 717 (1043)
Q Consensus 638 ge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~ 717 (1043)
++++|+|||||||+|+++||+++ |+++.+++|+|+|||| . |
T Consensus 81 ~~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~------------G------------------------ 121 (332)
T 3e3x_A 81 DKFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D------------G------------------------ 121 (332)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T------------T------------------------
T ss_pred CeEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C------------C------------------------
Confidence 99999999999999999999999 9999999999999997 0 0
Q ss_pred EEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcccccccc
Q psy11896 718 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 797 (1043)
Q Consensus 718 f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP 797 (1043)
.
T Consensus 122 ---------------------------------------~---------------------------------------- 122 (332)
T 3e3x_A 122 ---------------------------------------Q---------------------------------------- 122 (332)
T ss_dssp ---------------------------------------E----------------------------------------
T ss_pred ---------------------------------------E----------------------------------------
Confidence 0
Q ss_pred ceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHh
Q psy11896 798 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 877 (1043)
Q Consensus 798 ~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1043)
T Consensus 123 -------------------------------------------------------------------------------- 122 (332)
T 3e3x_A 123 -------------------------------------------------------------------------------- 122 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhH
Q psy11896 878 HGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 957 (1043)
Q Consensus 878 ~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~ 957 (1043)
||||||.++|.||++++|+||++
T Consensus 123 ---------------------------------------------------------llEPi~~v~I~vPee~~G~Vm~~ 145 (332)
T 3e3x_A 123 ---------------------------------------------------------LMEPFETVTIDVMEEHQGGIMEN 145 (332)
T ss_dssp ---------------------------------------------------------EEEEEEEEEEEEEGGGHHHHHHH
T ss_pred ---------------------------------------------------------EECcEEEEEEEECHHHHHHHHHH
Confidence 47999999999999999999999
Q ss_pred hhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC-CHHHHH
Q psy11896 958 VTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA-LPEVQD 1019 (1043)
Q Consensus 958 l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~-~~~~~~ 1019 (1043)
|++|||+|.+++..+ +++.|+|++|++|+|||.++||+.|+|+|+|++.|+||+++ |+++++
T Consensus 146 L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~ 209 (332)
T 3e3x_A 146 IGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQ 209 (332)
T ss_dssp HHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSC
T ss_pred HHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccc
Confidence 999999999999875 68899999999999999999999999999999999999999 898754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=350.71 Aligned_cols=278 Identities=19% Similarity=0.198 Sum_probs=200.3
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc--------chHHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV--------DFTVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~--------~~~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+.+.... ..+..||+|++.....+.+++.++.+|||||+. .+...+..+++
T Consensus 3 ~~~V~iv-G~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIV-GRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 4678888 9999999998666555443 257889999999999999999999999999996 57777888999
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|++.+.+..+..+...+...++|+++|+||+|+..... .. ...+...+.++++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~---------~~---------~~~~~lg~~~~~~ 143 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NI---------YDFYSLGFGEPYP 143 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--------------CC---------CSSGGGSSCCCEE
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh---------hH---------HHHHHcCCCCeEE
Confidence 99999999999999998888888888888999999999999864210 00 1112223346789
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+ ....+...+|+++|++|+|||||+++|+......
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~~~~---------------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------ 202 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKNIPE---------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------ 202 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGGCCS---------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE------
T ss_pred EeCcCCCChHHHHHHHHHhcCcccc---------------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCcee------
Confidence 9999999999999999877653110 0012345789999999999999999998432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch----------HH-HHHHhHhcCeEEEEEeCC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT----------VE-VERALRVLDGAILVLCAV 301 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~----------~e-~~~~l~~~D~~ilVvda~ 301 (1043)
.+...|+|.+.....+.+++..++||||||+.++. .. ...+++.+|++++|+|+.
T Consensus 203 --------------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 203 --------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp --------------EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred --------------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 22366788888888889999999999999985433 22 345788999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 302 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 302 ~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...++..++..+...++|+++|+||+|+..
T Consensus 269 ~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 269 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred cCCcHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 99999999988888889999999999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=338.61 Aligned_cols=277 Identities=19% Similarity=0.218 Sum_probs=205.3
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCC--------CcchHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPG--------HVDFTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG--------~~~~~~~~~~~~~~ 73 (1043)
.|+.|+ |.+++||+|...+.+.... .....||+|++.....+.+.+..+.+||||| +..+...+..+++.
T Consensus 24 ~~V~lv-G~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 24 PVVAIV-GRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 567777 9999999998766655444 2567899999999999999999999999999 55677888899999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|||+|++.++...+..++.++...++|+++|+||+|+.... ... ...+...+..++++
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~-------------~e~~~lg~~~~~~i 164 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANI-------------YDFYSLGFGEPYPI 164 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------------------CCSGGGSSSSEEEC
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhH-------------HHHHHcCCCceEEe
Confidence 999999999999999999999999988999999999999986321 111 11122334456899
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|++.+...++... .........+|+++|++|+|||||+++|+......
T Consensus 165 SA~~g~gv~~L~~~i~~~l~~~~---------------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~------- 222 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFKNIP---------------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------- 222 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGGGSC---------------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE-------
T ss_pred ecccccchHHHHHHHHhhccccc---------------ccccccccceeEEecCCCCCHHHHHHHHhCCCccc-------
Confidence 99999999999999987654210 00112346789999999999999999997432211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC----------CCCchHH-HHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVE-VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG----------~~df~~e-~~~~l~~~D~~ilVvda~~ 302 (1043)
.+...|+|.+.....+.+++..++|||||| +..|... ...+++.+|++++|+|+.+
T Consensus 223 -------------~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 223 -------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp -------------ECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred -------------cCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 223567888887888889999999999999 4455544 3457899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++..++..++.++...++|+++|+||+|+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 290 GIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 9999999999999999999999999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=330.65 Aligned_cols=281 Identities=18% Similarity=0.198 Sum_probs=200.9
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~ 73 (1043)
|+.|+ |.+.+||+|...+.+.+... .+..||+|++.....+.+++.++.+|||||+.. +...+..+++.
T Consensus 3 ~v~iv-G~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIV-GRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 56677 99999999997666655543 578999999999999999999999999999864 45677889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHH-HHhhhhccccccccCCCCccceeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM-RQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
||++|+|+|++.+.+..+..+..++...++|+++|+||+|+.+. ..... .+ + +...+.++++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~-~------------~~lg~~~~~~ 144 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPE-L------------YSLGFGEPIP 144 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHH-H------------GGGSSCSCEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHH-H------------HhcCCCCEEE
Confidence 99999999999999888888888888889999999999997421 01111 11 1 1122235689
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+.. . .........+|+++|++|+|||||+++|+.....+
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~~~~~~--~---------~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~------ 207 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEEKGLDL--E---------SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERAL------ 207 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHTTCCS--S---------SCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE------
T ss_pred EeccCCCCHHHHHHHHHHhcccccccc--h---------hccccccCceEEEECCCCCCHHHHHHHHhCCcccc------
Confidence 999999999999999987765321000 0 00012235789999999999999999997432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH------------HHHHHhHhcCeEEEEEeC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------------EVERALRVLDGAILVLCA 300 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~------------e~~~~l~~~D~~ilVvda 300 (1043)
.....|+|.+.....+.+++..+.+|||||+..+.. ....+++.+|++++|+|+
T Consensus 208 --------------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~ 273 (439)
T 1mky_A 208 --------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDA 273 (439)
T ss_dssp --------------ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEET
T ss_pred --------------cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 123557787777778889999999999999854332 235678899999999999
Q ss_pred CCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 301 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 301 ~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
..+...+...++..+...++|+++|+||+|+..
T Consensus 274 ~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 274 TQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 999988888888888888999999999999864
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=335.55 Aligned_cols=329 Identities=22% Similarity=0.250 Sum_probs=239.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-------------- 264 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 264 (1043)
.++|+++||+|||||||+++|+........ .+|+|.......+.|
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e---------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~ 63 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE---------------------AGGITQHIGATEIPMDVIEGICGDFLKKF 63 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC-------------------------CCCBTTEEEEEHHHHHHHSCGGGGGC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc---------------------CCceecccCeEEEeechhhhhcccccccc
Confidence 468999999999999999999843211100 123443333332322
Q ss_pred ----cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHH
Q psy11896 265 ----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 265 ----~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~ 340 (1043)
+...++|||||||.+|...+.++++.+|++|+|+|+.+|+++||...|..+...++|+++|+||||+.....
T Consensus 64 ~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~---- 139 (594)
T 1g7s_A 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR---- 139 (594)
T ss_dssp GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC----
T ss_pred ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccc----
Confidence 223599999999999999999999999999999999999999999999999999999999999999863110
Q ss_pred HHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11896 341 NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420 (1043)
Q Consensus 341 ~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~ 420 (1043)
...+ .++++.........+..+.+.+.+.++.|++.
T Consensus 140 ---------------------------------------~~~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~ 175 (594)
T 1g7s_A 140 ---------------------------------------VHEG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEE 175 (594)
T ss_dssp ---------------------------------------CCTT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------cccC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 01111111122344555666666656666666
Q ss_pred HhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCC
Q psy11896 421 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKH 500 (1043)
Q Consensus 421 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1043)
+++..... .++ ..+..+|++++||++|.|++.|+++|..++|+|.... +.++ +++
T Consensus 176 gl~~e~~~------~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~--------------l~~~--~~~ 230 (594)
T 1g7s_A 176 GFESERFD------RVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQ--------------LKIE--EDS 230 (594)
T ss_dssp TCEEEEGG------GCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG--------------GEEC--TTS
T ss_pred CcchHHHH------HHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchhh--------------hccc--cCC
Confidence 65431100 000 1246789999999999999999999999988664311 0112 678
Q ss_pred CcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEE--EeceEEEec--------cCCeeecCeec--CCCEE
Q psy11896 501 PFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKV--RVSRLVRLH--------SNEMEDVEEVL--AGDIF 567 (1043)
Q Consensus 501 p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~--ki~~l~~~~--------g~~~~~v~~a~--aGdIv 567 (1043)
|+.++|++++.+++ |+++++||++|+|++||.|++.+.+..+ +|.+|+.+. +.+..++++|. +|+++
T Consensus 231 p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v 310 (594)
T 1g7s_A 231 PARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKI 310 (594)
T ss_dssp BCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEE
T ss_pred CceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEE
Confidence 99999999999998 9999999999999999999998877644 999999873 66788999998 99999
Q ss_pred EEccC-ccccCcEEecCCCCcc--------cccCCCCCCceEEEEEEeCCCccHHHHHHHHHHH
Q psy11896 568 ALFGV-DCASGDTFVTDKNNSI--------SLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRF 622 (1043)
Q Consensus 568 ~i~gl-~~~~Gdtl~~~~~~~~--------~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l 622 (1043)
++.|| ++.+||||+. ..++. .+..+.+..+.+.+.|.+......+.|.++|+++
T Consensus 311 ~~~~l~~~~~Gd~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 311 VAPGIDDVMAGSPLRV-VTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp ECSSCTTBCTTCEEEE-CSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred EEcccCCCCCCCEEEe-cCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 99999 7899999983 32221 1223334456677788888888888888888886
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=311.31 Aligned_cols=280 Identities=22% Similarity=0.298 Sum_probs=218.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
+....+||+++||+|+|||||+++|++..+.+.... ...+...+++++|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345578999999999999999999998877765422 1112234567899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcc-------hHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
+++.++|||||||.+|...+..+++.+|++|+|+|+.+|.. .||++++..+...++| +++|+||||+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999986 7999999999999999 899999999975443
Q ss_pred H-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCCh
Q psy11896 337 Y-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDE 415 (1043)
Q Consensus 337 ~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd 415 (1043)
. +..+.+.+.+.
T Consensus 173 ~~~~~~~i~~~~~------------------------------------------------------------------- 185 (439)
T 3j2k_7 173 SNERYEECKEKLV------------------------------------------------------------------- 185 (439)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 2 11121111000
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHH-----------HHHHhCCCCCCCCccccccC
Q psy11896 416 ILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLD-----------AVLDYLPNPGEVTNYAIENG 484 (1043)
Q Consensus 416 ~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld-----------~i~~~lPsp~~~~~~~~~~~ 484 (1043)
.++....+ .....+|++.+||++|.|++++++ .+.+.+|.|..
T Consensus 186 ----~~l~~~g~-------------~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~--------- 239 (439)
T 3j2k_7 186 ----PFLKKVGF-------------NPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNR--------- 239 (439)
T ss_pred ----HHHHHhcc-------------cccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCcc---------
Confidence 01100000 001246899999999999998433 23344665532
Q ss_pred cccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCC
Q psy11896 485 QEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAG 564 (1043)
Q Consensus 485 ~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aG 564 (1043)
..++|+.+.|..++.+ .|++..|||.+|+|++||.|.+.+.+.+.+|.+|+. ...++++|.||
T Consensus 240 ------------~~~~p~r~~v~~~~~~-~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG 302 (439)
T 3j2k_7 240 ------------SVDGPIRLPIVDKYKD-MGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPG 302 (439)
T ss_pred ------------CCCCCeEEEEEEEEcC-CCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCC
Confidence 1578999999888763 499999999999999999999999898999999873 56789999999
Q ss_pred CEEE--EccC---ccccCcEEecCCC
Q psy11896 565 DIFA--LFGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 565 dIv~--i~gl---~~~~Gdtl~~~~~ 585 (1043)
|.|+ +.|+ ++..|++|+ +++
T Consensus 303 ~~v~~~l~gi~~~~i~rG~vl~-~~~ 327 (439)
T 3j2k_7 303 ENLKIRLKGIEEEEILPGFILC-DPS 327 (439)
T ss_pred CcceEEEeccchhhcCCcEEec-CCC
Confidence 9999 6777 678899999 443
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=303.29 Aligned_cols=268 Identities=27% Similarity=0.381 Sum_probs=210.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++||+|+|||||+++|+..... .+... .......+|..+.|+.+|+|++.....+.++++.++|||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~-~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAA---ENPNV-EVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHH---SCTTS-CCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhh---cCccc-cccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 4689999999999999999999853110 00000 0001125788899999999999988888888999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
.+|...+.++++.+|++|+|+|+.+|...|+.+++..+...++| +++|+||+|+.. +. +.++.+.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~-~~~~~~~~~---------- 153 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DP-ELLDLVEME---------- 153 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH-HHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cH-HHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999999 789999999874 21 111111110
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+. .++.
T Consensus 154 -------------------------------------------------~~------------~~l~------------- 159 (405)
T 2c78_A 154 -------------------------------------------------VR------------DLLN------------- 159 (405)
T ss_dssp -------------------------------------------------HH------------HHHH-------------
T ss_pred -------------------------------------------------HH------------HHHH-------------
Confidence 00 0000
Q ss_pred HHhhhcCccEEEEEeeccCCCC------------------HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCC
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKG------------------VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~G------------------v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (1043)
+.-......|++.+||++|.| +..|+++|.+++|.|... .
T Consensus 160 -~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~---------------------~ 217 (405)
T 2c78_A 160 -QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD---------------------V 217 (405)
T ss_dssp -HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC---------------------C
T ss_pred -HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC---------------------C
Confidence 000011235888899999987 899999999999988531 5
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEc--cC
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV 572 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl 572 (1043)
++|+.+.|.+++.+++ |+++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCC
Confidence 7899999999999887 9999999999999999999988776 57899998632 3689999999999865 65
Q ss_pred ---ccccCcEEe
Q psy11896 573 ---DCASGDTFV 581 (1043)
Q Consensus 573 ---~~~~Gdtl~ 581 (1043)
++..||+|+
T Consensus 294 ~~~~i~~G~~l~ 305 (405)
T 2c78_A 294 SREEVERGQVLA 305 (405)
T ss_dssp CTTTCCTTCEEE
T ss_pred cHhhcCceEEEE
Confidence 678999999
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=304.75 Aligned_cols=274 Identities=24% Similarity=0.279 Sum_probs=201.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee--e-----ec---CCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH--E-----VR---GKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~-----v~---~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
...+||+++||+|+|||||+++|++..+.+.... . .. +...+++++|+.+.|+++|+|++.....+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 3568999999999999999999998765553211 0 00 001123568999999999999999998999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH-H
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-Y 337 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~-~ 337 (1043)
+.++|||||||.+|...+..+++.+|++|+|+|+.+| +..||++++..+...++| +++|+||+|+...++ +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 888999999999988985 889999999976432 1
Q ss_pred HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHH
Q psy11896 338 RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEIL 417 (1043)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l 417 (1043)
+.++.+.+.
T Consensus 164 ~~~~~~~~~----------------------------------------------------------------------- 172 (435)
T 1jny_A 164 KRYKEIVDQ----------------------------------------------------------------------- 172 (435)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred HHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCc
Q psy11896 418 GEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQ 485 (1043)
Q Consensus 418 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~ 485 (1043)
+...+...-....-+|++.+||++|.|+. .|+++|.. +|.|...
T Consensus 173 --------------i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~--------- 228 (435)
T 1jny_A 173 --------------VSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP--------- 228 (435)
T ss_dssp --------------HHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG---------
T ss_pred --------------HHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC---------
Confidence 00000000001113588999999999986 68888765 4445321
Q ss_pred ccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCC
Q psy11896 486 EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAG 564 (1043)
Q Consensus 486 ~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aG 564 (1043)
.+.|+.+.|..++..++ |+++++||++|+|++||.|++.+.+...+|.+|+. ...++++|.||
T Consensus 229 ------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG 292 (435)
T 1jny_A 229 ------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET----HHTKMDKAEPG 292 (435)
T ss_dssp ------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEE----TTEEESEECTT
T ss_pred ------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEE----CCcEEeEEcCC
Confidence 35677877888887777 99999999999999999999999889999999964 24789999999
Q ss_pred CEEEE--ccC---ccccCcEEe
Q psy11896 565 DIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 565 dIv~i--~gl---~~~~Gdtl~ 581 (1043)
|++++ .|+ ++.+||+|+
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEE
T ss_pred CEEEEEEecCCHHHcCCccEec
Confidence 99987 454 788999999
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=303.16 Aligned_cols=266 Identities=27% Similarity=0.337 Sum_probs=208.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..||+++||+|+|||||+++|+...... +.. .....+.+|..+.|+++|+|+......+.++++.++|||||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~---g~~--~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEG---GGA--KFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT---TSB--CCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhc---Ccc--ccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 3689999999999999999998542110 000 00001246777889999999999888888889999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
+|...+..+++.+|++|+|+|+.+|...||.++|..+...++| +++|+||+|+.. +. +.++.+.+
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~-~~~~~~~~------------ 143 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DS-EMVELVEL------------ 143 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CH-HHHHHHHH------------
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CH-HHHHHHHH------------
Confidence 9999999999999999999999999999999999999999999 579999999874 21 11111110
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+ +...+.
T Consensus 144 -----------------------------------------------~--------------------------~~~~l~ 150 (397)
T 1d2e_A 144 -----------------------------------------------E--------------------------IRELLT 150 (397)
T ss_dssp -----------------------------------------------H--------------------------HHHHHH
T ss_pred -----------------------------------------------H--------------------------HHHHHH
Confidence 0 000000
Q ss_pred HhhhcCccEEEEEeeccCCC---------C-HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 438 RSTLTRKFTPVLVGTALKNK---------G-VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~---------G-v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
+.-.....+|++.+||++|. | +..|+++|.+++|.|... .++|+.+.|+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~---------------------~~~p~~~~v~ 209 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD---------------------LEKPFLLPVE 209 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC---------------------TTSCCEEECC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC---------------------CCCcEEEEEE
Confidence 00011123689999999976 4 899999999999988532 5789999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEEc--cC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~Gdt 579 (1043)
+++.+++ |+++++||++|+|++||.|.+.+.+ .+.+|.+|... ..++++|.|||++++. |+ ++..||+
T Consensus 210 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~ 285 (397)
T 1d2e_A 210 SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLV 285 (397)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred EEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeE
Confidence 9999988 9999999999999999999987654 67789888643 3678999999999865 66 6789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 286 l~ 287 (397)
T 1d2e_A 286 MA 287 (397)
T ss_dssp EE
T ss_pred Ee
Confidence 99
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=315.37 Aligned_cols=276 Identities=22% Similarity=0.287 Sum_probs=180.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee-------e---ecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH-------E---VRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~-------~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
....++||+++||+|+|||||+++|++..+.+.... . ..+...+.+++|..+.|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 345689999999999999999999997766554320 0 011223466899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
+++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..||..++..+...++| +|+|+||||+...+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 888999999876443
Q ss_pred HH---HHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 337 YR---VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 337 ~~---~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
.. ..+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 11 1122211110
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH--------------HHHHHHHHhCCCCCCCCcc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ--------------TLLDAVLDYLPNPGEVTNY 479 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~--------------~Lld~i~~~lPsp~~~~~~ 479 (1043)
.... ....-+|++.+||++|.|+. .|++.|.+++| |..
T Consensus 348 ---------~~~g--------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~---- 399 (592)
T 3mca_A 348 ---------KMVG--------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEK---- 399 (592)
T ss_dssp ---------TTSC--------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSC----
T ss_pred ---------HhhC--------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccc----
Confidence 0000 01123689999999999998 89999999887 321
Q ss_pred ccccCcccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecC
Q psy11896 480 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 559 (1043)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~ 559 (1043)
..++|+.+.|..++.+..|++..|||.+|+|++||.|.+.+.+...+|.+|.. ...+++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~ 458 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSS 458 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSC
T ss_pred -----------------cccccchheeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCc
Confidence 15789999999999883399999999999999999999999888899999983 456899
Q ss_pred -eecCCCEEE--EccC---ccccCcEEecCCC
Q psy11896 560 -EVLAGDIFA--LFGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 560 -~a~aGdIv~--i~gl---~~~~Gdtl~~~~~ 585 (1043)
+|.|||+|+ +.|+ ++..|++|+ +++
T Consensus 459 ~~a~aG~~v~~~l~~i~~~~i~rG~vl~-~~~ 489 (592)
T 3mca_A 459 TWAVAGDTVTLQLADIEVNQLRPGDILS-NYE 489 (592)
T ss_dssp CEEETTCEEEEEESSSCGGGCCTTCEEE-CSS
T ss_pred ceecCCCEEEEEEccccccccceEEEec-cCC
Confidence 999999998 4676 678999999 443
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=289.17 Aligned_cols=239 Identities=14% Similarity=0.093 Sum_probs=192.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+||+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~-----------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG-----------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS-----------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHH-----------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 389999999999999999995 567888888888999999999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEe-ccCCCCCCH-HHHHHHHHHHhCCCceeeee
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFIN-KLDRLGADP-YRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviN-KiD~~~~~~-~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|...+.++++.+|++|+|+| .+|...||++++..+...++|. ++++| |||+ ..+. ++..+++.+.++
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~-------- 142 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITS-------- 142 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999 9999999999999999999998 99999 9998 3221 111222222111
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
..
T Consensus 143 -------------------------------------------------------------------~~----------- 144 (370)
T 2elf_A 143 -------------------------------------------------------------------GT----------- 144 (370)
T ss_dssp -------------------------------------------------------------------TS-----------
T ss_pred -------------------------------------------------------------------hc-----------
Confidence 10
Q ss_pred HHhhhcCccEEEEE--eeccC---CCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 437 RRSTLTRKFTPVLV--GTALK---NKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~--gSa~~---~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
....+|+++ +||++ |.|+++|++.|.+++|+|.... . +. ...|+..+|..++.
T Consensus 145 -----~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~--~-------------~~--~~~p~r~~v~~vf~ 202 (370)
T 2elf_A 145 -----VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAEN--A-------------EL--NSLPARIFIDHAFN 202 (370)
T ss_dssp -----TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHH--H-------------HG--GGSCCEEEEEEEEC
T ss_pred -----CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCC--c-------------cc--ccccccccceeEEE
Confidence 012369999 99999 9999999999999998761100 0 00 13455555666666
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc--cC---ccccCcEEe
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV---DCASGDTFV 581 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~Gdtl~ 581 (1043)
.++ |+++++||++|++++||+|++.+.+...+|.+|.. + .+++++|.|||++++. |+ ++.+||+|+
T Consensus 203 ~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~ 274 (370)
T 2elf_A 203 VTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIIS 274 (370)
T ss_dssp CC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEE
T ss_pred cCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEE
Confidence 666 99999999999999999999999899999999963 3 3789999999999876 55 678999999
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=296.40 Aligned_cols=276 Identities=20% Similarity=0.261 Sum_probs=179.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.... ....+..++..+|..+.|+++|+|++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3568999999999999999999998776653210 000112345678999999999999999988899999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcc-------hHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH-H
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-Y 337 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~-~ 337 (1043)
+.++|||||||.+|...+.++++.+|++|+|+|+.+|.. .||++++..+...++| +++|+||||+...++ .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999873 7999999999999998 899999999975432 1
Q ss_pred HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHH
Q psy11896 338 RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEIL 417 (1043)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l 417 (1043)
+.++.+.+.+ .+.
T Consensus 201 ~~~~~i~~e~-----------------------------------------------------------~~~-------- 213 (467)
T 1r5b_A 201 ERYKECVDKL-----------------------------------------------------------SMF-------- 213 (467)
T ss_dssp HHHHHHHHHH-----------------------------------------------------------HHH--------
T ss_pred HHHHHHHHHH-----------------------------------------------------------HHH--------
Confidence 1111111100 000
Q ss_pred HHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH--------------HHHHHHHhCCCCCCCCcccccc
Q psy11896 418 GEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT--------------LLDAVLDYLPNPGEVTNYAIEN 483 (1043)
Q Consensus 418 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------Lld~i~~~lPsp~~~~~~~~~~ 483 (1043)
+..++ .+.. ..-+|++.+||++|.|+.. |++.| +.+|.|...
T Consensus 214 l~~~~---g~~~-------------~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~------- 269 (467)
T 1r5b_A 214 LRRVA---GYNS-------------KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERK------- 269 (467)
T ss_dssp HHHHH---CCCH-------------HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHH-------
T ss_pred HHHhc---CCCc-------------cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCC-------
Confidence 00000 0000 1136889999999999875 45554 446655321
Q ss_pred CcccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecC
Q psy11896 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLA 563 (1043)
Q Consensus 484 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~a 563 (1043)
.++|+.+.|..++.+ .|+++.|||.+|+|++||.|.+.+.+...+|.+|+.. ...++++|.|
T Consensus 270 --------------~~~p~~~~v~~~~~~-~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~a~a 331 (467)
T 1r5b_A 270 --------------VNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISSSIC 331 (467)
T ss_dssp --------------HTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESEEET
T ss_pred --------------CCCCcEEEEEEEEeC-CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeEEcC
Confidence 467899999888764 5899999999999999999999888888899988732 2578999999
Q ss_pred CCEEEE--cc-C-ccccCcEEe
Q psy11896 564 GDIFAL--FG-V-DCASGDTFV 581 (1043)
Q Consensus 564 GdIv~i--~g-l-~~~~Gdtl~ 581 (1043)
||.+++ .| . ++..||+|+
T Consensus 332 G~~v~i~l~g~~~~i~rG~vl~ 353 (467)
T 1r5b_A 332 GDQVRLRVRGDDSDVQTGYVLT 353 (467)
T ss_dssp TCEEEEEEESCCTTCCTTCEEE
T ss_pred CCEEEEEEeccHhhCCceEEEe
Confidence 999987 55 4 788999999
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=309.18 Aligned_cols=268 Identities=25% Similarity=0.322 Sum_probs=197.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....||+++||+|+|||||+++|+...... +.. .....+.+|..+.|+++|+|++.....+.++++.++||||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~---G~a--~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKT---YGG--AARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHH---SCC-----------------------CCSCEEEECSSCEEEEEECCC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccc---ccc--ccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 446899999999999999999998542100 000 000012567888999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+..+++.+|++|+|+|+.+|...||.+++..+...++| +++|+||||+.. +. +.++.+.+.
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~-e~le~i~eE--------- 437 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DE-ELLELVEME--------- 437 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CH-HHHHHHHHH---------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-ch-hhHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 689999999974 21 111111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+ ..++
T Consensus 438 --------------------------------------------------i------------~elL------------- 442 (1289)
T 3avx_A 438 --------------------------------------------------V------------RELL------------- 442 (1289)
T ss_dssp --------------------------------------------------H------------HHHH-------------
T ss_pred --------------------------------------------------H------------HHHH-------------
Confidence 0 0000
Q ss_pred HHHhhhcCccEEEEEeeccCC--------CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKN--------KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~--------~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
.+.-.....+|++.+||++| .|+..|+++|.+++|.|... .++|+.+.|.
T Consensus 443 -k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~---------------------~d~Pfr~pId 500 (1289)
T 3avx_A 443 -SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA---------------------IDKPFLLPIE 500 (1289)
T ss_dssp -HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG---------------------GGSCCEEECC
T ss_pred -HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc---------------------cccceeeecc
Confidence 00001122368999999999 57999999999999987532 5689999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
.++.+++ |+++++||++|+|++||.|.+.+.+ ...+|.+|.. ...++++|.|||++++ .|+ ++..||+
T Consensus 501 ~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 501 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccE
Confidence 9998887 9999999999999999999988766 6788999863 3467899999999986 466 6789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 577 L~ 578 (1289)
T 3avx_A 577 LA 578 (1289)
T ss_dssp EE
T ss_pred Ee
Confidence 99
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=291.31 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=199.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee---------e-ecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------E-VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...||+++|++|+|||||+++|++..+.+.... . ..+...+++++|....|+++|+|++.....+.++++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 357899999999999999999998866554310 0 112233466789999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++|||||||.+|...+..+++.+|++|+|+|+.+| +..|+.+++..+...++| +++|+||+|+...+. ..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~-~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-QR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH-HH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH-HH
Confidence 999999999999999999999999999999999998 678999999999888865 899999999875332 11
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++++.+.+
T Consensus 191 ~~~i~~~~------------------------------------------------------------------------ 198 (483)
T 3p26_A 191 FEEIKSKL------------------------------------------------------------------------ 198 (483)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111100
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------------HHHHHHHhCCC--CCCCCcc
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------------LLDAVLDYLPN--PGEVTNY 479 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------------Lld~i~~~lPs--p~~~~~~ 479 (1043)
...+.+.-.....+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 199 -------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~---- 261 (483)
T 3p26_A 199 -------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI---- 261 (483)
T ss_dssp -------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC----
T ss_pred -------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc----
Confidence 00001111112247899999999999863 45555545554 321
Q ss_pred ccccCcccceeeeCCCCCCCCCcEEEEEeeeecC----CccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEec----
Q psy11896 480 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK----FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH---- 551 (1043)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~----~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~---- 551 (1043)
..+.|+.+.|..++..+ .|++..|||.+|+|++||.|.+.+.+.+.+|.+|....
T Consensus 262 -----------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~ 324 (483)
T 3p26_A 262 -----------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQ 324 (483)
T ss_dssp -----------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC--
T ss_pred -----------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCcccc
Confidence 15789999999888765 38999999999999999999999999899999998653
Q ss_pred cCCeeecCeecCCCEEEE--ccC---ccccCcEEecCCC
Q psy11896 552 SNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 552 g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~~~~ 585 (1043)
|..+.++++|.|||+|++ .+. ++..||+|+ +++
T Consensus 325 ~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~-~~~ 362 (483)
T 3p26_A 325 STNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVD 362 (483)
T ss_dssp ---CCEESCEETTCEEEEEEESCCGGGCCTTCEEE-CTT
T ss_pred ccccccccEECCCCEEEEEEEecccccCCceEEEE-cCC
Confidence 445688999999999987 343 788999999 443
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=288.17 Aligned_cols=252 Identities=25% Similarity=0.321 Sum_probs=192.7
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------- 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 265 (1043)
....+||+++||+|+|||||+++|+.. ..|..+.|.++|+|+...+..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~------------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~ 68 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV------------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC------------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEES
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC------------------ccccChhhhcCCcEEEEeeeeeecccccccccccc
Confidence 456789999999999999999999621 2455668889999998877665541
Q ss_pred -------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccC
Q psy11896 266 -------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLD 330 (1043)
Q Consensus 266 -------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD 330 (1043)
...++|||||||.+|...+.+++..+|++|+|+|+.+|. ..||.+++..+...++ |+++|+||+|
T Consensus 69 ~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp SSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred cccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECcc
Confidence 168999999999999999999999999999999999998 8999999988887776 6889999999
Q ss_pred CCCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHH
Q psy11896 331 RLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEH 409 (1043)
Q Consensus 331 ~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~ 409 (1043)
+...+. .+.++++.+
T Consensus 149 l~~~~~~~~~~~~i~~---------------------------------------------------------------- 164 (410)
T 1kk1_A 149 LVDKEKALENYRQIKE---------------------------------------------------------------- 164 (410)
T ss_dssp GSCHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 874221 011111111
Q ss_pred HhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccce
Q psy11896 410 VAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK 489 (1043)
Q Consensus 410 l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 489 (1043)
|+.+. ....+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 165 -----------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~------------- 204 (410)
T 1kk1_A 165 -----------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRD------------- 204 (410)
T ss_dssp -----------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-------------
T ss_pred -----------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-------------
Confidence 11110 01236899999999999999999999999988532
Q ss_pred eeeCCCCCCCCCcEEEEEeeeec--------CC-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEE
Q psy11896 490 VVLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLV 548 (1043)
Q Consensus 490 ~~~~~~~~~~~p~~~~V~K~~~d--------~~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~ 548 (1043)
.+.|+.+.|...+.. ++ |.++++||++|+|++||.|.+.+.++ ..+|.+|+
T Consensus 205 --------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~ 276 (410)
T 1kk1_A 205 --------PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ 276 (410)
T ss_dssp --------TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred --------cCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE
Confidence 467888888776643 33 88999999999999999999875432 34566665
Q ss_pred EeccCCeeecCeecCCCEEEEc-c----C---ccccCcEEe
Q psy11896 549 RLHSNEMEDVEEVLAGDIFALF-G----V---DCASGDTFV 581 (1043)
Q Consensus 549 ~~~g~~~~~v~~a~aGdIv~i~-g----l---~~~~Gdtl~ 581 (1043)
....++++|.|||++++. + + ++..|++|+
T Consensus 277 ----~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 277 ----AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp ----ETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred ----ECCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 235789999999988874 2 2 456799998
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=286.91 Aligned_cols=273 Identities=23% Similarity=0.270 Sum_probs=202.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceee------------eeecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEM------------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
...++|+++||+|+|||||+++|++..+.+... +.......+...+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999776544221 11111112234578899999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i 343 (1043)
++..++|||||||.+|...+..+++.+|++|+|+|+.+|...||.+++..+...++| +++|+||+|+...+.+ .++.+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~-~~~~i 180 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER-VFESI 180 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH-HHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH-HHHHH
Confidence 999999999999999999999999999999999999999999999999998888885 8899999999764421 11111
Q ss_pred HHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 344 RQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.+.+ ..+++
T Consensus 181 ~~~~-----------------------------------------------------------------------~~~~~ 189 (434)
T 1zun_B 181 KADY-----------------------------------------------------------------------LKFAE 189 (434)
T ss_dssp HHHH-----------------------------------------------------------------------HHHHH
T ss_pred HHHH-----------------------------------------------------------------------HHHHH
Confidence 1100 00000
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceee
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 491 (1043)
... ......|++.+||++|.|++. |++. .+.+|.|...
T Consensus 190 ~~g--------------~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~~--------------- 239 (434)
T 1zun_B 190 GIA--------------FKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASDR--------------- 239 (434)
T ss_dssp TTT--------------CCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTCC---------------
T ss_pred HhC--------------CCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcccC---------------
Confidence 000 001236899999999999986 5553 4446655321
Q ss_pred eCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 492 ~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
.+.|+.+.|..++...+ |+...|||.+|+|++||.|.+.+.+...+|.+|.... .++++|.||+++++.
T Consensus 240 ------~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~ 309 (434)
T 1zun_B 240 ------NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLT 309 (434)
T ss_dssp ------CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEE
T ss_pred ------CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEE
Confidence 46788888887766544 7788999999999999999999888889999998543 479999999999987
Q ss_pred cC---ccccCcEEe
Q psy11896 571 GV---DCASGDTFV 581 (1043)
Q Consensus 571 gl---~~~~Gdtl~ 581 (1043)
.. ++..||+|+
T Consensus 310 l~~~~~i~~G~~l~ 323 (434)
T 1zun_B 310 MEDEIDISRGDLLV 323 (434)
T ss_dssp ESSCCCCCTTCEEE
T ss_pred eCCccccCCccEEE
Confidence 64 578999999
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=289.08 Aligned_cols=273 Identities=23% Similarity=0.282 Sum_probs=209.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee---------ee-cCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------EV-RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...+|+++||+|+|||||+++|++..+.+.... +. .+...++.++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 457899999999999999999997755443210 00 11123345678899999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcch-------HHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-------QTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~-------~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++|||||||.+|...+..+++.+|++|+|+|+.+|... ||.+++..+...++| +++|+||+|+...+.+ .
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~-~ 164 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES-R 164 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH-H
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH-H
Confidence 999999999999999999999999999999999998766 999999998889997 8899999998743321 1
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++.+.+.+
T Consensus 165 ~~~i~~~~------------------------------------------------------------------------ 172 (458)
T 1f60_A 165 FQEIVKET------------------------------------------------------------------------ 172 (458)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111100
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------------------HHHHHHHHhCCCCCC
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------------------TLLDAVLDYLPNPGE 475 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------------------~Lld~i~~~lPsp~~ 475 (1043)
...+...-.....+|++.+||++|.|+. .|++++.. +|.|..
T Consensus 173 -------------~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~ 238 (458)
T 1f60_A 173 -------------SNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR 238 (458)
T ss_dssp -------------HHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCC
T ss_pred -------------HHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcc
Confidence 0000000000012577888999998875 46777554 444421
Q ss_pred CCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCC
Q psy11896 476 VTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554 (1043)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~ 554 (1043)
..+.|+.+.|..++.+++ |+++.|||.+|+++.||.|.+.+.+...+|.+|.. .
T Consensus 239 ---------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~ 293 (458)
T 1f60_A 239 ---------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM----H 293 (458)
T ss_dssp ---------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE----T
T ss_pred ---------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE----C
Confidence 157899999999999887 99999999999999999999998888899999973 2
Q ss_pred eeecCeecCCCEEEE--ccC---ccccCcEEec
Q psy11896 555 MEDVEEVLAGDIFAL--FGV---DCASGDTFVT 582 (1043)
Q Consensus 555 ~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~ 582 (1043)
..++++|.|||.+++ .|+ +++.|++|+.
T Consensus 294 ~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred CeEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 467899999999886 466 6789999993
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=294.90 Aligned_cols=286 Identities=19% Similarity=0.238 Sum_probs=215.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceee---------ee-ecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEM---------HE-VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~---------~~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....+|+++||+|+|||||+++|++..+.+... .. ..+...+++++|..+.|+.+|+|++.....+.+++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345789999999999999999999876665431 00 11223346678999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYR 338 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~ 338 (1043)
+.++|||||||.+|...+..+++.+|++|+|+|+.+| ...|+..++..+...++| +++|+||+|+...+. .
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~-~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH-H
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH-H
Confidence 9999999999999999999999999999999999987 578999999999988876 889999999975332 1
Q ss_pred HHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHH
Q psy11896 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILG 418 (1043)
Q Consensus 339 ~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~ 418 (1043)
.++.+.+.+
T Consensus 324 ~~~ei~~~l----------------------------------------------------------------------- 332 (611)
T 3izq_1 324 RFEEIKSKL----------------------------------------------------------------------- 332 (611)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111100
Q ss_pred HHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCcccccc
Q psy11896 419 EMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT---------------LLDAVLDYLPNPGEVTNYAIEN 483 (1043)
Q Consensus 419 ~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~---------------Lld~i~~~lPsp~~~~~~~~~~ 483 (1043)
...+.+.-.....+|++.+||++|.|+.. |++.+....+.+....
T Consensus 333 --------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~------ 392 (611)
T 3izq_1 333 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN------ 392 (611)
T ss_dssp --------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSS------
T ss_pred --------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccC------
Confidence 00001101111246889999999999974 4444443322111000
Q ss_pred CcccceeeeCCCCCCCCCcEEEEEeeeecC---C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEec----cCCe
Q psy11896 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGK---F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH----SNEM 555 (1043)
Q Consensus 484 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~----g~~~ 555 (1043)
+.+..+.|+.+.|..++..+ + |++..|||.+|+|++||.|.+.+.+.+.+|.+|.... |..+
T Consensus 393 ----------p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~ 462 (611)
T 3izq_1 393 ----------EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNH 462 (611)
T ss_dssp ----------SCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSC
T ss_pred ----------cccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccc
Confidence 01126789999998888875 3 8999999999999999999999999889999998552 5567
Q ss_pred eecCeecCCCEEEE--ccC---ccccCcEEecCCC
Q psy11896 556 EDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 556 ~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~~~~ 585 (1043)
.++++|.|||+|++ .|+ ++..|++|+ +++
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~-~~~ 496 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVD 496 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCTTCEEB-CST
T ss_pred cccceecCCCcceEEeeeccHhhCcceEEcc-CCC
Confidence 89999999999997 454 788999999 443
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=275.46 Aligned_cols=251 Identities=21% Similarity=0.264 Sum_probs=182.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe------------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW------------ 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 264 (1043)
+...||+++||+|+|||||+++|+.. ..|....|.++|+|+...+....+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~------------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 67 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV------------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTK 67 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC------------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC------------------ccccCcccccCCcEEEeccccccccccccccccccc
Confidence 34689999999999999999999621 245556788999999877654433
Q ss_pred ---c--------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccCC
Q psy11896 265 ---K--------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDR 331 (1043)
Q Consensus 265 ---~--------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD~ 331 (1043)
. .+.++|||||||.+|...+.+++..+|++|+|+|+.+|. ..||.+++..+...++ |+++|+||+|+
T Consensus 68 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp SBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred ccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 1 168999999999999999999999999999999999998 8999999988877776 68899999998
Q ss_pred CCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHH
Q psy11896 332 LGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV 410 (1043)
Q Consensus 332 ~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l 410 (1043)
...+. .+.++++.+
T Consensus 148 ~~~~~~~~~~~~i~~----------------------------------------------------------------- 162 (408)
T 1s0u_A 148 VDEKQAEENYEQIKE----------------------------------------------------------------- 162 (408)
T ss_dssp SCTTTTTTHHHHHHH-----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 75331 111111111
Q ss_pred hcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 411 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 411 ~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
++.+. ...-+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 163 ----------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~-------------- 202 (408)
T 1s0u_A 163 ----------FVKGT----------------IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRD-------------- 202 (408)
T ss_dssp ----------HHTTS----------------TTTTCCEEEC------CHHHHHHHHHHHSCCCCCC--------------
T ss_pred ----------HHhhc----------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc--------------
Confidence 11100 01235889999999999999999999999987421
Q ss_pred eeCCCCCCCCCcEEEEEeeeec--------CC-ccEEEEEEecCeecCCCEEEecCCC------------cEEEeceEEE
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGKLRKGEMIYNVRTD------------KKVRVSRLVR 549 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d--------~~-G~i~~~RV~sGtl~~gd~v~~~~~~------------~~~ki~~l~~ 549 (1043)
.+.|+.+.|...+.. ++ |.++.+||.+|+|++||.|.+.+.+ ...+|.+|+.
T Consensus 203 -------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~ 275 (408)
T 1s0u_A 203 -------PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA 275 (408)
T ss_dssp -------TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE
T ss_pred -------CCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE
Confidence 567888888877643 22 7899999999999999999986532 2568888873
Q ss_pred eccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 550 LHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 550 ~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
...++++|.|||.+++. ++ +...|++|+
T Consensus 276 ----~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 276 ----GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp ----TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred ----CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 34689999999999983 23 556899998
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=285.98 Aligned_cols=258 Identities=24% Similarity=0.294 Sum_probs=189.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++||+|+|||||+++|+.... ...+|..+.|+++|+|++.....+.++++.++|||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~--------------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCc--------------ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 357899999999999999999973321 234677788999999999998889999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+..+++.+|++|+|+|+.+|+..||.+++..+...++|.++|+||+|+... +.++.+.+
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~---~~~~~~~~------------ 148 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT---EEIKRTEM------------ 148 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH---HHHHHHHH------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc---hhHHHHHH------------
Confidence 999999999999999999999999999999999999999999999999999998741 11111111
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
++. .++.
T Consensus 149 -----------------------------------------------~l~------------~~l~-------------- 155 (482)
T 1wb1_A 149 -----------------------------------------------IMK------------SILQ-------------- 155 (482)
T ss_dssp -----------------------------------------------HHH------------HHHH--------------
T ss_pred -----------------------------------------------HHH------------HHHh--------------
Confidence 000 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
.. ......|++.+||++|.|++.|++.|.+.+|.|.... +.++|+.+.|..++..++ |.
T Consensus 156 ~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~-------------------~~~~~~~~~v~~v~~~~g~G~ 215 (482)
T 1wb1_A 156 ST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR-------------------NTESYFKMPLDHAFPIKGAGT 215 (482)
T ss_dssp HS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC-------------------CSSSCCBCBCSCEECCSSCCC
T ss_pred hh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc-------------------cccccccccceeEEEecCCce
Confidence 00 0001358889999999999999999999887551100 145677777777777766 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
++.+||.+|++++||.|...+.+...+|..|.. ...++++|.||+.+++ .|+ ++..||+|+
T Consensus 216 v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 216 VVTGTINKGIVKVGDELKVLPINMSTKVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp EECCCCCBSCCCSSEEECCTTTCCCEEECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 999999999999999999988887788888872 3467899999999876 476 568899994
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-29 Score=289.49 Aligned_cols=300 Identities=24% Similarity=0.272 Sum_probs=215.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+.++|+++||+|+|||||+++|+... +. ....+|+|++.....+.+++..++|||||||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--------v~-------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--------VA-------------SGEAGGITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--------HS-------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--------Cc-------------cccCCCeeEeEEEEEEEECCEEEEEEECCCc
Confidence 45789999999999999999997321 00 1224788888877778888899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++++.+|++++|+|+.+|+.+||.+++..+...++|+++++||+|+..+++++..+ .+.
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~----~l~--------- 128 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKN----ELS--------- 128 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTC----CCC---------
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHH----HHH---------
Confidence 9999999999999999999999999999999999999999999999999999997654211000 000
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+.. ++.+
T Consensus 129 ------------------------------------------------------~~~------~~~~------------- 135 (501)
T 1zo1_I 129 ------------------------------------------------------QYG------ILPE------------- 135 (501)
T ss_dssp ------------------------------------------------------CCC------CCTT-------------
T ss_pred ------------------------------------------------------Hhh------hhHH-------------
Confidence 000 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+|++++||++|.|+++|+++|......+.. .. .++.|+.+.|++.+.+++ |.
T Consensus 136 ---~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~-----------------~~--~~~~~~~~~V~e~~~d~g~G~ 193 (501)
T 1zo1_I 136 ---EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLEL-----------------KA--VRKGMASGAVIESFLDKGRGP 193 (501)
T ss_dssp ---CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTT-----------------TS--CCCSBCEEEEEEEEECSSSSE
T ss_pred ---HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhcc-----------------cc--ccccccccceEEEEEeCCcEE
Confidence 01123699999999999999999998764211100 01 167889999999999987 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-c-cccCcEEecCCCCcc------
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D-CASGDTFVTDKNNSI------ 588 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~Gdtl~~~~~~~~------ 588 (1043)
++++||++|+|++||.+.+... ..+|..+. +.+..++++|.||+.+.+.|+ + ...||+++...+...
T Consensus 194 v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~ 268 (501)
T 1zo1_I 194 VATVLVREGTLHKGDIVLCGFE--YGRVRAMR---NELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVAL 268 (501)
T ss_dssp EEEEEEEESBCCTTCEEEEEBS--SCEEEEEC---CTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSC
T ss_pred EEEEEEEeeEEecCCEEEEccc--eeEEEEEE---ecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHH
Confidence 9999999999999999987542 23444443 334456889999999998898 4 368999873111000
Q ss_pred -----------------cccCCC--C---CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEE
Q psy11896 589 -----------------SLESIY--V---ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHF 631 (1043)
Q Consensus 589 -----------------~~~~~~--~---~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~ 631 (1043)
.+..+. + ..+.+.+.|.+......+.|.++|.+|..++..+.+
T Consensus 269 ~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v 333 (501)
T 1zo1_I 269 YRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI 333 (501)
T ss_dssp BTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCC
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEE
Confidence 111110 1 233455666666666677777777777666655544
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=268.28 Aligned_cols=262 Identities=20% Similarity=0.212 Sum_probs=186.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-----ecCeeEEEE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-----WKDHNINII 272 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~li 272 (1043)
...+|+++||+|+|||||+++|+....... .+.... +.......+..++++......... .....++||
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAET-----NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEE-----EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-cCcccc-----ceeeccccccccceecccccccccccccccccceEEEE
Confidence 356899999999999999999985322110 000000 000001112233333322111111 123789999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccCCCCCCH-HHHHHHHHHHhCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKVGH 349 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~-~~~~~~i~~~l~~ 349 (1043)
|||||.+|...+..+++.+|++++|+|+.+|. ..||.+++..+...+. |+++|+||+|+...+. .+..+++.+.+
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l-- 158 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT-- 158 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999998 9999999998888776 8999999999874221 11111111111
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
.+
T Consensus 159 -------------------------------------------------------------------------~~----- 160 (403)
T 3sjy_A 159 -------------------------------------------------------------------------KG----- 160 (403)
T ss_dssp -------------------------------------------------------------------------TT-----
T ss_pred -------------------------------------------------------------------------Hh-----
Confidence 00
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
.....+|++.+||++|.|++.|+++|.+++|.|... .+.|+.+.|.+.
T Consensus 161 -----------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~---------------------~~~~~~~~v~~~ 208 (403)
T 3sjy_A 161 -----------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD---------------------LSQKPVMLVIRS 208 (403)
T ss_dssp -----------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEE
T ss_pred -----------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC---------------------CCCCcEEEEEEE
Confidence 011235899999999999999999999999887532 567889998877
Q ss_pred ee--------cCC-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEEEeccCCeeecCeecCCCEEE
Q psy11896 510 EA--------GKF-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFA 568 (1043)
Q Consensus 510 ~~--------d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~~~~g~~~~~v~~a~aGdIv~ 568 (1043)
+. +++ |.++++||.+|++++||+|.+.+.+. ..+|.+|.. ...++++|.|||+++
T Consensus 209 ~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~ 284 (403)
T 3sjy_A 209 FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVA 284 (403)
T ss_dssp ECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEE
T ss_pred EeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEE
Confidence 64 233 89999999999999999999875443 468888873 467899999999999
Q ss_pred Ec-----cC---ccccCcEEe
Q psy11896 569 LF-----GV---DCASGDTFV 581 (1043)
Q Consensus 569 i~-----gl---~~~~Gdtl~ 581 (1043)
+. ++ |...|++|+
T Consensus 285 ~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 285 IGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEESSCHHHHGGGTTTTCEEE
T ss_pred EEeccccccchhhhccccEEe
Confidence 83 33 567899998
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-27 Score=282.74 Aligned_cols=249 Identities=25% Similarity=0.288 Sum_probs=194.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGH 277 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~ 277 (1043)
.++|+++||+|+|||||+++|+... ......+|+|.+.....+.+ ++..++|||||||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~---------------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ---------------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH---------------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 3579999999999999999997321 11223567777776666666 5678999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++++.+|++|+|+|+.+|..+||..+|..+...++|+++|+||+|+..++.....+.+.+ ++
T Consensus 63 e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~--------- 132 (537)
T 3izy_P 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA-YD--------- 132 (537)
T ss_dssp CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH-TT---------
T ss_pred HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHh-hh---------
Confidence 99999999999999999999999999999999999999999999999999999875432111111000 00
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
.+.+
T Consensus 133 --------------------------------------------------------------~~~e-------------- 136 (537)
T 3izy_P 133 --------------------------------------------------------------VVCE-------------- 136 (537)
T ss_dssp --------------------------------------------------------------SCCC--------------
T ss_pred --------------------------------------------------------------hhHH--------------
Confidence 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+|++.+||++|.|+++|+++|...++.+... . ++++|+.+.|++.+.+++ |+
T Consensus 137 ---~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~-----------------~--~~~~~~~~~V~e~~~~~g~G~ 194 (537)
T 3izy_P 137 ---DYGGDVQAVHVSALTGENMMALAEATIALAEMLELK-----------------A--DPTGAVEGTVIESFTDKGRGP 194 (537)
T ss_dssp ---CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCC-----------------C--CSSSSEEEEEEEECCCTTCCC
T ss_pred ---hcCCCceEEEEECCCCCCchhHHHHHHHhhhccccc-----------------C--CCCCCcceeEEEEEEeCCCce
Confidence 012346899999999999999999999887644211 1 167899999999999988 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
++.++|.+|+|++||.+... ....+|..|+...| .++++|.||++|+|.|+ +. ..||+|+
T Consensus 195 V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 195 VTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CEEEEEEEECCSSEEEECCS--SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEE
Confidence 99999999999999998543 23457777764444 67899999999999999 43 7899998
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=256.71 Aligned_cols=110 Identities=47% Similarity=0.722 Sum_probs=105.7
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|++++|+++|+|+......+.|++++|+|+|||||.||..++.++++.+|++|+|||+.+|+..|++.+|+++...
T Consensus 39 ~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~ 118 (638)
T 3j25_A 39 TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 118 (638)
T ss_dssp CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++|.++++||+|++..+....++++++.++
T Consensus 119 ~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 119 GIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp TCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred CCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 999999999999999999888999988775
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-21 Score=235.44 Aligned_cols=111 Identities=53% Similarity=0.886 Sum_probs=87.9
Q ss_pred cccCCChhhhhhcCCccccceEEEEec-------CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~-------~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~ 94 (1043)
++++|+.++|+++|+|+......+.|. ++.++|||||||.||..++.++++.+|++|+|||+.+|++.|++.+
T Consensus 50 ~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v 129 (709)
T 4fn5_A 50 AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129 (709)
T ss_dssp ------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH
Confidence 568999999999999999999999885 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
|+++.+.++|.++++||+|+...+....+++++..++.
T Consensus 130 ~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 130 WRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp HHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999887754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=222.97 Aligned_cols=129 Identities=53% Similarity=0.857 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecC-------eeEEEEeC
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKD-------HNINIIDT 57 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~-------~~i~liDT 57 (1043)
+++.|+ |..++||||... .+++|+.+.|+++|+|+......+.+++ +.++||||
T Consensus 11 ~~I~Ii-G~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 11 RNIGIS-AHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 466677 999999999721 2567888999999999999988888887 89999999
Q ss_pred CCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 58 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 58 PG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
|||.+|...+..+++.+|++|+|+|++++...++..+|+.+...++|+++|+||+|+...+..+.++++++.++.
T Consensus 90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999988889999999999999887887888888776543
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=230.55 Aligned_cols=127 Identities=52% Similarity=0.796 Sum_probs=98.5
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||||... .+++|+.+.|+++|+|+......+.++++.++|||||||.+|.
T Consensus 13 ~~I~Iv-G~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 13 RNIGIA-AHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 466677 999999999832 2457888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhh
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKT 130 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~ 130 (1043)
..+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+.++++++.+
T Consensus 92 ~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l 157 (691)
T 1dar_A 92 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157 (691)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988999999999999998878777777777655
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=225.41 Aligned_cols=150 Identities=43% Similarity=0.624 Sum_probs=111.1
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||+|... .+++|+.+.|+++|+|+......+.+++++++|||||||.+|.
T Consensus 11 ~~I~Iv-G~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 11 RNIGIM-AHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEE-CCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 456666 999999998721 1456888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++.+...++..+|..+...++|+++|+||+|+...+..+.++.+++.++.
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~------------ 157 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA------------ 157 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCC------------
Confidence 99999999999999999999999999999999998899999999999999887777777777776531
Q ss_pred ccceeeeeeeecccCCcchHHHH
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTER 167 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~ 167 (1043)
......+|+|+ +.|++.+.+.
T Consensus 158 ~~~~~~ipisa--~~~~~~l~d~ 178 (693)
T 2xex_A 158 NAAPIQLPIGA--EDEFEAIIDL 178 (693)
T ss_dssp CEEESEEEECC--GGGCCEEEET
T ss_pred CceeEEeeccc--CCCcceeeee
Confidence 12234678887 6666655443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=218.37 Aligned_cols=126 Identities=22% Similarity=0.342 Sum_probs=110.4
Q ss_pred cceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 4 KVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
++.|+ |..++||||... .++.|+.+.|+++|+|+......+.+.++.++|||||||.+|..
T Consensus 11 ~i~Ii-G~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~ 89 (665)
T 2dy1_A 11 TVALV-GHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 89 (665)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHH
Confidence 45555 999999998721 24567888899999999999999999999999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+..+++.+|++++|+|+++++..++..+++.+...++|+++|+||+|+. ....+..+++.+.++
T Consensus 90 ~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 90 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988999999999999998 777777777776553
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=200.46 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=137.0
Q ss_pred ccceeeeeecccccccC-------------------------------CccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKD-------------------------------NVGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~-------------------------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|. .++|++|..+.|+++|+|++.....+++++++
T Consensus 18 ~~i~ii-G~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 18 VNVVFI-GHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 456666 8888888775 24568999999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc-------hhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~-------~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++.. .++.+++..+...++| +|+|+||+|+...+. +..
T Consensus 97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~ 176 (439)
T 3j2k_7 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 176 (439)
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHH
Confidence 9999999999999999999999999999999998875 5888888888888999 999999999964332 222
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHET 181 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~ 181 (1043)
.+.+.+.+..++...++... ...+++++||++|.|++++.+.+.|+.++ +.+.++.
T Consensus 177 ~~~i~~~~~~~l~~~g~~~~---~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~ 233 (439)
T 3j2k_7 177 YEECKEKLVPFLKKVGFNPK---KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN 233 (439)
T ss_pred HHHHHHHHHHHHHHhccccc---CCeeEEEeeccCCcccccccccccccCchHHHHHHHh
Confidence 34444444444333332211 13578999999999999999888888776 4444443
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=198.78 Aligned_cols=111 Identities=32% Similarity=0.558 Sum_probs=91.9
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|++++|+++|+|+......+.|++++|+|||||||.||..++.++++.+|++|+||||.+|+..|++.+|+++.+.
T Consensus 72 ~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 72 HATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR 151 (548)
T ss_dssp ----------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
++|.++++||+|+..++..+.++++++.++.
T Consensus 152 ~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 152 ATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp TCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred CCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 9999999999999999999999999988753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=178.43 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=95.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG 276 (1043)
.--.|+++|++|+|||||+|+|+.....+ .....++|.......+.++ +.+++||||||
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i--------------------~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG 68 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI--------------------ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--------------------CCSSSCCCCSCEEEEEEETTTEEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc--------------------cCCCCCceeeEEEEEEecCCCCeEEEEECcC
Confidence 34679999999999999999998443211 1235567777777777888 99999999999
Q ss_pred CCCch----------HHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDFT----------VEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~----------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 97755 566788899999999999999999999988 677777899999999999986
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=178.64 Aligned_cols=116 Identities=23% Similarity=0.206 Sum_probs=93.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+|+|+.....+. ....++|.+.....+.+++.+++||||||+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv--------------------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~ 65 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI--------------------SPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC--------------------CSSSCCCCSCEEEEEEETTEEEEEEECCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee--------------------cCCCCceeEEEEEEEEeCCcEEEEecCccc
Confidence 456899999999999999999985432211 112344544444456678999999999999
Q ss_pred CC--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 278 VD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
.+ |...+..+++.+|++++|+|+.++....+..+++.+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 87 667778889999999999999999888888888888777 899999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-18 Score=192.45 Aligned_cols=243 Identities=14% Similarity=0.089 Sum_probs=151.8
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHh
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQK 129 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~ 129 (1043)
+.-+|+| +++|.+.+..+.+.++++++|+|+++........+.+.+ .++|+++|+||+|+...+ .+...+.+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 4444554 778888888888999999999999976544433333333 278999999999997532 22222222222
Q ss_pred hhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeec
Q psy11896 130 TSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHID 209 (1043)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~ 209 (1043)
+ +. ......+++.+||++|.|+++|++.+..+.. -++++++|.+|
T Consensus 128 ~----~~------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~-------------------------~~~i~~vG~~n 172 (369)
T 3ec1_A 128 A----EE------LGLCPVDVCLVSAAKGIGMAKVMEAINRYRE-------------------------GGDVYVVGCTN 172 (369)
T ss_dssp H----HT------TTCCCSEEEECBTTTTBTHHHHHHHHHHHHT-------------------------TSCEEEECCTT
T ss_pred H----HH------cCCCcccEEEEECCCCCCHHHHHHHHHhhcc-------------------------cCcEEEEcCCC
Confidence 1 11 1112236789999999999999998876531 14699999999
Q ss_pred CCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-------H
Q psy11896 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------V 282 (1043)
Q Consensus 210 ~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-------~ 282 (1043)
+|||||+|+|+....... ........+|+|....... +. ..+.++||||..+.. .
T Consensus 173 vGKStliN~L~~~~~~~~---------------~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 173 VGKSTFINRIIEEATGKG---------------NVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp SSHHHHHHHHHHHHHHTT---------------CCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSGGGGSCT
T ss_pred CchHHHHHHHHhhccCCc---------------cceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHHHHHHhH
Confidence 999999999985410000 0001123556776654433 22 348999999975432 1
Q ss_pred HHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCCC
Q psy11896 283 EVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 283 e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~~ 350 (1043)
+....+ ...|.+++++++...........+.++...+.|+++++||+|.... ..+...+.+++.++..
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL 306 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence 223333 6789999999995321111111133334567899999999998743 3455667777888753
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=189.60 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=146.2
Q ss_pred CCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhcccc
Q psy11896 59 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISN 136 (1043)
Q Consensus 59 G~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~ 136 (1043)
..++|.+.+..+.+.+|++++|+|+++........+.+.+ .++|+++|+||+|+.... .+...+.+...+ ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~----~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA----KQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH----HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHH----HH
Confidence 3467888888888899999999999863211111222221 378999999999996532 222222222211 11
Q ss_pred ccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHH
Q psy11896 137 ESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 216 (1043)
Q Consensus 137 ~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~ 216 (1043)
......+++.+||++|.|+++|++.+..+.. -++++++|.+|+|||||+
T Consensus 129 ------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~-------------------------~~~i~~vG~~nvGKStli 177 (368)
T 3h2y_A 129 ------LGLKPEDVFLISAAKGQGIAELADAIEYYRG-------------------------GKDVYVVGCTNVGKSTFI 177 (368)
T ss_dssp ------TTCCCSEEEECCTTTCTTHHHHHHHHHHHHT-------------------------TSCEEEEEBTTSSHHHHH
T ss_pred ------cCCCcccEEEEeCCCCcCHHHHHhhhhhhcc-------------------------cceEEEecCCCCChhHHH
Confidence 1111236789999999999999999875431 146999999999999999
Q ss_pred hHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-------HHHHHH--
Q psy11896 217 ERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------VEVERA-- 287 (1043)
Q Consensus 217 ~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-------~e~~~~-- 287 (1043)
|+|+...... + .+.......+|+|....... +. ..+.++||||..+.. .+....
T Consensus 178 N~L~~~~~~~-----~---------~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 178 NRMIKEFSDE-----T---------ENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp HHHHHHHTTS-----C---------SSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred HHHHhhhccc-----c---------ccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 9998553111 0 00011223566776654433 22 238899999975532 222222
Q ss_pred -hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCCC
Q psy11896 288 -LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 288 -l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~~ 350 (1043)
....+..++++++...........+.++...+.|+++|+||+|.... ..+...+.+.+.++..
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 25678899999985322111111123334567899999999999743 3556777778888753
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-17 Score=196.94 Aligned_cols=163 Identities=25% Similarity=0.260 Sum_probs=132.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
..|+.++ |..++||||...+.....+.....+|+|.+.....+.+ ++.+++|||||||.+|...+..+++.+|++|+|
T Consensus 4 ~pkV~Iv-G~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIM-GHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEE-ESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4577777 99999999998888777777888899999999888877 567899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|++++...++.+++..+...++|+++++||+|+++.+.......+... .. ....+ ....+++++||++|.|
T Consensus 83 VDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~------~~e~~-~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV------VCEDY-GGDVQAVHVSALTGEN 154 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS------CCCCS-SSSEEECCCCSSSSCS
T ss_pred EECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh------hHHhc-CCCceEEEEECCCCCC
Confidence 9999999999999999999999999999999999765433222222221 10 01111 1235789999999999
Q ss_pred cchHHHHHHhhcc
Q psy11896 161 KTTLTERILFYTG 173 (1043)
Q Consensus 161 i~~L~~~l~~~l~ 173 (1043)
+++|++.+...+.
T Consensus 155 I~eLle~I~~l~~ 167 (537)
T 3izy_P 155 MMALAEATIALAE 167 (537)
T ss_dssp SHHHHHHHHHHHT
T ss_pred chhHHHHHHHhhh
Confidence 9999999987654
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=189.31 Aligned_cols=158 Identities=34% Similarity=0.489 Sum_probs=113.5
Q ss_pred ccceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcc
Q psy11896 3 HKVKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVD 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~ 62 (1043)
.++.|+ |..++||||.. ..+++|+.+.|+++|+|+......+.|. ++.++|||||||.+
T Consensus 5 rnI~Ii-Gh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSII-AHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEE-CCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 356666 99999999872 2356788999999999999998888775 37899999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCC
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+..+..+++.+.++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg----------- 152 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG----------- 152 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhC-----------
Confidence 999999999999999999999999999999999888888999999999999988777666666665432
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...++.
T Consensus 153 --~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 --IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 112347899999999999999999887764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-17 Score=191.97 Aligned_cols=128 Identities=31% Similarity=0.486 Sum_probs=115.0
Q ss_pred ccceeeeeecccccccCCcc----------------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 60 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~ 60 (1043)
.++.|+ |..++||||...+ ++.|+.+.|+++|+|+......+.+++++++|||||||
T Consensus 14 r~IaIi-G~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 14 RTFAII-SHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 355666 9999999998433 36688889999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+|...+..+++.+|++|+|+|++.+...++..+|..+...++|+++|+||+|+...+..+.++++++.++
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999988777777788877664
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-17 Score=188.05 Aligned_cols=173 Identities=23% Similarity=0.267 Sum_probs=128.4
Q ss_pred ccceeeeeecccccccCCcc---------------------------------ccCCChhhhhhcCCccccceEEEEecC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG---------------------------------AVMDSMELERQRGITIQSAATYTLWKD 49 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~---------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~ 49 (1043)
+|+.++ |..++||+|...+ +.+|..++|+++|+|++.....+.+.+
T Consensus 25 ~~i~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 25 LRFLTC-GNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred eEEEEE-ECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 567777 9999999987422 235667789999999999999999999
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQ 128 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~ 128 (1043)
.+++|||||||.+|...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.+.+. .+.+.+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~-~~~i~~ 182 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV-FESIKA 182 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH-HHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999998888888778875 89999999998654332 222222
Q ss_pred hhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccc
Q psy11896 129 KTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHET 181 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~ 181 (1043)
.+..++...+. .....+++++||++|.|++++++.+.|+.++ +.+.++.
T Consensus 183 ~~~~~~~~~g~----~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~ 232 (434)
T 1zun_B 183 DYLKFAEGIAF----KPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET 232 (434)
T ss_dssp HHHHHHHTTTC----CCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH
T ss_pred HHHHHHHHhCC----CccCceEEEEeccCCCCcccccccCccccCchHHHHHhc
Confidence 22222222111 1233578999999999999998888888765 4444443
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-17 Score=186.45 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=91.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liD 273 (1043)
+....++|+++|+.|+|||||+++|+.... ...+..+|+|++.....+.+.+. .++|||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~--------------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liD 89 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV--------------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC---------------------------------CCCCEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC--------------------CccCCCCCeeeeeEEEEEEECCCCeEEEEE
Confidence 345578999999999999999999974321 11345678888888888888776 999999
Q ss_pred CCCCCCchHH-------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 274 TPGHVDFTVE-------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 274 tPG~~df~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
||||.+|... +..+++.+|++|+|+|+ +...++...+..+.+.++|+++|+||+|+....
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9999987532 56678889999999999 788999999999999999999999999987543
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=189.45 Aligned_cols=157 Identities=31% Similarity=0.428 Sum_probs=116.8
Q ss_pred cceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEecC-----eeEEEEeCCCCcch
Q psy11896 4 KVKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWKD-----HNINIIDTPGHVDF 63 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----~~i~liDTPG~~~~ 63 (1043)
++.|+ |..++||||.. .++++|+.+.|+++|+|+......+.|.. +.++|||||||.+|
T Consensus 8 nI~Ii-Gh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 8 NFCII-AHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEE-CC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred EEEEE-CCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 55666 99999999861 24667889999999999998888877753 68999999999999
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCC
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
...+..+++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+...+..+..+++.+.++
T Consensus 87 ~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg------------ 154 (600)
T 2ywe_A 87 SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG------------ 154 (600)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSC------------
T ss_pred HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhC------------
Confidence 99999999999999999999999999999999988889999999999999988776666666655432
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...+++
T Consensus 155 -~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 155 -LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp -CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 122357899999999999999999887763
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=189.64 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=117.8
Q ss_pred ccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+|+.++ |..++||+|.. ++|++|....|+++|+|++.....+.+.+.+
T Consensus 34 ~ki~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 34 LSFVVL-GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEE-SCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 577777 88888888763 3567899999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCC-CEEEEEecCCCCCCCHHHHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~ 123 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++ ...++.+++..+...++ |+|+|+||+|+.+.+.. ..
T Consensus 113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~-~~ 191 (483)
T 3p26_A 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ-RF 191 (483)
T ss_dssp EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-HH
T ss_pred EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-HH
Confidence 99999999999999999999999999999999987 55788888888887775 49999999999864432 22
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHH---HHhhccc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER---ILFYTGR 174 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~---l~~~l~~ 174 (1043)
+++.+.+..++...++ .....+++++||++|.|++++.+. ..||.++
T Consensus 192 ~~i~~~~~~~l~~~g~----~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~ 241 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGF----FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 241 (483)
T ss_dssp HHHHHHHHHHHHHHTC----CGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCC----CcccceEEEEeeecCCCccccCcccccccccCCC
Confidence 3333333333222221 112357899999999999987543 5666665
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=160.97 Aligned_cols=118 Identities=36% Similarity=0.446 Sum_probs=94.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|+...-.. ....++|.......+.+++..+.+|||||+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 65 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTE---------------------QEAGGITQHIGAYQVTVNDKKITFLDTPGH 65 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSC---------------------SSCCSSSTTCCCCEEEETTEEEEESCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcccc---------------------CCCCceeEeeeEEEEEeCCceEEEEECCCC
Confidence 45789999999999999999997432110 112233434444456778889999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCH
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP 336 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 336 (1043)
.+|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 99887777788999999999999998888888888888888999999999999976543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=176.98 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=88.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.....+ . ....++|.......+.+++..++++||||+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--------------~------s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--------------T------SRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE--------------C------CCCSSCCSSCEEEEEEETTEEEEEESSSSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc--------------c------CCCCCcceeeEEEEEEECCeeEEEEECcCC
Confidence 34689999999999999999998542111 0 112344444444556788899999999999
Q ss_pred C-Cc--------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 V-DF--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~-df--------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. .+ ...+..+++.+|++++|+|+.. +..++..+++.+...+.|+++|+||+|+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 7 32 2233556789999999999988 999999888888878999999999999874
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=164.60 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=88.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-ecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-WKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDtP 275 (1043)
....+|+++|+.|+|||||+++|+...... ......|+|......... +++..++|||||
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------------FASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------------CTTCCCCSCCCEEEEEESCTTSCSEEEEECC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------------eecCCCCcccceEEEEecCCCCCcEEEEcCC
Confidence 346789999999999999999997432100 012244566665555554 567899999999
Q ss_pred CCCC----------chHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVD----------FTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~d----------f~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|+.+ |...+..+++. +|++++|+|+.++.......++..+...++|+++|+||+|+..
T Consensus 88 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9744 23334444544 8889999999999888888888888889999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-17 Score=178.36 Aligned_cols=202 Identities=15% Similarity=0.069 Sum_probs=124.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+........ ....++|.........|++..++||||||+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-------------------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~ 81 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESK-------------------LGSQTLTKTCSKSQGSWGNREIVIIDTPDM 81 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-------------------TTSCCCCCSCEEEEEEETTEEEEEEECCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccC-------------------CCCCceeeeeEEEEEEeCCCEEEEEECcCC
Confidence 4578999999999999999999854432211 002226666667778899999999999999
Q ss_pred CCchH-----------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc-----CCCeEEEEe-ccCCCCCCHHHH-
Q psy11896 278 VDFTV-----------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFIN-KLDRLGADPYRV- 339 (1043)
Q Consensus 278 ~df~~-----------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviN-KiD~~~~~~~~~- 339 (1043)
.++.. .+..+++.+|++|+|+|+.. +..+...+++++.+. +.|+++|+| |+|+...+..+.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i 160 (260)
T 2xtp_A 82 FSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYM 160 (260)
T ss_dssp GGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHH
Confidence 87632 22336688999999999985 777888887777665 678888888 999986665442
Q ss_pred -------HHHHHHHhCCCceee-eecc--cc----CCCeeEEEEccccee-EeecCCCCCeeEeecCch--hHHHHHHHH
Q psy11896 340 -------INQMRQKVGHNAAFL-QIPI--GL----GSETKGIIDLIQRKA-IYFEGPLGDNLRIEEIPA--DLKKEAESK 402 (1043)
Q Consensus 340 -------~~~i~~~l~~~~~~~-~~p~--~~----~~~~~g~~dl~~~~~-~~~~~~~g~~~~~~~i~~--~~~~~~~~~ 402 (1043)
+..+.+.++....+. .+|+ .. ..-+.++.+++.... ++|+.+ ...++|. ......++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 161 HDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG-----LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH-----HHHHC-------------
T ss_pred HhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH-----HHHHHHHHHhhhhhHHHH
Confidence 233455555432111 0222 11 111223333333333 445321 2234455 445566778
Q ss_pred HHHHHHHHhcCChHHHHHHhcc
Q psy11896 403 RQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 403 r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
|..+.+.+++.+++++++|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTALA 257 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=155.04 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=87.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+++|+++|+.|+|||||+++|+...... .+...++|.......+.+++..+.+|||||+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV--------------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-------------------------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee--------------------ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 3789999999999999999997432110 12244566666666777888999999999998
Q ss_pred C-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+ +...+...++.+|++++|+|+..+.......+...+...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 61 SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp SSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 7 344566778999999999999998887777777777778999999999999863
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-16 Score=185.46 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=115.7
Q ss_pred ccceeeeeecccccccCCcc-------------------------------ccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-------------------------------AVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+|+.++ |..++||+|...+ +++|+.++|+++|+|++.....+++.+++
T Consensus 7 ~~I~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 7 LNLIVI-GHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEE-eCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 567777 9999999988322 34678889999999999999899999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++ +..++.+++..+...++| +++++||+|+.+.+. +..
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 165 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 165 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH
Confidence 99999999999999999999999999999999987 677888888888888874 899999999976321 112
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+.+.+.+..++...++. ....+++++||++|.|+.++.+.+.|+.+
T Consensus 166 ~~~~~~~i~~~~~~~~~~----~~~~~~i~iSA~~g~~v~e~~~~~~~~~g 212 (435)
T 1jny_A 166 YKEIVDQVSKFMRSYGFN----TNKVRFVPVVAPSGDNITHKSENMKWYNG 212 (435)
T ss_dssp HHHHHHHHHHHHHHTTCC----CTTCEEEECBTTTTBTTTBCCSSCTTCCS
T ss_pred HHHHHHHHHHHHHHcCCC----cCCceEEEeecccCccccccccccccccc
Confidence 222223232222222211 11246899999999999887665555544
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-16 Score=161.52 Aligned_cols=163 Identities=28% Similarity=0.298 Sum_probs=128.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+.....+++|.+.....+.+++..+.+|||||+.++...+..++..+|++|+|+
T Consensus 8 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 86 (178)
T 2lkc_A 8 PPVVTIM-GHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVV 86 (178)
T ss_dssp CCEEEEE-SCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEE
Confidence 4677777 999999999988888888888888899999888888899999999999999988877778889999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|++++...+....+..+...++|+++|+||+|+...+.++..+.+.. ... +...+ ....+++++||++|.|+
T Consensus 87 d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~------~~~~~-~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 87 AADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELME-YNL------VPEEW-GGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp ETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTT-TTC------CBTTT-TSSEEEEECCSSSSHHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHh-cCc------ChhHc-CCcccEEEEecCCCCCH
Confidence 99988777777777777777899999999999976544333322211 110 11001 01247899999999999
Q ss_pred chHHHHHHhhcc
Q psy11896 162 TTLTERILFYTG 173 (1043)
Q Consensus 162 ~~L~~~l~~~l~ 173 (1043)
+++++.+.....
T Consensus 159 ~~l~~~l~~~~~ 170 (178)
T 2lkc_A 159 DHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-16 Score=185.76 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=96.3
Q ss_pred ccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|.. +++++|+.+.|+++|+|++.....+++++.+
T Consensus 44 ~~i~ii-G~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 44 VNIVFI-GHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEE-ECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eEEEEE-ECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 456666 88888888873 2456788899999999999999899999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++. ..++.+++..+...++| +|+++||+|+...+. ++.
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence 999999999999999999999999999999999875 25788888888888998 999999999964321 112
Q ss_pred HHHHHHhhhhccccc-cccCCCCccceeeeeeeecccCCcchHHH--HHHhhccc
Q psy11896 123 INQMRQKTSRWISNE-SLSEHKPIEYIRNIGISAHIDSGKTTLTE--RILFYTGR 174 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~-~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~--~l~~~l~~ 174 (1043)
.+.+.+.+..++... ++.. ....+++++||++|.|++++++ ...|+.++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~---~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~ 254 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNS---KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP 254 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCH---HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSC
T ss_pred HHHHHHHHHHHHHHhcCCCc---cCCceEEecccccccccccccccccCccccch
Confidence 222222222222221 1110 0135789999999999998773 33455443
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-16 Score=170.23 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=123.8
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
.++.++ |.+++||+|...+.+..... ....|++|++.....+.+++.+++||||||+.+ +...+..+++.
T Consensus 8 g~V~iv-G~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIV-GKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 356666 99999999987766665553 457889999988888888899999999999986 67778889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|++++|+|++++....+..++..+... ++|+++|+||+|+..... ...+.+++ + ..+.+++
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~-~--------------~~~~~~~ 150 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHE-L--------------LPEAEPR 150 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHH-T--------------STTSEEE
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HHHHHHHH-h--------------cCcCcEE
Confidence 9999999999988888887777778776 899999999999975322 12222221 1 2334689
Q ss_pred eeeecccCCcchHHHHHHhhccc
Q psy11896 152 GISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++||++|.|+++|++.+...+++
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999987765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-16 Score=167.60 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=87.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|++|+|||||+++|+... .. ....+|+|+......+.+++..+.+|||||+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~------------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~ 60 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QR------------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYS 60 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EE------------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CC------------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccc
Confidence 689999999999999999997432 11 122457888888888899999999999999998
Q ss_pred chHH----------HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTVE----------VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e----------~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|... ....+ +.+|++|+|+|+.. ......+..++...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 61 LVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp CC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred ccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 8642 23344 78999999999987 3455566777778899999999999964
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=189.04 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=127.6
Q ss_pred CccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCe
Q psy11896 2 EHKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDH 50 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 50 (1043)
.+|+.++ |..++||+|.. ++|++|.++.|+++|+|++.....+.+.++
T Consensus 167 ~lkV~iv-G~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 167 HLSFVVL-GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCEEEEE-CCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred ceEEEEE-ECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 4677777 88888888873 245577888999999999999999999999
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHH
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 122 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~ 122 (1043)
+++|||||||.+|...+..+++.+|++|+|+|++.+ ...++.+++..+...++| +|+|+||+|+.+.... .
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~-~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ-R 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH-H
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH-H
Confidence 999999999999999999999999999999999865 456788888888877876 9999999999864432 2
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHH---HHhhccc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER---ILFYTGR 174 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~---l~~~l~~ 174 (1043)
.+.+.+.+..++...++ .....+++++||++|.|++++... +.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~----~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~ 375 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGF----FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 375 (611)
T ss_dssp HHHHHHHHHHHHHHHTC----CGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSC
T ss_pred HHHHHHHHHHHHHhhcc----cccCccEEeeecccCCCccccCccccccccccCC
Confidence 23333333333222221 112357899999999999988543 4455554
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-16 Score=185.65 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=124.1
Q ss_pred ccceeeeeecccccccCCcc-------------------------------ccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-------------------------------AVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|...+ +++|..+.|+++|+|++.....+.+.+.+
T Consensus 8 ~~i~ii-G~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 8 INVVVI-GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 466677 8888888887432 34567778899999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCch-------hHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-------QTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~-------~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~ 123 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++..+ ++.+++..+...++| +++|+||+|+.+++.++ +
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~-~ 165 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR-F 165 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH-H
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH-H
Confidence 99999999999999999999999999999999976544 777777777778887 89999999997543332 2
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+.+.+..++...++. ....+++++||++|.|++++...+.|+.
T Consensus 166 ~~i~~~~~~~l~~~g~~----~~~~~~i~vSA~~g~nv~~~~~~~~~~~ 210 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYN----PKTVPFVPISGWNGDNMIEATTNAPWYK 210 (458)
T ss_dssp HHHHHHHHHHHHHHTCC----GGGCCEEECCTTTCBTTTBCCSSCTTCC
T ss_pred HHHHHHHHHHHHHcCCC----ccCceEEEeecccCcCcccccccCchhh
Confidence 22222222222221111 1124689999999999998876666664
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=169.86 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=128.4
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEec-CeeEEEEeCCCCcc----------hHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWK-DHNINIIDTPGHVD----------FTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~----------~~~~~~~~ 70 (1043)
.++.++ |..++||+|...+.+..... ....+++|++.....+..+ +.+++||||||+.+ +...+..+
T Consensus 11 g~v~iv-G~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 11 GYVAIV-GKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 356677 99999999997777666554 5788999999999999998 99999999999964 44677889
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHH-HHHHHhcCCCEEEEEecCCCC-CC-CHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTV-NRQMKRYDVPCIAFINKLDRL-GA-DPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~-~~~l~~~~~piilvlNKiDl~-~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++++|+|++++.+..+..+ +..+...++|+++|+||+|+. .. ......+.+.+.++ .+
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~--------------~~ 155 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--------------EL 155 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT--------------TC
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc--------------CC
Confidence 999999999999998888888887 677777889999999999997 32 22333334433221 23
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEM 178 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~ 178 (1043)
.+++++||++|.|+++|++.+...+++....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~ 186 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGEPL 186 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence 5789999999999999999999888754433
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-16 Score=183.20 Aligned_cols=161 Identities=23% Similarity=0.268 Sum_probs=115.9
Q ss_pred ccceeeeeecccccccCCcccc-------CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV-------MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLD 75 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~-------~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD 75 (1043)
+++.++ |..++||+|...+.. +|..+.|+++|+|++..+..+.+++.+++|||||||.+|...+..+++.+|
T Consensus 20 ~~I~ii-G~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD 98 (482)
T 1wb1_A 20 INLGIF-GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID 98 (482)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred CEEEEE-CCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence 456667 999999999843333 566889999999999999899999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
++|+|+|++++...++.+++..+...++|+++|+||+|+.+.+ .+...+++.+.+ ... ..+...+++++|
T Consensus 99 ~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l----~~~-----~~~~~~~ii~vS 169 (482)
T 1wb1_A 99 LALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL----QST-----HNLKNSSIIPIS 169 (482)
T ss_dssp EEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH----HHS-----SSGGGCCEEECC
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHH----hhh-----cccccceEEEEE
Confidence 9999999999999999999988888999999999999997521 122233333322 111 012235789999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|+++|++.+...++
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999987664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=164.81 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=108.5
Q ss_pred EEeCCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 54 IIDTPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 54 liDTPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
+-+.|||. +...++...+..+|++++|+|++++.......+.+++ .++|.++|+||+|+.+ . ...+.+.+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~-~~~~~~~~~~~- 76 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--A-AVTQQWKEHFE- 76 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--H-HHHHHHHHHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--H-HHHHHHHHHHH-
Confidence 44689997 5778899999999999999999987776654454444 5789999999999975 2 12223322221
Q ss_pred ccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCc
Q psy11896 133 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGK 212 (1043)
Q Consensus 133 ~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GK 212 (1043)
. .. .+++++||+++.|+++|++.+...+....+..... . ...+..+++++|.+|+||
T Consensus 77 ---~--------~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~-----~------~~~~~~~v~~vG~~nvGK 133 (282)
T 1puj_A 77 ---N--------QG-IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK-----G------VKPRAIRALIIGIPNVGK 133 (282)
T ss_dssp ---T--------TT-CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHT-----T------CCCCCEEEEEEESTTSSH
T ss_pred ---h--------cC-CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhc-----C------CCCCCceEEEEecCCCch
Confidence 0 11 26788999999999999998887665422111000 0 012236799999999999
Q ss_pred ccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 213 TTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 213 TTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
|||+|+|+...... ....+|+|.......+ +..+.++||||..+
T Consensus 134 SsliN~l~~~~~~~--------------------~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 134 STLINRLAKKNIAK--------------------TGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp HHHHHHHHTSCCC--------------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred HHHHHHHhcCceee--------------------cCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 99999997432111 1224566665543322 45799999999754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-16 Score=153.09 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRV 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~ 73 (1043)
++|+.++ |..++||+|...+...+... .+..+++|.+.....+..++.++.+|||||+.+ +...+..+++.
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 1 MHKVVIV-GRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 3577788 99999999997777666543 567889999998888889999999999999987 56677788999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++.......+..++...++|+++|+||+|+.+.. +....+. .....+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------~~~~~~~---------~~~~~~~~~~ 141 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE---------LYLGPLY---------GLGFGDPIPT 141 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG---------GGCGGGG---------GGSSCSCEEC
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch---------HhHHHHH---------hCCCCCeEEE
Confidence 999999999998877777777777777889999999999986431 1111110 1222357899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 142 Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 142 SSEHARGLEELLEAIWERL 160 (161)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred ecccCCChHHHHHHHHHhC
Confidence 9999999999999988654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=177.08 Aligned_cols=164 Identities=24% Similarity=0.294 Sum_probs=125.8
Q ss_pred ccceeeeeecccccccCCcc-----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
+|+.++ |..++||+|...+ +.+|..++|+++|+|++.....+.+.+.+++|||||||.+|..
T Consensus 12 ~~I~ii-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 90 (405)
T 2c78_A 12 VNVGTI-GHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 90 (405)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred EEEEEE-cCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHH
Confidence 566777 9999999887221 1457788999999999998888888889999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
.+..+++.+|++|+|+|++++...++.+++..+...++| +++++||+|+.. +. ...+.+.+.+..++...++.
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~-~~~~~~~~~~~~~l~~~~~~---- 164 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DP-ELLDLVEMEVRDLLNQYEFP---- 164 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH-HHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cH-HHHHHHHHHHHHHHHHhccc----
Confidence 999999999999999999999999999999888888999 899999999975 22 22222222222222221111
Q ss_pred ccceeeeeeeecccCC------------------cchHHHHHHhhcc
Q psy11896 145 IEYIRNIGISAHIDSG------------------KTTLTERILFYTG 173 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~G------------------i~~L~~~l~~~l~ 173 (1043)
....+++++||++|.| +++|++.+..+++
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1124689999999987 6677777766554
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=152.82 Aligned_cols=117 Identities=14% Similarity=0.273 Sum_probs=81.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.....+|+++|++|+|||||+++|+.... .. ......|.|....... . +..+.+|||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~------------------~~~~~~~~t~~~~~~~--~-~~~~~l~Dt 76 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKN-LA------------------RTSSKPGKTQTLNFYI--I-NDELHFVDV 76 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------CCEEEEE--E-TTTEEEEEC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCC-cc------------------ccCCCCCceeeEEEEE--E-CCcEEEEEC
Confidence 344578999999999999999999974310 00 0112334444433322 2 347999999
Q ss_pred CCC----------CCchHHHHHHhHhc---CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 275 PGH----------VDFTVEVERALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~----------~df~~e~~~~l~~~---D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||+ ..|...+...++.+ |++++|+|+.++.......+++.+...+.|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 77 PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 994 33444455556655 999999999999888888888888888999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=150.23 Aligned_cols=116 Identities=18% Similarity=0.079 Sum_probs=83.2
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
..+..+|+++|++|+|||||+++|+...... ....|+......+.+++..+.+||||
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~ 75 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----------------------DMIPTVGFNMRKITKGNVTIKLWDIG 75 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCSEEEEEEEETTEEEEEEEEC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------ccCCCCceeEEEEEeCCEEEEEEECC
Confidence 3446789999999999999999997432110 00112222233466788999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~~ 334 (1043)
|+.+|...+..+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+...
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999988888889999999999999875333322 2222222 257899999999998753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=166.88 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=86.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.... . ....+|+|+......+.+.+..+.+|||||+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~---~------------------v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ---R------------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE---E------------------EEECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc---c------------------cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 5799999999999999999974321 1 123567888888888888899999999999988
Q ss_pred chH---------HHH-HH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV---------EVE-RA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~---------e~~-~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|.. .+. .. .+.+|++++|+|+.. .........++.+.++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 762 111 12 268999999999987 3445556677778899999999999964
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=174.03 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=123.1
Q ss_pred ccceeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEec-----------------------CeeEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWK-----------------------DHNINIID 56 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~-----------------------~~~i~liD 56 (1043)
+++.++ |..++||+|...+.. .|..++|+++|+|++..+..+.+. ..+++|||
T Consensus 11 ~~I~ii-G~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 11 VNIGMV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 456667 999999999966655 788899999999999877655541 16799999
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhhhhc
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKTSRW 133 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~~~~ 133 (1043)
||||.+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+. ....+++.+.+..
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~- 168 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG- 168 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999887 7888888777776665 6999999999975321 1233444433321
Q ss_pred cccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 134 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 134 ~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 169 ---------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 169 ---------TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp ---------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 1122357899999999999999999987655
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-17 Score=194.16 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=73.3
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHHHH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTV 94 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~~~ 94 (1043)
+|++|.+++|+++|+|++.....+.+++++++|||||||.+|...+..+++.+|++|+|+|++.+. ..++.++
T Consensus 227 ~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~ 306 (592)
T 3mca_A 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH 306 (592)
T ss_dssp --------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH
T ss_pred hhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999754 7889999
Q ss_pred HHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhcc-ccccccCCCCccceeeeeeeecccCCcch
Q psy11896 95 NRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWI-SNESLSEHKPIEYIRNIGISAHIDSGKTT 163 (1043)
Q Consensus 95 ~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~ 163 (1043)
+..+...++| +|+|+||+|+.+++... .+.+.+.+..++ ...++ .....+++++||++|.|+++
T Consensus 307 l~~~~~lgip~iIvviNKiDl~~~~~~~-~~~i~~el~~~l~~~~g~----~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 307 AYLLRALGISEIVVSVNKLDLMSWSEDR-FQEIKNIVSDFLIKMVGF----KTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp HHHHHHSSCCCEEEEEECGGGGTTCHHH-HHHHHHHHHHHHTTTSCC----CGGGEEEEEECSSSCSSSCS
T ss_pred HHHHHHcCCCeEEEEEeccccccccHHH-HHHHHHHHHHHHHHhhCC----CccceEEEEEecccCccccc
Confidence 8888889997 99999999997654433 233333333332 22221 11235789999999999983
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=176.32 Aligned_cols=164 Identities=23% Similarity=0.224 Sum_probs=125.8
Q ss_pred ccceeeeeecccccccCCccc----------------cCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGA----------------VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~----------------~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+|+.++ |..++||+|...+. .+|..+.|+++|+|++.....+.+.+.+++|||||||.+|...
T Consensus 4 ~~I~ii-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 4 VNVGTI-GHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred EEEEEE-eCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 577777 99999999983222 2456667889999999988888888899999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+..+++.+|++|+|+|++++...++.+++..+...++| +++++||+|+.+ +. +..+.+.+.+..++...++. .
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~-~~~~~~~~~~~~~l~~~~~~----~ 156 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DS-EMVELVELEIRELLTEFGYK----G 156 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CH-HHHHHHHHHHHHHHHHTTSC----T
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CH-HHHHHHHHHHHHHHHHcCCC----c
Confidence 99999999999999999999999999999888888999 789999999975 22 22222222222222221211 1
Q ss_pred cceeeeeeeecccCC----------cchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSG----------KTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~G----------i~~L~~~l~~~l~ 173 (1043)
...+++++||++|.| +++|++.+..+++
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 124789999999875 7788888877665
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=173.14 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=111.9
Q ss_pred ccceeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEe---------------c--------CeeEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW---------------K--------DHNINIID 56 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~---------------~--------~~~i~liD 56 (1043)
+++.++ |..++||+|...+.. .|..+.|+++|+|++..+....+ . ...++|||
T Consensus 9 ~~I~ii-G~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 9 VNIGMV-GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 567777 999999999965555 67889999999999887655443 1 16799999
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhhhhc
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKTSRW 133 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~~~~ 133 (1043)
||||.+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++++||+|+.+.+. ....+++.+.+..
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~- 166 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG- 166 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh-
Confidence 9999999999999999999999999999886 7888888777776665 7999999999976432 2233444443321
Q ss_pred cccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 134 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 134 ~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 167 ---------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 167 ---------TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp ---------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred ---------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 1122357899999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=175.23 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=88.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|.+|+|||||+|+|+.....+ .+...|+|.+.....+.|++..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~--------------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI--------------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce--------------------ecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999997432111 234678999988889999999999999999765
Q ss_pred c---------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 F---------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f---------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+ ...+..+++.+|++++|+|+..+.......+..++.+.++|+++|+||+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 2 3446778899999999999999998888888888888899999999999963
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=149.53 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=77.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|+..... . ... |+......+.+++..+.+|||||+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV--H------------------TSP----TIGSNVEEIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE--E------------------EEC----CSCSSCEEEEETTEEEEEEECCC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--c------------------CcC----CCccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999732211 0 001 1112233456688999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+....... ..+..... .+.|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp --CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9988888889999999999999986433322 22333322 5789999999999874
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=154.25 Aligned_cols=128 Identities=22% Similarity=0.126 Sum_probs=82.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeE-EEEecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT-YTLWKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDtP 275 (1043)
....+|+++|++|+|||||++.|......... .. ......+.....|.+...... .+..+...+++||||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~------~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK------GE---MVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB------CC---CEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc------cc---ccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 45678999999999999999766532111100 00 000000000111111111111 122345689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---------cCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---------YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---------~~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++|+|+|+.++...+....+..+.. .++|+++|+||+|+..
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999999997766655555443322 5789999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-15 Score=147.79 Aligned_cols=113 Identities=19% Similarity=0.047 Sum_probs=81.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...- . . ...|+......+.+++..+.+|||||+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~---------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~ 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V---------------T-------TIPTIGFNVETVTYKNLKFQVWDLGGL 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C---------------C-------CCCCSSEEEEEEEETTEEEEEEEECCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C---------------C-------cCCcCccceEEEEECCEEEEEEECCCC
Confidence 347899999999999999999963211 0 0 011222333456678899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-Hh---cCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-KR---YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~~---~~~p~ivviNKiD~~~~ 334 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+... .. .++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 99988888888999999999999876433222 222222 22 57899999999998743
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=161.63 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=88.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+++|+++|++|+|||||+++|+.... . ....+|+|+......+.+++..+++|||||+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 61 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ---H------------------VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIY 61 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE---E------------------EEECTTSSCEEEEEEEEETTEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc---c------------------cCCCCCeEEEeeEEEEEECCceEEEEeCCCcc
Confidence 57899999999999999999974321 1 12356778888888889999999999999998
Q ss_pred CchHH------HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcC-CCeEEEEeccCCC
Q psy11896 279 DFTVE------VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e------~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~ 332 (1043)
+|... ....+ ..+|++++|+|+..+ .+....+.++...+ +|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 62 SLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 87652 23333 569999999999985 45666677777778 9999999999953
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=150.79 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+....++|+++|+.|+|||||+++|+....... ++ . .|+......+.+.+..+.+||
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---------------~~---~----~t~~~~~~~~~~~~~~~~i~D 69 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---------------HI---T----ATVGYNVETFEKGRVAFTVFD 69 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CC---C----CCSSEEEEEEEETTEEEEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---------------cc---c----cccceeEEEEEeCCEEEEEEE
Confidence 3445578999999999999999999974321110 00 0 122223334568889999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHhc-----------CCCeEEEEeccCCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKRY-----------DVPCIAFINKLDRLGA 334 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~~-----------~~p~ivviNKiD~~~~ 334 (1043)
|||+.+|...+..+++.+|++|+|+|+.++...... ..+..+... ++|+++|+||+|+...
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999988888889999999999999986543332 233333332 8999999999998743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=142.86 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=79.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...- .++ . .|+......+.+++..+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-----------------~~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-----------------VTT---I----PTIGFNVETVEYKNISFTVWDVGGQDKI 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-----------------SCC---C----CCSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-----------------Ccc---c----CcCceeEEEEEECCEEEEEEEcCCChhh
Confidence 699999999999999999974211 000 0 1222233446678899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++++|+|+.+.-..... ..+..... .+.|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 98888899999999999999876332222 22222222 3789999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=148.68 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=82.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|+.|+|||||+++|+....... ....|+......+.+++..+.+|||||+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQ----------------------NILPTIGFSIEKFKSSSLSFTVFDMSGQ 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCS----------------------SCCCCSSEEEEEEECSSCEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC----------------------CcCCccceeEEEEEECCEEEEEEECCCC
Confidence 457899999999999999999974321110 0112333334456677899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-Hh-----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-KR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~~-----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..+... .. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 99988888889999999999999875322221 222222 22 4789999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=150.38 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=84.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++..+|+++|..|+|||||+++|+...... ......|.+.......+......+.+|||||
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-------------------NISPTIGASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-------------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence 446789999999999999999997432100 0112334444444444444567899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998888999999999999999876544433333 22332 378999999999975
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-15 Score=156.90 Aligned_cols=165 Identities=12% Similarity=0.040 Sum_probs=120.5
Q ss_pred ccceeeeeecccccccCCccccCCC--hhhhhhcCCccccceEEEE-ecCeeEEEEeCCCCcc----------hHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS--MELERQRGITIQSAATYTL-WKDHNINIIDTPGHVD----------FTVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~--~~~e~~~G~T~~~~~~~~~-~~~~~i~liDTPG~~~----------~~~~~~~ 69 (1043)
.|+.++ |..++||+|...+.+.+. ......+|+|++.....+. .++..+.||||||+.+ +...+..
T Consensus 30 ~~i~v~-G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 30 PEIAFA-GRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp CEEEEE-ESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CEEEEE-cCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 567777 999999999977766665 2667888999988776665 5578999999999742 3444445
Q ss_pred Hhhh---cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~---aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++. +|++++|+|++++....+..++.++...++|+++|+||+|+.... .....+.+.+.+...... ...
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~------~~~ 182 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA------GYA 182 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH------TCC
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc------ccC
Confidence 5555 888999999998888888888888888899999999999997532 122233333333211000 001
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
...+++++||++|.|+++|++.+...++.
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 33578999999999999999999887764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=148.04 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.....+|+++|+.|+|||||+++|+...... .....|+|..... ...+..+.+||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~t~~~~~---~~~~~~~~i~Dt~ 76 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF--------------------VSKTPGKTRSINF---YLVNSKYYFVDLP 76 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC--------------------CCSSCCCCCCEEE---EEETTTEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc--------------------ccCCCCCccCeEE---EEECCcEEEEECC
Confidence 3456789999999999999999998543110 1112344433322 2235678999999
Q ss_pred CC----------CCchHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GH----------VDFTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~----------~df~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|. ..|...+...++. +|++++|+|+..+.......++.++...++|+++|+||+|+..
T Consensus 77 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 77 GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 93 2344444444544 4999999999998888888888888888999999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=147.98 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=84.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+....++.......+.+++ ..+.+|||
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 72 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT---------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT 72 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC---------------------CCCCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999999732111 11123344444445555665 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999998899999999999999999975443333323 22222 3789999999999863
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=172.68 Aligned_cols=128 Identities=30% Similarity=0.487 Sum_probs=100.1
Q ss_pred ccceeeeeecccccccCCc----------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNV----------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 60 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~----------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~ 60 (1043)
+++.++ |..++||||... .+++|+.+.|+++|+|+......+.++++.++|||||||
T Consensus 14 ~~I~Ii-G~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 14 RTFAII-SHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 466777 999999999721 345677888999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+|...+..+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...+..+.++++++.++
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988888999999999999988777667777777653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-15 Score=159.90 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=86.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.... . ....+|+|+......+.+++..+.+|||||+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~---~------------------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~ 62 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ---Y------------------VANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE---E------------------EEECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC---c------------------ccCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 347899999999999999999973211 0 1224588888888888888999999999999
Q ss_pred CCchH-----HH-HHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTV-----EV-ERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~-----e~-~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.. .+ ...+ ..+|++++|+|+... ......+.++...++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 88753 12 2333 479999999999873 334456677777899999999999963
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-14 Score=143.42 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=81.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|.... ... .....|.+ ...+.+++..+.+|||||+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~------------------~~~t~g~~----~~~~~~~~~~l~i~Dt~G~ 70 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED--ISH------------------ITPTQGFN----IKSVQSQGFKLNVWDIGGQ 70 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC--CEE------------------EEEETTEE----EEEEEETTEEEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC--CCc------------------ccCcCCeE----EEEEEECCEEEEEEECCCC
Confidence 35789999999999999999997431 110 01122222 2345667899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+... . ..++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 99998888999999999999999875433322 222222 1 257899999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=145.83 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=80.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|+.|+|||||+++|+....... .....|.+.......+......+.+|||||+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT-------------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc-------------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 457899999999999999999973321100 0111222222222222223468999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.+|.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999988889999999999999998765433322 2333333 3778999999999863
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=156.66 Aligned_cols=155 Identities=17% Similarity=0.078 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||++++ |+.++||||...+++.+.+..+..|.+..+.....+..++ +++.||||+|+++|...+..+++.+|++++
T Consensus 13 ~~Kivlv-Gd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 13 KFKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred cEEEEEE-CcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 4899999 9999999999999999999998888877777666666665 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHH---HhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l---~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+..... .+..+ ...++|++||+||+|+.+.. ..+..+.+.+.+ . .+.+.+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-------------~---~~~~e~ 155 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-------------N---VMFIET 155 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---CEEEEE
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh-------------C---CeeEEE
Confidence 99998643333222 22222 23468999999999986421 111122232222 1 245779
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.||+++|+.++..+.
T Consensus 156 SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC-
T ss_pred eCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=144.47 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=80.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC---eeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDt 274 (1043)
+..+|+++|++|+|||||+++|+...-. .+..+.++.+.....+.+.+ ..+.+|||
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt 63 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG---------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT---------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC---------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence 3468999999999999999999743210 11122222233334455554 78999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh-----cCCC-eEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVP-CIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~-----~~~p-~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++++|+|+.+....+....| ..+.. .+.| +++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 99999988888999999999999999875443333333 22222 2667 78999999975
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=147.90 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=80.4
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNIN 270 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~ 270 (1043)
....+...+|+++|.+|+|||||+++|+...-. .+....++.......+.+++ ..+.
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~ 81 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFS---------------------ERQGSTIGVDFTMKTLEIQGKRVKLQ 81 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CEEEEEEEETTEEEEEE
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCC---------------------CCCCCCcceEEEEEEEEECCEEEEEE
Confidence 344456789999999999999999999732110 00111122222233445555 5899
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+|||||+.+|......+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 999999999999999999999999999999875433332222 23332 568999999999985
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=147.65 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=82.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+.+...+|+++|..|+|||||+++|+..... .+....++.......+.+++ ..+.+|
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC---------------------EACKSTVGVDFKIKTVELRGKKIRLQIW 80 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC-----------------------------CCTTEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC---------------------cCCCCccceeEEEEEEEECCeEEEEEEE
Confidence 3445678999999999999999999632110 01122223333333444554 579999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---hcCCCeEEEEeccCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 332 (1043)
||||+.+|.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999999865554443332 222 2478999999999975
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=166.56 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=121.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
++.++ |...+||+|...+.. ++|+|++.....+++++++++|||||||.+|...+..+++.+|++|+|+|
T Consensus 23 ~i~ii-G~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAII-GTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEE-ESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEE-CCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 34555 999999999865555 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCCE-EEEEe-cCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee--eeecc-
Q psy11896 84 VGGVQSQTLTVNRQMKRYDVPC-IAFIN-KLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG--ISAHI- 157 (1043)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~pi-ilvlN-KiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~--iSa~~- 157 (1043)
+.+...++.+++..+...++|. ++++| |+|+ +.+. +...+++++.+ .. ......++++ +||++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l----~~------~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT----SG------TVLQDWECISLNTNKSAK 161 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT----TT------STTTTCEEEECCCCTTSS
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH----Hh------cCCCceEEEecccccccC
Confidence 8899999999999888899998 99999 9999 4221 12223343332 11 1123357899 99999
Q ss_pred --cCCcchHHHHHHhhccc
Q psy11896 158 --DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 158 --g~Gi~~L~~~l~~~l~~ 174 (1043)
|.|+++|++.+..+++.
T Consensus 162 ~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhccc
Confidence 99999999999887764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-14 Score=145.58 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=76.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+... ... + .+ |+......+.+++..+.+|||||+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~--~~~---------------~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE--IVT---------------T---IP----TIGFNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC--CEE---------------E---EE----ETTEEEEEEEETTEEEEEEECC---
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC--ccc---------------c---CC----cCceeEEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321 100 0 01 2222334466788999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+....... ..+..... .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp --CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 9988888899999999999999876433322 22222222 3789999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=147.97 Aligned_cols=116 Identities=19% Similarity=0.092 Sum_probs=84.6
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|++|+|||||+++|+..... .+...+++.......+.+++ ..+.+||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS---------------------GSYITTIGVDFKIRTVEINGEKVKLQIWD 64 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC------------------------CCTTTBSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CccCCCceeEEEEEEEEECCEEEEEEEEc
Confidence 456789999999999999999999632110 11233445555555566666 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.++........| ..... .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 999999888888889999999999999986444443333 22222 358999999999975
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=146.30 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=81.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|+.|+|||||+++|+...- .. .....|. ....+.+++..+.+|||||
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~------------------~~~t~~~----~~~~~~~~~~~~~i~Dt~G 74 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH------------------TSPTIGS----NVEEIVINNTRFLMWDIGG 74 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE------------------EECCSSS----SCEEEEETTEEEEEEEESS
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc------------------cCCcCce----eeEEEEECCEEEEEEECCC
Confidence 3457899999999999999999974321 11 0011122 2234566889999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 999888888889999999999999976433322 2233332 26789999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-15 Score=152.14 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=111.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 16 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 94 (195)
T 1x3s_A 16 LKILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 94 (195)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 678888 9999999999888877777766666666655555555544 5799999999999988899999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~S 158 (195)
T 1x3s_A 95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH----------------SMLFIEAS 158 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT----------------TCEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc----------------CCEEEEec
Confidence 9998643322222 2233332 3679999999999954321 11111221111 13568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 159 a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=144.46 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+..... .+...++|+......+.+++..+.+|||||+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY---------------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS---------------------CC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee---------------------ccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 67999999999999999999743110 112345566656666778889999999999988
Q ss_pred chH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|.. -...+++ .+|++++|+|+... ......+..+.+.++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 752 1233443 78999999999862 223334455556789999999999963
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=148.50 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
....+..+|+++|++|+|||||+++|+...-.. ......|.+.......+......+.|||
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D 83 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-------------------NISATLGVDFQMKTLIVDGERTVLQLWD 83 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------CEEEEEEETTEEEEEEEEE
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-------------------cCCCCccceeEEEEEEECCEEEEEEEEE
Confidence 334556899999999999999999997432100 0111223333333333333346799999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+..+++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|+.
T Consensus 84 t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999999999999876554443333 2222 2478999999999974
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-15 Score=168.44 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=114.2
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch-------HHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF-------TVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~-------~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+.+.... ..+..+|+|++.....+++.+. +++||||||+.++ ...+..+++
T Consensus 34 ~~kI~Iv-G~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 34 RRYIVVA-GRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CEEEEEE-CSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 3577777 9999999999877777665 5678999999999999998876 8999999999864 344678899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|+ +...++...+.++...++|+++|+||+|+......+..+++.+ .+. .++++
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~-------------~~g---~~v~~ 174 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES-------------RYE---AKVLL 174 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC-------------CTT---CCCCC
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH-------------HcC---CCEEE
Confidence 99999999998 5778888888888888999999999999986554322222111 111 36788
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+...+..
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHHHhhhh
Confidence 9999999999999999987753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=142.91 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=83.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.++..+|+++|+.|+|||||+++|+....... .....+.+.......+......+.+||||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 72 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-------------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------------CTTSCCCCEEEEEEEETTEEEEEEEEECT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------CCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 34578999999999999999999974321100 01122333333333333334689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999999999999976544433333 2222 2578999999999975
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=145.53 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|+...... .....++|.......+.+++..+.+|||||+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI--------------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC--------------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce--------------------eeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999997432111 111345565555566777888899999999876
Q ss_pred chHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 280 FTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+... ...+++.+|++++|+|+.+.........+..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 5321 2245789999999999987765554444444433 368999999999964
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=142.85 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=81.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-.. ..+...|.+.......+...+..+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-------------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-------------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 34689999999999999999997421100 01122333443333333344678999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 99998888999999999999999876443333222 33332 367899999999975
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-15 Score=182.44 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=114.0
Q ss_pred ccceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+|+.++ |..++||+|...+ +.+|..+.|+++|+|++.....+...+.+++|||||||.+|...
T Consensus 297 lnIvII-GhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~ 375 (1289)
T 3avx_A 297 VNVGTI-GHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKN 375 (1289)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHH
T ss_pred eEEEEE-cCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHH
Confidence 466777 9999999987221 24577788999999999988888888899999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+..+++.+|++|+|+|++++...++.+++..+...++| +|+++||+|+.+ +. +..+.+.+.+..++...++. .
T Consensus 376 mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~-e~le~i~eEi~elLk~~G~~----~ 449 (1289)
T 3avx_A 376 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DE-ELLELVEMEVRELLSQYDFP----G 449 (1289)
T ss_dssp HHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CH-HHHHHHHHHHHHHHHHTTSC----T
T ss_pred HHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-ch-hhHHHHHHHHHHHHHhcccc----c
Confidence 99999999999999999999999999988888888999 789999999975 22 22222222222222222211 1
Q ss_pred cceeeeeeeeccc--------CCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHID--------SGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g--------~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||++| .|+++|++.+..+++
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1347899999999 468888888877655
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=148.42 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=83.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+...+|+++|++|+|||||+++|+....... .....|++..........+...+.+||||
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 79 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-------------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------------CCCCCCCEEEEEEEEETTEEEEEEEEECC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------cCCceeEEEEEEEEEECCeEEEEEEEeCC
Confidence 44578999999999999999999974321100 01122444443333333445689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 80 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp SCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 9999988888889999999999999875433333222 33333 378999999999975
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=143.23 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=81.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...... ......|.+.......+......+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-------------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-------------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-------------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCc
Confidence 34789999999999999999997432100 01122344443333333333478999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 99988888899999999999999976544443333 33332 467899999999985
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-15 Score=162.97 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH----------HHHHHh-
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV----------EVERAL- 71 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~----------~~~~~~- 71 (1043)
.|+.++ |..++||+|...+.+.........||+|++.....+.+++..+.||||||+.++.. .+..++
T Consensus 2 ~kI~lv-G~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLI-GNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 467777 99999999998888877777888899999999999999999999999999987653 344555
Q ss_pred -hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 -RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 -~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.+|++|+|+|++. ......+..++.+.++|+++|+||+|+.... .....+.+.+.++ .+
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~ 142 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------------CS 142 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC----------------SC
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC----------------CC
Confidence 78999999999985 3455566777888899999999999985321 1111233433321 36
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|+++|++.+...
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=147.25 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=82.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
+...+|+++|++|+|||||+++|+...-... .....|++.......+......+.+|||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 66 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA-------------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC-------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------cCCccceeEEEEEEEECCeEEEEEEEECCC
Confidence 3468899999999999999999974321100 001223333333333333356899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
+.+|...+..+++.+|++|+|+|+.++........| ..+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp SGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred chhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999888899999999999999875443333333 33333 4789999999999863
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=148.25 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=108.8
Q ss_pred CccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCC----------CcchHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG----------~~~~~~~~~~ 69 (1043)
.+|+.++ |..++||+|...+...+.+ .....+|+|++.....+ +.++.+||||| +..+...+..
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 23 LPEIALA-GRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCEEEEE-EBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4677777 9999999999777666543 34567788887665433 44799999999 4456666667
Q ss_pred Hhhhc---CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~a---D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++.+ |++++|+|++++....+..++.++...++|+++|+||+|+.... .....+.+.+.+. ..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------~~ 166 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN------------ID 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT------------CC
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHc------------cc
Confidence 77776 99999999998888888777888888899999999999997532 2223344443332 01
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
...+++++||++|.|++++++.+...+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 224678999999999999999987654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-15 Score=171.70 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCc----------chHHH-HHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHV----------DFTVE-VERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----------~~~~~-~~~~ 70 (1043)
+|+.++ |..++||+|...+.+.+... .+..+|+|++.....+.+++..+.||||||+. .|... ...+
T Consensus 176 ~ki~lv-G~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 176 IQFCLI-GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred cEEEEE-cCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 577788 99999999988777666553 67789999999999999999999999999983 33333 3468
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+..... ++..+.+.+.+. ...+
T Consensus 255 ~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~------------~~~~ 322 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ------------FLDY 322 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG------------GGTT
T ss_pred HHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc------------cCCC
Confidence 8999999999999999999998888888888999999999999975432 223333333321 1233
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|++++++.+.....
T Consensus 323 ~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 323 APILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHH
Confidence 57899999999999999998876543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-15 Score=147.88 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=106.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--hc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--VL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~a 74 (1043)
+|+.++ |..++||+|.........+.....||+|++.....+.+++..+.+|||||+.++. .....+++ .+
T Consensus 4 ~~v~lv-G~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 4 YEIALI-GNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 677888 9999999999877776666667789999999888888889999999999998763 23344554 79
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++.. ......+..+...++|+++|+||+|+.... .....+.+.+.++ .+++++
T Consensus 83 ~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (165)
T 2wji_A 83 DLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------------VKVVPL 144 (165)
T ss_dssp SEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEEC
T ss_pred CEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------CCEEEE
Confidence 999999998752 222334445556789999999999984211 0001122322221 256889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 145 SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp BGGGTBSHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 9999999999999987643
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=146.35 Aligned_cols=116 Identities=19% Similarity=0.108 Sum_probs=61.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.+|||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN---------------------STFISTIGIDFKIRTIELDGKRIKLQIWDT 64 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---------------------CCCCCcccceeEEEEEEECCEEEEEEEEcC
Confidence 45689999999999999999999632100 11122233333334455555 78999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99999888777888999999999999975433332222 33333 3789999999999863
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-15 Score=149.61 Aligned_cols=154 Identities=15% Similarity=0.024 Sum_probs=87.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..|+++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 9 FKLLLI-GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEE-CCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 678888 9999999999988888887777888888777777777776 6899999999999988888899999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.+.+ . .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~~S 151 (183)
T 2fu5_C 88 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-------------G---IKFMETS 151 (183)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-------------T---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-------------C---CeEEEEe
Confidence 999864332222 22223332 368999999999996531 111122222211 1 3578899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 152 a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIK 170 (183)
T ss_dssp C---CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=143.78 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=82.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
++..+|+++|+.|+|||||+++|+...... .....++.......+.+++ ..+.+|||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 66 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD---------------------DSNHTIGVEFGSKIINVGGKYVKLQIWDT 66 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT---------------------TCCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 456899999999999999999997432110 1122233333334445555 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|...+..+++.+|++++|+|+.+....+....| ......++|+++|+||+|+.
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999888899999999999999975544433333 22223578999999999975
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=140.70 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=81.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.....+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.+||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 62 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD---------------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC---------------------C----CCSEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC---------------------CCCCCceeeeEEEEEEEECCEEEEEEEEe
Confidence 345678999999999999999999733210 01112222333333444555 5899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---h----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---R----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~----~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+....+....| .... . .++|+++|+||+|+.
T Consensus 63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999998888889999999999999976544333322 2221 1 578999999999986
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=158.07 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=81.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+..... .....|+|+......+.+ +..+.+|||||+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~---------------------v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR---------------------VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC---------------------CCSSSCCCCSCEEEECTT-CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCCcEEEEEEEEec-CCeEEEEECCCcC
Confidence 468999999999999999999743211 112347777766666666 7899999999998
Q ss_pred CchH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.. -...+++ .+|++++|+|+... ......+.++.+.++|+++|+||+|+.
T Consensus 61 ~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 61 SMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred ccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 8852 2334444 59999999999862 233444566667899999999999963
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=147.71 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|.... .. ....|+......+.+++..+.+|||||+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~--~~----------------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR--LA----------------------TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC--CC----------------------CCCCCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC----------------------ccccCCCCCeEEEEECCEEEEEEECCCCHH
Confidence 579999999999999999997321 10 001122233455677889999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++++|+|+.++....... .+.... ..+.|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 8877777889999999999999864333222 222222 35789999999999975
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=144.21 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=74.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+....... .....++.......+..++ ..+.+|||
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt 67 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG--------------------TFISTVGIDFRNKVLDVDGVKVKLQMWDT 67 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC--------------------CCCCCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC--------------------CcCCceeeEEEEEEEEECCEEEEEEEEeC
Confidence 3457899999999999999999974321110 0111222222222334444 58999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|...+..+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999988888889999999999999975443332222 22222 5789999999999864
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=141.86 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=79.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|+.|+|||||+++|+....... .....|.+.......+......+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN-------------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT-------------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEECCCChh
Confidence 5799999999999999999974321100 011223333333333322345899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|+.+.........| .... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 998889999999999999999976443333322 2222 24789999999999753
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=171.04 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCC----------CcchHHH-HHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVE-VERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG----------~~~~~~~-~~~~ 70 (1043)
+|+.++ |..++||+|...+..... ...+..+|+|++.....+.+++.+++|||||| ++++... ...+
T Consensus 196 ~ki~iv-G~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 196 IQFCLI-GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred ceeEEe-cCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 567777 999999999877666543 55678899999999999999999999999999 4555544 3458
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...+. ++..+.+.+.+. ...+
T Consensus 275 ~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~------------~~~~ 342 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ------------FLDY 342 (456)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG------------GGTT
T ss_pred HhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc------------cCCC
Confidence 8999999999999999999999999988889999999999999975432 222333333221 1234
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|+++|++.+.....
T Consensus 343 ~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 343 APILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 57899999999999999999986553
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=142.91 Aligned_cols=155 Identities=12% Similarity=0.002 Sum_probs=109.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++||+|...+...+.+.. ..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+|
T Consensus 1 ~ki~~~-G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMV-GLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 577888 999999999976665555432 333 5556667777888999999999999999999999999999999999
Q ss_pred CCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++..+.... ..+..+.. .++|+++|+||+|+.+.... +++.+.++.. .. . ....+++++||++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~-~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLH-----SL--R-HRNWYIQATCATS 145 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--S-SCCEEEEECBTTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcc-----cc--c-CccEEEEEcccCC
Confidence 9865332222 22222222 37899999999999754321 2222222100 00 0 1124678999999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|.|++++++.+...+
T Consensus 146 ~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQL 160 (164)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=148.07 Aligned_cols=155 Identities=11% Similarity=-0.004 Sum_probs=114.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++|
T Consensus 6 ~~ki~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 6 QLKIVVL-GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 3678888 9999999999888887777777788887777777788776 68999999999999888999999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHHHh-----cCCC-EEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQMKR-----YDVP-CIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l~~-----~~~p-iilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|+|+++..+..... .+..+.. .+.| +++|+||+|+.... ..+....+.+.. ..+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~ 148 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN----------------GFS 148 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc----------------CCc
Confidence 999998643322222 2222322 2567 78999999986421 111122222211 135
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|++++++.+...+.
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-15 Score=153.55 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=106.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcC---------CccccceE-----EEEecCeeEEEEeCCCCcchHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRG---------ITIQSAAT-----YTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G---------~T~~~~~~-----~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
.+|+.++ |..++||+|.. +++.+.+.....+. .|+...+. .+.....++.||||||+.++...+
T Consensus 14 ~~ki~vv-G~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 14 NFKIVYY-GPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEE-CSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred ccEEEEE-CCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 3688888 99999999997 77776666554331 12221111 111234579999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHH----HHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccccc
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~----~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~ 138 (1043)
..+++.+|++|+|+|++++....+...+ .++.. .++|+++|+||+|+.+.... +++.+.+.
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~------- 161 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV---EMVRAVVD------- 161 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCH---HHHHHHHC-------
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCH---HHHHHHHH-------
Confidence 9999999999999999865444443333 33333 47899999999999764322 22222211
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.....+++++||++|.|++++++.+...+-
T Consensus 162 -----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 -----PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 112226788999999999999999876543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-14 Score=141.51 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=79.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+...... .....++.......+.+++ ..+.+|||||
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN---------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS---------------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 4689999999999999999997322110 1122233333334444554 5899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+.+|...+..+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 999998888999999999999999875333322222 2222 2478999999999975
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-14 Score=143.40 Aligned_cols=115 Identities=14% Similarity=0.028 Sum_probs=79.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEec----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWK---------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~---------- 265 (1043)
+...+|+++|++|+|||||+++|+....... ....+..... ...+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 67 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK---------------------FITTVGIDFREKRVVYRANGPDGAVGRG 67 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS---------------------CCCCCSEEEEEEEEEECTTSCCCSSCCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC---------------------cccccceeeeeEEEEEecCCcccccccC
Confidence 4567899999999999999999974321000 0001111111 1122222
Q ss_pred -CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 266 -DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 -~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
...+.+|||||+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 35899999999999999999999999999999999876544443332 22222 578999999999975
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=146.31 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|.... .. . . ..|+......+.+++..+.+|||||+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~--~~---------------~---~----~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDR--LG---------------Q---H----VPTLHPTSEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCEEEEETTEEEEEEEECC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC---------------c---c----CCCCCceeEEEEECCEEEEEEECCCcHh
Confidence 579999999999999999996321 10 0 0 0122223345677889999999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|...+..+++.+|++++|+|+.+........ .+.... ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 8877777889999999999998764333222 222222 25789999999999975
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=145.88 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=81.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+... ... + ..|+......+.+++..+.+|||||+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~---------------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDT---------------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQ 72 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSS---------------C-------CCCSSEEEEEEEETTEEEEEEEECCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCc---------------c-------cccCccceEEEEECCEEEEEEECCCC
Confidence 34789999999999999999997432 100 0 01222223445668899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+..... .+.|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 88887777888999999999999876433322 22333322 4789999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=144.04 Aligned_cols=64 Identities=22% Similarity=0.171 Sum_probs=52.1
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH-HhcCCCeEEEEeccC
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM-KRYDVPCIAFINKLD 330 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~-~~~~~p~ivviNKiD 330 (1043)
..+.||||||+.+|...+..+++.+|++++|+|+.++...+....| ..+ ...+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999998899999999999999999987544443333 222 335689999999999
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=142.03 Aligned_cols=113 Identities=19% Similarity=0.079 Sum_probs=77.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.. .....++.......+.+++ ..+.+|||||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 61 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC----------------------------CCEEEEEEESSSCEEEEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 4789999999999999999997432100 0112222222333344444 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|...+...++.+|++++|+|+.+.........| ..+.. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 999888888889999999999999875443333222 22322 378999999999984
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=168.27 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=69.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+..... ......|+|.+.....+.++++.++||||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a--------------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA--------------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--------------------------------------CEEEEETTEEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--------------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 46999999999999999999743211 1233567888887788889999999999999988
Q ss_pred chHHHHH--------HhHhcCeEEEEEeCCCCcch----HHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVER--------ALRVLDGAILVLCAVGGVQS----QTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~--------~l~~~D~~ilVvda~~g~~~----~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
+...+.. +++.+|++++|+|+.++... ....++..+. ++|+++|+||+|+...
T Consensus 294 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 294 AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp --------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 7655432 45889999999999998776 4444444433 7899999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=146.67 Aligned_cols=118 Identities=21% Similarity=0.157 Sum_probs=85.2
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+...+|+++|+.|+|||||+++|+...-... .....|++...........+..+.|||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 80 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-------------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-------------------EEEEETTTEEEEEEEETTTTEEEEEECHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-------------------cCCCeeeEEEEEEEEECCEEEEEEEEeCC
Confidence 44568999999999999999999974321110 01122444444444455567889999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999875433332223 33333 478999999999975
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=147.59 Aligned_cols=157 Identities=13% Similarity=0.022 Sum_probs=110.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++||+|...+...+.+..+..| |+......+...+..+.||||||+.++...+..+++.+|++|+|+|
T Consensus 23 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 23 MELTLV-GLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 677888 9999999999777776666544444 4444455677888999999999999999899999999999999999
Q ss_pred CCCCCchhHH-HHHH-HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQTL-TVNR-QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~~-~~~~-~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++....... ..+. .+. ..++|+++|+||+|+...... +++.+.+... .. .....+++.+||++
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~-----~~---~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLS-----AI---QDREICCYSISCKE 168 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC---CSSCEEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChh-----hh---ccCCeeEEEEECCC
Confidence 9864333222 2222 222 257899999999999764221 2222222100 00 01224678999999
Q ss_pred cCCcchHHHHHHhhcc
Q psy11896 158 DSGKTTLTERILFYTG 173 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l~ 173 (1043)
|.|++++++.+...+.
T Consensus 169 g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSK 184 (188)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=148.96 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=111.4
Q ss_pred CccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.+|+.++ |..++||+|...+...+.+.. +..+ |+......+...+..+.||||||+.++...+..+++.+|++|+|
T Consensus 17 ~~ki~v~-G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 17 KLQVVMC-GLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 3677777 999999999988888777765 4344 44455566778889999999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHhc-----------CCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKRY-----------DVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~~-----------~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|+++..+.... ..+..+... ++|+++|+||+|+..... .++.+.+.... +.. ...
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~---~~~ 162 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT--------LMG---DHP 162 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH--------HHT---TSC
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh--------hcc---CCe
Confidence 999975443332 222333222 789999999999976432 22222221100 000 122
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++.+||++|.|++++++.+...+.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 46789999999999999999987654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=148.84 Aligned_cols=154 Identities=16% Similarity=0.060 Sum_probs=108.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 27 ~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 27 LQVIII-GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 577777 9999999999888888888777788887777777777766 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+......| ..+.. .++|+++|+||+|+..... .+..+.+.+. ....+++.+|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~---------------~~~~~~~~~S 170 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ---------------ITGMRFCEAS 170 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT---------------STTCEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh---------------cCCCeEEEEe
Confidence 999865443332222 22322 3789999999999864211 1111222211 1124678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 171 A~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=141.77 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...... ...+++.......+.+++ ..+.+|||||
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD----------------------EYDPTIEDSYRKQVVIDGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC----------------------CCCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC----------------------CCCCCchheEEEEEEECCcEEEEEEEECCC
Confidence 4689999999999999999997432100 011111122222333444 4578899999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 999998889999999999999999975433332222 222 23478999999999986
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=148.08 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=79.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+... ... + .. |+......+.+++..+.+|||||+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------~---~~----t~~~~~~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGD--VVT---------------T---VP----TVGVNLETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSC--CEE---------------E---CS----STTCCEEEEEETTEEEEEEEECCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC---------------c---CC----CCceEEEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321 100 0 01 1112233466778999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~~ 334 (1043)
+|......+++.+|++++|+|+.+.-..... ..+..... .+.|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 8887777788999999999999876433322 22222222 47899999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=145.43 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=76.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.... .. ...|+......+.+++..+.+|||||+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~----------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 72 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VT----------------------TKPTIGFNVETLSYKNLKLNVWDLGGQ 72 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EE----------------------ECSSTTCCEEEEEETTEEEEEEEEC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--Cc----------------------cCCcCccceEEEEECCEEEEEEECCCC
Confidence 347899999999999999999963211 00 001111223345667899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
.+|...+..+++.+|++++|+|+.+....+.. ..+.... ..+.|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 99888888888999999999999876433322 2233332 35789999999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=146.99 Aligned_cols=158 Identities=15% Similarity=0.023 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 16 ~~~i~v~-G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 16 EHKVIIV-GLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 91 (187)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 4677888 99999999998777766554 3333 555556677788999999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+.... ..+..+.. .++|+++|+||+|+.+.... +++.+.+... .+ . ....+++.+||+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~----~~---~-~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLT----SI---K-DHQWHIQACCAL 160 (187)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGG----GC---C-SSCEEEEECBTT
T ss_pred eCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCH---HHHHHHhChh----hh---c-CCCcEEEEccCC
Confidence 99876433322 22222322 57899999999999753222 2222222100 00 0 112367899999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+...+..
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999876653
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-15 Score=177.97 Aligned_cols=158 Identities=27% Similarity=0.290 Sum_probs=123.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.++.++ |..++||||...+...........+|+|.+.....+.+++.+++|||||||.+|...+..+++.+|++|+|+|
T Consensus 5 ~~V~Iv-Ghvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVd 83 (501)
T 1zo1_I 5 PVVTIM-GHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVA 83 (501)
T ss_dssp CCEEEE-ESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEee
Confidence 456666 9999999998655544444455668999999888888888999999999999999998889999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccc-cCCCCccceeeeeeeecccCCc
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESL-SEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
++++...++.+.+..+...++|+++++||+|++..+.++..+. + ...++ ...+ ....+++++||++|.|+
T Consensus 84 a~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~----l----~~~~~~~~~~-~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 84 ADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE----L----SQYGILPEEW-GGESQFVHVSAKAGTGI 154 (501)
T ss_dssp TTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCC----C----CCCCCCTTCC-SSSCEEEECCTTTCTTC
T ss_pred cccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHH----H----HHhhhhHHHh-CCCccEEEEeeeeccCc
Confidence 9999999999999888889999999999999976443211111 1 11011 1111 12357899999999999
Q ss_pred chHHHHHHh
Q psy11896 162 TTLTERILF 170 (1043)
Q Consensus 162 ~~L~~~l~~ 170 (1043)
++|++.+..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999998864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=140.70 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=78.7
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|+.|+|||||+++|+...... + ...++.......+.+++ ..+.+||
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~------~~~t~~~~~~~~~~~~~~~~~~~~~D 63 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVS----------------D------YDPTIEDSYTKICSVDGIPARLDILD 63 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCS----------------S------CCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCcc----------------c------cCCCcCceEEEEEEECCEEEEEEEEE
Confidence 3456899999999999999999998431100 0 01111111112344444 5788999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+........ +++.....++|+++|+||+|+.
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999888888899999999999998743322221 1222234578999999999975
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=144.81 Aligned_cols=155 Identities=15% Similarity=0.028 Sum_probs=112.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 13 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (181)
T 2efe_B 13 AKLVLL-GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 91 (181)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEE
Confidence 677777 9999999999888887877777777766666555666654 5799999999999999999999999999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++...... ...+..+.. .++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 155 (181)
T 2efe_B 92 FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN----------------GLFFMETS 155 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----------------TCEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc----------------CCEEEEEE
Confidence 99986443222 222333333 2678999999999964321 11112221111 13578999
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 156 a~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=140.14 Aligned_cols=115 Identities=19% Similarity=0.132 Sum_probs=70.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....|.+.......+......+.+|||||+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD--------------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------------------------CCCSSSSEEEEEEEETTEEEEEEEECCC---
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc--------------------ccCccccceeEEEEEECCEEEEEEEEecCCCC
Confidence 4689999999999999999997432110 01123444433332222223578999999998
Q ss_pred C--chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 D--FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+ +.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp ----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred ccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 8 4444555668899999999998744333222 2233333 3789999999999863
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=146.23 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=110.3
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcchH--------HHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT--------VEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~--------~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|..........+ ....+|+|++.....+.+++..+.+|||||+.++. .....+++
T Consensus 4 ~~ki~iv-G~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIA-GRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3678888 99999999987666554432 45678999999888899999999999999997521 12335689
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
.+|++++|+|+++..+......+..+.. .++|+++|+||+|+..... .+. .....+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~---------~~~~~~ 141 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMS---------EVNGHA 141 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEE---------EETTEE
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhh---------hccCCc
Confidence 9999999999987665555444444433 2689999999999853210 000 012246
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|++++++.+...+.
T Consensus 142 ~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 142 LIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHC-
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999987654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=144.47 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=82.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..++..+|+++|++|+|||||+++|+....... .....|.+.......+...+..+.+|||
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 81 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-------------------SRTTIGVEFSTRTVMLGTAAVKAQIWDT 81 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-------------------CCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEeC
Confidence 345678999999999999999999974321110 0011233333333333334578999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 82 ~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp SCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 99999988888999999999999999875443332222 33322 378999999999975
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=148.99 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=117.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+++|.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 17 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 17 FKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 677888 9999999999888888888888889999888888888877 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+..... ......+...+ . .+++++|
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~S 159 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-------------G---IPFLETS 159 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CCEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc-------------C---CcEEEEe
Confidence 999864332222 22222322 3789999999999865321 11222222221 1 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 160 a~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-14 Score=145.35 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=82.1
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
..+...+|+++|.+|+|||||+++|+...-. .+....++.+.....+.+++ ..+.+|
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFP---------------------PGQGATIGVDFMIKTVEINGEKVKLQIW 80 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCC---------------------TTCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCC---------------------CCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 3456789999999999999999999742110 01112222333333445555 579999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
||||+.+|......+++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999988888889999999999999875443322222 2222 2468999999999975
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=147.03 Aligned_cols=158 Identities=12% Similarity=-0.006 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.+|+.++ |..++||+|...+...+. +..+ ...|+......+.+++.++.||||||+.++...+..+++.+|++|+|
T Consensus 21 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 21 EVHVLCL-GLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4678888 999999999876666554 2333 34566666777888889999999999999988888999999999999
Q ss_pred EeCCCCCchhH--HHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT--LTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~--~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+... ..+...+.. .++|+++|+||+|+.+.... +++.+.+. +.. ......+++.+
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~ 166 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS---VKVSQLLC-------LEN-IKDKPWHICAS 166 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH---HHHHHHHT-------GGG-CCSSCEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH---HHHHHHhC-------hhh-ccCCceEEEEc
Confidence 99986432222 222222332 47899999999999754221 22222221 000 00112467899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 167 Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 167 DAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTTTTBTHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=143.88 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=70.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEc
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIID 273 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liD 273 (1043)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.++ ...+.+||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ---------------------QYKATIGADFLTKEVTVDGDKVATMQVWD 64 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT---------------------TC---CCCSCEEEEECCSSSCCEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc---------------------ccCCccceEEEEEEEEEcCCcEEEEEEEE
Confidence 446889999999999999999997432110 001112222222333333 36899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh-------cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR-------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~-------~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+.........|. .+.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999888888889999999999999765444333332 2211 578999999999985
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=148.46 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 30 ~ki~vv-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 30 FKLVLV-GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 677888 9999999999888877777766667666666667777776 5899999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+... ..++. ..+.+.+ ...+++.+
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~~~~---------------~~~~~~~~ 172 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-QSLAEHY---------------DILCAIET 172 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHHT---------------TCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHH-HHHHHHc---------------CCCEEEEE
Confidence 999864332221 22223332 46899999999998642 12111 2222211 11267889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 173 SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 173 SAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-14 Score=147.51 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=80.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...-. .+....++.......+.+++ ..+.||||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 76 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN---------------------PSFITTIGIDFKIKTVDINGKKVKLQLWDT 76 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC---------------------CSSSCCCSCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---------------------cccCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 34578999999999999999999733210 01122233333334455565 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|...+..+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999888888889999999999999875433332222 22322 378999999999984
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=162.38 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=118.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH----------HHHHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT----------VEVERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~----------~~~~~~~ 71 (1043)
.+|+.++ |..++||+|...+.+.........||+|++.....+.+++..+.||||||+.++. ..+..++
T Consensus 3 ~~~I~lv-G~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLI-GNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4678888 9999999999888888887788899999999999999999999999999998754 1122333
Q ss_pred --hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 72 --RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 72 --~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+.+|++|+|+|++. ......+..++.+.++|+++|+||+|+.... .....+.+.+.++ .
T Consensus 82 ~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~ 143 (274)
T 3i8s_A 82 LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG----------------C 143 (274)
T ss_dssp HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT----------------S
T ss_pred hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC----------------C
Confidence 68999999999985 3445556667777899999999999985321 1111233333321 3
Q ss_pred eeeeeeecccCCcchHHHHHHhhcc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++++||++|.|+++|++.+...+.
T Consensus 144 ~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 144 PVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999986654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=143.37 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=80.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.....+|+++|+.|+|||||+++|+....... .....|.+... ..+.+++ ..+.+||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~--~~~~~~~~~~~~~i~D 76 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------------HDLTIGVEFGA--RMVNIDGKQIKLQIWD 76 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCSSEEE--EEEEETTEEEEEEEEC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------CCCcccceeEE--EEEEECCEEEEEEEEE
Confidence 34568999999999999999999974321110 01112222222 2333444 5899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999999888888899999999999999875443333222 23332 378999999999985
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=144.31 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=110.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 7 ~~~i~v~-G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 7 EMRILIL-GLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3677788 99999999997666555543 2233 555566677888999999999999999888889999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++.+.+... .. .. ...+++++||+
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~~-~~~~~~~~Sa~ 151 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLP-----AL--KD-RKWQIFKTSAT 151 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGG-----GC--TT-SCEEEEECCTT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCch-----hc--cC-CceEEEECcCC
Confidence 9987543322 222223322 57899999999999764321 1222222100 00 11 12367899999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 152 ~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999886543
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=139.58 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=77.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. ++ ....+... ......++ ..+.+||||
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------------~~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVD----------------DY---DPTIEDSY---LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CC---CTTCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CC---CCCcccee---EEEEEeCCcEEEEEEEECC
Confidence 45789999999999999999997321100 00 00111111 22233344 456779999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+.+........ +.+.....++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 99999888889999999999999999753322222 22333346789999999999863
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=141.60 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=79.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
.+..+|+++|+.|+|||||+++|+...-.. ...+++.......+.+++ ..+.||||
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt 69 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE----------------------DYEPTKADSYRKKVVLDGEEVQIDILDT 69 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT----------------------TCCTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC----------------------CCCCccceEEEEEEEECCEEEEEEEEcC
Confidence 346799999999999999999997432100 011111111122334444 47999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999874333222222 2222 2478999999999985
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=140.29 Aligned_cols=111 Identities=22% Similarity=0.135 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+...... . ....+.......+.+.+ ..+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE--------K--------------YDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc--------c--------------CCCCcceeEEEEEEECCEEEEEEEEECCCc
Confidence 579999999999999999997432110 0 00001111122233343 56999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+... +.+.+...+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 999998889999999999999999753322222 2222223578999999999975
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=143.90 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=77.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|+... .. .....++|.......+.+++..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~--~~-------------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN--VD-------------------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC--EE-------------------EECC-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--Cc-------------------cCCCCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 45789999999999999999997431 10 0112345555555566778899999999999
Q ss_pred CCch---------HHHHHHhHhcCeEEEEEeCCCCcchH---HHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 278 VDFT---------VEVERALRVLDGAILVLCAVGGVQSQ---TLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~---------~e~~~~l~~~D~~ilVvda~~g~~~~---t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
.++. ..+....+.+|++|+|+|+.+..... ....+..+... ++|+++|+||+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 87 LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 4321 12233457789999999998764422 23344445444 899999999999863
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=147.03 Aligned_cols=154 Identities=16% Similarity=0.052 Sum_probs=108.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+ .+. ..|.......+.+++..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 21 ~~~i~v~-G~~~~GKSsli~~l~~~~~-~~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 21 EHKVIIV-GLDNAGKTTILYQFSMNEV-VHT--SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHHTTSC-EEE--ECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCC-Ccc--CCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4678888 9999999999777776655 222 23444445667778999999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+ . ..++|+++|+||+|+...... +++.+.+. +.... ....+++++||+
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sa~ 165 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLK-------LTSIK-DHQWHIQACCAL 165 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGGCC-SSCEEEEECBTT
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhC-------ccccc-CCceEEEEccCC
Confidence 99876443332 222222 2 257899999999999753222 22222221 00000 112367999999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|++++++.+..
T Consensus 166 ~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 166 TGEGLCQGLEWMMS 179 (181)
T ss_dssp TTBTHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHh
Confidence 99999999998864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=140.41 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+..... ......|.+.. ....+......+.+|||||+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG--------------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------------CEEE-EEEEETTEEEEEEEEECC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc--------------------CCCCccccceE-EEEEECCEEEEEEEEECCCCc
Confidence 357999999999999999999632111 01123334432 122233344678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99888888899999999999998643322222 2233332 4789999999999863
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=145.31 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCC----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGH----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~----------~~~~~~~~~~ 70 (1043)
.+|+.++ |..++||+|...+..... ......+|+|++..... .+.++.+|||||+ ..+...+..+
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 23 KGEVAFV-GRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TCEEEEE-EBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3677777 999999999976666554 33456677777655433 3567999999994 3455555556
Q ss_pred hhhc---CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 71 LRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 71 ~~~a---D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++.+ |++++|+|++.+.......+..++...++|+++|+||+|+.... .....+.+.+.+. ...
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~ 166 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS------------KYG 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH------------SSC
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh------------hcC
Confidence 6655 99999999998888888888888888899999999999997532 3333344443321 112
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 246789999999999999999987654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-14 Score=139.95 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=77.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. +....++.......+.++ ...+.+||||
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK---------------------DYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---------------------CSSCCCSSSEEEEEEEETTEEEEEEEECCT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCceEEEEEEEEEEECCEEEEEEEEcCC
Confidence 45789999999999999999997431100 001111111222223333 3589999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .+.|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 9999888888889999999999999875433322222 22222 488999999999975
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=139.34 Aligned_cols=113 Identities=21% Similarity=0.158 Sum_probs=75.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+..... . . + ....+... .....+..+...+.+|||||+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--~------~--------~---~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--E------K--------Y---DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--C------S--------C---CCCSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--C------C--------C---CCCccceE-EEEEEECCEEEEEEEEECCChHH
Confidence 57999999999999999999742110 0 0 0 00001111 11111222346799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|+.+........ .+..+ ...++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9998889999999999999998743222221 22222 23488999999999985
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=137.24 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=76.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|++|+|||||+++|+........ ....+.+.. ...........+.+|||||+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY-------------------IPTVEDTYR-QVISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC-------------------CCCSCEEEE-EEEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------CCCccccEE-EEEEECCEEEEEEEEECCCch
Confidence 367999999999999999999742211000 000111111 111122234578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++++|+|+.+...... ...+..+.+ .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 999999999999999999999986433222 223333332 378999999999975
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=145.31 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=81.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT---------------------NDYISTIGVDFKIKTVELDGKTVKLQIWDT 64 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC---------------------TTCCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCcccceeEEEEEEECCEEEEEEEEeC
Confidence 45689999999999999999999743211 01112222223333344444 58999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999988888889999999999999976544443333 22222 4689999999999863
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.7e-14 Score=144.19 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=81.0
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+.....+|+++|+.|+|||||+++|+...-. . . ...++.......+.+++ ..+.+|
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~--~------~--------------~~~t~~~~~~~~~~~~~~~~~~~i~ 71 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP--E------E--------------YVPTVFDHYAVSVTVGGKQYLLGLY 71 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC--C------S--------------CCCSSCCCEEEEEESSSCEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCC--C------C--------------CCCcccceeEEEEEECCEEEEEEEE
Confidence 3456689999999999999999999843110 0 0 00011111112233444 678999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH--HHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~--~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
||||+.+|......+++.+|++++|+|+.+....+... .+..+... ++|+++|+||+|+..
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999999888888889999999999998754333332 23344443 889999999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=144.23 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=82.1
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|+.... . .+...++|+......+.+++..+++|||||+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV---Y------------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE---E------------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---c------------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 47899999999999999999973210 0 11234667776677778889999999999999
Q ss_pred CchH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.. .....++ .+|++++|+|+.. .......+..+...+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 66 SLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp CCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 8842 2333443 4899999999875 2333444555666789999999999963
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=145.21 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=106.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 29 ~~ki~v~-G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 29 QMRILMV-GLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4677888 99999999998777666654 3344 555666677888899999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+.. .++|+++|+||+|+...... +++.+.++.. .. . ....+++++||+
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~-----~~--~-~~~~~~~~~SA~ 173 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQ-----HL--R-SRTWYVQATCAT 173 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--S-SCCEEEEECBTT
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcc-----cc--c-CCceEEEECcCC
Confidence 99865332222 22222222 37899999999999754221 2233322110 00 0 112467899999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 174 ~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTBTHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999999999987654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=144.14 Aligned_cols=116 Identities=22% Similarity=0.149 Sum_probs=81.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...... ......|++.......+......+.||||||+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-------------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-------------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-------------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCc
Confidence 45789999999999999999997432110 00112233333333333334578999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
.+|......+++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 99988888999999999999999876444333333 23322 467999999999984
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=146.71 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=83.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDt 274 (1043)
+..+|+++|++|+|||||+++|+...-. . ....++ .....+.++ +..+.+|||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~--------------------~~~~~~--~~~~~~~~~~~~~~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--D--------------------TQTSIT--DSSAIYKVNNNRGNSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--C--------------------BCCCCS--CEEEEEECSSTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--c--------------------ccCCcc--eeeEEEEecCCCccEEEEEEC
Confidence 4578999999999999999999743210 0 011111 112224555 578999999
Q ss_pred CCCCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHH---HHHHH------hcCCCeEEEEeccCCCCC-CHHHHHHHH
Q psy11896 275 PGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTV---NRQMK------RYDVPCIAFINKLDRLGA-DPYRVINQM 343 (1043)
Q Consensus 275 PG~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~---~~~~~------~~~~p~ivviNKiD~~~~-~~~~~~~~i 343 (1043)
||+.+|.. .+..+++.+|++++|+|+.. ........ |.... ..++|+++|+||+|+... ...+..+.+
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 99999987 56667899999999999986 22222222 22221 246899999999999754 455555666
Q ss_pred HHHhC
Q psy11896 344 RQKVG 348 (1043)
Q Consensus 344 ~~~l~ 348 (1043)
.+.++
T Consensus 141 ~~~l~ 145 (214)
T 2fh5_B 141 EKELN 145 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=137.25 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+...-.. . ...++.......+.+.+ ..+.+|||||
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~G 61 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE--------D--------------YEPTKADSYRKKVVLDGEEVQIDILDTAG 61 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC--------C--------------CCCCcceEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997432100 0 00111111112233343 5799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999999999974432222222 2222 2378999999999975
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-14 Score=162.87 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=90.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC-
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV- 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~- 278 (1043)
.+|+++|.+|+|||||+|+|+.....+ .....|+|.+.....+.+++..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--------------------vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~ 303 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--------------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 303 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--------------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--------------------cCCCCCeeeeeEEEEEecCCeEEEEEECCCccc
Confidence 579999999999999999998543211 12255778777777888899999999999998
Q ss_pred Cch--------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~--------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++. .....+++.+|++|+|+|+.++...+...+++.+ .++|+++|+||+|+..
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 654 2346678999999999999988777777777655 4889999999999863
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=135.69 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=75.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|+.|+|||||+++|+...... . ...++.......+... ...+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 61 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD--------E--------------CDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc--------c--------------cCCccceEEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999997432110 0 0001111111223333 356889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHh----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 9999988899999999999999986533222222 222222 3789999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=147.07 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=80.0
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------- 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 265 (1043)
.++..+|+++|+.|+|||||+++|+....... ....++.......+.+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPK---------------------FITTVGIDFREKRVVYNAQGPNGSSGK 80 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCE---------------------EEEEEEEEEEEEEEEEEC-------CC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcC---------------------CCCceeEEEEEEEEEECCccccccccC
Confidence 35568999999999999999999974321100 00111111111122222
Q ss_pred --CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh----cCCCeEEEEeccCCC
Q psy11896 266 --DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 --~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~ 332 (1043)
...+.||||||+.+|...+...++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 81 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred ceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 4689999999999999888999999999999999987544443333322 221 568999999999985
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=142.59 Aligned_cols=115 Identities=21% Similarity=0.152 Sum_probs=77.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
.+..+|+++|+.|+|||||+++|+...-.. .....++.......+.+++ ..+.+|||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 76 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD---------------------RTEATIGVDFRERAVDIDGERIKIQLWDT 76 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS---------------------SCCCCCSCCEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCCcceEEEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999997421110 0011122222223334444 68999999
Q ss_pred CCCCCch-HHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFT-VEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~-~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|. .....+++.+|++|+|+|+.+.........| +.+...++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998887 6677788999999999999875433322222 22223578999999999985
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=147.19 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=79.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN---------------------QYKATIGADFLTKEVMVDDRLVTMQIWDT 64 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS---------------------SCCCCCSEEEEEEEEESSSCEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 346789999999999999999997432110 0011222333333344443 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh-------cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR-------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~-------~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++|+|+|+.++........|.. +.. .++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999888777788899999999999987654433333322 111 478999999999986
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=144.86 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|++|+|||||+++|+.... .. ++ ....+.+. ...+.+++ ..+.+||
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~---------------~~---~~t~~~~~---~~~~~~~~~~~~~~l~D 60 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQF-VD---------------SY---DPTIENTF---TKLITVNGQEYHLQLVD 60 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSC-CS---------------CC---CTTCCEEE---EEEEEETTEEEEEEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCC-CC---------------CC---CCCccccE---EEEEEECCEEEEEEEEe
Confidence 34568999999999999999999973221 00 00 01112222 22234444 6789999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+........ +.+.+...++|+++|+||+|+.
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999998777777888999999999998743322222 2233334578999999999985
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=138.63 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=77.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|+.|+|||||+++|+...-. . ....++.......+.+.+ ..+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--E--------------------DYEPTKADSYRKKVVLDGEEVQIDILDTA 74 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--C--------------------SCCTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--C--------------------cCCCccceEEEEEEEECCEEEEEEEEECC
Confidence 4578999999999999999999743210 0 001111111122233444 579999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HH----HHhcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~----~~~~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+....+....| .. ....++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999874332222222 22 222478999999999975
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=136.46 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
+.+|+++|++|+|||||+++|+........ ....+.......+.++ ...+.+|||||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 60 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH---------------------EMENSEDTYERRIMVDKEEVTLIVYDIWE 60 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------------------------CEEEEEEEETTEEEEEEEECCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc---------------------cCCCcCCeeeEEEEECCeEEEEEEEECCC
Confidence 468999999999999999999743221110 0111122222223344 36788999999
Q ss_pred CCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~ 332 (1043)
+.+|.. .....++.+|++++|+|+.+......... +..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp C--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 999876 34455788999999999987433222222 222222 378999999999975
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=153.10 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=86.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....+|+++|.+|+|||||+++++...-. .......|++.......+..++..+.+|||||
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE-------------------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHT-------------------CEEETTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 34578999999999999999996522100 00122445666665555555667899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHH-h--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK-R--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~-~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+....|.... . .++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 9999888888999999999999999865544444443222 2 2889999999999863
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=146.07 Aligned_cols=153 Identities=14% Similarity=0.024 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+|
T Consensus 11 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 11 FKFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 677888 9999999999888887887777788888777777777776 5899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHH---HhcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQM---KRYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l---~~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++......... +..+ ...++|+++|+||+|+... ...+. ..+... . ..+++.+
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~-------------~---~~~~~~~ 152 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQE-------------N---ELMFLET 152 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHH-------------c---CCEEEEe
Confidence 99986433222221 2222 2357899999999998532 11111 111111 1 1367889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876554
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=142.50 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=108.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |+.++||+|...+...+... +..| |.......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 16 ~~ki~iv-G~~~vGKSsL~~~l~~~~~~-~~~~--t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 16 EVRILLL-GLDNAGKTTLLKQLASEDIS-HITP--TQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHCCSCCE-EEEE--ETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCC-cccC--cCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 3678888 99999999997776655432 2222 333344566778899999999999999999999999999999999
Q ss_pred eCCCCCchhHH-HHHH-HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNR-QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~-~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+. .+. ..++|+++|+||+|+...... +++.+.++ +.... ....+++++||+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~-------~~~~~-~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLN-------LHTIR-DRVWQIQSCSAL 160 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTT-------GGGCC-SSCEEEEECCTT
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhC-------chhcc-CCceEEEEccCC
Confidence 99865433222 1222 222 247899999999999754321 22333221 00000 112467899999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-14 Score=141.45 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLL-GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3678888 9999999999877777777766677666666555666654 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC-----HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD-----PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~-----~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+.... .......+.... ..++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----------------~~~~ 145 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK----------------GLLF 145 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH----------------TCEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc----------------CCEE
Confidence 99998643333222 1222222 378999999999986431 111112221111 1367
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+...+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-13 Score=140.03 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE---ecCeeEE
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---WKDHNIN 270 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~i~ 270 (1043)
.+.++..+|+++|..|+|||||++++...... ....+.+......... .+...+.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP----------------------NETLFLESTNKIYKDDISNSSFVNFQ 72 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG----------------------GGGGGCCCCCSCEEEEECCTTSCCEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC----------------------cceeeeccccceeeeeccCCCeeEEE
Confidence 44455678999999999999999987632110 0111111122222222 3457899
Q ss_pred EEcCCCCCCchHHH---HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVDFTVEV---ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~df~~e~---~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+|||||+.+|.... ..+++.+|++|+|+|+.+........+..++.. .++|+++|.||+|+..
T Consensus 73 i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp EEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 99999999987776 788999999999999998733333333333332 3789999999999874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-14 Score=139.68 Aligned_cols=114 Identities=19% Similarity=0.062 Sum_probs=71.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. +....++.......+.+++ ..+.+||||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND---------------------KHITTLGASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS---------------------SCCCCCSCEEEEEEEESSSCEEEEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc---------------------CCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 45789999999999999999997432110 0011112222222333333 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|+.+....+....| ..+ ...++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp CC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999888877788999999999999875443333322 222 23578999999999975
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=155.48 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=78.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+... ... . . .|+......+.+++..++||||||+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~~~---------------~-----~--pT~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--IVT---------------T-----I--PTIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--CEE---------------E-----E--EETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--CCC---------------c-----c--cccceEEEEEecCcEEEEEEECCCC
Confidence 34589999999999999999996321 100 0 0 1333445567788999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchH--HHHHHHHHHh---cCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~--t~~~~~~~~~---~~~p~ivviNKiD~~~~ 334 (1043)
.+|......+++.+|++|+|+|+.+..... ...+...... .++|+++|+||+|+...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999988899999999999999997643322 2222233222 37899999999998754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-14 Score=144.81 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=104.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +.. .|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 25 ~~ki~lv-G~~~vGKSsLi~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 25 TGKLVFL-GLDNAGKTTLLHMLKDDRLG-QHV--PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCC-ccC--CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 3677777 99999999997776665543 222 3555566788888999999999999988888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc--cc---ccCCCCccceeee
Q psy11896 82 CAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN--ES---LSEHKPIEYIRNI 151 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~--~~---l~~~~~~~~~~ii 151 (1043)
|+++..+.... ..+..+. ..++|+++|+||+|+.+.... +++.+.+...... .+ +.. ......+++
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 176 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE---ERLREMFGLYGQTTGKGSVSLKE-LNARPLEVF 176 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH---HHHHHHHTCTTTCCCSSCCCTTT-CCSCCEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCH---HHHHHHhCccccccccccccccc-ccCceEEEE
Confidence 99865433222 1222222 247899999999999753222 2233322211000 00 000 011335789
Q ss_pred eeeecccCCcchHHHHHHhh
Q psy11896 152 GISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++||++|.|++++++.+...
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=143.96 Aligned_cols=154 Identities=16% Similarity=0.064 Sum_probs=113.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 15 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 93 (179)
T 2y8e_A 15 FKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 93 (179)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 677788 9999999999888887887777888888887777777776 4799999999999998899999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+. ..++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 157 (179)
T 2y8e_A 94 YDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL----------------NVMFIETS 157 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TCEEEEEB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc----------------CCeEEEEe
Confidence 999863322221 1222222 24789999999999864211 11111111111 13678899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999986553
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-14 Score=146.69 Aligned_cols=154 Identities=15% Similarity=0.024 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+++|.+.....+.+++ ..+.+|||||+.++...+..+++.+|++|+|
T Consensus 10 ~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (181)
T 3tw8_B 10 FKLLII-GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88 (181)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence 678888 9999999999988888888888889999888888888887 6799999999999888888899999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|++++....... .+..+.. .++|+++|+||+|+..... ......+.... ..+++++||
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa 152 (181)
T 3tw8_B 89 YDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM----------------GIQLFETSA 152 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCCEEECBT
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc----------------CCeEEEEEC
Confidence 9998743333322 2222222 2589999999999864321 11112222211 135688999
Q ss_pred cccCCcchHHHHHHhhcc
Q psy11896 156 HIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~ 173 (1043)
++|.|++++++.+...+.
T Consensus 153 ~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVL 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-14 Score=144.18 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. ....|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 23 ~~ki~~v-G~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 23 HGKLLFL-GLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -CEEEEE-ESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 3677777 99999999997666655543 2234666667788889999999999999998888888899999999999
Q ss_pred eCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc-cccccCCCCccceeeeeeee
Q psy11896 82 CAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS-NESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+++..+..... .+..+. ..++|+++|+||+|+...... +++.+.+..... ..+. .......+++++||
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQR--IEGQRPVEVFMCSV 173 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTCSSCCC-----CCSSCCEEEEECBT
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH---HHHHHHhCCcccccccc--ccccceEEEEEeEC
Confidence 998754333222 222222 257899999999999753221 233333321100 0000 01112346899999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999988753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=139.47 Aligned_cols=116 Identities=18% Similarity=0.096 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+...-.. . + ....+.+.. ...........+.+|||||+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~---~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------T--------Y---IPTIEDTYR-QVISCDKSVCTLQITDTTGS 66 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--------T--------T---SCCCCEEEE-EEEEETTEEEEEEEEECCGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--------c--------c---cCcccccee-EEEEECCEEEEEEEEeCCCh
Confidence 34789999999999999999997421100 0 0 001111111 11112223457999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99998888899999999999999864332222 22222222 3789999999999863
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-14 Score=143.90 Aligned_cols=155 Identities=16% Similarity=0.021 Sum_probs=108.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 3 IMKILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 3678888 9999999999888887777777788888777777777765 479999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+.... ..+..+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 145 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------IPFIESS 145 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT----------------CCEEECB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC----------------CeEEEEE
Confidence 9999864332222 22222322 378999999999995322 1122222222211 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 146 a~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-14 Score=147.57 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=112.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 27 ~ki~lv-G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 27 FKIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 678888 9999999999887777777777777777777767777776 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+..... .+..+. ..++|+++|+||+|+.+.. ..+....+.... ..+++++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~S 169 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ----------------DMYYLETS 169 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCCEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----------------CCEEEEEe
Confidence 9998643322211 222222 2468899999999986321 111112222111 13568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 170 a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999886654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=156.63 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=119.4
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCc-ch--------HHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHV-DF--------TVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-~~--------~~~~~~~~~~ 73 (1043)
++.|+ |..++||+|...+.+..... ....+++|++...+.+.+++.++++|||||+. .. ...+..+++.
T Consensus 10 ~VaIv-G~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 10 FIAIV-GRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEE-CSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEEEE-CCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 45666 99999999986666655443 35678999998888888999999999999998 32 2223556788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++. +...+..+++.+...++|+++++||+|+.. +.....+.+.+.. ....+..++++
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~------------~~~~~~~~i~i 154 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLA------------SQMNFLDIVPI 154 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHH------------TTSCCSEEEEC
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHH------------HhcCcCceEEE
Confidence 999999999987 888888888888777899999999999975 2333333332211 01223467999
Q ss_pred eecccCCcchHHHHHHhhcccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRI 175 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~ 175 (1043)
||++|.|+++|++.+...+++-
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBC
T ss_pred ECCCCCCHHHHHHHHHHhCCcC
Confidence 9999999999999999887653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-14 Score=155.98 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=115.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHh--hhc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERAL--RVL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~--~~a 74 (1043)
+|+.++ |..++||||...+.+.........||+|++.....+.+.+..+.||||||+.++.. ....++ ..+
T Consensus 6 ~kI~lv-G~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 84 (258)
T 3a1s_A 6 VKVALA-GCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDA 84 (258)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCC
Confidence 577777 99999999998888887777788899999999999999899999999999986542 223444 579
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++.. ......+.++...++|+++|+||+|+..... ....+.+.+.++ .+++++
T Consensus 85 d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----------------~~vi~~ 146 (258)
T 3a1s_A 85 DLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----------------IPVVFT 146 (258)
T ss_dssp SEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----------------SCEEEC
T ss_pred CEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC----------------CCEEEE
Confidence 999999999852 3444556677778999999999999743110 001233333321 367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|+++|++.+....
T Consensus 147 SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHh
Confidence 9999999999999998654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=141.64 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=76.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.. . ...++.......+.++ ...+.+|||||
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 62 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG--------E--------------YIPTVFDNYSANVMVDGKPVNLGLWDTAG 62 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--------S--------------CCCCSCCEEEEEEEETTEEEEEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC--------C--------------cCCcccceeEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997422100 0 0001101111122333 35677999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.++...+... .| ..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred CHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 9998877777889999999999999765444432 23 333333 889999999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-14 Score=141.35 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 7 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 7 LFKVILL-GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 3677888 9999999999888877777777778777777677777776 489999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---h----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---R----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++........ ....+. . .++|+++|+||+|+.... ..+....+... ....++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~ 150 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---------------NGDYPY 150 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---------------TTCCCE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---------------cCCceE
Confidence 99998643322221 112221 1 568999999999986322 11111222111 112357
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+...+
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999987654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=148.34 Aligned_cols=156 Identities=15% Similarity=0.017 Sum_probs=116.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 20 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 20 IMKILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3677888 9999999999888887777777888888888777788777 579999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++....... ..+..+.. .++|+++|+||+|+..... ......+...++ .+++++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 162 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------IPFIESS 162 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT----------------CCEEECB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC----------------CEEEEEe
Confidence 9999864332221 22222322 3689999999999953221 112222222211 2578899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876643
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-14 Score=143.74 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+. ..+..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 18 ~~~i~v~-G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (186)
T 1ksh_A 18 ELRLLML-GLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93 (186)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 3677777 999999999977766655 333333 445556677778999999999999998888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+.... ..+..+ . ..++|+++|+||+|+.+.... +++.+.+. +.. ......+++++||+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~Sa~ 162 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALE-------LDS-IRSHHWRIQGCSAV 162 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGG-CCSSCEEEEECCTT
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhC-------hhh-ccCCceEEEEeeCC
Confidence 99875433332 222222 2 247899999999999754321 22333221 000 00112467999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 163 ~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 163 TGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=143.70 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|+.|+|||||+++|+...... +....++.......+.+++ ..+.|||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D 80 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ---------------------DSNHTIGVEFGSRVVNVGGKTVKLQIWD 80 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC---------------------------------CCEEEEEEEETTEEEEEEEEC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc---------------------cCCCcccceeEEEEEEECCeeeEEEEEc
Confidence 3456899999999999999999997332110 0111222222223344444 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 999988777778889999999999999975544433333 2222 2478999999999975
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=145.13 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=101.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 28 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 28 AYKIVLA-GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp CEEEEEE-SSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CeEEEEE-CcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 4678888 9999999999877777766655555444444444455554 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCC-------C-HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGA-------D-PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~-------~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
|+|+++......... +..+.. .++|+++|+||+|+... . ..+....+.... .
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~----------------~ 170 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY----------------G 170 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH----------------T
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc----------------C
Confidence 999986443333222 222322 37899999999998521 1 111111221111 1
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++|.|++++++.+...+
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=144.57 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=78.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.- ....++.......+.+++ ..+.+|||||
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 87 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG----------------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-----------------------CCCCSEEEEEEEEECC-CEEEEEEEEECC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCC----------------------CcCCeecceeEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997322110 011122222222233333 4566999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+... .| ..+... ++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred chhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 9999888888889999999999999865554443 23 333333 899999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=145.87 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=109.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc------ch---HHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV------DF---TVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~------~~---~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+...+.+.....+++|.+.....+..++..+.||||||+. .. ...+..++.
T Consensus 29 ~~kI~vv-G~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 29 KKTIILS-GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 4677888 9999999999888777777666778899998888888888999999999993 31 223345578
Q ss_pred hcCEEEEEEeCCCCCchh---HHHHHHHHHhc--CCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCc
Q psy11896 73 VLDGAILVLCAVGGVQSQ---TLTVNRQMKRY--DVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~---~~~~~~~l~~~--~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
.+|++|+|+|+++..+.. ....+..+... ++|+++|+||+|+.... . ....+.+..... . . .
T Consensus 108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~------~-~ 176 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD----N------V-K 176 (228)
T ss_dssp SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH----H------C-C
T ss_pred cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH----h------c-C
Confidence 889999999998754432 23344555554 79999999999996531 1 111111211110 0 0 0
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||++|.|++++++.+...+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 1246789999999999999999887654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=138.74 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=68.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+...... . ..+++.......+.+.+ ..+.+|||||
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD--------E--------------YDPTIEDSYRKQVVIDGETCLLDILDTAG 78 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc--------c--------------cCCccceEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997432100 0 00111111122233444 5699999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999988888899999999999999875443333332 22222 3789999999999863
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-14 Score=146.60 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=103.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.+. ......+..++ +++.+|||||+.++...+..+++.+|++++|
T Consensus 7 ~ki~~~-G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 7 RKIAIL-GYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 678888 9999999999777766665544444333 33255556666 5689999999999877778889999999999
Q ss_pred EeCCCCCchhHHH-----HHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-----~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++........ +.......++|+++|+||+|+.... .......+.+.+ . .+++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 148 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-------------N---AAFLES 148 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh-------------C---CcEEEE
Confidence 9998633222221 1222223478999999999986432 111122222221 1 257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986553
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=144.04 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=109.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..+ ..++.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 9 FKILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 678888 999999999987777777665555555544444444444 35899999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.... .......+.+.++ .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~S 151 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG----------------FEFFEAS 151 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT----------------CEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC----------------CeEEEEE
Confidence 9998643322222 2223333 478999999999996532 1112222222211 2578999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-14 Score=144.46 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchH-HHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFT-VEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~-~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+.+++ .++.||||||+.++. ..+..+++.+|++|
T Consensus 20 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 20 IFKIIVI-GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 3678888 9999999999888777777777777777777666777766 589999999999988 77888999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+..... ....+ ...++|+++|+||+|+.... ..+....+.... . .+++
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~ 162 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-------------S---MPLF 162 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------T---CCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc-------------C---CEEE
Confidence 999998643222211 11222 23478999999999985421 111122222211 1 2568
Q ss_pred eeeeccc---CCcchHHHHHHhh
Q psy11896 152 GISAHID---SGKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g---~Gi~~L~~~l~~~ 171 (1043)
++||++| .|++++++.+...
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC--
T ss_pred EEeCCcCCcccCHHHHHHHHHHH
Confidence 8999999 8888888887654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-14 Score=142.84 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=106.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+ . ....|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 18 ~~~i~v~-G~~~~GKssli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (183)
T 1moz_A 18 ELRILIL-GLDGAGKTTILYRLQIGEV-V--TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 93 (183)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTCCSEE-E--EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCc-C--ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4677888 9999999999776665555 2 2334555666777788899999999999988888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+. ..++|+++|+||+|+.+.... +++.+.+. ..... ....+++++||+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sa~ 162 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELN-------LVELK-DRSWSIVASSAI 162 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTT-------TTTCC-SSCEEEEEEBGG
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhC-------ccccc-CCceEEEEccCC
Confidence 99875443322 2222222 257899999999999754222 22333221 10001 122467999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 163 ~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999886553
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=145.39 Aligned_cols=154 Identities=11% Similarity=-0.005 Sum_probs=78.3
Q ss_pred ccceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEecC----eeEEEEeCCCCcchHHHHHHHhhhcCE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLWKD----HNINIIDTPGHVDFTVEVERALRVLDG 76 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~~~----~~i~liDTPG~~~~~~~~~~~~~~aD~ 76 (1043)
+|+.++ |..++||+|...+...+ .+..+..+.+..+.....+.+++ ..+.||||||+.++...+..+++.+|+
T Consensus 21 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 21 CKVAVV-GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 577777 99999999998877777 55555555555566667777774 589999999999999999999999999
Q ss_pred EEEEEeCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCC-C-CH-HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 77 AILVLCAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLG-A-DP-YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~-~-~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+|+|+|+++........ .+..+.. .++|+++|+||+|+.. . .. .+....+.+.+ .
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-------------~-- 164 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-------------T-- 164 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-------------T--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-------------C--
Confidence 99999998654322222 2223332 4789999999999965 2 11 11112222211 1
Q ss_pred ceeeeeeeecc-cCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHI-DSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~-g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++ |.|++++++.+...+.
T Consensus 165 -~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 165 -LDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -CEEEECCC-------CHHHHHHHHHHH
T ss_pred -CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 3678999999 9999999999887654
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-14 Score=144.39 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccc-eEEEEec-----------CeeEEEEeCCCCcchHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWK-----------DHNINIIDTPGHVDFTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~~~-----------~~~i~liDTPG~~~~~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.. ...+..+ ...+.||||||+.++...+..+
T Consensus 12 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 12 IKFLAL-GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 577777 99999999998777766666555555555444 3445544 3589999999999999999999
Q ss_pred hhhcCEEEEEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCC
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+...+
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------- 157 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY------------- 157 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-------------
Confidence 9999999999999864333322 22222322 478999999999986421 111222222211
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. .+++++||++|.|++++++.+...+.
T Consensus 158 ~---~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 158 G---IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp T---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 25688999999999999999887654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=143.40 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=107.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHH-HHHHHhhhcCEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTV-EVERALRVLDGA 77 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~-~~~~~~~~aD~i 77 (1043)
.+|+.++ |+.++||+|...+.+.+.+.... +.++ .....+.++ +.++.+|||||+.++.. .+..+++.+|++
T Consensus 7 ~~ki~vv-G~~~~GKTsli~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 7 QRAVLFV-GLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -CEEEEE-CSTTSSHHHHHHHHHHSCCCCBC-CCCS--CEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCccccc-CCcc--eeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 4788888 99999999998777766655433 3333 333446666 57899999999999988 677889999999
Q ss_pred EEEEeCCCCCchhHHHHHHH----HH-----hcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhh---------------
Q psy11896 78 ILVLCAVGGVQSQTLTVNRQ----MK-----RYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSR--------------- 132 (1043)
Q Consensus 78 IlVvDa~~~~~~~~~~~~~~----l~-----~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~--------------- 132 (1043)
|+|+|++. ..........+ +. ..++|+++|+||+|+... ......+.+.+.+..
T Consensus 83 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 83 VFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999985 22222222221 11 236899999999999754 444445555544431
Q ss_pred -----ccccccccCCCCc----cceeeeeeeeccc------CCcchHHHHHHhh
Q psy11896 133 -----WISNESLSEHKPI----EYIRNIGISAHID------SGKTTLTERILFY 171 (1043)
Q Consensus 133 -----~~~~~~l~~~~~~----~~~~ii~iSa~~g------~Gi~~L~~~l~~~ 171 (1043)
.....+ ..+.. ...+++.+||++| .|++++++.+...
T Consensus 162 ~~~~~~~~~~~--~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKG--KEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTT--SCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCC--CCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111000 00111 0346789999999 9999999988753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=146.02 Aligned_cols=155 Identities=14% Similarity=-0.011 Sum_probs=108.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 21 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 21 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 3678888 9999999999888777777766777667666666666665 489999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+.... ..+++.+
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~ 163 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH----------------GLIFMET 163 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc----------------CCEEEEE
Confidence 9999864332222 22223332 378999999999986421 111112222211 1257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=145.67 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=78.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.|||
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D 68 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD---------------------SKSTIGVEFATRTLEIEGKRIKAQIWD 68 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------CCSEEEEEEEETTEEEEEEEEC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCcccceeEEEEEEECCEEEEEEEEE
Confidence 34568999999999999999999974321110 011122222223344555 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999988788888999999999999976544443333 23332 378999999999975
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-14 Score=141.57 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 5 AIKMVVV-GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 3677777 9999999999887777777766777777776666666665 479999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh--cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~--~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+.... .....+.. .++|+++|+||+|+.... ..+....+.+.+ ..+++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 147 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL----------------KLRFYRTS 147 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc----------------CCeEEEEe
Confidence 9999864322221 12222222 478999999999986421 111122222211 12678999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 148 a~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp TTTTBSSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999987543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-14 Score=146.81 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=101.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.++ ...+.+|||||+.++...+..+++.+|++|
T Consensus 8 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 8 ILKVIIL-GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 3677788 999999999988888787777777887777777777665 357999999999999988889999999999
Q ss_pred EEEeCCCCCchhHHHH-HHHHHh-------cCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 79 LVLCAVGGVQSQTLTV-NRQMKR-------YDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~-~~~l~~-------~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|+|+++......... ...+.. .++|+++|+||+|+.... .......+... ...
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---------------~~~ 151 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---------------LGD 151 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH---------------TTS
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh---------------cCC
Confidence 9999986433222221 122211 578999999999985321 11111222211 112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++|.|++++++.+...+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987644
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=141.67 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=107.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++... ...+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 18 ~~ki~v~-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 18 TYKLVVV-GDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 3688888 9999999999777776666655555554443 455555655 46679999999998889999999999999
Q ss_pred EEeCCCCCchhHH-----HHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-----~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .+.......++|+++|+||+|+.+.. .......+.+.+ . .++++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~ 159 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-------------N---IPYIE 159 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-------------T---CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-------------C---CeEEE
Confidence 9999864322211 12222233578999999999986421 111222222221 1 35688
Q ss_pred eeec-ccCCcchHHHHHHhhc
Q psy11896 153 ISAH-IDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~l 172 (1043)
+||+ +|.|++++++.+...+
T Consensus 160 ~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EBCSSSCBSHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHH
Confidence 9999 9999999999987653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-14 Score=142.25 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=102.9
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+|+.++ |..++||+|...+...+.+. ....++++.+.....+..++. ++.+|||||+.++...+..+++.+|++|+
T Consensus 11 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (180)
T 2g6b_A 11 FKVMLV-GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 89 (180)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence 577777 99999999997777666653 355677777766666666654 79999999999999989999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.+.. . .+++++
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 153 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-------------G---LPFMET 153 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-------------T---CCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc-------------C---CeEEEE
Confidence 9999864332222 22222322 578999999999997532 111122222211 1 256889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-14 Score=145.06 Aligned_cols=157 Identities=10% Similarity=0.000 Sum_probs=110.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 22 ~~~i~v~-G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 22 KIRVLML-GLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 4677788 99999999997777666554 2333 555666777888999999999999988877778889999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+...... +++.+.+... .. .. ...+++++||+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~~-~~~~~~~~Sa~ 166 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVS-----SI--MN-RTWTIVKSSSK 166 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--CS-SCEEEEECCTT
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChh-----hc--cC-CceEEEEccCC
Confidence 9987543332 222222222 37899999999999754321 2222222100 00 11 12367999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 167 ~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 167 TGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH
Confidence 99999999999886653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=144.35 Aligned_cols=116 Identities=19% Similarity=0.078 Sum_probs=72.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-..... .+. +.... ....+......+.+|||||+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~---------~t~----------~~~~~-~~~~~~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV---------PTV----------FDNFS-ANVVVNGATVNLGLWDTAGQ 66 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CB-CCCC-------CEEECCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---------Cee----------eeeEE-EEEEECCEEEEEEEEECCCC
Confidence 34689999999999999999997432110000 000 00000 00112223456779999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999888888889999999999998754433332 23 23332 2789999999999764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-15 Score=151.89 Aligned_cols=153 Identities=14% Similarity=0.029 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|+..+...+.+..+..+++|.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 34 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 34 FKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEE-CCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 678888 9999999999999988888888888888888888888877 5799999999998888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+...... .....+... .. .+++++|
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~~vS 176 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-------------LG---IPFLETS 176 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-------------TT---CCBCCCC
T ss_pred EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH-------------cC---CeEEEEE
Confidence 99987544333222 222332 26899999999998643110 001111111 11 3568899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 177 A~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C---HHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=139.35 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=107.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+..+.+.....+..+ +.++.+|||||+.++...+..+++.+|++++
T Consensus 6 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 6 QFKLVLL-GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 3678888 999999999987777776665555554444444444444 4589999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+... ..++. ..+... . ..++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~-~~~~~~-------------~---~~~~~~ 147 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEA-QSYADD-------------N---SLLFME 147 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHH-HHHHHH-------------c---CCeEEE
Confidence 99998643322222 2223322 36789999999998542 11111 111111 1 135788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-14 Score=154.53 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+....++|+++|++|+|||||+++|+....... .....++|.......+.+++..++|||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------------------~~~~~~~t~~~~~~~~~~~~~~i~liD 84 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------------------GTAAKSITKKCEKRSSSWKETELVVVD 84 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------------------CCSCEEEEEEETTEEEEEEE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------------------CCCCCceeeeEEEEEEEeCCceEEEEE
Confidence 3445678999999999999999999984322110 112335677777777889999999999
Q ss_pred CCCCCCch-------HHHHHHh----HhcCeEEEEEeCCCCcchHHHHHHHHHH-----hcCCCeEEEEeccCCCCCC-H
Q psy11896 274 TPGHVDFT-------VEVERAL----RVLDGAILVLCAVGGVQSQTLTVNRQMK-----RYDVPCIAFINKLDRLGAD-P 336 (1043)
Q Consensus 274 tPG~~df~-------~e~~~~l----~~~D~~ilVvda~~g~~~~t~~~~~~~~-----~~~~p~ivviNKiD~~~~~-~ 336 (1043)
|||+.+.. .++.+.+ +.+|++|+|+|+..... .....+..+. ....|+++|+||+|+.... .
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 99986532 2333333 45699999999875333 3333333222 2446999999999987432 2
Q ss_pred H-------HHHHHHHHHhCCCceeee
Q psy11896 337 Y-------RVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 337 ~-------~~~~~i~~~l~~~~~~~~ 355 (1043)
. +.++++.+.++....++.
T Consensus 164 ~~~i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 164 HDYLREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp -------CHHHHHHHHHHSSSEEECC
T ss_pred HHHHHhchHHHHHHHHHcCCEEEEEE
Confidence 2 245666666665544333
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=139.74 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=107.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 16 ~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 16 FKYIII-GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 677788 9999999999877776666655555555454445555554 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+. ..++|+++|+||+|+..... .+....+.+. . ..+++++|
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 158 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-------------N---GLLFLEAS 158 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------T---TCEEEECC
T ss_pred EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 99986533322222 22222 25789999999999853211 1111122111 1 13678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 159 a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887543
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-14 Score=149.00 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=109.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------CeeEEEEeCCCCcchHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------DHNINIIDTPGHVDFTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~~~i~liDTPG~~~~~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.++ ..++.||||||+.++...+..+
T Consensus 26 ~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 26 IKLLAL-GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEE-CcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 677777 999999999987777777766666655555554445444 4679999999999999999999
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHH-HHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCC
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~-~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.... .......+.+.+
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~------------- 171 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY------------- 171 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC-------------
Confidence 9999999999999864333222221 11211 467999999999986421 111222222211
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. .+++++||++|.|++++++.+...+..
T Consensus 172 ~---~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 172 G---IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp T---CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred C---CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 256889999999999999999876543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-14 Score=164.41 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=93.8
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH--------HHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~--------~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+.+... ......+|+|++.....+.+++..+.||||||+.++... +..+++.
T Consensus 234 ~kV~iv-G~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 234 VSTVIA-GKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp EEEEEE-CCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 577777 999999999977766653 356788999999999999999999999999999875533 3446789
Q ss_pred cCEEEEEEeCCCCCch----hHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQS----QTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~----~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|++|+|+|++++... ....++..+. ++|+++|+||+|+........ +.+.+. .+.+
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~----------------~~~~ 373 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADG----------------TGTE 373 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHH----------------HTSC
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhc----------------CCCc
Confidence 9999999999987765 3444444333 789999999999976543221 222221 1136
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|+++|++.+...+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 789999999999999999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-14 Score=145.73 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=111.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--------------------------------
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-------------------------------- 49 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-------------------------------- 49 (1043)
.+|+.++ |..++||+|+..+...+.+..+..+.++.+.....+.+++
T Consensus 7 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLL-GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4677888 9999999999888877777766666666666555566554
Q ss_pred -------eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHH-HHHHH-HhcCCCEEEEEecCCCCCCCHH
Q psy11896 50 -------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-KRYDVPCIAFINKLDRLGADPY 120 (1043)
Q Consensus 50 -------~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~-~~~~l-~~~~~piilvlNKiDl~~~~~~ 120 (1043)
..+.||||||+.++...+..+++.+|++|+|+|++++....... .+..+ ...++|+++|+||+|+.....
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~- 164 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQV- 164 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCS-
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccC-
Confidence 78999999999999988999999999999999998754433322 22223 235689999999999432111
Q ss_pred HHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 121 RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+++.+... . . ..+++++||++|.|++++++.+...+
T Consensus 165 -~~~~~~~~~~----~------~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 165 -DILEVQKYAQ----D------N---NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp -CHHHHHHHHH----H------T---TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CHHHHHHHHH----H------c---CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1122222211 0 1 13678999999999999999987654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-14 Score=156.54 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=112.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--h
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--V 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~ 73 (1043)
.+|+.++ |.+++||||.+.+.+.........||+|++...+.+.. +.++.+|||||+.++. ..+..++. .
T Consensus 3 ~~kI~lv-G~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALI-GNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 4688888 99999999998777776666677799999988888776 7899999999998764 34455665 5
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|++++|+|++. .........++.+.++|+++|+||+|+.... .....+.+.+.++ .++++
T Consensus 81 ~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~vi~ 142 (272)
T 3b1v_A 81 ADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----------------VPVVA 142 (272)
T ss_dssp CSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEE
T ss_pred CCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------------CCEEE
Confidence 999999999975 2333444556667899999999999974211 0011123333221 36789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++|++.+....
T Consensus 143 ~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSC
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999997654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-14 Score=146.34 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=114.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++. .+.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 9 FKLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 678888 99999999998888878877777888887777777777664 799999999999888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+.... .......+... .. .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~S 151 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-------------NK---MPFLETS 151 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------------TT---CCEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 99986443333222 222322 368999999999997532 11111222211 11 3568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 152 a~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-14 Score=155.94 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred cCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHH-H
Q psy11896 18 KDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLT-V 94 (1043)
Q Consensus 18 s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~-~ 94 (1043)
+....++.+.+. .+..|.+. +.....+. .+.++.+||| ++++...+..+++++|++|+|+|+++.. ...... .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~-~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPD-ETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECC-CSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEc-CCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 455566666666 55555433 21112222 2337999999 8888888888999999999999998754 333222 2
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+..+...++|+++|+||+|+.+....+..+.+.+.+. .. .+++++||++|.|+++++..+..
T Consensus 108 l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~------------~~--~~~~~~SAktg~gv~~lf~~l~g---- 169 (301)
T 1u0l_A 108 LVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS------------GL--YPIVKTSAKTGMGIEELKEYLKG---- 169 (301)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHT------------TT--SCEEECCTTTCTTHHHHHHHHSS----
T ss_pred HHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHh------------hh--CcEEEEECCCCcCHHHHHHHhcC----
Confidence 2334556899999999999964211001112222111 01 36788999999999999886641
Q ss_pred cccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 175 ISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
..++++|++|+|||||++.|...
T Consensus 170 -------------------------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 -------------------------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp -------------------------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred -------------------------CeEEEECCCCCcHHHHHHHhccc
Confidence 24899999999999999999743
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-15 Score=169.79 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=114.3
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHH
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 342 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~ 342 (1043)
|+++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|+.+. +....+++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 67899999999999887654 3589999999999986643222111 1135799999999999753 33444455
Q ss_pred HHHHhC---C-----CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCC
Q psy11896 343 MRQKVG---H-----NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 414 (1043)
Q Consensus 343 i~~~l~---~-----~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~d 414 (1043)
+.+.++ . .+..+.+....+.++.++.+.+......|.. | ..+|. ....++|..+.|.+ +
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~--~-----~~~~~---~r~~~~~~~~~e~i---~ 285 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA--S-----GRLQQ---VRQQQSVEWLRKQT---E 285 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH--T-----THHHH---HHHHHHHHHHHHHH---H
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh--C-----ChHHH---HHHHHHHHHHHHHH---H
Confidence 555332 1 1112233334666777777766654433321 1 12221 22344667777776 7
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHH
Q psy11896 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLD 468 (1043)
Q Consensus 415 d~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~ 468 (1043)
+.++++|+++ ++.+++..++++++..+.+.|++| .+.|++.+..
T Consensus 286 e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 286 EEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 8899999995 788899999999999999999987 4678877755
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=143.33 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
++..+..+|+++|.+|+|||||+++|+....... + ....+.+. .....+......+.|||
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~-~~~~~~~~~~~~~~l~D 78 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG----------------Y---DPTVENTY-SKIVTLGKDEFHLHLVD 78 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC----------------C---CCCSEEEE-EEEEC----CEEEEEEE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC----------------C---CCccceEE-EEEEEECCEEEEEEEEE
Confidence 3445678999999999999999999984321100 0 00111111 22222334567899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 999999988888888999999999999975433333333 2222 2478999999999975
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-14 Score=142.08 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=104.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 6 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 6 SFKVVLL-GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 3677788 9999999999877777777777777777776666666655 478999999999988888888999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+. ..++|+++|+||+|+.+.. ..+....+.+.. . .+++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 148 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV-------------G---AKHYHT 148 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------------T---CEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc-------------C---CeEEEe
Confidence 99998643322222 122222 2478999999999986421 111112222211 1 356889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=143.04 Aligned_cols=163 Identities=14% Similarity=0.076 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHH---HHHhhhcC
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEV---ERALRVLD 75 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~---~~~~~~aD 75 (1043)
.+|+.++ |+.++||+|... ++.+.+..+...|++.......+.+ ...++.||||||+.+|.... ..+++.+|
T Consensus 20 ~~ki~~v-G~~~vGKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (196)
T 3llu_A 20 KPRILLM-GLRRSGKSSIQK-VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTG 97 (196)
T ss_dssp CCEEEEE-ESTTSSHHHHHH-HHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCS
T ss_pred ceEEEEE-CCCCCCHHHHHH-HHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCC
Confidence 5788888 999999999954 5666666666666665555555443 34689999999999987776 78999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
++|+|+|+++........+..++.. .++|+++|+||+|+...+.. .....+.......+... . ......+
T Consensus 98 ~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~-~---~~~~~~~ 173 (196)
T 3llu_A 98 ALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA-G---LEKLHLS 173 (196)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT-T---CTTSCEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh-h---hhcCCcc
Confidence 9999999998643444444444443 37899999999998752210 00111111111000000 0 0011246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++.+||++ .|++++++.+...
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHHH
Confidence 78899999 9999999988753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-14 Score=144.49 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=114.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--hc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--VL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~a 74 (1043)
+|+.++ |..++||+|.......+....+..||+|++.....+.+++..+.+|||||+.++. ..+..+++ .+
T Consensus 8 ~~i~lv-G~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 2wjg_A 8 YEIALI-GNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 86 (188)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCC
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCC
Confidence 577777 9999999999888877777788889999999889999999999999999998763 33445554 49
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++. .......+..+...++|+++|+||+|+.... .....+.+.+.++ .+++++
T Consensus 87 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 148 (188)
T 2wjg_A 87 DLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------------VKVVPL 148 (188)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEEC
T ss_pred CEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC----------------CCeEEE
Confidence 99999999874 2233334455566789999999999984311 0011223332221 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+......
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTT
T ss_pred EecCCCCHHHHHHHHHHHHHh
Confidence 999999999999999876654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=142.37 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=106.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc--CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR--GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~--G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+ |+|.......+.....++.||||||+.++...+..+++.+|++|+|
T Consensus 24 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV 102 (192)
T 2fg5_A 24 LKVCLL-GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIV 102 (192)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEE
Confidence 677788 9999999999877776665544444 4343333233223456899999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.... ..+....+.+. .. .+++++|
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~~~S 166 (192)
T 2fg5_A 103 YDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-------------IG---AIVVETS 166 (192)
T ss_dssp EETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-------------TT---CEEEECB
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 9998654333322 2222333 378999999999986321 11111222111 11 3678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=138.78 Aligned_cols=154 Identities=18% Similarity=0.034 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+....+.....+...+ .++.+|||||+.++...+..+++.+|++++|
T Consensus 7 ~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (170)
T 1z0j_A 7 LKVCLL-GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV 85 (170)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEE
Confidence 677888 9999999999877777766555455444433334444443 6799999999999998899999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.+.. ..+....+.... ..+++++|
T Consensus 86 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~S 149 (170)
T 1z0j_A 86 YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----------------HAIFVETS 149 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TCEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc----------------CCEEEEEe
Confidence 9998654433322 2233332 357899999999986421 111122222111 13678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 150 a~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 150 AKNAININELFIEISRRIP 168 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999986553
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=137.73 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=95.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...........+..|.+.....+..++ ..+.+|||||+.++.. .+..+++.+|+++
T Consensus 2 ~~ki~iv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLV-GESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 4788888 9999999999877766666666666667777667777766 4688999999998876 5566788999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+.+.. .......+.+.+ ..+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 144 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----------------SCKHI 144 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc----------------CCcEE
Confidence 99999863222221 12222222 278999999999986321 111122222211 12568
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 899999999999999987654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-14 Score=152.86 Aligned_cols=156 Identities=14% Similarity=0.062 Sum_probs=109.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhh--hhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELE--RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e--~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...++..+.+... .++|+|+......+...+..+.||||||+.++...+..+++.+|++|+
T Consensus 15 ~~ki~v~-G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 15 QFKLVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp EEEEEEE-ECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 3688888 9999999999887676655444 455666665555544455689999999999988888899999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|+++..+......| ..+.. .++|+++|+||+|+.+.........+... ...+++.+||+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~ 157 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK----------------KNLQYYDISAK 157 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH----------------HTCEEEECBGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH----------------cCCEEEEEeCC
Confidence 9999864433332222 22222 27899999999999753221100011110 11367889999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+...+..
T Consensus 158 ~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp GTBTTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999876643
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=145.71 Aligned_cols=116 Identities=21% Similarity=0.162 Sum_probs=78.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|.+|+|||||+++|+...-.. . .....+.+...... ....+ ..+.+|||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~------------------~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt 68 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK-N------------------YNATVGAVNHPVTF-LDDQGNVIKFNVWDT 68 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC-E------------------EETTTTEEEEEEEE-EBTTSCEEEEEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC-C------------------CCCccceeeEEEEE-EeCCCcEEEEEEEec
Confidence 345789999999999999999997322110 0 00111222211111 11112 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp CSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999887778888999999999999987655554333 222 23468999999999986
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-14 Score=150.32 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=78.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|+.|+|||||+++|+..... .+....++.......+.+++ ..+.||||
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 89 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT---------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT 89 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCC---------------------CHHHHHHCCSEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999999632110 11122233333444455555 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++++|+|+.+.........|. .+.. .++|+++|+||+|+..
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 999999888888889999999999999865444433332 2322 2789999999999863
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-14 Score=153.80 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred CCCCcc-hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~~-~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
.|||.. ....+...+..+|++++|+|++++.......+. ++ ++|.++|+||+|+.+. . ..+.+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~--~-~~~~~~~~~~---- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE--K-TTKKWVEFFK---- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH--H-HHHHHHHHHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH--H-HHHHHHHHHH----
Confidence 489874 567889999999999999999977665433222 22 8999999999999752 1 1222222221
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
. .. .++ .+||+++.|+++|++.+...+ .+++++|.+|+|||||
T Consensus 73 ~--------~g-~~v-~iSa~~~~gi~~L~~~l~~~~---------------------------~~v~~vG~~~vGKSsl 115 (262)
T 3cnl_A 73 K--------QG-KRV-ITTHKGEPRKVLLKKLSFDRL---------------------------ARVLIVGVPNTGKSTI 115 (262)
T ss_dssp H--------TT-CCE-EECCTTSCHHHHHHHHCCCTT---------------------------CEEEEEESTTSSHHHH
T ss_pred H--------cC-CeE-EEECCCCcCHHHHHHHHHHhh---------------------------hheEEeCCCCCCHHHH
Confidence 0 01 245 799999999998887664221 5699999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+|+..... . .....|+|....... -+..+.+|||||..+.
T Consensus 116 in~l~~~~~~--~------------------~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 116 INKLKGKRAS--S------------------VGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHTTCC------------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred HHHHhccccc--c------------------cCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 9999743211 0 112345555443222 2457899999997654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=143.32 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=76.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...-. . ++. ...+... ...+.++ ...+.+|||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~--------------~~~---~t~~~~~---~~~~~~~~~~~~~~i~Dt 64 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--T--------------DYI---PTVFDNF---SANVAVDGQIVNLGLWDT 64 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--S--------------SCC---CSSCCCE---EEEEECSSCEEEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--c--------------cCC---CccceeE---EEEEEECCEEEEEEEEEC
Confidence 34578999999999999999999733210 0 000 0011111 1122333 368999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 999999888888899999999999998754433332 23 333332 889999999999753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=140.29 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=78.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|.+|+|||||+++|+...-... ...++.......+.+++ ..+.+||
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~~~~i~D 77 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----------------------YVPTVFENFSHVMKYKNEEFILHLWD 77 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------------CCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----------------------cCCeeeeeeEEEEEECCEEEEEEEEE
Confidence 34567899999999999999999974321000 00011111111233333 5679999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
|||+.+|......+++.+|++++|+|+.+....... ..| ..+.. .++|+++|+||+|+..
T Consensus 78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999988888889999999999999976444332 223 22222 3689999999999864
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=160.29 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=116.6
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc-chH--------HHHHHHhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV-DFT--------VEVERALR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-~~~--------~~~~~~~~ 72 (1043)
+|+.++ |..++||+|...+.+.... .....||+|+++....+.+++..+.||||||+. ++. ..+..+++
T Consensus 244 ~kV~iv-G~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIV-GKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEE-CCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEE-CcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 678888 9999999999766665543 356789999999999999999999999999998 542 44677899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|++++...++..++..+ .++|+++|+||+|+..... .+.+.+.+. . ..++++
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~~~~~~~-----------~---~~~~i~ 383 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEEIKNKLG-----------T---DRHMVK 383 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHHHHHHHT-----------C---STTEEE
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHHHHHHhc-----------C---CCcEEE
Confidence 99999999999987777776666655 4789999999999975311 122222110 0 135689
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++|++.+...+
T Consensus 384 iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-14 Score=145.54 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=103.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~v~-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 26 FKFLVI-GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 677888 9999999999888888888777788877777777777776 6899999999998888888899999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++........ .+..+. ..++|+++|+||+|+... ...+. ..+... . ..+++++
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~-------------~---~~~~~~~ 167 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQE-------------N---ELMFLET 167 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHH-------------c---CCEEEEE
Confidence 9998643322222 222222 247899999999998532 11111 111111 1 1367889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 168 SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=140.08 Aligned_cols=113 Identities=14% Similarity=0.034 Sum_probs=76.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+....... + ....+.+.. ..+..++ ..+.+|||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV----------------Y---VPTVFENYV---ADIEVDGKQVELALWDTAG 82 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------CCEEE---EEEEETTEEEEEEEEECTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc----------------C---CCcccceEE---EEEEECCEEEEEEEEECCC
Confidence 46899999999999999999974321100 0 001111111 1233343 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH--HHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+......... ..+..+... ++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 999988777888999999999999874332222 223333333 899999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=138.07 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=105.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++ +.....+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 3 EYKVVVL-GSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3688888 9999999999777666665544444333 333445555554 59999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HH----HHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VN----RQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~----~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++........ .+ ......++|+++|+||+|+.... .......+...+ ..++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW----------------GCPFME 144 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TSCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh----------------CCCEEE
Confidence 99998643322211 12 22223478999999999985421 111112222211 125788
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-14 Score=155.24 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=118.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHh--hh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERAL--RV 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~--~~ 73 (1043)
.+|+.++ |..++||||...+.+.........||+|++.....+.+++..+.+|||||+.++.. .+..++ ..
T Consensus 3 ~~~i~lv-G~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALV-GNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEE-ECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3677777 99999999998888888777888999999999999999999999999999987554 344455 67
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcC-CCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~-~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|++++|+|++.. ......+.++...+ +|+++|+||+|+.... .......+.+.++ .+++
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----------------VPVI 143 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------SCEE
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------CcEE
Confidence 9999999999863 44555566666777 9999999999974210 0001233433331 3678
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+.....
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999986643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=142.83 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=60.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINII 272 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~li 272 (1043)
....+|+++|+.|+|||||+++|+........ +....+..+.....+.++ ...+.+|
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~ 78 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK-------------------DYAMTSGVEVVVAPVTIPDTTVSVELFLL 78 (208)
T ss_dssp EEEEEEEEC-----------------------------------------------------CEEEECTTSSEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC-------------------CCCCccceEEEEEEEEECCcccEEEEEEE
Confidence 45578999999999999999999743111100 001111112223334455 4589999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~~ 333 (1043)
||||+.+|......+++.+|++++|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999999888888888999999999999876543333333 33332 4789999999999763
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=140.11 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC-----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~-----------~~~~~~~~~~ 70 (1043)
++|+.++ |..++||+|...+...+.+.....||+|++.....+ . ++.+|||||+ ..+...+..+
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 1 MATIIFA-GRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp -CEEEEE-EBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 4788888 999999999988888888888889999987765443 2 7999999994 4455555555
Q ss_pred hhh----cCEEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 71 LRV----LDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 71 ~~~----aD~iIlVvDa~~~-----------~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
++. ++++++|+|+... ...++..+...+...++|+++|+||+|+.... .+..+.+.+.++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~---- 150 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFE---- 150 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHT----
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhh----
Confidence 554 5677777776521 11122334445556789999999999997533 333444444432
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.. +.....+++++||++|.|++++++.+...+.
T Consensus 151 ---~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 151 ---VP--LSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp ---CC--GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---hh--hhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 10 0000135789999999999999999987654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=144.75 Aligned_cols=158 Identities=14% Similarity=0.035 Sum_probs=107.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.......+...+ ..+.||||||+.++...+..+++.+|++|
T Consensus 11 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 11 TYKICLI-GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp EEEEEEE-CCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 4688888 9999999999888877776654444444333333333322 57999999999998888888999999999
Q ss_pred EEEeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 79 LVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+|++++.+.+....| ..+ ...++|+++|+||+|+...... ..+...... . ....+++++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~----------~---~~~~~~~~~S 155 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-SKKLVMEVL----------K---GKNYEYFEIS 155 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-CHHHHHHHT----------T---TCCCEEEEEB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHH----------H---HcCCcEEEEe
Confidence 99999875443333221 222 2236899999999998643110 011111111 0 1123679999
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 156 a~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999877654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=138.96 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=107.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |+.++||+|...+...........+++|.+.....+.+++. ++.+|||||+.++.. .+..+++.+|++|
T Consensus 23 ~~ki~vv-G~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 23 IFKVMLV-GESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 4688888 99999999997776544444456677787777777777664 688999999988765 5667789999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+..... .+....+...+ . .+++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~-------------~---~~~~ 165 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-------------S---CKHI 165 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh-------------C---CEEE
Confidence 99999863322221 22222322 3789999999999964321 11112222211 1 2568
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+||++|.|++++++.+...+.
T Consensus 166 e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 166 ETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999886553
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=154.06 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+.. ..| |++.....+.+.+.++.||||||+.++...+..+++.+|++|+|+
T Consensus 165 ~~kI~iv-G~~~vGKSsLl~~l~~~~~~~-~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 165 EMRILMV-GLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHTCSSCCEE-EEE--ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred cceEEEE-CCCCccHHHHHHHHhCCCCCC-ccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 3578888 999999999977776666543 334 777777888889999999999999999988999999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++...++. .. ......+++++||+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~-------~~-~~~~~~~~~~vSAk 309 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGL-------HS-LRHRNWYIQATCAT 309 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTC-------TT-CCSSCEEEEECBTT
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhch-------hh-hhcCCCEEEEEECC
Confidence 9986444332 223333332 37899999999999764322 223322211 00 11123478899999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|+++|++.+...+.
T Consensus 310 ~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 310 SGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTBTHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999986553
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-14 Score=145.92 Aligned_cols=155 Identities=16% Similarity=0.039 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+..+.+.....+. ..+..+.||||||+.++...+..+++.+|++|+
T Consensus 23 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 23 MFKLLII-GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 4788888 9999999999877776665555444443333333333 356689999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+.... .......+...++ .+++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 165 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG----------------FDFFEA 165 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------CEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC----------------CeEEEE
Confidence 999986432222 222333333 478999999999985421 1112222222211 257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999886553
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=140.28 Aligned_cols=114 Identities=15% Similarity=0.043 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..|+|||||+++|+........ ...++... ...+.+++ ..+.+||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---------------------VPTVFENY-IADIEVDGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC---------------------CCSSCCCC-EEEEEETTEEEEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc---------------------CCcccceE-EEEEEECCEEEEEEEEECC
Confidence 3468999999999999999999743211000 00011111 11133333 588999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH--HHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+......+.. .....+... ++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred CchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 9999888777788999999999999874333322 223333333 899999999999875
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-14 Score=143.39 Aligned_cols=154 Identities=15% Similarity=0.056 Sum_probs=108.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+... ...+.||||||+.++...+..+++.+|++|+|
T Consensus 23 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 23 FKLLLI-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 677788 999999999987777777665555555544444444444 45899999999999888888899999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~S 165 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG----------------FEFFEAS 165 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------CEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC----------------CeEEEEE
Confidence 999864332222 22233333 378999999999986421 1112222222211 2678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 166 a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-14 Score=163.92 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=78.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.+++..++||||||+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI--------------------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSC--------------------CSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccc--------------------ccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 469999999999999999998543221 111345666655556778899999999999987
Q ss_pred chHHHHH--------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVER--------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~--------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+.. +++.+|++++|+|+.++...+...++..+. ..|+++|+||+|+..
T Consensus 285 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 285 TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp --------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 6654433 457899999999999998888877777664 379999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=139.23 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=106.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.. ..++++.+.....+..++. .+.||||||+.++...+..+++.+|++++
T Consensus 4 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 4 EYKLVVV-GADGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCC-CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHhCCCCC-CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4688888 999999999976666555433 3344555555556666665 47889999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.... ..+....+...++ .+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 145 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG----------------IPFIET 145 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT----------------CCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC----------------CeEEEE
Confidence 99998643322222 122222 2478999999999997532 2222333333221 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=134.65 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=73.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|..|+|||||+++|+...-.. .+.+ |.......+.+++ ..+.+||
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----------------~~~~-------t~~~~~~~~~~~~~~~~l~i~D 73 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----------------EESP-------EGGRFKKEIVVDGQSYLLLIRD 73 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----------------CCCT-------TCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCC-------CcceEEEEEEECCEEEEEEEEE
Confidence 3445789999999999999999997421100 0000 1111112344454 5678899
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
|||+.+|. .++.+|++++|+|+.+....+....| ..+.. .++|+++|.||+|+.
T Consensus 74 t~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 74 EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp CSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999886 77889999999999986544443333 33333 467999999999985
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=138.18 Aligned_cols=122 Identities=27% Similarity=0.367 Sum_probs=74.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC-
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV- 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~- 278 (1043)
.+|+++|++|+|||||+++|+...-. .+..+|+|..... +.+. .+.+|||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKIIE--IEWK--NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS---------------------SSSSTTCTTSCEE--EEET--TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc---------------------cCCCCCccceeEE--EecC--CEEEEECCCccc
Confidence 57999999999999999999743210 1112344443333 2333 78999999953
Q ss_pred ----------CchHHHHHHhH----hcCeEEEEEeCCCC-----------cchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 ----------DFTVEVERALR----VLDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 ----------df~~e~~~~l~----~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.|.......++ .+++++.|+|+... ...++..+...+...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 57 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 34444444444 45677777776532 122233445556667899999999999875
Q ss_pred CCHHHHHHHHHHHh
Q psy11896 334 ADPYRVINQMRQKV 347 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l 347 (1043)
.. .+..+++.+.+
T Consensus 137 ~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 137 NV-QEVINFLAEKF 149 (190)
T ss_dssp CH-HHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHh
Confidence 43 33334443333
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=141.15 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=76.8
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|+.|+|||||+++|+... .. +....++.......+.+++ ..+.+||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~~i~D 74 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YP--------------------TEYIPTAFDNFSAVVSVDGRPVRLQLCD 74 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC------------------------------CCSSEEEEEEEEETTEEEEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC--------------------CCCCCcccceeEEEEEECCEEEEEEEEE
Confidence 3456789999999999999999997432 10 0011111111122344454 4677999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
|||+.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 9999998877777889999999999998754433332 22 22332 3889999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=148.02 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=84.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+|+|+.......... + .......++++......+.+++ ..+++|||||
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~----~---------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYP----G---------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCC----C---------cccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 46899999999999999999974432221100 0 0011133444444445555555 4899999999
Q ss_pred CCCc-------hHHH-------HHHhHh-------------cCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 277 HVDF-------TVEV-------ERALRV-------------LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 277 ~~df-------~~e~-------~~~l~~-------------~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
+.++ ...+ ..+++. +|+++++++.. +++......+++.+.. ++|+++|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 8543 2222 344443 67888888665 5888999888888876 8999999999
Q ss_pred cCCCCCC-HHHHHHHHHHHh
Q psy11896 329 LDRLGAD-PYRVINQMRQKV 347 (1043)
Q Consensus 329 iD~~~~~-~~~~~~~i~~~l 347 (1043)
+|+.... .....+.+.+.+
T Consensus 154 ~D~~~~~e~~~~~~~i~~~l 173 (274)
T 3t5d_A 154 ADTLTPEECQQFKKQIMKEI 173 (274)
T ss_dssp GGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 9987432 223334455544
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=135.80 Aligned_cols=114 Identities=21% Similarity=0.134 Sum_probs=74.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-... + ....+... .....+......+.+|||||+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 86 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------Y---DPTLESTY-RHQATIDDEVVSMEILDTAGQ 86 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC----------------C---CTTCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------c---CCCCCceE-EEEEEECCEEEEEEEEECCCC
Confidence 346899999999999999999974321100 0 00111111 111122223467999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+ .......++.+|++++|+|+.+........ .+..+ ...++|+++|+||+|+.
T Consensus 87 ~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 87 ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 88 666778889999999999998643222111 12222 23588999999999975
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-14 Score=145.70 Aligned_cols=157 Identities=16% Similarity=0.038 Sum_probs=113.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 8 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 8 LLKVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 3677788 9999999999888777777777777777777766666655 579999999999888888888999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH-h------cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK-R------YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~-~------~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|++++........| ..+. . .++|+++|+||+|+..... .+....+... ....++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~ 151 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---------------KNNIPY 151 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------TTSCCE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------cCCceE
Confidence 9999864332222211 1121 1 4789999999999974321 1111121110 112357
Q ss_pred eeeeecccCCcchHHHHHHhhccc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+++||++|.|++++++.+...+..
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999876643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=136.63 Aligned_cols=154 Identities=16% Similarity=0.051 Sum_probs=104.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.+.. .....+..+ +.++.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~ki~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 3 EYKLVVL-GSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCccc-eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3688888 99999999997777666655544443332 222333443 3479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+... ...+..+. ..++|+++|+||+|+.+... .+....+.+. ....++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 145 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---------------WCNCAFLE 145 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH---------------TTSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH---------------ccCCcEEE
Confidence 999986322222 11222222 24789999999999864211 1111222211 11246789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987643
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=158.80 Aligned_cols=161 Identities=20% Similarity=0.153 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChh---------------hhhhcCCccccceEEE-----EecCeeEEEEeCCCCc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME---------------LERQRGITIQSAATYT-----LWKDHNINIIDTPGHV 61 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~---------------~e~~~G~T~~~~~~~~-----~~~~~~i~liDTPG~~ 61 (1043)
.+|+.++ |..++||+|...+.+..... .+...+.+.+...... .....+++|||||||.
T Consensus 8 ~~~I~vv-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 8 EVNIGVV-GHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4677888 99999999985554432111 0111111111110000 1112689999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHHHHhhhhcccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~ 138 (1043)
+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+ .....+++.+.+. .
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~----~-- 160 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK----G-- 160 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH----h--
Confidence 99999999999999999999999887 7888888887777665 899999999997532 1222333333221 1
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 161 ----~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 ----TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp ----STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ----hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1123457899999999999999999987654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=137.54 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=63.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+...-. . ....++.......+.+++ ..+.||||||
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP--E--------------------SYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-----------------------------CCCCCEEEEEEEEETTEEEEEEEEEC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--C--------------------CCCCccceeEEEEEEECCEEEEEEEEECCC
Confidence 468999999999999999999732110 0 000111111112233333 4799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred chhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 9999888888899999999999998754433332 22 22222 3789999999999874
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-14 Score=148.06 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=106.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 14 ~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 14 FKIVLI-GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 678888 9999999999888888887777778777777777777776 5899999999999888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+.... .......+... . ..+++++|
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~---~~~~~~~S 156 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-------------N---QLLFTETS 156 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEECC
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 99986544333222 223332 368999999999986421 11111122111 1 13568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 157 a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=142.10 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=105.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 19 ~ki~v~-G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 19 LKCVVV-GDGAVGKTCLLMSYANDAFPEEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSSCCCSCCC-SSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 577787 9999999999777776655544333 33333344556655 5799999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.......+.. ..+. ......+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 172 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK--TLARLNDMKEKPICVEQGQKLA--KEIGACCYVEC 172 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH--HHHHHTTTTCCCCCHHHHHHHH--HHHTCSCEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc--chhhcccccCcccCHHHHHHHH--HHcCCcEEEEe
Confidence 999864333322 223344443 789999999999975311 101100000000000 0000 00112356889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 173 Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999988754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=138.59 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.......+.+++ ..+.||||||+.++...+..+++.+|++++
T Consensus 9 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 9 THKLVVV-GGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHSSCCSSCCT-TCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCccccCC-CcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 3677788 9999999999777666655444433 33333335566665 478999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHH----HHHHhcCCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN----RQMKRYDVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~----~~l~~~~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++....... ..+ ......++|+++|+||+|+.... . ......+... . ..++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~---~~~~~~ 150 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-------------H---HVAYFE 150 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-------------c---CCeEEE
Confidence 9999863322221 111 22223478999999999986421 1 1111222111 1 136788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 151 ~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999886654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=151.93 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=81.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG 276 (1043)
.+.+|+++|.+|+|||||+++|+.....+ .....+|.......+.+.+ ..+.|+||||
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~i---------------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG 215 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPKI---------------------ADYHFTTLVPNLGMVETDDGRSFVMADLPG 215 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCEE---------------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHH
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCcc---------------------ccCCccccCceEEEEEeCCCceEEEecCCC
Confidence 35689999999999999999997442211 1133456666666677765 7899999999
Q ss_pred CCC-------chHHHHHHhHhcCeEEEEEeCCCC---cc-hHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 277 HVD-------FTVEVERALRVLDGAILVLCAVGG---VQ-SQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~d-------f~~e~~~~l~~~D~~ilVvda~~g---~~-~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.+ +.....+.+..+|++|+|+|+... -. .....++..+.. .++|+++|+||+|+..
T Consensus 216 ~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 216 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred CcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 643 445566677789999999999751 12 222333344443 3789999999999863
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=133.58 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=75.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|.+|+|||||+++|+....... ...+++.......+.+++ ..+.+|||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt 79 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA---------------------HEPENPEDTYERRIMVDKEEVTLVVYDI 79 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG---------------------GTTTSCTTEEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc---------------------CCCCcccceEEEEEEECCEEEEEEEEec
Confidence 3467899999999999999999963322111 011122222222334444 56788999
Q ss_pred CCCCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
||+.+|.. ....+++.+|++|+|+|+.+.........| ..+.. .++|+++|.||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 445567899999999999864332222222 22222 4789999999999863
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=142.53 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....|.++.+.. ..+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 25 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 25 RKKLVIV-GDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 3677888 99999999998887777777666666665543 3345555 479999999999988888889999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++....... .....+... ++|+++|+||+|+..... ..+.+.+.....+.. ..+. ......++++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 178 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH--TRRELAKMKQEPVRSEEGRDMA--NRISAFGYLE 178 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH--HHHHHHTTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc--chhhhcccccCcCCHHHHHHHH--HhCCCcEEEE
Confidence 9999864332222 233334433 789999999999975321 111111100000000 0000 0112236789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 179 ~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998764
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-14 Score=168.75 Aligned_cols=170 Identities=23% Similarity=0.219 Sum_probs=116.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc-CCccccceEEEEec-----------C-------eeEEEEeCCCCcch
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR-GITIQSAATYTLWK-----------D-------HNINIIDTPGHVDF 63 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~-G~T~~~~~~~~~~~-----------~-------~~i~liDTPG~~~~ 63 (1043)
.++.++ |..++||||...+... ....+.++ |+|.+.....+.+. + ..++|||||||.+|
T Consensus 6 ~~V~Iv-Gh~d~GKTTLl~~L~~-~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVL-GHVDHGKTTLLDHIRG-SAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH-HHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEE-CCCCCcHHHHHHHHhc-ccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 466667 9999999998544432 23333444 78877666555432 1 15999999999999
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CH--------------HHHHHHHHH
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DP--------------YRVINQMRQ 128 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~--------------~~~~~~l~~ 128 (1043)
...+.++++.+|++|+|+|+++++..++.+.+..+...++|+++++||+|+... .. ....+.+.+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e 163 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHH
Confidence 988888899999999999999999999999999999999999999999999642 10 111111111
Q ss_pred h---hhhccccccccC-----C-CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 129 K---TSRWISNESLSE-----H-KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 129 ~---~~~~~~~~~l~~-----~-~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. +...+...++.. . ......+++++||++|.|+++|++.+..+++.
T Consensus 164 ~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 000010001110 0 01234588999999999999999999887764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=134.35 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=101.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+ ++.......+..++ .++.+|||||+.++...+..+++.+|++++
T Consensus 4 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 4 LHKVIMV-GSGGVGKSALTLQFMYDEFVEDYEP-TKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCccCCCCCC-CcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3678888 9999999999776666655433333 33333344455555 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.+.. .++. ..+.+.. ..+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~----------------~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRADQW----------------NVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH-HHHHHHH----------------TCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH-HHHHHHc----------------CCeEE
Confidence 99998643322221 112222 2378999999999986421 1111 1111111 13578
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 899999999999999887543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=137.47 Aligned_cols=152 Identities=14% Similarity=-0.004 Sum_probs=94.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEecC--eeEEEEeCCCCcc--hHHHHHHHhhhcCE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWKD--HNINIIDTPGHVD--FTVEVERALRVLDG 76 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~--~~~~~~~~~~~aD~ 76 (1043)
.+|+.++ |..++||+|...+...+.+... ..+|+|.. ...+.+++ .++.+|||||+.. +......+++.+|+
T Consensus 4 ~~ki~i~-G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 4 LYRVVLL-GDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred EEEEEEE-CCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4688888 9999999999777666555432 33455443 33445555 4789999999987 44555667889999
Q ss_pred EEEEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|+++..+.... ..+..+.. .++|+++|+||+|+..... ......+...+ ..+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~ 144 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF----------------DCK 144 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH----------------TSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc----------------CCe
Confidence 9999999864332222 22333433 2789999999999965321 11111111111 135
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++++||++|.|++++++.+...+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 78899999999999999987654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=146.93 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=114.5
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcC-CccccceEEEEecCeeEEEEeCCCCcch-----------HHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRG-ITIQSAATYTLWKDHNINIIDTPGHVDF-----------TVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G-~T~~~~~~~~~~~~~~i~liDTPG~~~~-----------~~~~~~ 69 (1043)
+|+.++ |..++||+|...+.+... +.....++ +|++.....+.+++.+++||||||+.++ ...+..
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 577777 999999999976666554 44445565 8999888889999999999999999764 333445
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-----CCCEEEEEe-cCCCCCCCHHHHHH--------HHHHhhhhccc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFIN-KLDRLGADPYRVIN--------QMRQKTSRWIS 135 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-----~~piilvlN-KiDl~~~~~~~~~~--------~l~~~~~~~~~ 135 (1043)
+++.+|++|+|+|++. +...+..++.++... +.|.++++| |+|+........+. .+.+.++
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~---- 176 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG---- 176 (260)
T ss_dssp HTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT----
T ss_pred cCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC----
Confidence 7788999999999985 677777777777654 678888887 99997544332211 1111111
Q ss_pred cccccCCCCcc-ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 136 NESLSEHKPIE-YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 136 ~~~l~~~~~~~-~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.... +.+ +++||++|.|++++++.+...+..
T Consensus 177 -------~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 -------GRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp -------TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 0011 222 789999999999999999887764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=134.93 Aligned_cols=151 Identities=14% Similarity=-0.009 Sum_probs=86.2
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |..++||+|...+...... .....+|+|+.. .+..+ ...+.+|||||+.++...+..+++.+|+++
T Consensus 2 ~~ki~~v-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLL-GAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------CCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE
Confidence 5789899 9999999999766654443 233456666642 23333 447999999999999989999999999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.... ..+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 141 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----------------DCKFI 141 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT----------------TCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh----------------CCcEE
Confidence 99999864332222 22233332 378999999999996432 111112222211 13678
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 142 ~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 142 ETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ECBGGGTBSHHHHHHHHHHHH
T ss_pred EeccCCCCCHHHHHHHHHHHH
Confidence 899999999999999987654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=130.33 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=71.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|.+|+|||||+++|+...-.. + ....+.+. ...+.+++ ..+.+||||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-----------------L---EKTESEQY---KKEMLVDGQTHLVLIREEA 62 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-----------------C---SSCSSSEE---EEEEEETTEEEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------c---CCCcceeE---EEEEEECCEEEEEEEEECC
Confidence 34689999999999999999997432110 0 00111111 12233333 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---h---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---R---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~---~~~p~ivviNKiD~~ 332 (1043)
|+.+ ..+++.+|++++|+|+.+.........|. ++. . .++|+++|.||+|+.
T Consensus 63 G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 63 GAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9987 35678899999999998755444444331 222 1 378999999999984
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=136.19 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=104.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.... +.++.+.....+..++ +.+.||||||+.++...+..+++.+|++++
T Consensus 18 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 18 LHKVIMV-GSGGVGKSALTLQFMYDEFVEDY-EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCCSC-CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhhCCCCCcC-CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 3678888 99999999997776666554333 3344444444455555 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+....... .++..+... . .. .+++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~----~------~~---~~~~~~S 161 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-VEEAKNRAE----Q------WN---VNYVETS 161 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC-HHHHHHHHH----H------TT---CEEEECC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHHH----H------cC---CeEEEeC
Confidence 99998643222221 112222 2378999999999986421100 111111111 0 11 3578999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 162 a~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=141.31 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.+.... ...+..++. .+.+|||||+.++...+..+++.+|++|+|
T Consensus 24 ~ki~~v-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 101 (194)
T 3reg_A 24 LKIVVV-GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC 101 (194)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence 678888 9999999999877777766554444433322 234445544 579999999999998889999999999999
Q ss_pred EeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCC----HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGAD----PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~----~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+.... . ....+.. .++|+++|+||+|+.... ..+....+.+.+ ....+++
T Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 166 (194)
T 3reg_A 102 FAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---------------GCVAYIE 166 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---------------TCSCEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---------------CCCEEEE
Confidence 999865433331 2 2223333 268999999999986421 111222222221 1223688
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 167 ASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 99999999999999988654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=137.76 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=102.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+.+.+.+..+..| |.+.....+.+++ ..+.||||||+.++. +++.+|++++
T Consensus 20 ~~ki~iv-G~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 20 ELKVGIV-GNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 4788888 9999999999877777776655444 3333335566666 467889999999876 7888999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCC----CHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGA----DPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~----~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+.+. ...+..+.. .++|+++|+||+|+... ...+....+... ....++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 156 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD---------------LKRCTY 156 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH---------------TTTCEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH---------------cCCCeE
Confidence 999987544333 222333333 36799999999998421 111112222221 112356
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||++|.|++++++.+...+
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999987654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=143.29 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=106.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+.. +++.+.....+..++. .+.||||||+.++...+..+++.+|++|+
T Consensus 30 ~~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 30 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYI-PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHSCCCC-CC-CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHhCCCCCCcC-CeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3678888 999999999986666555544433 4444544555555554 56699999999998888889999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccc---cccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNE---SLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.+.....+... .+. ......++++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 183 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 183 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh--hhhhhhccccccccHHHHHHHH--HhcCCcEEEE
Confidence 9999875444333 223334433 789999999999865321 1111111000000000 000 0122345799
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998753
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=143.55 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=85.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~ 278 (1043)
.+|+++|.+|+|||||+++|+...... .....+.|+......+.+ ++..+++|||||+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF--------------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG--------------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--------------------cccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 679999999999999999987331111 223566777776666665 67899999999998
Q ss_pred Cc-----hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HH--hcCCCeEEEEeccCCCC
Q psy11896 279 DF-----TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df-----~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~--~~~~p~ivviNKiD~~~ 333 (1043)
+| .......++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 88 4445667789999999999998765555444322 11 13789999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-13 Score=137.14 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=105.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+... .++++.+.....+.+++ ..+.||||||+.++...+..+++.+|++++|
T Consensus 15 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 92 (206)
T 2bov_A 15 HKVIMV-GSGGVGKSALTLQFMYDEFVED-YEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 92 (206)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCTT-CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhCCCCCC-CCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence 677888 9999999999776666655433 33444444445556665 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++........ .+..+. ..++|+++|+||+|+.... .++. ..+.+.. . .++++
T Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~-------------~---~~~~~ 155 (206)
T 2bov_A 93 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRAEQW-------------N---VNYVE 155 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHHH-------------T---CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHH-HHHHHHh-------------C---CeEEE
Confidence 9998643222221 112222 2378999999999986421 1111 1111111 1 25789
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=138.95 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=105.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..+ +.++.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~v~-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 26 FKVVLI-GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 677788 999999999987777666655555544444444444443 45799999999999988899999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+.... .......+... . ..+++++|
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 168 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-------------N---GLLFLETS 168 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 999864332221 22223332 368999999999986421 11111112111 1 13678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 169 a~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=135.30 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... ... + ....-|................+.||||+|+.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~--f~~--------------~---~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS--FDN--------------T---YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CC---------------------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC--CCC--------------C---cCCccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 579999999999999999997321 100 0 011111111112222222346788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|.|...........-| ..+ ...++|+++|.||+|+.
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 999999999999999999999874443333322 222 23568999999999975
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-13 Score=133.49 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=105.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.+..... ..+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVF-GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4688888 99999999998777776665554444332221 2233333 479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+.... . ......+.... ..+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~ 144 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW----------------KCAFM 144 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh----------------CCeEE
Confidence 999985432221 223333332 368999999999986421 1 11111221111 13578
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+.....
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999986553
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-13 Score=132.89 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=104.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...++..+.+..+..+ ++.+.....+..++ +.+.+|||||+.++...+..+++.+|++++|
T Consensus 4 ~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 4 YKLVVV-GAGGVGKSALTIQLIQNHFVDECDP-TIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCcCccccCC-ccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 678888 9999999999777766655443333 33333334445544 4689999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... .....+.. .++|+++|+||+|+.... .......+.+.++ .+++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 145 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG----------------IPYIETS 145 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----------------CCEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC----------------CeEEEec
Confidence 999854332222 12222222 378999999999987532 2222233322211 2578899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-13 Score=136.60 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=95.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.... .+++.+.....+..++ ..+.||||||+.++...+..+++.+|++++|
T Consensus 22 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 22 YKLVVV-GAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCcccc-CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 678888 99999999997776655544333 3344444444555555 4599999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... ...+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 163 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG----------------IPFIETS 163 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----------------CCEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC----------------CeEEEEe
Confidence 99986543333222 222222 378999999999986522 1222222222211 2578899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 164 a~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999876553
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=141.47 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=103.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....|.++.... ..+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 26 KKLVVV-GDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cEEEEE-CcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 577777 99999999998777777776665555444332 3345555 4799999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....... .....+... ++|+++|+||+|+.... ...+.+.+.....+.. ..+. ......+++++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 179 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMA--VRIQAYDYLEC 179 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHH--HhcCCCEEEEe
Confidence 999864322222 233334333 78999999999996431 1112221110000000 0000 01122367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+....
T Consensus 180 SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=132.86 Aligned_cols=149 Identities=9% Similarity=-0.021 Sum_probs=99.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+.. ..|.+. +.....+..++ .++.+|||||+.+ ..+++.+|++|+
T Consensus 7 ~~ki~~v-G~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 7 ELRLGVL-GDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp EEEEEEE-CCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 4788888 999999999987777666654 334222 22234455555 4689999999987 357889999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh------cCCCEEEEEecCCCCCC----CHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLGA----DPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~------~~~piilvlNKiDl~~~----~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
|+|+++..+......| .++.. .++|+++|+||+|+... ...+....+...+ ...
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---------------~~~ 143 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM---------------KRC 143 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH---------------SSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh---------------cCC
Confidence 9999865443333322 12322 36899999999998421 1111112221111 124
Q ss_pred eeeeeeecccCCcchHHHHHHhhcc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.+||++|.|++++++.+...+-
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHHH
Confidence 6788999999999999999876553
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-13 Score=142.93 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=105.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|.......+.+..+..| ++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 10 ~ki~i~-G~~~~GKTsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 10 IKCVTV-GDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCC-SSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCccCCC-ccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 677888 9999999999877776666544433 33333344455554 4899999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCH----------HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADP----------YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~----------~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+|+++..+.... .....+... ++|+++|+||+|+..... ......+...+ .
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~---------------~ 152 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI---------------G 152 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH---------------T
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc---------------C
Confidence 999864333322 222333333 789999999999864311 11111222111 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 153 AAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 235688999999999999999987654
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-13 Score=143.25 Aligned_cols=155 Identities=9% Similarity=-0.036 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+..+..|.+.... ...+..+ ...+.||||||+.++...+..+++.+|++|+
T Consensus 27 ~~ki~vv-G~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 27 RCKLVLV-GDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 4788888 9999999999888877777665555554433 2233333 4579999999999998888889999999999
Q ss_pred EEeCCCCCchhH-HH-HHHHHHhc--CCCEEEEEecCCCCCC--------------CHHHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQT-LT-VNRQMKRY--DVPCIAFINKLDRLGA--------------DPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~-~~~~l~~~--~~piilvlNKiDl~~~--------------~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|+++..+... .. ....+... ++|+++|+||+|+... ........+...
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 172 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ------------ 172 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH------------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH------------
Confidence 999987544333 12 22333333 7899999999999642 111111112111
Q ss_pred CCCccceeeeeeeecccCC-cchHHHHHHhhcc
Q psy11896 142 HKPIEYIRNIGISAHIDSG-KTTLTERILFYTG 173 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~l~ 173 (1043)
....+++.+||++|.| ++++++.+...+-
T Consensus 173 ---~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 173 ---LGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp ---HTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred ---cCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 1122568899999998 9999999987654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-13 Score=139.42 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=88.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.+ .+.....+..++. .+.||||||+.++...+..+++.+|++|+|
T Consensus 35 ~ki~vv-G~~~vGKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 35 VKVVLV-GDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHC-------CCCC-CEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcc-ceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 678888 999999999988777776665555433 3333344555544 799999999999998899999999999999
Q ss_pred EeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc---cccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS---NESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+..... ....+.. .++|+++|+||+|+..... ..+.+...-...+. ...+. ......+++++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 188 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS--LVNKLRRNGLEPVTYHRGQEMA--RSVGAVAYLEC 188 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch--hhhhhcccccCcccHHHHHHHH--HhcCCCEEEEe
Confidence 9998643333221 2222332 3789999999999965321 11111000000000 00000 01122367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+....
T Consensus 189 SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=133.31 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=72.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|..|+|||||+++|+...-. . ++. ...+.+. .....+......+.+|||||
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~---------------~~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-S---------------EYD---PNLEDTY-SSEETVDHQPVHLRVMDTAD 78 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-S---------------CCC---TTCCEEE-EEEEEETTEEEEEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-c---------------ccC---CCcccee-eEEEEECCEEEEEEEEECCC
Confidence 44578999999999999999999743210 0 000 0111111 11112223346788999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
+.+|.. +...++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp ---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 988865 46788999999999999864433332222 22222 489999999999975
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-13 Score=138.82 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=102.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+. +.++.+.....+..++. .+.||||||+.++...+..+++.+|++|+
T Consensus 20 ~~ki~~~-G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 20 GVKCVLV-GDGAVGKTSLVVSYTTNGYPTEY-IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCC-CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 4678888 99999999998777776655444 34444444555666664 67799999999888777888999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|+++........ ....+.. .++|+++|+||+|+..... ......+...
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 165 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE------------ 165 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh------------
Confidence 99998644333321 2223333 2789999999999864211 0001111111
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
....+++++||++|.|++++++.+...+
T Consensus 166 ---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 166 ---IKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ---HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 1223678999999999999999987654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-13 Score=137.33 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=105.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~~i~~~-G~~~~GKssl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 5 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSSCCSSCCC-CSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCCCCcCC-cccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 3677888 9999999999766665555444333 33333334445554 467799999999988888888999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+... ++|+++|+||+|+.... ...+.+.+.....+.. ..+. ......++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 158 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 158 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHHHH--HhcCCcEEEE
Confidence 99998644333322 23334333 78999999999986432 1111111100000000 0000 0012236789
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred ecCCCccCHHHHHHHHHHHHh
Confidence 999999999999999887653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=140.81 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=96.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+. +.....+..+ ...+.+|||||+.++...+..+++.+|++++
T Consensus 8 ~~ki~v~-G~~~~GKssl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 8 FIKCVTV-GDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCeee-eeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4788888 9999999999877776665544444332 2211122223 4567799999999998888889999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHH------------HHHHHHHHhhhhccccccccCCC
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPY------------RVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~------------~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
|+|+++..+..... ....+.. .++|+++|+||+|+...... .....+.+.
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------- 151 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL-------------- 151 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH--------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH--------------
Confidence 99998643333322 2233333 27899999999998643211 011111111
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
....+++++||++|.|++++++.+....
T Consensus 152 -~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 -IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp -HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1123678899999999999999987643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-13 Score=139.41 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=78.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....+|+++|..|+|||||+++|+...-.. . +. ...+.+. .....+......+.+|||||
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------~--------~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 84 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------T--------YV---PTVFENY-TACLETEEQRVELSLWDTSG 84 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--------S--------CC---CCSEEEE-EEEEEC--CEEEEEEEEECC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--------C--------cC---CeeeeeE-EEEEEECCEEEEEEEEECCC
Confidence 345789999999999999999997432110 0 00 0011111 11122334457899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++|+|+|+.+...... ...| ..+... ++|+++|.||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99998888888899999999999997544443 2333 333333 789999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-13 Score=136.82 Aligned_cols=152 Identities=17% Similarity=0.091 Sum_probs=103.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++... ...+..++ ..+.||||||+.+ ...+..+++.+|++++
T Consensus 28 ~~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 28 EVKLAIF-GRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 4678888 9999999999877777766555444433222 23344444 5799999999998 7778889999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH----hcCCCEEEEEecCCCCCC-C-HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRLGA-D-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~----~~~~piilvlNKiDl~~~-~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++...... ...+..+. ..++|+++|+||+|+... . .......+.+.+ ..++++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~ 168 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL----------------ACAFYE 168 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TSEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh----------------CCeEEE
Confidence 999986322221 11122222 257899999999998642 1 111112222211 136788
Q ss_pred eeecccC-CcchHHHHHHhhc
Q psy11896 153 ISAHIDS-GKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~-Gi~~L~~~l~~~l 172 (1043)
+||++|. |++++++.+...+
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHH
Confidence 9999999 9999999987654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=134.92 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=105.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.+.... ...+..+ ...+.||||||+.++...+..+++.+|++++
T Consensus 8 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 8 DYRVVVF-GAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4688888 9999999999777766666544444332221 1223333 3479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+..... ......+...+ . .++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~ 149 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-------------K---CAFME 149 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-------------T---CEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-------------C---CeEEE
Confidence 999985322221 122222322 3689999999999975321 11112222211 1 25688
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+......
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSS
T ss_pred EecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999876643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-13 Score=135.33 Aligned_cols=116 Identities=10% Similarity=-0.048 Sum_probs=76.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+...-.. . +. ...+... .....+......+.+|||||+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------~--------~~---~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------YV---PTVFENY-TASFEIDTQRIELSLWDTSGS 65 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------CC---CCSEEEE-EEEEECSSCEEEEEEEEECCS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CC---CccceeE-EEEEEECCEEEEEEEEECCCC
Confidence 45789999999999999999997432100 0 00 0001111 011112223467899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..| ..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 99887777788999999999999875443332 223 22322 4789999999999864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-13 Score=147.84 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=113.0
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |..++||+|+..+.+.........+.+|.+++...+.+++ ..+.||||||+.+ +...+...++.+|
T Consensus 160 ~V~lv-G~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLV-GFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEE-SSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeee-CCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 45566 9999999999776665555566778999999999998886 7899999999754 5566777788899
Q ss_pred EEEEEEeCCC---CCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVG---GVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~---~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++|+|+|+++ .-.... ..+...+.. .++|+++|+||+|+.. ..+..+.+.+.+. .
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--~~e~~~~l~~~l~-----------~--- 302 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFKEKLT-----------D--- 302 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHHHHCC-----------S---
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC--CHHHHHHHHHHhh-----------c---
Confidence 9999999975 222222 233344443 3789999999999974 2223344443321 0
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
..+++++||+++.|+++|++.+...+..
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 0357889999999999999999887754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=145.73 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=55.0
Q ss_pred cCeeEEEEcCCCCCC-------------chHHHHHHhHhcCeEEEEEeC-CCCcchHH-HHHHHHHHhcCCCeEEEEecc
Q psy11896 265 KDHNINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCA-VGGVQSQT-LTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 265 ~~~~i~liDtPG~~d-------------f~~e~~~~l~~~D~~ilVvda-~~g~~~~t-~~~~~~~~~~~~p~ivviNKi 329 (1043)
.+..+.||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 455677888999999999997 55655444 467777777899999999999
Q ss_pred CCCC
Q psy11896 330 DRLG 333 (1043)
Q Consensus 330 D~~~ 333 (1043)
|+..
T Consensus 209 Dl~~ 212 (315)
T 1jwy_B 209 DLMD 212 (315)
T ss_dssp TSSC
T ss_pred ccCC
Confidence 9874
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=145.50 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEe-cCeeEEEEeCCCCcch-----HHHHHHHhhhc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLW-KDHNINIIDTPGHVDF-----TVEVERALRVL 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~-----~~~~~~~~~~a 74 (1043)
.+|+.++ |+.++||+|.......+..+ ....+|+|++.....+.+ ++.++.+|||||+.++ ...+..+++.+
T Consensus 3 ~~KI~lv-G~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 3 GSKLLLM-GRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 3688888 99999999997776666433 446899999999988876 5779999999999988 45677788999
Q ss_pred CEEEEEEeCCCCCchhHHHHH-HHHHh-----cCCCEEEEEecCCCCCCCHHH-HHHHHHHhhhhccccccccCCCCccc
Q psy11896 75 DGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLGADPYR-VINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~-~~l~~-----~~~piilvlNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
|++|+|+|+++..+......| .++.. .++|+++|+||+|+...+... ..+...+....+... .....
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~------~g~~~ 155 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE------FGFPN 155 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT------TTCCS
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH------cCCCC
Confidence 999999999976555544332 22322 278999999999997522211 110111111111111 11113
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++ .|+.+++..+...+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHH
Confidence 5778999999 78888777766543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-12 Score=141.64 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.++.|+++|++|+|||||+++|+.... ..+...+.|.+.....+.+++..+.++||||+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~---------------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--------------------------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc---------------------cccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 466799999999999999999974321 12234566776667778888899999999997
Q ss_pred CCc--------hHHHHHHhHhcCeEEEEEeCCCCc--ch-HHHHHHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 278 VDF--------TVEVERALRVLDGAILVLCAVGGV--QS-QTLTVNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df--------~~e~~~~l~~~D~~ilVvda~~g~--~~-~t~~~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.+. ...+...+..+|.+++|+|+.+.. .. +...+...+.. .+.|+++|.||+|+..
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 432 122344568899999999998764 12 22122222322 5789999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-13 Score=139.65 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++... ...+. .....+.||||||+.++...+..+++.+|++|+
T Consensus 24 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 24 YRKVVIL-GYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred cEEEEEE-CCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 3678888 9999999999877777766655444433322 33333 345679999999999988888889999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.... .......+...+ ..++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~ 165 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW----------------GATFME 165 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh----------------CCeEEE
Confidence 99998643322222 222222 2378999999999986421 111122222221 126788
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+...+..
T Consensus 166 ~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 166 SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-13 Score=156.24 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=106.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH--------HHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~--------~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+...+.. .....+|+|++.....+.+++..+.||||||+.++... +..+++.
T Consensus 225 ~kV~iv-G~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 225 LKVAIV-GRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CEEEEE-cCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 577777 9999999998766555432 24567899999998888999999999999999765433 2335788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++.......++..+. .+|+++|+||+|+....... .+ .. . ....+++++
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~-------~~---------~~-~-~~~~~~i~i 363 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT-------SL---------EY-P-ENITQIVHT 363 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-------TC---------CC-C-TTCCCEEEE
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-------HH---------HH-h-ccCCcEEEE
Confidence 99999999999888887777766664 37999999999997532110 00 00 0 123467899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+...+.
T Consensus 364 SAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-13 Score=143.31 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=104.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 30 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 30 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 3678888 9999999999877776665544333 34343333444443 467799999999999999999999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.+...... ....+. ......++++
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 183 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 183 (204)
Confidence 9999865443332 222333333 789999999999964321 0011100000000 000011 1112236788
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 184 vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIR 201 (204)
Confidence 999999999999988764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-13 Score=143.02 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee--eEEEEecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA--ATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~~~~i~liDtP 275 (1043)
+..+|+++|.+|+|||||+++|+...-... ...++.... ..........+.+||||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE----------------------YIPTVFDNYSANVMVDGKPVNLGLWDTA 86 (204)
Confidence 456899999999999999999973211000 000111111 11122334567799999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999988888899999999999998765444332 23 333333 789999999999864
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=141.45 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=76.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+.... . .+...+.|.......+.+++..+.+|||||+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP---E------------------IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC---E------------------EECCTTCSSCEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---c------------------cCCCCCeeeceeEEEEEecCceEEEEeCCCc
Confidence 456899999999999999999974321 0 0112344444555566677889999999998
Q ss_pred CCchH--------HHHHHh-HhcCeEEEEEeCCCCc--chHH-HHHHHHHHh-c-CCCeEEEEeccCCC
Q psy11896 278 VDFTV--------EVERAL-RVLDGAILVLCAVGGV--QSQT-LTVNRQMKR-Y-DVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~--------e~~~~l-~~~D~~ilVvda~~g~--~~~t-~~~~~~~~~-~-~~p~ivviNKiD~~ 332 (1043)
.++.. ....++ ..+|++++|+|+..+. .... ...+..+.. . +.|+++|+||+|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 76431 222233 4689999999987643 3332 223333322 2 89999999999986
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=162.84 Aligned_cols=112 Identities=38% Similarity=0.505 Sum_probs=89.3
Q ss_pred ccceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEec----------------Ce
Q psy11896 3 HKVKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWK----------------DH 50 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~----------------~~ 50 (1043)
+|+.|+ |..++||||... ++.+|+.++|+++|+|+......+.|. ++
T Consensus 20 rnI~Ii-G~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 20 RNMSVI-AHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEE-CCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 466777 999999999721 266788899999999999888777775 67
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.++|||||||.+|...+..+++.+|++|+|+|++++.+.++..+|.++...++|+++|+||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 89999999999999999999999999999999999999999999988888899999999999986
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=135.36 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=76.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDt 274 (1043)
....+|+++|..|+|||||+++|+...-.. . + ...+... ....+.+ ....+.||||
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------~--------~-----~~t~~~~-~~~~~~~~~~~~~l~i~Dt 83 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------Y-----VPTVFEN-YTASFEIDTQRIELSLWDT 83 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------C-----CCCSEEE-EEEEEESSSSEEEEEEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------c-----CCcccee-EEEEEEECCEEEEEEEEeC
Confidence 345789999999999999999997432110 0 0 0000000 0112233 3468999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+......... ..| ..+.. .+.|+++|.||+|+..
T Consensus 84 ~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999887777778999999999999875433332 223 23332 4789999999999863
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=132.37 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=98.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+..+..+.+. +.....+..++ ..+.||||||+.++.. +..+++.+|++++
T Consensus 21 ~~ki~vv-G~~~vGKTsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~il 97 (187)
T 3c5c_A 21 EVNLAIL-GRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLV 97 (187)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCcHHHHHHHHHhCCCCcccCCCcc-ceeeEEEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEE
Confidence 3688888 9999999999877776665544444332 22223344443 5789999999987665 3578899999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+.... ..+....+.+.+ . .++
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~ 161 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-------------G---CLF 161 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-------------T---CEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-------------C---CcE
Confidence 99998643332222 2222222 478999999999985421 111112222221 1 256
Q ss_pred eeeee-cccCCcchHHHHHHhhc
Q psy11896 151 IGISA-HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa-~~g~Gi~~L~~~l~~~l 172 (1043)
+.+|| ++|.|++++++.+...+
T Consensus 162 ~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 162 FEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp EECCSSSCSHHHHHHHHHHHHHH
T ss_pred EEEeecCccccHHHHHHHHHHHH
Confidence 88999 89999999999987643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-13 Score=134.79 Aligned_cols=164 Identities=9% Similarity=-0.022 Sum_probs=103.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+.... ...+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 7 ~~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 7 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 4678888 9999999999877777766655555443322 23344443 579999999999988888888999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... ..| ..+.. .++|+++|+||+|+.... . ....+.......+.. ..+. ......+++.
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e 160 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-S-TLVELSNHRQTPVSYDQGANMA--KQIGAATYIE 160 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-H-HHHHHHTTTCCCCCHHHHHHHH--HHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch-h-hHhhhhhcccCCCCHHHHHHHH--HHcCCcEEEE
Confidence 9999864333332 222 23333 378999999999996421 0 011110000000000 0000 0011236788
Q ss_pred eeec-ccCCcchHHHHHHhh
Q psy11896 153 ISAH-IDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~ 171 (1043)
+||+ +|.|++++++.+...
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHH
Confidence 9999 699999999988754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=140.52 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=83.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCcee-------eeee---cC-----------Cccccccccchh----hh----
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISE-------MHEV---RG-----------KDNVGAVMDSME----LE---- 248 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~-------~~~v---~~-----------~~~~~~~~d~~~----~e---- 248 (1043)
...+|+++|.+|+|||||+++|+........ .+.+ .. |.. +++... .+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~---~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKK---FTDFEEVRLEIEAETD 101 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCC---BCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcc---cCCHHHHHHHHHHHHH
Confidence 3468999999999999999999865432100 0000 00 000 011110 00
Q ss_pred h----hcCceEeeeeEEEEec-CeeEEEEcCCCCCC-------------chHHHHHHhHhcCeEE-EEEeCCCCcchHHH
Q psy11896 249 R----QRGITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERALRVLDGAI-LVLCAVGGVQSQTL 309 (1043)
Q Consensus 249 ~----~~giTi~~~~~~~~~~-~~~i~liDtPG~~d-------------f~~e~~~~l~~~D~~i-lVvda~~g~~~~t~ 309 (1043)
. ..|++.......+... ...+.||||||+.+ +...+..+++.+|.++ +|+|+..+...+..
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 1 1333333333333333 47899999999742 3445667788888777 69999988877764
Q ss_pred -HHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 310 -TVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 310 -~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+++.+...+.|+++|+||+|+..
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHHHhCCCCCeEEEEEEccccCC
Confidence 466777677899999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-12 Score=137.30 Aligned_cols=164 Identities=9% Similarity=-0.015 Sum_probs=104.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+.... ...+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 28 ~~ki~vv-G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 28 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 3688888 9999999999887777777655555443332 23344443 579999999999988888888999999999
Q ss_pred EEeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... . ....+.. .++|+++|+||+|+.... . ....+.......+.. ..+. ......+++.
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e 181 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-S-TLVELSNHRQTPVSYDQGANMA--KQIGAATYIE 181 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-H-HHHHHHTTTCCCCCHHHHHHHH--HHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-h-hhhhhcccccCCCCHHHHHHHH--HHcCCCEEEE
Confidence 9999864333322 1 2233333 378999999999996421 0 001110000000000 0000 0011236788
Q ss_pred eeec-ccCCcchHHHHHHhh
Q psy11896 153 ISAH-IDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~ 171 (1043)
+||+ +|.|++++++.+...
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHH
Confidence 9999 689999999988754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-12 Score=141.27 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=78.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++++...-.. ...+++.......+..++. .+.+|||||
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 212 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPG----------------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC----------------------SCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCc----------------------ccCCcccceeEEEEEECCEEEEEEEEeCCC
Confidence 4689999999999999999997321100 0111222222223344444 566999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 213 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred chhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 9999887778889999999999999865444432 22 333333 889999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=134.22 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....++|.......+.+++..++||||||+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~ 95 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSC--------------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcc--------------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence 4789999999999999999998532211 12245567777777788999999999999998
Q ss_pred CchHHH---HHHhH------hcCeEEEEEeCCC-CcchHHHHHHHHHHhc-C----CCeEEEEeccCCC
Q psy11896 279 DFTVEV---ERALR------VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~---~~~l~------~~D~~ilVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~ 332 (1043)
+|.... .+.+. .+|++++|+|... .........++.+... + .|+++|+||+|+.
T Consensus 96 ~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 96 EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 875432 22222 7899999987764 3444444555544432 2 4899999999985
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-12 Score=139.73 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESL 139 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l 139 (1043)
++......+++++|++++|+|++++. +... ...+..+...++|+++|+||+|+.+.......+.+.+.+. .
T Consensus 68 r~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~----~--- 140 (302)
T 2yv5_A 68 RKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYR----D--- 140 (302)
T ss_dssp CSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHH----H---
T ss_pred hHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHH----H---
Confidence 33333445799999999999998653 4332 2233445567899999999999974211011222222211 0
Q ss_pred cCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHH
Q psy11896 140 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERI 219 (1043)
Q Consensus 140 ~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~L 219 (1043)
.. .+++++||++|.|+++|++.+.. ..++++|+.|+|||||++.|
T Consensus 141 -----~g-~~~~~~SA~~g~gi~~L~~~l~G-----------------------------~i~~l~G~sG~GKSTLln~l 185 (302)
T 2yv5_A 141 -----AG-YDVLKVSAKTGEGIDELVDYLEG-----------------------------FICILAGPSGVGKSSILSRL 185 (302)
T ss_dssp -----TT-CEEEECCTTTCTTHHHHHHHTTT-----------------------------CEEEEECSTTSSHHHHHHHH
T ss_pred -----CC-CeEEEEECCCCCCHHHHHhhccC-----------------------------cEEEEECCCCCCHHHHHHHH
Confidence 11 26789999999999999876531 34899999999999999999
Q ss_pred h
Q psy11896 220 L 220 (1043)
Q Consensus 220 l 220 (1043)
+
T Consensus 186 ~ 186 (302)
T 2yv5_A 186 T 186 (302)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=130.21 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=98.4
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCe--eEEEEeCCCCcc-hHHHHHHHhhhcCEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDH--NINIIDTPGHVD-FTVEVERALRVLDGA 77 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-~~~~~~~~~~~aD~i 77 (1043)
.+|+.++ |+.++||+|...+++.... ..+..+.++.+.....+.+++. ++.+|||+|+.. +......+++.+|++
T Consensus 37 ~~kVvlv-G~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 37 YYRVVLI-GEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 3788888 9999999998766653222 1122344555555555666665 578999999987 333344456789999
Q ss_pred EEEEeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCC-CH-HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 78 ILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGA-DP-YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 78 IlVvDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~-~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+|.++..+..... .+..+.. .++|+++|+||+|+... .. ......+...+ ..++
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~----------------~~~~ 179 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF----------------DCKF 179 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc----------------CCEE
Confidence 9999998643322222 2223332 37899999999998632 11 11111111111 1256
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||++|.|++++++.+...+
T Consensus 180 ~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 180 IETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=126.52 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|.+|+|||||+++++.....+.. ++ ...|.+... ..+.+++ ..+.+|||+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~--------------~~----~~~g~d~~~--~~i~~~~~~~~l~~~Dt~ 95 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DC----EVLGEDTYE--RTLMVDGESATIILLDMW 95 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCC--------------C-------CCTTEEE--EEEEETTEEEEEEEECCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------cC----CccceeeEE--EEEEECCeeeEEEEeecC
Confidence 4578999999999999999999743222111 00 011222111 2234444 456789999
Q ss_pred CCCCc-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 276 GHVDF-TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
|.... ........+.+|++|+|+|..+.-.-.....| ..+.. .++|+++|.||+|+.
T Consensus 96 g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 98763 22222234778999999999863322222222 22322 378999999999985
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=135.60 Aligned_cols=156 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred ccceeeeeecccccccCCcc-ccCCChhhhh-------hcCCccccceEEEEecCe--eEEEEeCCCCcc-------hHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-AVMDSMELER-------QRGITIQSAATYTLWKDH--NINIIDTPGHVD-------FTV 65 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-~~~d~~~~e~-------~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-------~~~ 65 (1043)
||+.++ |..++||+|+..+ +..+.+..+. .++++++.....+..++. +++||||||+.+ +..
T Consensus 9 ~~I~vv-G~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEE-CCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 677788 9999999999766 3444444443 555666665555555553 899999999942 222
Q ss_pred HH-------HHHhhh-------------cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHH
Q psy11896 66 EV-------ERALRV-------------LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVI 123 (1043)
Q Consensus 66 ~~-------~~~~~~-------------aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~ 123 (1043)
.+ ..+++. +|++++++|.+ .++...+..+++.+.. ++|+|+|+||+|+.... .....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 22 445554 77899988765 4778888888888877 89999999999986422 22222
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+.+.+. . ...+++++||.++.|++++++.+...++
T Consensus 167 ~~i~~~l~----~---------~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 167 KQIMKEIQ----E---------HKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHH----H---------TTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHH----H---------cCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33333221 1 1134677999999999999999886654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=135.88 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred cceeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEecCeeEEEEeCCCCcchHH---HHHHHhhhcCEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV---EVERALRVLDGAIL 79 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~---~~~~~~~~aD~iIl 79 (1043)
|++++ |++++||||.......+..+.+ ...+.|+......+. ...++.||||||+++|.. .+..++++++++|+
T Consensus 1 KIvll-GdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLM-GVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEE-CSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEE-CCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 67777 9999999999754333333322 234667776666552 347899999999999864 46789999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH---H--hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM---K--RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l---~--~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++. .......| .++ . ..++|+++++||+|+...+. ......+....+..+...++ ... ....+.
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~-~~~---~i~f~e 153 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL-DGV---QVSFYL 153 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC-SCC---CEEEEC
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc-ccc---CceEEE
Confidence 9999976 32322222 222 2 24789999999999975321 11112222222111111000 001 235577
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++ .++.+.+..++..+-
T Consensus 154 TSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSS
T ss_pred eccCC-CcHHHHHHHHHHHHH
Confidence 99997 589999888875543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-12 Score=130.09 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=98.3
Q ss_pred CccceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEe-----cCeeEEEEeCCCCcchHHHHHHHhhhc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVL 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~-----~~~~i~liDTPG~~~~~~~~~~~~~~a 74 (1043)
.+|+.++ |++++||+|........ .+..+..+.++++.....+.. ....+.+|||||+.++...+..+++.+
T Consensus 2 ~~kv~iv-G~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 2 RMKLMIV-GNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 5789999 99999999997666653 333334454444443333322 356899999999998887778889999
Q ss_pred CEEEEEEeCCCCCc-hhHH-HHHHHHHh--cCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcc-ce
Q psy11896 75 DGAILVLCAVGGVQ-SQTL-TVNRQMKR--YDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIE-YI 148 (1043)
Q Consensus 75 D~iIlVvDa~~~~~-~~~~-~~~~~l~~--~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~-~~ 148 (1043)
|++++|+|.+++.. .... ..+..+.. .+.|+++|+||+|+...... .......+.+ ....... ..
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 151 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL---------LNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT---------TTCTTSCEEE
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHH---------HHhcCCcchh
Confidence 99999999886421 1111 11122222 37899999999999642111 0111111221 1111111 12
Q ss_pred eeeeeeecccC-CcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDS-GKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~-Gi~~L~~~l~~~l~~ 174 (1043)
+++.+||++|. |+++|++.+...+..
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred heEEEecccCchhHHHHHHHHHHHHhc
Confidence 46889999996 999999998876543
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-11 Score=128.76 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=80.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....++|.......+.+++..+++|||||+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVS--------------------ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSC--------------------CCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc--------------------ccCCCCcceeeEEEEEeeCCeEEEEEECCCCC
Confidence 4689999999999999999998432111 11134455555566677889999999999997
Q ss_pred Cch---HHHHHHh------HhcCeEEEEEeCCC-CcchHHHHHHHHHHhc-C----CCeEEEEeccCCCC
Q psy11896 279 DFT---VEVERAL------RVLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~---~e~~~~l------~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 333 (1043)
+|. ......+ +.+|++++|+|... .........++.+... + .|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 99 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 764 2333332 26899999988754 4444454555554332 3 69999999999864
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=136.59 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=102.1
Q ss_pred cc-ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-----h---HHHHHHHhhh
Q psy11896 3 HK-VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-----F---TVEVERALRV 73 (1043)
Q Consensus 3 ~k-~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-----~---~~~~~~~~~~ 73 (1043)
++ +.++ |..++||+|.....+......+..+++|+++....+.+++..+.+|||||+.. + ...+...+..
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY 257 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHh
Confidence 45 4455 99999999998777777767778899999999999999999999999999832 1 2234556789
Q ss_pred cCEEEEEEeCCCCC--chhH-HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 74 LDGAILVLCAVGGV--QSQT-LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 74 aD~iIlVvDa~~~~--~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|++++|+|+++.. .... ......+.. .++|+++|.||+|+.+.......+.+...... + ....
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~------l----~~~~ 327 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE------L----YSPI 327 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH------H----CSCE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH------h----cCCC
Confidence 99999999998653 1111 112223333 46899999999999764432222222111000 0 0112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|+++|++.+...+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 35689999999999999999987654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-11 Score=122.96 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=73.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.-.+|+++|++|+|||||+++|+.... .. ......|.|..... +.+++ .+.++||||+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~------------------~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~ 82 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LA------------------RTSKTPGRTQLINL--FEVAD-GKRLVDLPGY 82 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC--------------------------------CCEEE--EEEET-TEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cc------------------cccCCCccceeeEE--EEecC-CEEEEECcCC
Confidence 346799999999999999999963320 00 01123344443222 33344 6889999998
Q ss_pred CCc----------hHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDF----------TVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df----------~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.++ ...+...+ +.+|++++++|+..+.......+...+...++|.+++.||+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 83 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 542 22222333 57899999999998877666666677777899999999999976
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=136.13 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=79.9
Q ss_pred CeeEEEEeCCCCc-------------chHHHHHHHhhhcCEEE-EEEeCCCCCchhHH-HHHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHV-------------DFTVEVERALRVLDGAI-LVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~-------------~~~~~~~~~~~~aD~iI-lVvDa~~~~~~~~~-~~~~~l~~~~~piilvlNKiD 113 (1043)
..++.||||||+. .+...+..+++.++.+| +|+|++.+...++. .++..+...++|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999974 35566778888888776 79999987776664 466666667899999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+...... ..+.++..+ . .....+.+++++||++|.|+++|++.+...
T Consensus 204 l~~~~~~-~~~~~~~~~---------~-~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 204 LMDEGTD-ARDVLENKL---------L-PLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GSCTTCC-CHHHHTTCS---------S-CCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cCCCCch-HHHHHhCCc---------C-cCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9753221 112221110 0 011235678999999999999999998763
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=139.33 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=106.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCee--EEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|.......+.+..+ ..+++.+.....+..++.. +.||||||+.++...+..+++.+|++++
T Consensus 155 ~~~i~i~-G~~~~GKssli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 155 LIKCVVV-GDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHSCCCCS-CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred eeEEEEE-CCCCCChHHHHHHHHhCCCCcc-cCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 3677777 9999999999766665555433 3445555555566666654 5599999999998888889999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+... ++|+++|+||+|+..... ..+.+.......+.. ..+. ......++++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 308 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 308 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc--hhhhccccccccccHHHHHHHH--HHcCCcEEEE
Confidence 99998654433322 22333333 789999999999864211 111111100000000 0000 0012236789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 309 ~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 309 CSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999887643
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=126.49 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=70.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE---EecCeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT---LWKDHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDtPG 276 (1043)
.+|+++|.+|+|||||+++|+........ . .....|+......... ..+...+.+|||||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~------~-----------~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G 65 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG------M-----------QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG 65 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC----------------------------CSEEEEEEEC---------CEEEEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC------C-----------cceeccEEeEEeeeccccCCCCceEEEEEecCC
Confidence 47999999999999999999743111100 0 0011121111111111 11456899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|..++.. -.....| ..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 66 REEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 88777666677888999999999987632 2222222 22222 3789999999999863
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=148.04 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee------e--EEEEecCeeE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA------A--TYTLWKDHNI 269 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~------~--~~~~~~~~~i 269 (1043)
+..+|+++|.+|+|||||+++|+...-... .....|.++... . .....++..+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-------------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPK-------------------ESQTHGLNVVTKQAPNIKGLENDDELKECLF 100 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------------------------CCCEEEEEGGGSGGGTTCSTTTTCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------CCCccceEEEEeccccccceeecCCCceEEE
Confidence 457899999999999999999984321100 001111111110 0 0011235789
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
++|||||+..|.......++.+|++|+|+|+... ......+..+... +.|+++|+||+|+..
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 9999999999888777888999999999999864 3344445555554 489999999999863
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=120.22 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=68.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++|+.....+.. ++ ...|.+... ..+.+++. .+.+|||+|
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--------------~~----~~~~~~~~~--~~~~~~~~~~~l~~~Dt~~ 65 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DX----EVLGEDTYE--RTLMVDGESATIILLDMWE 65 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----------------------GGGCTTEEE--EEEEETTEEEEEEEECCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc--------------cc----cccceeEEE--EEEEECCeEEEEEEEEecc
Confidence 478999999999999999999743222111 00 011222211 22344443 567899999
Q ss_pred CCC-chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 277 HVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~d-f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
... +........+.+|++++|+|..+.........| ..+. ..++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp C----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 765 222223456789999999999864332222222 2222 2478999999999975
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=125.42 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=77.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|++|+|||||+++|+....... +.. ....++ ..+....+++|||||
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~~~--------------~~~~~~-------~~~~~~~~~l~Dt~G 64 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVS--------------QEPLSA-------ADYDGSGVTLVDFPG 64 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCC--------------SSCEEE-------TTGGGSSCEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----eee--------------cCceEE-------EEeeCceEEEEECCC
Confidence 3457899999999999999999984331110 000 000011 011567899999999
Q ss_pred CCCchHHHHHHhHh----cCeEEEEEeCC---CCcchHHHHHHHHHH------hcCCCeEEEEeccCCCCCC
Q psy11896 277 HVDFTVEVERALRV----LDGAILVLCAV---GGVQSQTLTVNRQMK------RYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 277 ~~df~~e~~~~l~~----~D~~ilVvda~---~g~~~~t~~~~~~~~------~~~~p~ivviNKiD~~~~~ 335 (1043)
+.+|...+..+++. +|++|+|+|+. +........+..... ..++|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 99998888888876 89999999998 333333333322222 1588999999999998654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=134.99 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH---------HHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT---------VEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~---------~~~~~~~~~ 73 (1043)
+++.++ |..++||+|...............+++|.+.....+...+..+.+|||||+.+.. ..+......
T Consensus 168 ~~v~lv-G~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 168 PTVVIA-GHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 456666 9999999999777776665556678999998888888888899999999986421 122223346
Q ss_pred cCEEEEEEeCCCCC--chhH-HHHHHHHHh-c-CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 74 LDGAILVLCAVGGV--QSQT-LTVNRQMKR-Y-DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 74 aD~iIlVvDa~~~~--~~~~-~~~~~~l~~-~-~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+|++++|+|++... .... ...+..+.. . ++|+++|+||+|+.... .. +...+.+. . ...
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~--~~-~~~~~~~~----~---------~~~ 310 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE--NI-KRLEKFVK----E---------KGL 310 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH--HH-HHHHHHHH----H---------TTC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH--HH-HHHHHHHH----h---------cCC
Confidence 99999999987543 3332 223333332 2 79999999999986421 11 22222111 0 113
Q ss_pred eeeeeeecccCCcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+++++||++|+|+++|++.+...+..
T Consensus 311 ~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 311 NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 56889999999999999999887754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-11 Score=123.37 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=95.8
Q ss_pred CccceeeeeecccccccCCccccC--CChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcc-hHHHHHHHhhhcCE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVM--DSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVD-FTVEVERALRVLDG 76 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~--d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-~~~~~~~~~~~aD~ 76 (1043)
.||+.++ |++++||+|....++. +.+..+ .++++.+.....+.+++. ++.+|||+|... +......+++.+|+
T Consensus 6 ~~kv~lv-G~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 6 YYRVVLI-GEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4788888 9999999998766653 222322 233555555555666665 578999999865 22234557788999
Q ss_pred EEEEEeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCCC-HH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGAD-PY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~~-~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|.++..+..... .+..+.. .++|+++|.||+|+.... .. .....+... .. .+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~-------------~~---~~ 147 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVV-------------FD---XK 147 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------------TT---CE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHH-------------hC---Cc
Confidence 99999998643323222 2222322 378999999999985321 10 000111111 11 25
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++.+||++|.|++++++.+...+
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHH
Confidence 68899999999999999988655
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=119.09 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|+.|+|||||+++|+....... ....++.......+.+++ ..+.+||||
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTA 62 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCCSCEEEEEEEEETTEEEEEEEEECS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEEEEECCEEEEEEEEECC
Confidence 357899999999999999999974321110 011111222233344555 467889999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+..|.......++.+|++++|+|............| ..+.. .+.|+++++||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9988876666777889999999999875443333223 22222 467999999999975
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-11 Score=138.57 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=71.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhccc---CCceeeeeecCCcccc---ccccch---hhhhhcCceEeeeeE--------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYT---GRISEMHEVRGKDNVG---AVMDSM---ELERQRGITIQSAAT-------- 260 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~---~~~~~~~~v~~~~~~~---~~~d~~---~~e~~~giTi~~~~~-------- 260 (1043)
+.++|+++|++|+|||||+++|.... +.---....+.+.+.. ...|.. ......+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 35789999999999999999997542 1111111111111100 000000 000111222211111
Q ss_pred --------EEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 261 --------YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 261 --------~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+.+.++.+.||||||... .....+..+|.+++|+|+..+...+... .....+|.++|+||+|+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCc
Confidence 1134678999999999654 2333458999999999988665443222 111346999999999985
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-11 Score=123.33 Aligned_cols=126 Identities=18% Similarity=0.281 Sum_probs=79.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|+.|+|||||+++|+....... + .....+++. .+.+..+.+|||||+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~--------------~~~~~~~~~-------~~~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V--------------VSQEPLSAA-------DYDGSGVTLVDFPGH 101 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------------CCCCTTCSEEEETTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc----c--------------ccCCCceee-------eecCCeEEEEECCCC
Confidence 346899999999999999999974321110 0 000111111 125678999999999
Q ss_pred CCchHHHHHHhHh----cCeEEEEEeCCCCcch-H-HHHHHHHHH-------hcCCCeEEEEeccCCCCC-CHHHHHHHH
Q psy11896 278 VDFTVEVERALRV----LDGAILVLCAVGGVQS-Q-TLTVNRQMK-------RYDVPCIAFINKLDRLGA-DPYRVINQM 343 (1043)
Q Consensus 278 ~df~~e~~~~l~~----~D~~ilVvda~~g~~~-~-t~~~~~~~~-------~~~~p~ivviNKiD~~~~-~~~~~~~~i 343 (1043)
.+|...+...++. +|++++|+|+...... . ....+.... ..++|+++|+||+|+... ...+..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9887666666655 8999999999822111 1 111121111 148999999999999754 455555555
Q ss_pred HHHhC
Q psy11896 344 RQKVG 348 (1043)
Q Consensus 344 ~~~l~ 348 (1043)
.+.++
T Consensus 182 ~~~l~ 186 (193)
T 2ged_A 182 ESEIQ 186 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=138.09 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=87.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccch-------------hhhhhcCce-----Eeee
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM-------------ELERQRGIT-----IQSA 258 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~-------------~~e~~~giT-----i~~~ 258 (1043)
+...+|+|+|++|+|||||+|+|+.........+..........+.... +.....++. ....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4568999999999999999999996543200000000000000000000 000000000 0011
Q ss_pred eEEEEecC---eeEEEEcCCCCCC-----------chHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCCCeE
Q psy11896 259 ATYTLWKD---HNINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCI 323 (1043)
Q Consensus 259 ~~~~~~~~---~~i~liDtPG~~d-----------f~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~p~i 323 (1043)
.....+.+ ..++||||||+.+ |...+..+++.+|++++|+|+.. +...+...+++.+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 12222332 4799999999876 66777888999999999999987 678888888888887889999
Q ss_pred EEEeccCCCC
Q psy11896 324 AFINKLDRLG 333 (1043)
Q Consensus 324 vviNKiD~~~ 333 (1043)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999974
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-11 Score=140.80 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=46.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-----------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL----------------- 263 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------------- 263 (1043)
+|+++|++|+|||||+|+|+..... ....+++|+........
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~---------------------~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~ 60 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVE---------------------IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEEECSCSSSCCSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCcccCCceEEEeeccCCchHHhhhhcccc
Confidence 6999999999999999999854311 11123334433332211
Q ss_pred ----ec---CeeEEEEcCCCCCCchHH-------HHHHhHhcCeEEEEEeCCCC
Q psy11896 264 ----WK---DHNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVGG 303 (1043)
Q Consensus 264 ----~~---~~~i~liDtPG~~df~~e-------~~~~l~~~D~~ilVvda~~g 303 (1043)
++ ...+.||||||+.++... ...+++.+|++++|+|+.++
T Consensus 61 ~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp SSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 357999999998764221 12346899999999999875
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=127.52 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=86.7
Q ss_pred CccceeeeeecccccccCCccccCCChhh---hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhh----c
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL---ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV----L 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~---e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~----a 74 (1043)
.+|+.++ |..++||+|...+.....+.. ...|+++.+. ....+.+|||||+.++...+..+++. +
T Consensus 12 ~~~i~~~-G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 12 QPSIIIA-GPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4677777 999999999976666555432 2334333332 56789999999999998888888887 9
Q ss_pred CEEEEEEeCC-C--CCchhHHHHHHHHHh------cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCC
Q psy11896 75 DGAILVLCAV-G--GVQSQTLTVNRQMKR------YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 75 D~iIlVvDa~-~--~~~~~~~~~~~~l~~------~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|++|+|+|++ + ........+...+.. .++|+++|+||+|+..... ....+.+.+.+..+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-------- 155 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-------- 155 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH--------
Confidence 9999999998 3 332233333333321 4789999999999976532 33334444333222111
Q ss_pred ccceeeeeeeecccCC
Q psy11896 145 IEYIRNIGISAHIDSG 160 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~G 160 (1043)
...+++.+||++|.+
T Consensus 156 -~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 -RKKSLNEVERKINEE 170 (218)
T ss_dssp -HHHHHHC--------
T ss_pred -Hhccccccccccccc
Confidence 112457799998876
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=132.52 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=75.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG 276 (1043)
....|+++|++|||||||+++|+.....+ . ....+|.......+.+.+ ..+.++||||
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i---------------~------~~~ftTl~p~~G~V~~~~~~~~~l~DtpG 214 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKI---------------A------PYPFTTLSPNLGVVEVSEEERFTLADIPG 214 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEE---------------C------CCTTCSSCCEEEEEECSSSCEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccc---------------c------CcccceecceeeEEEecCcceEEEEeccc
Confidence 34679999999999999999997543211 1 122334444445566665 7899999999
Q ss_pred CCC-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 277 HVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.+ +.....+.+..+|.++.++|+......+....+++... ...|.++++||+|...
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 865 23344555677999999999972111222222233322 3689999999999863
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-11 Score=126.70 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=80.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc--CCccccceEEEEecCeeEEEEeCCCCcc-----------hHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR--GITIQSAATYTLWKDHNINIIDTPGHVD-----------FTVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~--G~T~~~~~~~~~~~~~~i~liDTPG~~~-----------~~~~~~~ 69 (1043)
+|+.++ |..++||+|...+.+.........+ ++|++.....+.+++..+.||||||+.+ +...+..
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 677888 9999999999877776666666666 8899998889999999999999999753 4444455
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHH-----hcCCCEEEEEecCCCCC
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMK-----RYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~-----~~~~piilvlNKiDl~~ 116 (1043)
+++.+|++|+|+|++. ....+...+..+. ...+|+++|+||+|+..
T Consensus 109 ~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp TTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred cCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 5667899999999874 4444444333332 23469999999999864
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-11 Score=145.95 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceE------EEE----ecCeeEEEEeCCCCcchHHHHHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT------YTL----WKDHNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~------~~~----~~~~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
.+|+.++ |..++||||...+...+.+.....|.+..+.... .+. ..+..+.+|||||+..+......++
T Consensus 41 ~~kV~lv-G~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 41 EIKVHLI-GDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp EEEEEEE-SSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 3688888 9999999999877777766555444333332211 111 1257899999999998888788889
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.+|++|+|+|++.. .........+... ++|+++|+||+|+....... .+.+++.+. ....+
T Consensus 120 ~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~-~~~~~~~~~-------------~~~~~ 183 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE-QKKINERFP-------------AIENR 183 (535)
T ss_dssp HSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC-HHHHHHHCG-------------GGTTC
T ss_pred cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC-HHHHHHHHH-------------hcCCc
Confidence 999999999999753 3344445555554 48999999999997532110 122222221 01125
Q ss_pred eeeeeecccCCcchHHHHHHhhccc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++++||++|.|+++|++.+...+..
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 7899999999999999999876653
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-11 Score=141.25 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=90.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---------------------c---CeeEEEEeCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---------------------K---DHNINIIDTP 58 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---------------------~---~~~i~liDTP 58 (1043)
+|+.++ |..++||+|...+.+.........|++|++++.+...+ + ..++.|||||
T Consensus 1 ~kI~iv-G~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVV-GKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 477788 99999999987666655555568899999999876432 2 2579999999
Q ss_pred CCcchH-------HHHHHHhhhcCEEEEEEeCCCCCc----------h-h------------------------------
Q psy11896 59 GHVDFT-------VEVERALRVLDGAILVLCAVGGVQ----------S-Q------------------------------ 90 (1043)
Q Consensus 59 G~~~~~-------~~~~~~~~~aD~iIlVvDa~~~~~----------~-~------------------------------ 90 (1043)
|+.+.. ..+..+++.+|++++|+|++++.. + .
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~ 159 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKL 159 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTS
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 996422 223345789999999999986410 0 0
Q ss_pred ------------------------------------------H-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHH
Q psy11896 91 ------------------------------------------T-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMR 127 (1043)
Q Consensus 91 ------------------------------------------~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~ 127 (1043)
+ ..+...+....+|+++|+||+|+.. ...++.+.
T Consensus 160 ~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~---~~~l~~l~ 236 (397)
T 1wxq_A 160 QKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAAS---DEQIKRLV 236 (397)
T ss_dssp SCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSC---HHHHHHHH
T ss_pred cCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccc---hHHHHHHH
Confidence 0 1111122234689999999999862 23344444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHH-HHHhhcccccccccc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTE-RILFYTGRISEMHET 181 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~-~l~~~l~~~~~~~~~ 181 (1043)
+.+.. ...+++++||+.+.|+.+|++ .+..+++.-+.++..
T Consensus 237 ~~~~~-------------~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~ 278 (397)
T 1wxq_A 237 REEEK-------------RGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVL 278 (397)
T ss_dssp HHHHH-------------TTCEEEEECHHHHHHHHSCSSSCCCCSCC--------
T ss_pred HHHhh-------------cCCcEEEEeccchhhHHHHHhhhhhhhcCCCcccccc
Confidence 43210 013689999999999998877 777777654433333
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=7e-10 Score=114.26 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liD 273 (1043)
.+...+|+++|+.|+|||||+++|+...... .....++.......+.+++. .+.+||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~---------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~D 84 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL---------------------ESKSTIGVEFATRSIQVDGKTIKAQIWD 84 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCC---------------------SCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEE
Confidence 3456889999999999999999997432111 00112222233334555554 456799
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+...++.+|++++|+|.......+....| .... ..+.|+++++||+|+.
T Consensus 85 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999988877777778889999999998864332222222 2222 2467899999999975
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=140.13 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=54.1
Q ss_pred eeEEEEcCCCCCC---chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHhcCCCeEEEEeccCCC
Q psy11896 267 HNINIIDTPGHVD---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 267 ~~i~liDtPG~~d---f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~~~~p~ivviNKiD~~ 332 (1043)
..+.||||||+.+ +...+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999654 4455667889999999999999988877777775 4555688999999999975
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-11 Score=125.04 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeE----EE----------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT----YT----------L 263 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~----~~----------~ 263 (1043)
++++|+++|++|+|||||+++|+.......+.+.+.... ....|....+ ..|+++..... .+ .
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~--~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV--VSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC--CCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC--CCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 468899999999999999999997643322333332211 0111211111 12333111000 01 3
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+..+.+|||||..+-.... -...+.+++|+|+..+... .+......+.|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 456789999999952211100 0245789999999887432 2333344578999999999974
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.8e-11 Score=130.82 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=83.3
Q ss_pred cCeeEEEEeCCCCcc-------------hHHHHHHHhhhcCEEEEEEeC-CCCCchhH-HHHHHHHHhcCCCEEEEEecC
Q psy11896 48 KDHNINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCA-VGGVQSQT-LTVNRQMKRYDVPCIAFINKL 112 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~-------------~~~~~~~~~~~aD~iIlVvDa-~~~~~~~~-~~~~~~l~~~~~piilvlNKi 112 (1043)
.+.++.||||||+.+ +...+..+++.+|++++|+|+ +.+....+ ..++..+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 346899999999864 566788899999999999997 45555343 467777777889999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc---cCCcchHHHHHHhhccc
Q psy11896 113 DRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI---DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 113 Dl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~---g~Gi~~L~~~l~~~l~~ 174 (1043)
|+..... ...+.+...+ . .....+.++.++||.+ +.|++++++.+..+++.
T Consensus 209 Dl~~~~~-~~~~~~~~~~---------~-~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT-DAMEVLTGRV---------I-PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC-CCHHHHTTSS---------S-CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCcch-HHHHHHhCCC---------c-cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9975432 1122222111 0 1124567788889988 89999999998887764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=120.57 Aligned_cols=154 Identities=17% Similarity=0.101 Sum_probs=108.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|.........+..+..|.++.+...+.+.+++. .+.+|||||+.++...+..+++.+|++++|
T Consensus 6 ~kv~lv-G~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 6 FKVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 677888 99999999998888777777777777777777777777774 678999999998877777888999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|.++....... ..+..+.. .+.|+++++||+|+.... .......+... .. ..++.+|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------~~---~~~~d~S 148 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------NN---LSFIETS 148 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------TT---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 998864332222 12222222 367899999999985321 11111122111 11 2456799
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|+++.|++++++.+...+.
T Consensus 149 al~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887664
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-11 Score=134.27 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=91.7
Q ss_pred Cccceeeeeec---------ccccccCCccccC---CChhhhhhcCC-ccccceEE----------------EEecCeeE
Q psy11896 2 EHKVKIIHIKQ---------EQVRGKDNVGAVM---DSMELERQRGI-TIQSAATY----------------TLWKDHNI 52 (1043)
Q Consensus 2 ~~k~~i~~~~~---------~~gk~s~~~~~~~---d~~~~e~~~G~-T~~~~~~~----------------~~~~~~~i 52 (1043)
.||+.++ |+. ++||+|...+++. +.+..+..+++ +.+..... +......+
T Consensus 19 ~~ki~lv-G~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 19 TYNISVV-GLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp CEEEEEE-ESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred eeEEEEE-CCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 4788888 999 9999999877776 44555555544 33322111 12234578
Q ss_pred EEEe------CCCCcchH-----------------HHHHHHhh---------------------hcCEEEEEEeCCCC--
Q psy11896 53 NIID------TPGHVDFT-----------------VEVERALR---------------------VLDGAILVLCAVGG-- 86 (1043)
Q Consensus 53 ~liD------TPG~~~~~-----------------~~~~~~~~---------------------~aD~iIlVvDa~~~-- 86 (1043)
.||| |||...+. ..+..+++ ++|++|+|+|+++.
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 8998 55554322 22222333 69999999999875
Q ss_pred CchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 87 VQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 87 ~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
.+..... .+..+ ...++|+++|+||+|+... .. .+...+... . ....+++.+||++|.|+
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~-v~~~~~~~~----~--------~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RY-IRDAHTFAL----S--------KKNLQVVETSARSNVNV 242 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HH-HHHHHHHHH----T--------SSSCCEEECBTTTTBSH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HH-HHHHHHHHH----h--------cCCCeEEEEECCCCCCH
Confidence 3333322 12222 2357999999999998532 11 122222110 0 01235688999999999
Q ss_pred chHHHHHHhhc
Q psy11896 162 TTLTERILFYT 172 (1043)
Q Consensus 162 ~~L~~~l~~~l 172 (1043)
+++++.+...+
T Consensus 243 ~elf~~l~~~l 253 (255)
T 3c5h_A 243 DLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=131.22 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=80.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeec--CC--------ccccc--------cccchh--hh------hh--
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR--GK--------DNVGA--------VMDSME--LE------RQ-- 250 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~--~~--------~~~~~--------~~d~~~--~e------~~-- 250 (1043)
..+|+++|.+|+|||||+|+|+...-.....+.+. .+ ..+.. +.+... .+ ..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 46799999999999999999986432110000000 00 00000 011111 01 11
Q ss_pred --cCceEeeeeEEEEec-CeeEEEEcCCCCCC-------------chHHHHHHhHhcC-eEEEEEeCCCCcchHHH-HHH
Q psy11896 251 --RGITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCAVGGVQSQTL-TVN 312 (1043)
Q Consensus 251 --~giTi~~~~~~~~~~-~~~i~liDtPG~~d-------------f~~e~~~~l~~~D-~~ilVvda~~g~~~~t~-~~~ 312 (1043)
.|+........+... ...+.||||||..+ +...+..+++.++ .+++|+|+..++..+.. .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 344433333333333 57899999999643 2334455565444 55667888777766655 367
Q ss_pred HHHHhcCCCeEEEEeccCCCC
Q psy11896 313 RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 313 ~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+...+.|+++|+||+|+..
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSC
T ss_pred HHhCcCCCceEEEeccccccC
Confidence 777777899999999999874
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=139.24 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=96.4
Q ss_pred eeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeee
Q psy11896 152 GISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~ 231 (1043)
..++..+.|.++|...+......+...-.. ..-...+|+++|..++|||||+|+|+...-.....+-
T Consensus 17 ~~~~~~~~~~~~li~~inkl~d~l~~lg~~-------------~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~ 83 (772)
T 3zvr_A 17 RGSHMGNRGMEDLIPLVNRLQDAFSAIGQN-------------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 83 (772)
T ss_dssp --------CGGGHHHHHHHHHHHHHTTTCC-------------GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcCcc-------------ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc
Confidence 366788889888887776554432211000 0123568999999999999999999864321110000
Q ss_pred e----------cCCccccc--------cccchhh------------hhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC-
Q psy11896 232 V----------RGKDNVGA--------VMDSMEL------------ERQRGITIQSAATYTLWK-DHNINIIDTPGHVD- 279 (1043)
Q Consensus 232 v----------~~~~~~~~--------~~d~~~~------------e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d- 279 (1043)
+ .....+.. +.+..+. ....+++-......+.+. ...+.|+||||...
T Consensus 84 ~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~ 163 (772)
T 3zvr_A 84 VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKV 163 (772)
T ss_dssp SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCC
T ss_pred ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccC
Confidence 0 00000000 1111100 011233333333333343 45799999999654
Q ss_pred ------------chHHHHHHh-HhcCeEEEEEeCCCCcchHHH-HHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 ------------FTVEVERAL-RVLDGAILVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 ------------f~~e~~~~l-~~~D~~ilVvda~~g~~~~t~-~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|+++|+||+|+..
T Consensus 164 ~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 164 PVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCC
Confidence 112234444 578999999999998877776 678888888999999999999874
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=129.48 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=63.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+........ ..+....+..+++++......+.+.+. .+++|||||+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~------------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER------------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC------------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 57999999999999999998643211100 011111112233333333333444443 7899999999
Q ss_pred CCchH-------HHH-------HHhHhc-------------CeEEEEEeC-CCCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 278 VDFTV-------EVE-------RALRVL-------------DGAILVLCA-VGGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 278 ~df~~-------e~~-------~~l~~~-------------D~~ilVvda-~~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
.++.. .+. .+++.+ |+++++|+. ..++......+++.+ ..++|+|+|+||+
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~ 184 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKA 184 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECC
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECC
Confidence 55432 121 344333 457788876 566766666555554 4678999999999
Q ss_pred CCCC
Q psy11896 330 DRLG 333 (1043)
Q Consensus 330 D~~~ 333 (1043)
|+..
T Consensus 185 Dl~~ 188 (361)
T 2qag_A 185 DTLT 188 (361)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9874
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=126.11 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHH---HhcCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCC
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQM---KRYDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l---~~~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+.++|.+++|+|++.+..... .+-+++ ...++|.++|+||+|+.+.... ...+.+.+.+. .
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~------------~ 148 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR------------N 148 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH------------H
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH------------h
Confidence 36889999999999996555444 333333 4578999999999999753220 12233333321 0
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.. .+++.+||.++.|+++|++... -..++++|++|+|||||++.|+..
T Consensus 149 ~g-~~v~~~sa~~~~g~~~L~~~~~-----------------------------G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 149 IG-YDVYLTSSKDQDSLADIIPHFQ-----------------------------DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp HT-CCEEECCHHHHTTCTTTGGGGT-----------------------------TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CC-CeEEEEecCCCCCHHHHHhhcC-----------------------------CCEEEEECCCCCCHHHHHHHhccc
Confidence 11 3678899999999988765431 135899999999999999999743
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.7e-10 Score=114.71 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=99.2
Q ss_pred ccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc----------hHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~----------~~~~~~~~ 70 (1043)
+++.++ |..++||+|.........+ .....+|+|+.... +.+++ .+.+|||||+.. +...+..+
T Consensus 27 ~~v~lv-G~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 27 IEVAFA-GRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp EEEEEE-ECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 356666 9999999998766665542 22457788876443 33444 789999999853 22222333
Q ss_pred h---hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 71 L---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 71 ~---~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+ +.+|++++|+|++.+....+..+..++...++|++++.||+|+.+... ++..+.+...+.. . ..
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~----------~-~~ 171 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLA----------F-NG 171 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG----------G-CS
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh----------c-CC
Confidence 3 578999999999987766666667777778999999999999875321 1112333332210 0 11
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
....+|+||+++.|++++++.+.....
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 245689999999999999999887654
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-10 Score=125.69 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=87.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..+-.-+|+|+|.||+|||||+|+|+..... ....+++|++.....+.+.+.++.|+||
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~---------------------v~~~pftT~~~~~g~~~~~~~~i~l~D~ 126 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESE---------------------AAEYEFTTLVTVPGVIRYKGAKIQMLDL 126 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCCC---------------------GGGTCSSCCCEEEEEEEETTEEEEEEEC
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCCc---------------------ccCCCCceeeeeeEEEEeCCcEEEEEeC
Confidence 3344568999999999999999999744321 2346789999999999999999999999
Q ss_pred CCCCCc-------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 275 PGHVDF-------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df-------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
||..+- ...+...++.+|++++|+|+.+.+.. ...+...+.. ...|.++++||+|+.
T Consensus 127 pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 127 PGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp GGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 997652 34467778999999999999875422 2222233322 356899999999985
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=118.70 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|.++|..|+|||||+.++.... ... ....-+.|+......+. ...++++|||||+.+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~------------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPL------------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSG------------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCC------------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhc
Confidence 48899999999999998764211 000 00012233333333332 3478999999999999
Q ss_pred hH---HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HH--hcCCCeEEEEeccCCCCC
Q psy11896 281 TV---EVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~---e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~--~~~~p~ivviNKiD~~~~ 334 (1043)
.. ....+++.++++|+|+|+.+. ......-|.. +. ..++|+++|.||+|+...
T Consensus 60 ~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 60 FEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred cchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 63 457788999999999999986 3344333322 21 247899999999999753
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.6e-10 Score=136.61 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=82.0
Q ss_pred eeEEEEeCCCCcc---hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH-HHHhcCCCEEEEEecCCCCCCC---H---
Q psy11896 50 HNINIIDTPGHVD---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRYDVPCIAFINKLDRLGAD---P--- 119 (1043)
Q Consensus 50 ~~i~liDTPG~~~---~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~-~l~~~~~piilvlNKiDl~~~~---~--- 119 (1043)
..+.||||||+.+ ....+..+++.+|++|+|+|++.+....+...+. .+...++|+++|+||+|+.... .
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999875 4566778999999999999999887777776664 4555688999999999985321 1
Q ss_pred HH---HHHHHHHhhhhccccccccCCCCccceeeeeeeec--------------ccCCcchHHHHHHhhcc
Q psy11896 120 YR---VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH--------------IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 120 ~~---~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~--------------~g~Gi~~L~~~l~~~l~ 173 (1043)
+. ..+.+...+...+....-...+.....++++|||+ +|.|+++|++.+...+.
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 01 11122221111111000000011223468999999 99999999999876553
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-10 Score=115.14 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCee--EEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|.........++.+..|.++.+...+.+.+++.. +.+|||||+.++...+..+++.+|++++|
T Consensus 30 ~kv~lv-G~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 30 FKVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 677788 999999999988877777777777878877777788887764 56799999998877778888999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCC-C-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGA-D-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~-~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|..+........ .+..+. ..+.|+++++||+|+... . .......+... .. ..++.+|
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------~~---~~~ld~S 172 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------NG---LSFIETS 172 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------TT---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 9987533222211 222222 236789999999998532 1 11111222211 11 2456699
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|+++.|++++++.+...
T Consensus 173 ald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-10 Score=114.67 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=76.8
Q ss_pred CccceeeeeecccccccCCccccCCChhh---hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhh----c
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL---ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV----L 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~---e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~----a 74 (1043)
.+|+.++ |..++||+|.........+.. ...+++|.+. .+..+.+|||||+.++...+..+++. +
T Consensus 48 ~~~i~vv-G~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 48 QPSIIIA-GPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3577777 999999999977666655433 3444444432 56789999999998876666666655 8
Q ss_pred CEEEEEEeCC-CCCchhH--HHHHHHHH------hcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhh
Q psy11896 75 DGAILVLCAV-GGVQSQT--LTVNRQMK------RYDVPCIAFINKLDRLGA-DPYRVINQMRQKTS 131 (1043)
Q Consensus 75 D~iIlVvDa~-~~~~~~~--~~~~~~l~------~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~ 131 (1043)
|++|+|+|++ ....... ..+...+. ..++|+++|+||+|+... ...+..+.+.+.++
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence 9999999998 3211111 11112221 137999999999999754 45555555555443
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=124.27 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=75.8
Q ss_pred CeeEEEEeCCCCcc-------------hHHHHHHHhhhcC-EEEEEEeCCCCCchhHHH-HHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCAVGGVQSQTLT-VNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~~-------------~~~~~~~~~~~aD-~iIlVvDa~~~~~~~~~~-~~~~l~~~~~piilvlNKiD 113 (1043)
..+++||||||+.+ +...+..+++.++ ++++|+|+..++..++.. +++.+...+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999999742 4455666776554 566678887766666653 66666667899999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
+.+.... ..+.+... . ......+.+++++||++|.|+++|++.+..
T Consensus 209 l~~~~~~-~~~~~~~~---------~-~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTD-ARDVLENK---------L-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCC-CHHHHTTC---------S-SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchh-HHHHHhCC---------c-ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9753221 11111111 0 011234567899999999999999998875
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=123.09 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=39.1
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.++.+.|+||||..+.. ......+|.+++|+|+..|...+... . .-...|.++|+||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 467899999999964322 22357899999999998764322111 1 12357999999999985
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-10 Score=122.84 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=28.9
Q ss_pred hcCeEEEEEeCCCC--cchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 290 VLDGAILVLCAVGG--VQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 290 ~~D~~ilVvda~~g--~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|++|+|+|+.+. ........| ..+ ...++|+++|.||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 333322222 222 23579999999999975
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-09 Score=118.81 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH---HHHHHhh------
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV---EVERALR------ 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~---~~~~~~~------ 72 (1043)
+|+.++ |..++||+|...+...... .....+++|+......+.+++..++||||||+.++.. .....+.
T Consensus 37 ~~I~lv-G~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~ 115 (262)
T 3def_A 37 MTVLVL-GKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNR 115 (262)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcC
Confidence 577777 9999999999766665543 4566788999999889999999999999999986532 2222222
Q ss_pred hcCEEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCEEEEEecCCCC
Q psy11896 73 VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-----DVPCIAFINKLDRL 115 (1043)
Q Consensus 73 ~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~-----~~piilvlNKiDl~ 115 (1043)
.+|++++|+|... .....+...+..+... ..|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 7899999988764 3444455555555432 24899999999985
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=119.75 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=52.6
Q ss_pred CeeEEEEcCCCCCCc-------------hHHHHHHhHhcCeEEEEEeCCC-C-cchHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 266 DHNINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCAVG-G-VQSQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 266 ~~~i~liDtPG~~df-------------~~e~~~~l~~~D~~ilVvda~~-g-~~~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
...+.||||||..++ ...+..+++.+|++|+|+|+.. . .......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 568999999998887 4556778899999999998753 2 233345556666667889999999999
Q ss_pred CCC
Q psy11896 331 RLG 333 (1043)
Q Consensus 331 ~~~ 333 (1043)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.4e-09 Score=114.63 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=82.0
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH---HH----HHHH--hh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT---VE----VERA--LR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~---~~----~~~~--~~ 72 (1043)
+|+.++ |..++||+|...+...+.. .....+++|++.....+..++..+.||||||+.++. .. +..+ .+
T Consensus 40 ~~I~vv-G~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 118 (270)
T 1h65_A 40 LTILVM-GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDK 118 (270)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcC
Confidence 567777 9999999998666555443 345678899988888888899999999999997643 22 2222 23
Q ss_pred hcCEEEEEEeCCC-CCchhHHHHHHHHHhc-C----CCEEEEEecCCCCC
Q psy11896 73 VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRLG 116 (1043)
Q Consensus 73 ~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~-~----~piilvlNKiDl~~ 116 (1043)
.+|++++|+|++. .....+...+..+... + +|+++|+||+|+..
T Consensus 119 ~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 119 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 6999999988764 3444555555555432 3 69999999999864
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-09 Score=115.37 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=57.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------- 266 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------- 266 (1043)
.+|+++|.+|+|||||+++|+..... ....+++|+......+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---------------------v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~ 61 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE---------------------AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPE 61 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCceECceEEEEecCCcccceeeeeeccc
Confidence 46999999999999999999853311 11233344444333344433
Q ss_pred ----eeEEEEcCCCCCCchHH-------HHHHhHhcCeEEEEEeCCC
Q psy11896 267 ----HNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 ----~~i~liDtPG~~df~~e-------~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.+|||||+.++..+ ....++.+|++++|+|+.+
T Consensus 62 ~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 62 RILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 57999999999987533 4566899999999999985
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-09 Score=129.70 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=86.0
Q ss_pred CCccccceEEEEec-CeeEEEEeCCCCcc-------------hHHHHHHHh-hhcCEEEEEEeCCCCCchhHH-HHHHHH
Q psy11896 35 GITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERAL-RVLDGAILVLCAVGGVQSQTL-TVNRQM 98 (1043)
Q Consensus 35 G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------------~~~~~~~~~-~~aD~iIlVvDa~~~~~~~~~-~~~~~l 98 (1043)
|++.++....+... ..+++|+||||+.. +...+..++ ..+|++++|+|++.++..++. .++..+
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 213 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH
Confidence 34444444444443 34799999999864 223344455 478999999999988877776 678888
Q ss_pred HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 99 KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 99 ~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
...++|+++|+||+|+.+.... . ..+.. .. + ......+.+++++||++|.|+++|.+.+..
T Consensus 214 ~~~g~pvIlVlNKiDlv~~~~~-~-~~il~--~~------~-~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 214 DPQGQRTIGVITKLDLMDEGTD-A-RDVLE--NK------L-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CTTCSSEEEEEECTTSSCTTCC-S-HHHHT--TC------S-SCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HhcCCCEEEEEeCcccCCcchh-h-HHHHH--HH------h-hhhhccCCceEEecccccccchhHHHHHHH
Confidence 8889999999999999754321 1 11111 00 0 001235678999999999999999999886
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=116.53 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=46.0
Q ss_pred CeeEEEEcCCCCCCchHH------HHHHhHhcCeEEEEEeCCCCcchHHHHH-----HHHHHhcCCCeEEEEeccCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVE------VERALRVLDGAILVLCAVGGVQSQTLTV-----NRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e------~~~~l~~~D~~ilVvda~~g~~~~t~~~-----~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++.+.||||||..++... +..++.. +.+++++|+........... .......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 468999999998765322 2334555 88899999876655444321 1223445899999999999864
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-10 Score=130.37 Aligned_cols=218 Identities=19% Similarity=0.166 Sum_probs=114.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCce-eeeeecCCccccccccch-hhhhhcCceEeeee-------------EE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRIS-EMHEVRGKDNVGAVMDSM-ELERQRGITIQSAA-------------TY 261 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~-~~~~v~~~~~~~~~~d~~-~~e~~~giTi~~~~-------------~~ 261 (1043)
.+.++|+++|++|+||||++++|..+..... ++.-++.........+++ ......++.+.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999985432111 111111100000011111 11122334332210 01
Q ss_pred EEecCeeEEEEcCCCCCC----chHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVD----FTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGA 334 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~d----f~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~ 334 (1043)
+.++++.+.||||||... +..++.... ..+|.+++|+|+..|.. ....++.... .+|+ .+|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 124788999999999764 333333332 27899999999998854 2333333322 2785 89999999873
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEee-cCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~-~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
.....+. +.+.++..+.. +..+ ..+. |+.......| +.-.|. .....|+|.+.+.
T Consensus 255 ~~g~~l~-~~~~~g~PI~f--ig~g--e~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPIIF--IGTG--EHID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCEEE--EECS--SSTT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCeEE--eccc--cchh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 2223333 55666643321 1111 1111 1111000000 000010 0024566666654
Q ss_pred ----ChHHHHHHhccCCCCHHHHHHHHHHhhhcC
Q psy11896 414 ----DEILGEMFLEEKSISEDDIKKAIRRSTLTR 443 (1043)
Q Consensus 414 ----dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~ 443 (1043)
+++++++|+++ +++.+++...+++....+
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G 343 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 66888888887 677777777777654444
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.5e-09 Score=117.96 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
+.|+ |..++||+|...............+.+|..++...+.+++ ..++++||||+.+ +.......+..+|.
T Consensus 160 VgLV-G~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 160 VGLV-GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp EEEE-CCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEE-CCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 3455 9999999998655554444445667889999888888876 7899999999853 33344556678999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+++|+|++.....+.....+++.. ...|.++++||+|+... ..++.+.+.+. . . ..+++
T Consensus 239 lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~----~------~---g~~vi 302 (416)
T 1udx_A 239 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALA----R------E---GLAVL 302 (416)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHH----T------T---TSCEE
T ss_pred hhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHH----h------c---CCeEE
Confidence 999999961111111111222221 36899999999998752 33344433321 0 0 13578
Q ss_pred eeeecccCCcchHHHHHHhhccc
Q psy11896 152 GISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+||+++.|+++|++.+...+..
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999887764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-09 Score=116.62 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+.++|.+++| |+..+ ......+-+++ ...++|.++|+||+|+.+.......+.+...+. ...
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~------------~~G- 192 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR------------NIG- 192 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH------------TTT-
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH------------hCC-
Confidence 5789999976 55543 33333333333 457899999999999975321111222222221 112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhccc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
.+++.+||.++.|+++|...+. + ..++++|++|+|||||++.|+...
T Consensus 193 ~~v~~~Sa~~~~gl~~L~~~~~---G--------------------------~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 193 YRVLMVSSHTQDGLKPLEEALT---G--------------------------RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp CCEEECBTTTTBTHHHHHHHHT---T--------------------------SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CcEEEEecCCCcCHHHHHHhcC---C--------------------------CEEEEECCCCccHHHHHHHHhccc
Confidence 2578999999999988776431 1 248999999999999999998543
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-09 Score=117.57 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=89.8
Q ss_pred cCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc--------hhH---HHHHHHHHh--
Q psy11896 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ--------SQT---LTVNRQMKR-- 100 (1043)
Q Consensus 34 ~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~--------~~~---~~~~~~l~~-- 100 (1043)
+..|+......+..++..+.+|||+|+..+...|..++++++++|||+|.++.-+ ..- ...+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 3456666677788889999999999999999999999999999999999986211 111 222333322
Q ss_pred --cCCCEEEEEecCCCCC------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 --YDVPCIAFINKLDRLG------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 --~~~piilvlNKiDl~~------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+|||+||+|+.. .+.++..+.+...+.. +..........++.+||+++.|
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~etSA~~~~n 330 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED------LNKRKDTKEIYTHFTCATDTKN 330 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHT------TCSCTTTCCEEEEECCTTCHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEECcCchh
Confidence 3689999999999841 1223333333332221 1110001124567899999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+...+
T Consensus 331 V~~vF~~v~~~i 342 (353)
T 1cip_A 331 VQFVFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-09 Score=118.91 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=72.2
Q ss_pred ccceeeeeecccccccCCcccc-CCChhhhh--------hcCCccccceEEEEecCe--eEEEEeCCCCcc-------hH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV-MDSMELER--------QRGITIQSAATYTLWKDH--NINIIDTPGHVD-------FT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~-~d~~~~e~--------~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-------~~ 64 (1043)
||+.++ |..++||+|...+.. .+.+.... .++++++.....+..++. .+++|||||+.+ +.
T Consensus 38 ~~I~vv-G~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 38 FTLMVV-GESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp ECEEEC-CCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred EEEEEE-cCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 677777 999999999866633 23332222 133333333333444444 799999999943 22
Q ss_pred HHH-------HHHhhhc-------------CEEEEEEeC-CCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHH
Q psy11896 65 VEV-------ERALRVL-------------DGAILVLCA-VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 65 ~~~-------~~~~~~a-------------D~iIlVvDa-~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~ 123 (1043)
..+ ..+++.+ |++++++|. ..++...+..+...+. .++|+|+|+||+|+... .+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~--~ev- 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL--KER- 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCH--HHH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCH--HHH-
Confidence 112 1455443 467888876 4566666665555553 57899999999998742 111
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
..+.+.+..+... . ..+++++||++|.| ++.+..+..
T Consensus 193 ~~~k~~i~~~~~~------~---~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 193 ERLKKRILDEIEE------H---NIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHHHHHTTC------C----CCSCCCC----------CHHHHH
T ss_pred HHHHHHHHHHHHH------C---CCCEEeCCCcCCCc-chhHHHHHH
Confidence 1111122111111 1 13568899999998 665555443
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=107.03 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=56.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---------------- 263 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 263 (1043)
.+|+++|++|+|||||+++|+.....+.. .+++|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~---------------------~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN---------------------YPFATIDKNVGVVPLEDERLYALQRTFAKG 60 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS---------------------CCGGGGSTTEEEEECCCHHHHHHHHHHCBT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC---------------------CCCceeccceeeEecChHHHHHHHHHhccc
Confidence 46999999999999999999855321111 11112222221111
Q ss_pred -----ecCeeEEEEcCCCCCCc-------hHHHHHHhHhcCeEEEEEeCCC
Q psy11896 264 -----WKDHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 264 -----~~~~~i~liDtPG~~df-------~~e~~~~l~~~D~~ilVvda~~ 302 (1043)
+.+..+.+|||||..++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23467999999998775 2456677899999999999985
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=113.20 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcch
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVDF 63 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~~ 63 (1043)
|.+|+.++ |.+++||+|...+.+.........|++|++++.+.+.+.+ ..+.||||||+.++
T Consensus 1 m~~kI~IV-G~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIV-GLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 55788888 9999999998777776666677889999999998888766 57999999999875
Q ss_pred H-------HHHHHHhhhcCEEEEEEeCCC
Q psy11896 64 T-------VEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 64 ~-------~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
. ..+..+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 4 345677899999999999985
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=115.24 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=81.2
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--------chh---HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV--------QSQ---TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~--------~~~---~~~~~~~l~~--- 100 (1043)
..|+......+..++..+.+|||||+..+...|..++++++++|||+|.++.- ... ....+..+..
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34666666778888999999999999999999999999999999999998621 111 1222333322
Q ss_pred -cCCCEEEEEecCCCCC-------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 -YDVPCIAFINKLDRLG-------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 -~~~piilvlNKiDl~~-------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+|+++||+|+.. .+.++..+.+...+.. +..........++.+||+++.|
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~~tSA~d~~n 339 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG------KRRDQQQRPLYHHFTTAINTEN 339 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT------TCSSCC--CCEEEECCTTCHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEecCCchh
Confidence 3689999999999841 1222233333222211 1110001123567899999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+...+
T Consensus 340 V~~vF~~v~~~i 351 (362)
T 1zcb_A 340 IRLVFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-09 Score=117.27 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=70.7
Q ss_pred CeeEEEEeCCCCcch-------------HHHHHHHhhhcCEEEEEEeCCC-CCc-hhHHHHHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCAVG-GVQ-SQTLTVNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~-------------~~~~~~~~~~aD~iIlVvDa~~-~~~-~~~~~~~~~l~~~~~piilvlNKiD 113 (1043)
...+.||||||+.++ ...+..+++.+|++|+|+|+.. ... .....++..+...++|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999999875 6778889999999999998753 222 3334555666667889999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHH
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERI 168 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l 168 (1043)
+...... ..+.+.. ...... .+.+++|+.++.++++.+...
T Consensus 215 l~~~~~~-~~~~~~~----------~~~~~~---~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 LMDKGTD-AVEILEG----------RSFKLK---YPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GCCTTCC-SHHHHTT----------SSSCCS---SCCEEECCCCHHHHHTTCCHH
T ss_pred cCCCccc-HHHHHcC----------cccccc---CCeEEEEECChHHhccCCCHH
Confidence 8753211 1121211 111122 244678999988887765543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=108.57 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=116.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCc-eeeeeecCCcccc-ccccchh-hhhhcCceEeeee-------------EE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRI-SEMHEVRGKDNVG-AVMDSME-LERQRGITIQSAA-------------TY 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~-~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~-------------~~ 261 (1043)
..+.|+++|+.|+||||++..|..+.... ....-+-+.+++. ...+... .....|+.+.... ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998554322 1111111111100 0011100 1122333332211 01
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHH------hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERA------LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~------l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
+.++++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..+++ .-+|+||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~~- 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGDA- 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSSS-
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCCc-
Confidence 12357899999999987765554443 336789999999987732 22222222 22455 347999999863
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHH--HHHHHHHHh-
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESK--RQELIEHVA- 411 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~--r~~l~e~l~- 411 (1043)
... ....+...++..+.++ +.+.....+ ..|+ |..+...+... ...|+|.+.
T Consensus 255 ~~g-~~l~i~~~~~~Pi~~i----G~ge~v~dl--------~~f~------------p~~~a~~l~g~gD~~~Lie~a~~ 309 (433)
T 2xxa_A 255 RGG-AALSIRHITGKPIKFL----GVGEKTEAL--------EPFH------------PDRIASRILGMGDVLSLIEDIES 309 (433)
T ss_dssp CCT-HHHHHHHHHCCCEEEE----ECSSSSSCE--------EECC------------HHHHHHHHHCCCTTHHHHHHHHH
T ss_pred cHH-HHHHHHHHHCCCeEEE----ecCCCchhh--------hhcC------------hHHHHHHHhCccchHHHHHHHHH
Confidence 222 3335666666443321 111111110 0111 12222222111 222333322
Q ss_pred ----cCChHHHHHHhccCCCCHHHHHHHHHHhhhcCcc
Q psy11896 412 ----EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKF 445 (1043)
Q Consensus 412 ----e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 445 (1043)
+.+++++++|+++..++.+++...+++....+.+
T Consensus 310 ~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 310 KVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred hhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3367889999987789999999999887655544
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-09 Score=116.37 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=72.7
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~ 125 (1043)
..++.+.||||||...... ..+..+|++++|+|+..+...+... .. ...+|.++|+||+|+... ......+.
T Consensus 169 ~~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~--~~--~~~~p~ivVlNK~Dl~~~~~~~~~~~~ 241 (355)
T 3p32_A 169 AAGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK--KG--VLELADIVVVNKADGEHHKEARLAARE 241 (355)
T ss_dssp HTTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC--TT--SGGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH--Hh--HhhcCCEEEEECCCCcChhHHHHHHHH
Confidence 3578899999999765332 3458999999999987543221111 11 124699999999998642 12222333
Q ss_pred HHHhhhhccccccccCCCCcc-ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 126 MRQKTSRWISNESLSEHKPIE-YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~-~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+.+.+..+ .. .... ..+++++||++|.|+++|++.+...+..
T Consensus 242 l~~~l~~~------~~-~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 242 LSAAIRLI------YP-REALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHH------ST-TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhc------cc-cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 33332110 00 0011 2478999999999999999999887653
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-08 Score=108.33 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=90.2
Q ss_pred cCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC--------Cchh---HHHHHHHHHh--
Q psy11896 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--------VQSQ---TLTVNRQMKR-- 100 (1043)
Q Consensus 34 ~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--------~~~~---~~~~~~~l~~-- 100 (1043)
+..|+......+..++.++.+|||+|++.+...|..++++++++|||+|.++. -... ....+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 34577777788888899999999999999999999999999999999998720 1111 1222332222
Q ss_pred --cCCCEEEEEecCCCCC------------------CCHHHHHHHHHHhhhhccccccccCCCC----------ccceee
Q psy11896 101 --YDVPCIAFINKLDRLG------------------ADPYRVINQMRQKTSRWISNESLSEHKP----------IEYIRN 150 (1043)
Q Consensus 101 --~~~piilvlNKiDl~~------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~----------~~~~~i 150 (1043)
.++|+++++||+|+.. .+.++..+.+.+.+...+....+..... -....+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 4689999999999842 1223333444444311111111111111 012345
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||+...|++.+++.+....
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHH
Confidence 7899999999999998887654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-08 Score=116.57 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=82.4
Q ss_pred ccceeeeeecccccccCCccccCCCh---hhhhhcCCccccceE------------------------------------
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM---ELERQRGITIQSAAT------------------------------------ 43 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~---~~e~~~G~T~~~~~~------------------------------------ 43 (1043)
.++.++ |..++||+|...+.+.... ....+|++|+.....
T Consensus 66 ~~V~vv-G~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 66 PMVLVA-GQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CEEEEE-EBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 456666 9999999998766665554 245566665421110
Q ss_pred EEEecC---eeEEEEeCCCCcc-----------hHHHHHHHhhhcCEEEEEEeCCC-CCchhHHHHHHHHHhcCCCEEEE
Q psy11896 44 YTLWKD---HNINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAF 108 (1043)
Q Consensus 44 ~~~~~~---~~i~liDTPG~~~-----------~~~~~~~~~~~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~~~piilv 108 (1043)
.+.+.+ .+++||||||+.+ |...+..+++.+|++|+|+|++. +....+..++..+...+.|+++|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilV 224 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV 224 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 000111 3699999999975 66778889999999999999987 46777777778787778899999
Q ss_pred EecCCCCC
Q psy11896 109 INKLDRLG 116 (1043)
Q Consensus 109 lNKiDl~~ 116 (1043)
+||+|+..
T Consensus 225 lNK~Dl~~ 232 (550)
T 2qpt_A 225 LNKADMVE 232 (550)
T ss_dssp EECGGGSC
T ss_pred EECCCccC
Confidence 99999974
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-08 Score=110.64 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=39.4
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+..+.||||||..+-.. .....+|.+++|+|+..+...+. +.. ....+|.++++||+|+.
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHH--HHhccccEEEEEchhcc
Confidence 4688999999999765322 22478999999999865422110 000 01134778899999975
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=105.60 Aligned_cols=131 Identities=10% Similarity=-0.007 Sum_probs=88.8
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC-------CCCch-h---HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV-------GGVQS-Q---TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~-------~~~~~-~---~~~~~~~l~~--- 100 (1043)
..|+......+..++.++.+|||+|++.+...|..++++++++|||+|.+ +.... . ....+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 45666677788889999999999999999999999999999999999765 21111 1 1222333322
Q ss_pred -cCCCEEEEEecCCCCC-------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 -YDVPCIAFINKLDRLG-------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 -~~~piilvlNKiDl~~-------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+++++||+|+.. .+.++..+.+...+... ..... .....+.+||+++.|
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~------~~~~~-~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL------NPDSD-KIIYSHFTCATDTEN 304 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS------CTTTT-SCEEEEECCTTCHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh------ccccc-CCcEEEEEEeecCHH
Confidence 3689999999999742 13333444444433211 11111 123456799999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++.+++.+....
T Consensus 305 V~~vF~~v~~~I 316 (327)
T 3ohm_A 305 IRFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-07 Score=106.10 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=63.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---------------------CeeEEEEeCCCC
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------------------DHNINIIDTPGH 60 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---------------------~~~i~liDTPG~ 60 (1043)
++|+.|+ |.+++||+|...............|++|++++.+..... +..+.||||||+
T Consensus 1 ~~~v~IV-G~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 1 MLAVGIV-GLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CCSEEEE-CCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4678888 999999999865444332233456788999998877543 357999999999
Q ss_pred cc-------hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 61 VD-------FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 61 ~~-------~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
.+ +...+...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 75 34567788999999999999985
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=103.95 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=102.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccchh-hhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSME-LERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~-------------~~~~ 263 (1043)
.+.|+++|+.|+||||++..|............+.+.+.+. ...+... .....|+...... ..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 47799999999999999999974432111100010000000 0000000 0111232221110 0111
Q ss_pred ecCeeEEEEcCCCCCC------chHHHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 264 WKDHNINIIDTPGHVD------FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~d------f~~e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
+.++.+.||||||... +..++....+ ..|.+++|+|+..|.. .....+...+.-.+..+++||+|.. +.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~-a~ 253 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT-AK 253 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC-SC
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc-cc
Confidence 3478999999999644 3444443332 4589999999998643 2233333333335678999999987 34
Q ss_pred HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHH------HHHHHHHHHHH
Q psy11896 336 PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE------AESKRQELIEH 409 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~------~~~~r~~l~e~ 409 (1043)
....+. +....+..+..+ +.|.+... .....|..+... +...++++.+.
T Consensus 254 ~G~als-~~~~~g~Pi~fi----g~Ge~v~d--------------------L~~f~p~~~~~~llg~gd~~~l~e~~~~~ 308 (433)
T 3kl4_A 254 GGGALS-AVVATGATIKFI----GTGEKIDE--------------------LETFNAKRFVSRILGMGDIESILEKVKGL 308 (433)
T ss_dssp HHHHHH-HHHHHTCEEEEE----ECCSSSSC--------------------EEECCHHHHHHHHHCSSHHHHHHHHHHHC
T ss_pred chHHHH-HHHHHCCCEEEE----ECCCChHh--------------------CccCCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 433333 334444332211 11111111 112234555553 34455555555
Q ss_pred HhcCC-hHHHHHHhccC-CCCHHHHHHHHHHhhhcC
Q psy11896 410 VAEGD-EILGEMFLEEK-SISEDDIKKAIRRSTLTR 443 (1043)
Q Consensus 410 l~e~d-d~l~~~~l~~~-~~~~~~l~~~l~~~~~~~ 443 (1043)
+.+.+ ++++++|.++. .++.+++...+++-...+
T Consensus 309 ~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 309 EEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp -------------------CCHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 54444 67889998886 899999988887654444
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-08 Score=102.02 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=64.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCce---Eeee-e------------EE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT---IQSA-A------------TY 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giT---i~~~-~------------~~ 261 (1043)
+.++|+++|+.|+|||||+++|+...........+.... ....|....+. .|.. +... . ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~--~~~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV--IAKFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET--TTHHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC--CCCccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHH
Confidence 468899999999999999999996543222222221110 00111111111 0110 0000 0 00
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+...+..+.++||+|...-... .-...+..+.++|+..+...... .....+.|.++|+||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 0112347899999995321100 01234667788887544322211 1122468999999999974
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=105.10 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
.+-|| |-+.+||+|.+-+.+.........|++|++++.+.+.+.+.++.|+||||+.+ ....+...++.||+
T Consensus 74 ~V~iv-G~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 74 SVGFV-GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEE-CCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred eEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 35567 99999999997776666666788899999999999999999999999999863 45667889999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCC
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 115 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~ 115 (1043)
+++|+|++++.. ....+...+.. ..+|.++++||+|..
T Consensus 153 il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999986432 22222233332 356889999999964
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-07 Score=92.43 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=64.4
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc-hhHHHH---HHHHHh----cCCCEEEEEecC-CCCCCCHHHHHHHHH
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTV---NRQMKR----YDVPCIAFINKL-DRLGADPYRVINQMR 127 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~-~~~~~~---~~~l~~----~~~piilvlNKi-Dl~~~~~~~~~~~l~ 127 (1043)
..|+..+...|..|++++|++|||||+++.-. ....++ ...+.+ .+.|++|+.||. |++.+-.. .++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHH
Confidence 34888999999999999999999999986422 222222 222321 478999999995 77654322 3444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.++ +... . ..+.|.++||.+|+|+.+-++++...+
T Consensus 186 e~L~-------L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 186 HELH-------LNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHTT-------GGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHcC-------CcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 4442 2221 1 346889999999999888777776544
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-07 Score=104.99 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC----------CCchh-HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----------GVQSQ-TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~----------~~~~~-~~~~~~~l~~--- 100 (1043)
..|+......+..++.++.+|||+|+.++...|..++++++++|||+|.++ .-... ....+..+..
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 345556666778889999999999999999999999999999999999985 11111 1222333322
Q ss_pred -cCCCEEEEEecCCCC
Q psy11896 101 -YDVPCIAFINKLDRL 115 (1043)
Q Consensus 101 -~~~piilvlNKiDl~ 115 (1043)
.++|++||+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 367999999999973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-07 Score=99.88 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=60.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeec-CCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVR-GKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~-~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
.+|+++|+.|+|||||+++|+....... .+ +. .+.. . ..++........+... ...++++||||
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~-~g-i~~~g~~---------~--~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE-RV-ISGAAEK---------I--ERTVQIEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC-CC-cccCCcc---------c--CCcceEeeEEEEecCCCcccCcchhhhhh
Confidence 5689999999999999999874311111 01 10 0000 0 0011111111111111 35789999999
Q ss_pred C-------CCchHHHH-------HHhHhc-------------CeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 277 H-------VDFTVEVE-------RALRVL-------------DGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 277 ~-------~df~~e~~-------~~l~~~-------------D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
+ ..|...+. ..++.+ +.++++++.. .|+.......++.+. .+.|+++|+||
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K 164 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 164 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEe
Confidence 8 33332222 333332 2356666654 457777765555543 46799999999
Q ss_pred cCCCC
Q psy11896 329 LDRLG 333 (1043)
Q Consensus 329 iD~~~ 333 (1043)
.|+..
T Consensus 165 ~Dl~~ 169 (301)
T 2qnr_A 165 ADTLT 169 (301)
T ss_dssp GGGSC
T ss_pred CCCCC
Confidence 99863
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.3e-08 Score=109.88 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~ 125 (1043)
..++.+.|+||||+.... ......+|++++|+|+..+...+. +... -...|.++|+||+|+.... .......
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~--i~~~--il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG--IKRG--IIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH--hHHH--HHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 367789999999975322 334678999999999886432211 1111 1357889999999986321 1112223
Q ss_pred HHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 126 MRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+...+.. +.........+++++||++|.|+++|++.+....+
T Consensus 237 l~~~l~~------~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKL------LRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTT------CC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHh------cCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3322210 00000011347899999999999999999987664
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-07 Score=103.15 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=62.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE--EecC--eeEEEEcCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT--LWKD--HNINIIDTP 275 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~--~~i~liDtP 275 (1043)
.+|+|+|+.|+|||||++.|+........ .++. ..+. .. |+......+ ...+ ..++++|||
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~----~~~~----~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~ 96 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGP----SHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTP 96 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC----CCSC----C------------CCEEEEEECC------CEEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC----CCCc----ccCC-----cc--ceeeeeEEEEEecCCcccceeeeech
Confidence 45799999999999999999754321110 0110 0000 00 111111111 1122 368999999
Q ss_pred CCCCchH------HH--------HHHh-----------Hh--cCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEe
Q psy11896 276 GHVDFTV------EV--------ERAL-----------RV--LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFIN 327 (1043)
Q Consensus 276 G~~df~~------e~--------~~~l-----------~~--~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviN 327 (1043)
|+.++.. .+ ..++ +. +++++++++.. .++.+....+++.+. .++|+|+|+|
T Consensus 97 g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVin 175 (418)
T 2qag_C 97 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIA 175 (418)
T ss_dssp -----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEE
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEE
Confidence 9876532 11 1111 12 34466666665 688887766666664 4899999999
Q ss_pred ccCCCC
Q psy11896 328 KLDRLG 333 (1043)
Q Consensus 328 KiD~~~ 333 (1043)
|+|+..
T Consensus 176 K~Dll~ 181 (418)
T 2qag_C 176 KADTLT 181 (418)
T ss_dssp STTSSC
T ss_pred cccCcc
Confidence 999863
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-07 Score=105.31 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=70.8
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~ 125 (1043)
+.++.++||||||+.++... ..+.+|++++|+|+..+...+.. .. ...++|.++|+||+|+.+. +.....+.
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l--~~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI--KK--GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC--CH--HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH--HH--hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 45789999999999876544 35899999999998754221111 00 1125689999999998642 12222334
Q ss_pred HHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 126 MRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.+..+ .........+++++||++|.|+++|++.+.....
T Consensus 219 l~~~l~~~------~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHIL------RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHS------CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhc------cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 44332110 0000001246789999999999999999987553
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=94.33 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=71.7
Q ss_pred CeeEEEEeCCCCcchHHH------HHHHhhhcCEEEEEEeCCCCCchhHHH-H----HHHHHhcCCCEEEEEecCCCCCC
Q psy11896 49 DHNINIIDTPGHVDFTVE------VERALRVLDGAILVLCAVGGVQSQTLT-V----NRQMKRYDVPCIAFINKLDRLGA 117 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~------~~~~~~~aD~iIlVvDa~~~~~~~~~~-~----~~~l~~~~~piilvlNKiDl~~~ 117 (1043)
++.+.||||||+.++... +..++.. +++|+|+|+.......+.. . .......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 357999999999865322 3345566 8999999987655544322 1 12233457899999999998642
Q ss_pred CH-HHHHHHHHHhhhhccccc------------c---ccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 118 DP-YRVINQMRQKTSRWISNE------------S---LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 118 ~~-~~~~~~l~~~~~~~~~~~------------~---l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.. ....+.+++ +....... . +...+ ....+++++||++|.|+++|++.+...+..
T Consensus 187 ~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21 111111110 00000000 0 00000 011367899999999999999999876653
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-07 Score=104.98 Aligned_cols=135 Identities=8% Similarity=-0.022 Sum_probs=78.7
Q ss_pred ccccceEEEEe------cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC-------CCc-hhH---HHHHHHHH
Q psy11896 37 TIQSAATYTLW------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQ-SQT---LTVNRQMK 99 (1043)
Q Consensus 37 T~~~~~~~~~~------~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~-------~~~-~~~---~~~~~~l~ 99 (1043)
|.......+.. ...++.+|||+|++++...|..++++++++|||+|.++ ... ..- ...+..+.
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~ 243 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHH
Confidence 44444444444 34689999999999999999999999999999999871 111 111 22233332
Q ss_pred h----cCCCEEEEEecCCCCCC-----C-------------------HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 100 R----YDVPCIAFINKLDRLGA-----D-------------------PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 100 ~----~~~piilvlNKiDl~~~-----~-------------------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
. .++|++||+||+|+... . .++..+.+.+.+........ ..........++
T Consensus 244 ~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~-~~~~~~~~~~~~ 322 (354)
T 2xtz_A 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT-APDRVDRVFKIY 322 (354)
T ss_dssp TCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC-CTTTTTSCEEEE
T ss_pred hccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccc-cccccCcceEEE
Confidence 2 36899999999997321 0 11111111222111000000 000000112357
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+||+++.|++++++.+....
T Consensus 323 eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 323 RTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHH
Confidence 899999999999999887654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=7e-07 Score=101.17 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=50.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------ 266 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 266 (1043)
-.+|+++|.+|+|||||+++|+..... ....+++|+......+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~---------------------~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p 80 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQAS---------------------AENFPFCTIDPNESRVPVPDERFDFLCQYHKP 80 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC----------------------------------CCSEEEEECCCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc---------------------ccCCCccccCceeEEEEECCccceeeccccCc
Confidence 357999999999999999999743211 12244555555554444432
Q ss_pred -----eeEEEEcCCCCCCchH-------HHHHHhHhcCeEEEEEeCCC
Q psy11896 267 -----HNINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 -----~~i~liDtPG~~df~~-------e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.+|||||+..+.. .....++.+|++++|+|+.+
T Consensus 81 ~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 81 ASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp SEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3599999999987654 45678899999999999974
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.5e-07 Score=98.86 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=73.0
Q ss_pred CccceeeeeecccccccCCccccC-CChhhhh--------hcCCccccceEEEEec--CeeEEEEeCCCC-------cch
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVM-DSMELER--------QRGITIQSAATYTLWK--DHNINIIDTPGH-------VDF 63 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~-d~~~~e~--------~~G~T~~~~~~~~~~~--~~~i~liDTPG~-------~~~ 63 (1043)
.||+.++ |..++||+|....... +.++.+. .+++.+......+... ...+++|||||+ ..+
T Consensus 18 ~~~I~lv-G~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 18 EFTLMVV-GESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CEEEEEE-CCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3677677 9999999999766333 2444332 1222222222222222 247999999999 322
Q ss_pred HHHHH-------HHhhhc-------------CEEEEEEeCCC-CCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HH
Q psy11896 64 TVEVE-------RALRVL-------------DGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YR 121 (1043)
Q Consensus 64 ~~~~~-------~~~~~a-------------D~iIlVvDa~~-~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~ 121 (1043)
...+. .+++.+ ++++++++.+. ++...+..+++.+. .++|+++|+||.|+..... ..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence 22222 344333 34666666543 47776655555543 3579999999999864211 11
Q ss_pred HHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 122 VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 122 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+.+.+.+ .. .. .+++.+||++| |+++++..+...+
T Consensus 176 ~~~~~~~~~----~~------~~---~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEI----EE------HN---IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHH----HH------TT---CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHH----HH------cC---CeEEecCCccc-cccHHHHHHHHHh
Confidence 122222221 11 11 25577999999 9999998887554
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-07 Score=97.73 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC---CHHHHHH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA---DPYRVIN 124 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~---~~~~~~~ 124 (1043)
.+..+.+|||||+...... +...++.+++|+|++.+... .+......++|.++|+||+|+... +..+..+
T Consensus 107 ~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHHH
Confidence 3457999999995211100 01246889999999865322 222233346899999999998531 2332222
Q ss_pred HHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 125 QMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 125 ~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+.+. ....+++++||++|.|+++|++.+...+.
T Consensus 180 ~~~~~---------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 180 DAKLI---------------NPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHH---------------CTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHh---------------CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 22211 11246789999999999999999986554
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=87.04 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---
Q psy11896 498 GKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 572 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--- 572 (1043)
.++||.+.|..++. ..|++..|||.+|++++||.|.+.+.+.+.+|.+|+ ...+++++|.|||.+++ .|+
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~----~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGIL----SDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp ----CBEEEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEEC----SSSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCEEEEEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEE----ECCEEeEEECCCCEEEEEEcCCCHH
Confidence 47899999988876 459999999999999999999999988889999987 33468999999999997 777
Q ss_pred ccccCcEEecCCC
Q psy11896 573 DCASGDTFVTDKN 585 (1043)
Q Consensus 573 ~~~~Gdtl~~~~~ 585 (1043)
|+..||+|+ +++
T Consensus 78 di~rG~vl~-~~~ 89 (204)
T 3e1y_E 78 EILPGFILC-DPN 89 (204)
T ss_dssp CCCTTCEEB-CSS
T ss_pred HCccceEEE-CCC
Confidence 678999999 443
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.7e-06 Score=88.87 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=70.1
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--chhHH--HHHHHHH----hcCCCEEEEEec-CCCCCCCHHHHHHHHH
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV--QSQTL--TVNRQMK----RYDVPCIAFINK-LDRLGADPYRVINQMR 127 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~--~~~~~--~~~~~l~----~~~~piilvlNK-iDl~~~~~~~~~~~l~ 127 (1043)
..|+..+...|..|+.++|++|||||+++.- ....+ ++...+. ..+.|++|++|| .|++.+-.. .++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHH
Confidence 4688999999999999999999999998643 22221 1112221 258899999997 588764322 3444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.++ +... . ..+.|.++||.+|+|+.+-++++...+.
T Consensus 271 e~L~-------L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELH-------LNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTT-------GGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcC-------CccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 4442 2221 1 3467899999999998888888776543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-06 Score=94.49 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=77.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+...+.+++|+|+.|+|||||++.|+... + .+. . . .....+.+.......+...+ ..++++
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l------~g~-~---~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK--F------EGE-P---A-----THTQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC--C----------------------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc--c------cCC-c---C-----CCCCccceEeeEEEEeecCccccccchh
Confidence 34456789999999999999999997542 1 000 0 0 00012223322111122222 268999
Q ss_pred cCCCCCCch--------------HHHHHHhHh---------------cC-eEEEEEeCCCCcchHHHHHHHHHHhcCCCe
Q psy11896 273 DTPGHVDFT--------------VEVERALRV---------------LD-GAILVLCAVGGVQSQTLTVNRQMKRYDVPC 322 (1043)
Q Consensus 273 DtPG~~df~--------------~e~~~~l~~---------------~D-~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ 322 (1043)
|+||..+.. .....++.. .| ++++++|+.+++......+++.+. .+.|+
T Consensus 101 D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~v 179 (427)
T 2qag_B 101 STVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNI 179 (427)
T ss_dssp EEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEE
T ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCE
Confidence 999976531 111122211 12 366788998999998888888776 78999
Q ss_pred EEEEeccCCCCCC-HHHHHHHHHHHhC
Q psy11896 323 IAFINKLDRLGAD-PYRVINQMRQKVG 348 (1043)
Q Consensus 323 ivviNKiD~~~~~-~~~~~~~i~~~l~ 348 (1043)
|+|+||+|....+ .....+.+.+.+.
T Consensus 180 I~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 180 IPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred EEEEcchhccchHHHHHHHHHHHHHHH
Confidence 9999999987532 2334455555454
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-06 Score=98.60 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=68.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCC------cc--ccceEEEEecC--eeEEEEeCCCCcchHH------H
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGI------TI--QSAATYTLWKD--HNINIIDTPGHVDFTV------E 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~------T~--~~~~~~~~~~~--~~i~liDTPG~~~~~~------~ 66 (1043)
|++.++ |.+++||+|.....+....+.....|. |+ +.....+...+ ..+++|||||+.+... .
T Consensus 32 f~I~lv-G~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 32 FTLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred EEEEEE-CCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 567666 999999999865554443321111111 11 11111112222 2689999999976421 1
Q ss_pred H--------HHH-----------hhh--cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHH
Q psy11896 67 V--------ERA-----------LRV--LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVI 123 (1043)
Q Consensus 67 ~--------~~~-----------~~~--aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~ 123 (1043)
+ ..+ +.+ +++++++++.+ .++...+..++..+.. ++|+|+|+||+|+..... ....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 1 111 223 34566666665 5777777666666654 789999999999864211 1111
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+.+.+ .. ...+++.+|++++.++++++..+...+
T Consensus 190 ~~i~~~~----~~---------~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 190 KQIMKEI----QE---------HKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHH----HH---------HTCCCCCCC-----------------C
T ss_pred HHHHHHH----HH---------cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2222222 11 113456789999999887766665433
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=92.95 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc-cccccchhh-hhhcCceEeeee--------E----EEEe
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV-GAVMDSMEL-ERQRGITIQSAA--------T----YTLW 264 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~-~~~~d~~~~-e~~~giTi~~~~--------~----~~~~ 264 (1043)
.++|+++|++|+||||++..|............+-+.+++ ....+.+.. ....|+.+.... . --.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998643211110001111000 000111110 011121111100 0 0012
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHh------HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-C-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERAL------RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-P-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l------~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p-~ivviNKiD~~~~~~ 336 (1043)
.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+. ....+ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~-~~~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKA-FKEAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHH-HHTTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHH-HhhcccCCeEEEEeCCCCcc-ch
Confidence 578999999999876543333322 25799999999988742 2222222 23346 7 789999999863 33
Q ss_pred HHHHHHHHHHhCCCc
Q psy11896 337 YRVINQMRQKVGHNA 351 (1043)
Q Consensus 337 ~~~~~~i~~~l~~~~ 351 (1043)
...+ .+...++..+
T Consensus 255 g~~l-~~~~~~~~pi 268 (432)
T 2v3c_C 255 GGAL-SAVAETKAPI 268 (432)
T ss_dssp HHHH-HHHHHSSCCE
T ss_pred HHHH-HHHHHHCCCE
Confidence 3333 3666666544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.9e-05 Score=86.54 Aligned_cols=147 Identities=20% Similarity=0.104 Sum_probs=76.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc--cccccchhhhhhcCceEeeeeE-------------EEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV--GAVMDSMELERQRGITIQSAAT-------------YTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~--~~~~d~~~~e~~~giTi~~~~~-------------~~~ 263 (1043)
.+.|+++|.+|+||||++..|..+........-+-..+++ +.+-.-.......|+.+..... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4779999999999999999998543221111111111100 0000000011222332221100 011
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHH
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY 337 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~ 337 (1043)
.+++.+.||||||.......... ....+|.+++|+||..|... ....+.....-.+..+++||+|... ..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~-~g- 255 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA-KG- 255 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS-SH-
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc-cc-
Confidence 24589999999996543333222 22457999999999986432 2333333333345568999999863 22
Q ss_pred HHHHHHHHHhCC
Q psy11896 338 RVINQMRQKVGH 349 (1043)
Q Consensus 338 ~~~~~i~~~l~~ 349 (1043)
.....+....+.
T Consensus 256 G~~ls~~~~~g~ 267 (443)
T 3dm5_A 256 GGALSAVAATGA 267 (443)
T ss_dssp HHHHHHHHTTCC
T ss_pred cHHHHHHHHHCC
Confidence 233344444544
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-06 Score=94.28 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=62.1
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-----------chHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-----------QSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-----------~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-- .......+.....
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344555555667788999999999999999999999999999999999998621 1223333433332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.+.|+++|.||+|+.
T Consensus 257 ~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred cccCCcEEEEEECcCch
Confidence 468999999999963
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=85.58 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecC-CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.+++++|+.|+|||||++.|+....... |.+.- |... ......+++.+..... .-...++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~~g~~i------~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWNREEKI------PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C------CCCCSCCEEEESCC-------CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--CccccCCccc------CcceeeeeeEEEeecC---CCcCCceEEechhhh
Confidence 4799999999999999999985432211 11110 0000 0000011111111100 001367899999964
Q ss_pred Cch------HHH--------HHHh--------------HhcCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 279 DFT------VEV--------ERAL--------------RVLDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 279 df~------~e~--------~~~l--------------~~~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
+.. ..+ ...+ ..++++++++|.. +|+.+....+++.+.+. +++++|+||+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 311 011 1111 1247889999965 89999998888888776 9999999999
Q ss_pred CCCCCC-HHHHHHHHHHHh
Q psy11896 330 DRLGAD-PYRVINQMRQKV 347 (1043)
Q Consensus 330 D~~~~~-~~~~~~~i~~~l 347 (1043)
|....+ .....+.+.+.+
T Consensus 151 D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 988533 223334444434
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.1e-05 Score=91.77 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=61.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------ 266 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 266 (1043)
-.+++++|++|+|||||+++|+..... .....+++|+......+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a--------------------~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~ 79 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLG--------------------NPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 79 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTT--------------------STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc--------------------cccCCCceeecceeeeeeeCCcchhhhhhhccc
Confidence 457999999999999999999853210 012245566666655555554
Q ss_pred -----eeEEEEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCC
Q psy11896 267 -----HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 -----~~i~liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.++||||... +.......++.+|++++|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 44567788899999999999975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.6e-05 Score=86.42 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=66.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG~~ 278 (1043)
..++++|+.|+|||||++.|+..... ..|.+. .+..+.. ..+. .+.... ..++++|+||..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~--------~~g~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE--EEGAAK--------TGVVEVT-MERH-------PYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT--STTSCC--------CCC-----CCCE-------EEECSSCTTEEEEECCCGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc--cCceEE--------ECCeecc-eeEE-------eccccccCCeeehHhhccc
Confidence 36999999999999999999853211 011111 1100000 0111 111121 368999999963
Q ss_pred C---chHHHHHH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 D---FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 d---f~~e~~~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
. -..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|..
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 2 12233332 233455544 77654 46777777888888899999999998854
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.4e-06 Score=92.41 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-----------cchHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-----------VQSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++- -.......+.....
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 33444445566778899999999999999998888889999999999999872 11222333443332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.+.|+++|+||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 468999999999963
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-05 Score=84.50 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccch-hhhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSM-ELERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~-~~e~~~giTi~~~~-------------~~~~ 263 (1043)
.+.++++|+.|+||||++..|............+.+.+.... ..+.+ ......|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999744321111001111110000 00000 00111233222110 0012
Q ss_pred ecCeeEEEEcCCCCCC--chHHHH------HHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 264 WKDHNINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~d--f~~e~~------~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
++++.+.||||||... ....+. .....+|.+++|+|+..| .......+.... .+| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 3678999999999877 433332 245578999999999865 233333333332 577 678999999763
Q ss_pred CHHHHHHHHHHHhCCC
Q psy11896 335 DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~ 350 (1043)
.. .....+...++..
T Consensus 254 ~~-g~~~~~~~~~~~p 268 (297)
T 1j8m_F 254 KG-GGALSAVAATGAT 268 (297)
T ss_dssp TH-HHHHHHHHTTTCC
T ss_pred ch-HHHHHHHHHHCcC
Confidence 33 2334455555543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.9e-06 Score=87.51 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=56.0
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC---CHHHHHHHHH
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA---DPYRVINQMR 127 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~---~~~~~~~~l~ 127 (1043)
.+.++||+|....... .-...+..+.|+|+..+...... . ....++|.++|+||+|+... ...+..+.+.
T Consensus 120 d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~-~---~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 192 (226)
T 2hf9_A 120 DLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK-H---PGIMKTADLIVINKIDLADAVGADIKKMENDAK 192 (226)
T ss_dssp SEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT-C---HHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh-h---hhHhhcCCEEEEeccccCchhHHHHHHHHHHHH
Confidence 5777777774211100 01234556778886432211110 0 11136899999999998531 2222222221
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
. + ....+++++||++|.|++++++.+...+
T Consensus 193 ~-~--------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 193 R-I--------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp H-H--------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H-h--------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1 0 0123678999999999999999887544
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.3e-05 Score=93.37 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=61.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE---EecCeeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT---LWKDHNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDt 274 (1043)
++..|+|+|.+|+|||||+|+|+.....+. +.+. .++.|........ ...+..+.|+||
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~----~~~t--------------t~~~T~gi~~~~~~~~~~~~~~i~LiDT 98 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFS----LGST--------------VQSHTKGIWMWCVPHPKKPGHILVLLDT 98 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSC----CCCS--------------SSCCCCSEEEEEEECSSSTTCEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccc----cCCC--------------CCCceeEEEEeecccccCCCceEEEecC
Confidence 457899999999999999999985432221 0000 0111111111000 124678999999
Q ss_pred CCCCCchH------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc
Q psy11896 275 PGHVDFTV------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318 (1043)
Q Consensus 275 PG~~df~~------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~ 318 (1043)
||..+... ....++...-..++|+|+..++..+....+..+...
T Consensus 99 pGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 99 EGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp CCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred CCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 99765322 122223332223788898888888888777666543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-05 Score=89.69 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=53.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcchH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVDFT 64 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~~~ 64 (1043)
.+|+.|+ |.+++||+|.+...+.........|++|++++.+.+.+.+ .++.+|||||+....
T Consensus 22 ~~kvgIV-G~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIV-GLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEE-CCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3577778 9999999999777776666677889999999999888754 249999999998754
Q ss_pred H-------HHHHHhhhcCEEEEEEeCCC
Q psy11896 65 V-------EVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 65 ~-------~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+ .+..+++.+|++++|+|+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 4 67889999999999999874
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.8e-05 Score=83.81 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=62.3
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-----------CcchHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-----------GVQSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-----------g~~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-.......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4456666667788889999999999999999999999999999999999972 111222333433322
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 225 ~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred ccCCCeEEEEEECchhh
Confidence 468999999999974
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=76.05 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc-----CCCeEEEEeccCCCCCCHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~~~~~~ 340 (1043)
.+.+.+||||+.. ...+..++..+|.+++++.....- ..+...++.+.+. ++++.+|+|++|.......+..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~ 151 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLK 151 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHH
Confidence 5899999999976 466778889999999999998766 7777777777654 3577899999996533333444
Q ss_pred HHHHHHhCCC
Q psy11896 341 NQMRQKVGHN 350 (1043)
Q Consensus 341 ~~i~~~l~~~ 350 (1043)
+.+ +.++..
T Consensus 152 ~~l-~~~~~~ 160 (206)
T 4dzz_A 152 ESI-KDTGVK 160 (206)
T ss_dssp HHH-HHHTCC
T ss_pred HHH-HHcCCc
Confidence 433 335543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.59 E-value=5.2e-05 Score=83.53 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHH-HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTL-TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~-~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+.+||| +.+|..-...+++.+|++|+|+|+.+.. ..... ..+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888877778889999999999999754 22322 22334455789999999999986
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.6e-05 Score=84.32 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=60.6
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCC-------CCcc----hHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV-------GGVQ----SQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~-------~g~~----~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-. ......+.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445555566677889999999999999999888888999999999999765 2111 122333433322
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 231 ~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGTTCEEEEEEECHHHH
T ss_pred ccCCceEEEEEECchhh
Confidence 468999999999964
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=84.78 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=72.8
Q ss_pred cCeeEEEEeCCCCcc----hHHHHHHHh--hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCE-EEEEecCCCCCCCHH
Q psy11896 48 KDHNINIIDTPGHVD----FTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPY 120 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~----~~~~~~~~~--~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pi-ilvlNKiDl~~~~~~ 120 (1043)
.++.++||||||... +..++.... ..+|.+++|+|+..+.. .......+... +|+ ++|+||+|..... .
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~~-g 257 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAKG-G 257 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCCC-T
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccch-H
Confidence 677899999999873 333333222 27899999999987643 33334444332 685 8999999986432 2
Q ss_pred HHHHHHHHhhhhccccccccC--CCCccceeeeeeeecccCC-cchHHHHHHhh
Q psy11896 121 RVINQMRQKTSRWISNESLSE--HKPIEYIRNIGISAHIDSG-KTTLTERILFY 171 (1043)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~l~~--~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~ 171 (1043)
..++ +...++.-+...+... .....+.+.+++|+..|.| +++|++.+...
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2333 2223321111011111 1112345667899999999 99999999765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=80.01 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=44.4
Q ss_pred EcCCCCCC-chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 272 IDTPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 272 iDtPG~~d-f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
=+.|||.. ...++...+..+|+++.|+||..+.......+.+.+ .++|+++|+||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 35899974 667889999999999999999987766544444443 5789999999999863
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.41 E-value=2.4e-06 Score=96.88 Aligned_cols=123 Identities=8% Similarity=0.022 Sum_probs=71.7
Q ss_pred cceeeeeecccccccCCccccCC-------ChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch-------HHHHHH
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD-------SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF-------TVEVER 69 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d-------~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~-------~~~~~~ 69 (1043)
++.++ |.+++||+|...+.... .......||+|++.....+ +..+.++||||+.+. ......
T Consensus 162 ~i~~v-G~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 162 DVYVV-GCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp CEEEE-EBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred eEEEe-cCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34455 88999988874332221 2234677899988765443 224899999998642 222222
Q ss_pred H---hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhh
Q psy11896 70 A---LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKT 130 (1043)
Q Consensus 70 ~---~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~ 130 (1043)
. ....+.+++++|+...........+.++...++|+++++||+|.... +.+...+.+++.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred HhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 2 35678899999985322222222233445567899999999998653 3444555555554
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00029 Score=79.09 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=49.3
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-------C--c--chHHHHHHHHHHh----cCCCeEEEEecc
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------G--V--QSQTLTVNRQMKR----YDVPCIAFINKL 329 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-------g--~--~~~t~~~~~~~~~----~~~p~ivviNKi 329 (1043)
+...+.+|||+|+..|...+..+++.++++|+|+|.++ . . .......+..... .+.|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999861 1 1 1122233333322 468999999999
Q ss_pred CCC
Q psy11896 330 DRL 332 (1043)
Q Consensus 330 D~~ 332 (1043)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 963
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=81.04 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=66.4
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH--HHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP--YRVIN 124 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~--~~~~~ 124 (1043)
..+..+.|+||||..+-.. .....+|.+++|+|+..+... ..+...+ ..+|.++++||+|+..... ....+
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~--~~i~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDEL--QGIKKGI--FELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccH--HHHHHHH--hccccEEEEEchhccCchhHHHHHHH
Confidence 3578999999999975322 234789999999998643211 0010011 1246678889999753211 11122
Q ss_pred HHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 125 QMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 125 ~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+...+. . +.........+++++||+++.|+++|++.+.....
T Consensus 218 ~l~~a~~----l--~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 218 EYRAALH----I--LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHT----T--BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHH----h--ccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222111 0 00000001257889999999999999999987654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00062 Score=75.39 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=74.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhh---hcCceEe-eeeE----------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LER---QRGITIQ-SAAT----------Y 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~---~~giTi~-~~~~----------~ 261 (1043)
..+.++++|..|+||||++..|...........-+.+.+.+... .+... ... ..++.+- .... .
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 34679999999999999999987442211111111111110000 00000 000 2222222 1000 0
Q ss_pred E---EecCeeEEEEcCCCCCCchHHHHHHh------------HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEE
Q psy11896 262 T---LWKDHNINIIDTPGHVDFTVEVERAL------------RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAF 325 (1043)
Q Consensus 262 ~---~~~~~~i~liDtPG~~df~~e~~~~l------------~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivv 325 (1043)
+ ..+++.+.||||||...........+ ..+|.+++|+|+..+ ..+....+.. ....+ .-++
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~-~~~~~i~GvV 260 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEF-SKVADVSGII 260 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHH-TTTSCCCEEE
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHH-hhcCCCcEEE
Confidence 0 01468999999999765433332222 137899999999865 2222222221 12243 3478
Q ss_pred EeccCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 326 INKLDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 326 iNKiD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
+||+|.... . ..+..+...++..+
T Consensus 261 ltk~d~~~~-~-g~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 261 LTKMDSTSK-G-GIGLAIKELLNIPI 284 (320)
T ss_dssp EECGGGCSC-T-THHHHHHHHHCCCE
T ss_pred EeCCCCCCc-h-hHHHHHHHHHCcCE
Confidence 999997532 2 23445555666543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00091 Score=75.72 Aligned_cols=63 Identities=17% Similarity=0.034 Sum_probs=40.6
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+.-+++| +.+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 34445554 677888887778999999999999975543322233322 3789999999999874
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00039 Score=72.14 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=59.3
Q ss_pred cCeeEEEEcCCCC-CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEeccCCCC-CCHHHHHH
Q psy11896 265 KDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDRLG-ADPYRVIN 341 (1043)
Q Consensus 265 ~~~~i~liDtPG~-~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~-~~~~~~~~ 341 (1043)
+.+.+.+||||+. .. ..+..++..+|.+|+++.+...-...+...++.+.. .+.+..+|+|+.|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 4688999999997 44 345678899999999999876555556666666665 3678889999999765 33344445
Q ss_pred HHHHHhCCC
Q psy11896 342 QMRQKVGHN 350 (1043)
Q Consensus 342 ~i~~~l~~~ 350 (1043)
.+++ ++..
T Consensus 144 ~l~~-~g~~ 151 (209)
T 3cwq_A 144 LLTT-AGLP 151 (209)
T ss_dssp HHHH-TTCC
T ss_pred HHHH-cCCc
Confidence 5544 5543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00076 Score=78.06 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhhhcCceEeeeeEEE-------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LERQRGITIQSAATYT------------- 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~~~giTi~~~~~~~------------- 262 (1043)
.-..++|+|..|+|||||+..|............+.+++.+... .+.+. ....+++.+.......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 34679999999999999999998542111100112222211000 00000 0112333322211000
Q ss_pred EecCeeEEEEcCCCCCCchHHH-------HHHhH-----hcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEecc
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEV-------ERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKL 329 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~-------~~~l~-----~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKi 329 (1043)
...++.+.||||+|........ .+..+ ..+-+++|+|+..|.. ....++.... .+ ...+++||+
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~-itgvIlTKL 448 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVG-LTGITLTKL 448 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTC-CSEEEEECG
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcC-CCEEEEEcC
Confidence 0146789999999975432221 22222 2456899999987732 2222333322 23 345789999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCc
Q psy11896 330 DRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 330 D~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
|-. +.. ..+-.+...++..+
T Consensus 449 D~t-akg-G~~lsi~~~~~~PI 468 (503)
T 2yhs_A 449 DGT-AKG-GVIFSVADQFGIPI 468 (503)
T ss_dssp GGC-SCC-THHHHHHHHHCCCE
T ss_pred CCc-ccc-cHHHHHHHHHCCCE
Confidence 964 222 23444555555433
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00044 Score=78.55 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=60.4
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC----------Ccc-hHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----------GVQ-SQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~----------g~~-~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ --. ......+.....
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3334444455677788999999999999999999999999999999999986 111 122233333332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 367999999999963
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00066 Score=77.78 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=76.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccchh-hhhhcCceEeeeeE-----E--------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSME-LERQRGITIQSAAT-----Y--------T 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~~-~e~~~giTi~~~~~-----~--------~ 262 (1043)
..+.++++|+.|+||||++..|............+.+.+.+.. ..+.+. .....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999854322111111111111000 000000 01122332221100 0 0
Q ss_pred EecCeeEEEEcCCCCCCchHHHHH------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEVER------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~~~------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
..+++.+.||||||.......... ....+|.+++|+|+..| .......+... ..++ .-+++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCcc-c
Confidence 125788999999996554322221 12358999999999865 22222222222 2344 567899999753 2
Q ss_pred HHHHHHHHHHHhCCCc
Q psy11896 336 PYRVINQMRQKVGHNA 351 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~ 351 (1043)
.. ....+....+..+
T Consensus 253 ~g-~alsi~~~~g~PI 267 (425)
T 2ffh_A 253 GG-AALSARHVTGKPI 267 (425)
T ss_dssp CH-HHHHHHHHHCCCE
T ss_pred HH-HHHHHHHHHCCCE
Confidence 22 2334555566543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00086 Score=76.57 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=66.2
Q ss_pred cceeeeeecccccccCCccccCC---Chh-hhhhcCCccccceEEEEecCe--eEEEEeCCCCcch--------------
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD---SME-LERQRGITIQSAATYTLWKDH--NINIIDTPGHVDF-------------- 63 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d---~~~-~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~-------------- 63 (1043)
++-|+ |-+++||+|.......- ..+ ....++.++......+...+. .++++|+||+...
T Consensus 44 ~vaLv-G~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 44 NILCV-GETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEE-CSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 35556 99999999984332221 111 122356665544334443332 6899999998642
Q ss_pred HHHHHHHhh-------------hc--C-EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 64 TVEVERALR-------------VL--D-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 64 ~~~~~~~~~-------------~a--D-~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
...+..++. ++ | +++||+|+..++...+.++++.+. .++|+|+|+||+|...
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 112222221 12 2 577888998889999988888886 6889999999999875
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=64.72 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHh----cCCCeEEEEecc-CCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKR----YDVPCIAFINKL-DRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~----~~~p~ivviNKi-D~~~ 333 (1043)
|+..+...+..++..+|++|+|||+.+.-......-+ ..+.. .+.|++|+.||. |..+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 6667777789999999999999999865222233222 22221 467999999996 6654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00047 Score=74.14 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCCCCc-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDF-TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
-|||... ..++...+..+|.++.|+||..+.......+- .+ ++|+++|+||+|+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 4999765 46888999999999999999987655432222 22 899999999999873
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0034 Score=75.83 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=41.1
Q ss_pred CeeEEEEcCCCCCCc---------hHHHHHH----hHh-cCeEEEEEeCCCCcc-hHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 266 DHNINIIDTPGHVDF---------TVEVERA----LRV-LDGAILVLCAVGGVQ-SQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 266 ~~~i~liDtPG~~df---------~~e~~~~----l~~-~D~~ilVvda~~g~~-~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
...+.|+|.||...- ...+... +.. ...+++++++..... .....+++.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 457999999985431 1122222 222 245666777654433 2334555666667889999999999
Q ss_pred CCCC
Q psy11896 331 RLGA 334 (1043)
Q Consensus 331 ~~~~ 334 (1043)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9743
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0029 Score=67.91 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=51.1
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCC
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDR 331 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 331 (1043)
+.+.+.|||||+..........++..+|.+|+|+.........+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56899999999976543223334457899999999887666667777777777888987 89999874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=73.25 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=74.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cch-hhhhhcCceEeeeeEEE-------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSM-ELERQRGITIQSAATYT------------- 262 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~-~~e~~~giTi~~~~~~~------------- 262 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ +.. +.. ......|+.+.......
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~-r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF-RAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS-STTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc-ccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3579999999999999999998542111100011111100 000 000 00122333221111000
Q ss_pred EecCeeEEEEcCCCCCC----chHHHHHH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCH
Q psy11896 263 LWKDHNINIIDTPGHVD----FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP 336 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~d----f~~e~~~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 336 (1043)
...++.+.++||+|... +..++... .-..|-.++++|+..|. +.....+...+.--...+++||+|... ..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~a-~~ 284 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDADA-RG 284 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGCS-CC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCcc-ch
Confidence 01356778899999643 33333221 13478899999988763 333334433333334588999999742 33
Q ss_pred HHHHHHHHHHhCCCc
Q psy11896 337 YRVINQMRQKVGHNA 351 (1043)
Q Consensus 337 ~~~~~~i~~~l~~~~ 351 (1043)
... -.+....+..+
T Consensus 285 G~~-l~~~~~~~~pi 298 (328)
T 3e70_C 285 GAA-LSISYVIDAPI 298 (328)
T ss_dssp HHH-HHHHHHHTCCE
T ss_pred hHH-HHHHHHHCCCE
Confidence 233 34445555443
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00088 Score=81.01 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=34.0
Q ss_pred hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCC
Q psy11896 290 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRL 332 (1043)
Q Consensus 290 ~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~ 332 (1043)
.+|.+++|+.+.......+...+..+.+.++++ -+|+|+++..
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 458899998877666667778888888888875 5889999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0024 Score=70.12 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=74.1
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccch-hhhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSM-ELERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~-~~e~~~giTi~~~~-------------~~~~ 263 (1043)
...++++|+.|+||||++..|............+.+.+.+. ...+.. ..-...|+.+.... ....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 46799999999999999999975421111100111111100 000000 00012233221110 0001
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
..++.+.++||||.......+.. .+ ..+|.+++|+|+..+ .......+...+.--..-+++||+|.
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDG 261 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 24678999999997544433322 11 137888999999744 12222222222222234577899997
Q ss_pred CCCCHHHHHHHHHHHhCCCce
Q psy11896 332 LGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 332 ~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
.. .... +.++...++..+.
T Consensus 262 ~~-~gG~-~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 262 TA-KGGI-TLAIARELGIPIK 280 (306)
T ss_dssp CS-CTTH-HHHHHHHHCCCEE
T ss_pred cc-chHH-HHHHHHHHCCCEE
Confidence 52 2222 4556666665443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=75.36 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=67.5
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcc--
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVD-- 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~-- 62 (1043)
.++-++ |..++||+|.+...+.... .....|++|++++.+.+.+.+ ..+.+|||||+..
T Consensus 21 ~~vgiV-G~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 21 LKTGIV-GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CEEEEE-ECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 355566 9999999999776666555 677889999999999998876 4689999999753
Q ss_pred -----hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 63 -----FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 63 -----~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+...+...++.+|++++|+|+..
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55678888999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0031 Score=69.23 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHhHhcCeEEEEEeCCCCc-chHH-HHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 286 RALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 286 ~~l~~~D~~ilVvda~~g~-~~~t-~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+++.+|++++|+|+.+.. .... ...+..+...++|+++|+||+|+..
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 4678999999999999753 3332 2334455668999999999999863
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0018 Score=68.77 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=60.1
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i 343 (1043)
+.+.+.+||||+.... .+..++..+|.+++|+.+...-...+..+.+.+...+++ +.+++||.+. ....+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5789999999986543 456678999999999998754444555566666667765 6789999983 2346677
Q ss_pred HHHhCCCceeeeec
Q psy11896 344 RQKVGHNAAFLQIP 357 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p 357 (1043)
.+.++.......+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 78777433333333
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0034 Score=68.60 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccch-hhhhhcCceEeeee-----EE--------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSM-ELERQRGITIQSAA-----TY--------T 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~-~~e~~~giTi~~~~-----~~--------~ 262 (1043)
.-+.++++|+.|+||||++..|............+.+.+.... ..... ......|+.+.... .. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998744221111001111110000 00000 00111233222110 00 0
Q ss_pred EecCeeEEEEcCCCCCCchHHHHH----Hh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEVER----AL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~~~----~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
...++.+.|+||||.......... .. ..+|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 014689999999986543222222 21 258899999998754 222222332222 244 457899999763 2
Q ss_pred HHHHHHHHHHHhCCCc
Q psy11896 336 PYRVINQMRQKVGHNA 351 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~ 351 (1043)
... .-.+....+..+
T Consensus 253 ~g~-~~~~~~~~~~pi 267 (295)
T 1ls1_A 253 GGA-ALSARHVTGKPI 267 (295)
T ss_dssp CHH-HHHHHHHHCCCE
T ss_pred HHH-HHHHHHHHCcCE
Confidence 223 334555566543
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.003 Score=69.15 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=57.3
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh------cCCCeE-EEEeccCCCCCCHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPYR 338 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~------~~~p~i-vviNKiD~~~~~~~~ 338 (1043)
.+.+.|||||+.... ....++..+|.+|+++.+...-...+...++.+.. .+++++ +|+|+.|.......+
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 231 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKS 231 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHH
Confidence 578999999997543 34567778999999999876554455555444433 366744 889999976433446
Q ss_pred HHHHHHHHhCC
Q psy11896 339 VINQMRQKVGH 349 (1043)
Q Consensus 339 ~~~~i~~~l~~ 349 (1043)
.++++.+.++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 67778887764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0031 Score=69.16 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhhhcCceEeeeeEE----------E---E
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LERQRGITIQSAATY----------T---L 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~~~giTi~~~~~~----------~---~ 263 (1043)
-..++++|+.|||||||+..|............+.+.+.+..- .+... ....+++.+...... + .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998542211111112222110000 00000 001122222111000 0 1
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH-------H----h-HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEeccC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER-------A----L-RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINKLD 330 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~-------~----l-~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNKiD 330 (1043)
..++.+.++||+|..+....... + + ...+.+++++|+..+.. ....++... ..+ ..++++||.|
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-~t~iivTh~d 258 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-LTGVIVTKLD 258 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-CSEEEEECTT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-CcEEEEECCc
Confidence 13456789999996543322211 1 1 23677889999987643 223333333 234 3678899998
Q ss_pred CCCCCHHHHHHHHHHHhCCCce
Q psy11896 331 RLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 331 ~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
... .. ..+-.+...++..+.
T Consensus 259 ~~a-~g-g~~l~i~~~~~~pi~ 278 (304)
T 1rj9_A 259 GTA-KG-GVLIPIVRTLKVPIK 278 (304)
T ss_dssp SSC-CC-TTHHHHHHHHCCCEE
T ss_pred ccc-cc-cHHHHHHHHHCCCeE
Confidence 752 22 223355555665443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.009 Score=65.25 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=71.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCC-ce-eeeeecCCcccc-ccccchhh-hhhcCceEeeee-------EEEEecCe
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGR-IS-EMHEVRGKDNVG-AVMDSMEL-ERQRGITIQSAA-------TYTLWKDH 267 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~-~~-~~~~v~~~~~~~-~~~d~~~~-e~~~giTi~~~~-------~~~~~~~~ 267 (1043)
-+.++++|+.|+||||++..|...... -. +..-++ .+.+. ...+.... ....|+...... .-....++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~-~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT-TDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE-CCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe-cCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 357999999999999999999743211 11 111111 11100 00000000 011122111000 00012568
Q ss_pred eEEEEcCCCCCCchHHHH----HHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcC-C-CeEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVE----RALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYD-V-PCIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~----~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~-p~ivviNKiD~~~~~~~~~ 339 (1043)
.+.|+||||......... ..+. ..|.+++|+|+..+.. .+.+.+.... + ..-+++||+|... ... .
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~~-~~g-~ 257 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDETT-SLG-S 257 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTCS-CCH-H
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCccc-chh-H
Confidence 999999999765443322 2222 3577899999987531 1222222222 2 2346779999763 222 3
Q ss_pred HHHHHHHhCC
Q psy11896 340 INQMRQKVGH 349 (1043)
Q Consensus 340 ~~~i~~~l~~ 349 (1043)
+..+...++.
T Consensus 258 ~~~~~~~~~~ 267 (296)
T 2px0_A 258 VFNILAESKI 267 (296)
T ss_dssp HHHHHHTCSC
T ss_pred HHHHHHHHCc
Confidence 3344444553
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.016 Score=62.02 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=41.0
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHH---H-hcCCCeEEEEec-cCCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQM---K-RYDVPCIAFINK-LDRLGA 334 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~---~-~~~~p~ivviNK-iD~~~~ 334 (1043)
.|+..+...+..++..+|++|+|||+.+.-......-+ ..+ . ..+.|++|+.|| -|..++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 46788888999999999999999999864321122211 222 1 258899999997 477643
|
| >2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.019 Score=57.37 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=93.3
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
-+.||.+.+.++ +-.+--..+-+..|-..|.++|+.++...-..++..+.+.|+...+|.|...|.+.. .|++.+..+
T Consensus 82 ~l~nv~vVVtRy-fGGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~ 159 (191)
T 2cve_A 82 GLDRVAVLVVRY-FGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTP 159 (191)
T ss_dssp TBCSEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEET
T ss_pred CCCcEEEEEEEE-eCCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcC
Confidence 478888888875 212223467889999999999999999999999999999999999999999999988 999888865
Q ss_pred CcEEEEEEechhhhcCchHHHHhhcCCceEE
Q psy11896 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003 (1043)
Q Consensus 973 ~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~ 1003 (1043)
.-..+...+|..+.-.|...|+..|+|++.+
T Consensus 160 ~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 160 EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 3378889999999889999999999999854
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0058 Score=70.35 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=70.9
Q ss_pred cCeeEEEEeCCCCcchHHHHHHH---h---hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCC-C-EEEEEecCCCCCCCH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERA---L---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-P-CIAFINKLDRLGADP 119 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~---~---~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~-p-iilvlNKiDl~~~~~ 119 (1043)
.++.+.|+||||........... + ..+|.+++|+|+..+. ........+. ..+ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc-ch
Confidence 56789999999987533222221 2 2589999999997653 2222233332 236 6 889999999853 22
Q ss_pred HHHHHHHHHhhhhccccccccC--CCCccceeeeeeeecccCC-cchHHHHHHhhcc
Q psy11896 120 YRVINQMRQKTSRWISNESLSE--HKPIEYIRNIGISAHIDSG-KTTLTERILFYTG 173 (1043)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~l~~--~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~l~ 173 (1043)
...++ +...++.-+...+... .....|.+..++|+..|.| +..|++.+....+
T Consensus 255 g~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 255 GGALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp HHHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred HHHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 3333322111111111 1112455667899999999 8888887765543
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.02 Score=52.09 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=47.7
Q ss_pred ccEEEEEEecCeecCCCEEEecCCC-cEEEeceEEEeccCCeeecCeecCCCEEEE--ccC--ccccCcEEe
Q psy11896 515 GQLTYMRCYQGKLRKGEMIYNVRTD-KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--DCASGDTFV 581 (1043)
Q Consensus 515 G~i~~~RV~sGtl~~gd~v~~~~~~-~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~Gdtl~ 581 (1043)
|.+..+||.+|+|++|+.| +.+ ...+|.+|. .+.+++++|.+||-|++ .|. +...||+|.
T Consensus 48 gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE----~~~e~v~eA~~GdnVai~Ikg~~~~I~~GdVLy 112 (116)
T 1xe1_A 48 KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIE----RNREKVEFAIAGDRIGISIEGKIGKVKKGDVLE 112 (116)
T ss_dssp EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEE----ETTEEESEEETTCEEEEEEESCCCCCCTTCEEE
T ss_pred CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEE----ECCcCcCCcCCCCEEEEEEECCccccCCCcEEE
Confidence 7789999999999999999 333 456677776 45678999999999985 454 567788876
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0059 Score=65.59 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=48.6
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCC
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRL 332 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~ 332 (1043)
+.+.+.+||||+.. ...+..++..+|.+|+++.....-......+.+.+... +.++.+|+|+.+..
T Consensus 143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 35789999999965 34567788899999999998754444445555555555 45788999999544
|
| >1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.017 Score=58.93 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
-+.||.+.+.++ +-.+--..+-+..|-..|.++|+.++...-..++..+.|.|+...+|.|...|.+..+.|++.+..+
T Consensus 94 ~l~nv~vVVtRy-fGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~ 172 (217)
T 1vi7_A 94 GVGEITAVVVRY-YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQA 172 (217)
T ss_dssp TCCSEEEECCEE-CCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCCCEEEEEEEE-eCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEecC
Confidence 377888887775 2222335678999999999999999999999999999999999999999999999999999998864
Q ss_pred CcEEEEEEechhhhcCchHHHHhhcCCceEE
Q psy11896 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003 (1043)
Q Consensus 973 ~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~ 1003 (1043)
...+...+|..+.-.|...|+..|+|++.+
T Consensus 173 -~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 173 -FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp -SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred -CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 477888999998888999999999999853
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.015 Score=66.39 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=91.3
Q ss_pred eeeeeecccccccCCccccCCChhhhh-----hcCCccccceEEEEecCe-eEEEEeCCCCcc---hHHHHHHH--hhhc
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELER-----QRGITIQSAATYTLWKDH-NINIIDTPGHVD---FTVEVERA--LRVL 74 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~-----~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~---~~~~~~~~--~~~a 74 (1043)
..+.|..++||+|.......-..+.+- ...+|+. ...+..... +++++|+||+.. ....+... +...
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 334499999999984433331111110 0112221 122232222 689999999853 12233332 3344
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC---------CC-CHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL---------GA-DPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~---------~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|..++ +++.. .+.+...+.+.+...++|+++|+||.|+. +. ...++.+.+.+.....+.. ..
T Consensus 150 ~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~------~g 221 (413)
T 1tq4_A 150 DFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE------NG 221 (413)
T ss_dssp SEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH------TT
T ss_pred CCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh------cC
Confidence 66665 78754 56778888888888899999999999963 11 2333444443321100000 00
Q ss_pred ccceeeeeeee--cccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISA--HIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa--~~g~Gi~~L~~~l~~~l~~ 174 (1043)
..+..++++|+ .++.|+++|.+.+...+++
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 12346789999 6777899999999888875
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.013 Score=67.39 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.++--|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35678999999999999999999865
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0025 Score=69.40 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=52.0
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC----CcchHHHH-------------HH--HHHH----hcC-CC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQSQTLT-------------VN--RQMK----RYD-VP 321 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~----g~~~~t~~-------------~~--~~~~----~~~-~p 321 (1043)
.+.+.|||||+.. ...+..++..+|.+|+++.... ++..-... +| +.+. ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 5677888999999999998862 11111111 21 2222 224 66
Q ss_pred eEEEEeccCCCC-CCHHHHHHHHHH---HhCC
Q psy11896 322 CIAFINKLDRLG-ADPYRVINQMRQ---KVGH 349 (1043)
Q Consensus 322 ~ivviNKiD~~~-~~~~~~~~~i~~---~l~~ 349 (1043)
+.+|+|+.|... ....+..+.+.+ +++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 789999999765 334444444444 3664
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.015 Score=61.94 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcC---------CCeEEEEeccCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD---------VPCIAFINKLDR 331 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~---------~p~ivviNKiD~ 331 (1043)
.+.+.+||||+... ..+..++..+|.+|+|+++...-...+...++.+...+ ....+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68999999999544 57778889999999999987544445555555554433 456799999984
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.07 Score=61.11 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=43.6
Q ss_pred cCeeEEEEeCCCCcc----hHHHHH--HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 48 KDHNINIIDTPGHVD----FTVEVE--RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~----~~~~~~--~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
.++.+.|+||||... +..+.. .....+|.++||+|+..+ .........+.....+..+|+||+|...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 357899999999753 222222 223357999999999864 2333344444444445779999999853
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.019 Score=61.86 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.9
Q ss_pred cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 74 LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 74 aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
++++++++|.. .++...+..+++.+... +++|+|+||+|...
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 57889999954 78888998888888776 89999999999875
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.044 Score=59.93 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=73.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cchhh-hhhcCceEeeeeEE-EE-----------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSMEL-ERQRGITIQSAATY-TL----------- 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~~~-e~~~giTi~~~~~~-~~----------- 263 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ ... +.... ....++.+...... ..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~-r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS-CHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc-chhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 3579999999999999999998542111100011221110 000 00000 01223433222111 00
Q ss_pred --ecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEec
Q psy11896 264 --WKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINK 328 (1043)
Q Consensus 264 --~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNK 328 (1043)
..+....++||.|...+...... ++ ...+-+++|+|+..|...... .+... ..++ .+++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeC
Confidence 12345779999997654332211 11 235566999998877655543 23333 3344 5678899
Q ss_pred cCCCCCCHHHHHHHHHHHhCCC
Q psy11896 329 LDRLGADPYRVINQMRQKVGHN 350 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~ 350 (1043)
+|-. +.....+ .+...++..
T Consensus 256 lD~~-~~~g~~l-~~~~~~~~p 275 (302)
T 3b9q_A 256 LDGS-ARGGCVV-SVVEELGIP 275 (302)
T ss_dssp CSSC-SCTHHHH-HHHHHHCCC
T ss_pred CCCC-CccChhe-ehHHHHCCC
Confidence 9875 3333333 344445543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.89 E-value=0.1 Score=56.74 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred cCeeEEEEeCCCCcc--hHHHHH------HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCC
Q psy11896 48 KDHNINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRL 115 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~--~~~~~~------~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~ 115 (1043)
.++.+.|+||||... ...... .....+|.+++|+|+..+ .......+.+.. ..| ..+|+||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 567899999999877 432222 245578999999998753 333333443333 467 77999999975
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.061 Score=60.12 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=72.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cchhh-hhhcCceEeeeeEE-E------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSMEL-ERQRGITIQSAATY-T------------ 262 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~~~-e~~~giTi~~~~~~-~------------ 262 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ +.. +.... ....++.+...... .
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~-r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS-CHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc-ccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 4579999999999999999998542211100011221110 000 00000 01223332211100 0
Q ss_pred -EecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEec
Q psy11896 263 -LWKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINK 328 (1043)
Q Consensus 263 -~~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNK 328 (1043)
...++...++||.|...+...... ++ ...+-+++|+|+..|...... .+... ..++ .+++++|
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iiiTh 312 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 312 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEES
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEEec
Confidence 012445789999997654332211 11 235566999998877655433 22222 2343 5678999
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 329 LDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
+|-. +..-..+ .+...++..+
T Consensus 313 lD~~-~~gG~~l-si~~~~~~pI 333 (359)
T 2og2_A 313 LDGS-ARGGCVV-SVVEELGIPV 333 (359)
T ss_dssp CTTC-SCTHHHH-HHHHHHCCCE
T ss_pred Cccc-ccccHHH-HHHHHhCCCE
Confidence 9865 3333333 3444455433
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.1 Score=55.44 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=56.2
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh------cCCCeE-EEEeccCCCCCCHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 337 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~------~~~p~i-vviNKiD~~~~~~~ 337 (1043)
..+.+.+||||+... .....++..+|.+|+++.+...-...+...++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 468899999999754 345667889999999999875433333333333322 256664 89999987543345
Q ss_pred HHHHHHHHHhCCC
Q psy11896 338 RVINQMRQKVGHN 350 (1043)
Q Consensus 338 ~~~~~i~~~l~~~ 350 (1043)
+..+.+.+.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677777777643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.14 Score=58.50 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=43.6
Q ss_pred cCeeEEEEeCCCCcc------hHHHHHHHhh--hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 48 KDHNINIIDTPGHVD------FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~------~~~~~~~~~~--~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.++.+.|+||||... +..++....+ ..|.++||+|+..+ .........+.+.-.+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccc
Confidence 367899999999644 3444333222 45899999999854 223334444444445688999999975
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.1 Score=55.64 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=51.0
Q ss_pred CeeEEEEcCCCCCCchHH-HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh----cCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e-~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~----~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.+|||||......- .......+|.+|+++.+...-...+....+.+.. .+++. -+|+|+.+... ..+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHHH
Confidence 588999999996432111 1112257999999998864333333333444332 25564 58899987432 2466
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
.+.+.+.++...
T Consensus 193 ~~~l~~~~~~~v 204 (269)
T 1cp2_A 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHcCCcc
Confidence 777877777543
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.015 Score=63.49 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=37.9
Q ss_pred cccceeeccccccccccchhhhhhcccceecccCCC-CCceeeeh
Q psy11896 795 LEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWVTIYA 838 (1043)
Q Consensus 795 lEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~-~~~~~~~~ 838 (1043)
+||++.++|.+|++|+|.|+++|++|||.+..++.. ++|..+.+
T Consensus 124 lEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~ 168 (332)
T 3e3x_A 124 MEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDF 168 (332)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEE
T ss_pred ECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEE
Confidence 059999999999999999999999999999998766 46766654
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.14 Score=55.33 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=50.5
Q ss_pred CeeEEEEcCCCCCCchHH-HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh----cCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e-~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~----~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.||||||......- .......+|.+++++.+...-...+..+.+.+.. .+.++ -+|+|+.+.. ...+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHHH
Confidence 689999999996432111 1122357999999998764333333333333322 35664 5788998642 33566
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
++.+.+.++...
T Consensus 196 ~~~l~~~~g~~~ 207 (289)
T 2afh_E 196 IIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHTSCE
T ss_pred HHHHHHHcCccc
Confidence 777877777543
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.18 Score=53.58 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=58.6
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i 343 (1043)
+.+.+.+||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+. -+|+|+.|.... ...++.+
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHH
Confidence 357899999998655 66777889999999999887554455666666666666654 488999996532 2456667
Q ss_pred HHHhCCC
Q psy11896 344 RQKVGHN 350 (1043)
Q Consensus 344 ~~~l~~~ 350 (1043)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 6666643
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.36 Score=42.60 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=57.8
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcE---EEeceEEEeccCCeeecCeecCCCEEEEc--cC-ccccCc
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV-DCASGD 578 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~---~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~Gd 578 (1043)
|-+++..+. |.+|=++|.+|.++.+..+.+.+.+.- -++.+|- +...+|+++.+|.=|+|. +. |.+.||
T Consensus 11 Vr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~~~~dik~GD 86 (99)
T 1d1n_A 11 VRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKEGD 86 (99)
T ss_dssp ECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSSCS
T ss_pred EEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc----ccccccceECCCcEEEEEEcCcCCCCCCC
Confidence 444444445 999999999999999999999988743 3677776 667789999999999874 44 788999
Q ss_pred EEe
Q psy11896 579 TFV 581 (1043)
Q Consensus 579 tl~ 581 (1043)
.|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.028 Score=66.87 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=55.8
Q ss_pred eeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-------cCeeEEEEeCCCCcchHH------HHHHHhhh
Q psy11896 7 IIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTV------EVERALRV 73 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-------~~~~i~liDTPG~~~~~~------~~~~~~~~ 73 (1043)
.+.|-+++||++.+-+...... .-..+|+|++...+.+.| .+..+.|+||||+.+... ...-++..
T Consensus 42 aivG~pnvGKStLiN~L~g~~~-~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~ 120 (592)
T 1f5n_A 42 AIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAV 120 (592)
T ss_dssp EEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHhHcCCCC-ccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHH
Confidence 3449999999887444433321 115677777766666554 467899999999974221 11111111
Q ss_pred --cCEEEEEEeCCCCCchhHHHHHHHHHh
Q psy11896 74 --LDGAILVLCAVGGVQSQTLTVNRQMKR 100 (1043)
Q Consensus 74 --aD~iIlVvDa~~~~~~~~~~~~~~l~~ 100 (1043)
++ ++|+|+..++..++..++..+..
T Consensus 121 llss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 121 LLSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 33 67778777788888776665544
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.25 Score=50.06 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=48.5
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-----CCCEEEEEecCCCC
Q psy11896 49 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFINKLDRL 115 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-----~~piilvlNKiDl~ 115 (1043)
.+.+.|+|||+.. .......+..+|.+|++++....- .......+.+... +.++.+|+||+|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4679999999876 345667788899999999987654 5555566666544 35778999999954
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.22 Score=51.91 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMR 344 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~ 344 (1043)
.+.+.+||||+... ..+..++..+|.+|+|+.+...-...+...++.+.+.+.+ .-+|+|+.|..... ..++.+.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 186 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAE 186 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHH
Confidence 57899999999654 5677788999999999988765455566666666666665 45889999975432 2345555
Q ss_pred HHhCCC
Q psy11896 345 QKVGHN 350 (1043)
Q Consensus 345 ~~l~~~ 350 (1043)
+.++..
T Consensus 187 ~~~~~~ 192 (237)
T 1g3q_A 187 DVMEVP 192 (237)
T ss_dssp HHHCSC
T ss_pred HHhCcc
Confidence 666643
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.33 Score=51.60 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=47.0
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCC
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDR 114 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl 114 (1043)
..+.+.|+|||+...........+..+|.+|+|+.............++.+...+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46789999999876433222233446899999998775443444555666777788977 99999984
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=91.80 E-value=0.33 Score=54.04 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=29.5
Q ss_pred hHhcCeEEEEEeCCCCcchHHHHH---HHHHHhcCCCeEEEEeccCCCC
Q psy11896 288 LRVLDGAILVLCAVGGVQSQTLTV---NRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 288 l~~~D~~ilVvda~~g~~~~t~~~---~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+..+|.+++| ||.... .....+ +..+...++|+++|+||+|+..
T Consensus 128 ~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 4678888865 555432 222233 3344568999999999999874
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.68 Score=51.51 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=47.4
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCC-C---------HHHHHHHHHHHhCCCceeeeecc
Q psy11896 291 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA-D---------PYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 291 ~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~-~---------~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
.+++++|.-...-....+...+..+.+.++|+. +|+|++..... . +...++++.+.++... ...+|+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 477888888887777788888999999999985 78899987532 1 3445667777775432 234443
|
| >3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.11 Score=43.88 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=54.1
Q ss_pred EEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceE
Q psy11896 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGE 1002 (1043)
Q Consensus 940 ~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~ 1002 (1043)
....+.|+...+|+|...|.+..+.|.+.+..+. ..+...+|..+.-.|...|+.+|+|++.
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~-V~l~v~vp~~~~~~~~~~L~d~t~G~~~ 69 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQAF-VLLRVALPAAKVAEFSAKLADFSGGSLQ 69 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEE-EEEEEEECC-CC-CHHHHHHHHHTTCCC
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccCe-EEEEEEECHHHHHHHHHHHHHHhCCEEE
Confidence 3567899999999999999999999999998544 8899999999999999999999999974
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=90.90 E-value=1.1 Score=45.87 Aligned_cols=87 Identities=8% Similarity=0.048 Sum_probs=56.4
Q ss_pred cCeeEEEEcCCCCCCc--hH--HHHHHhHh-cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHH
Q psy11896 265 KDHNINIIDTPGHVDF--TV--EVERALRV-LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYR 338 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df--~~--e~~~~l~~-~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~ 338 (1043)
+++.+.+|||||...- .. ........ .+.+|+|+.+..+-..++...++.+...+++++ +|+|+.|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3578999999986431 10 11111122 245888888865555556666676777788865 789999976444567
Q ss_pred HHHHHHHHhCCCc
Q psy11896 339 VINQMRQKVGHNA 351 (1043)
Q Consensus 339 ~~~~i~~~l~~~~ 351 (1043)
..+.+.+.++...
T Consensus 187 ~~~~l~~~~~~~v 199 (224)
T 1byi_A 187 YMTTLTRMIPAPL 199 (224)
T ss_dssp HHHHHHHHSSSCE
T ss_pred HHHHHHHHcCCCE
Confidence 7788888777544
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=90.51 E-value=0.82 Score=50.27 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=42.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCC-C---------HHHHHHHHHHHhCC
Q psy11896 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA-D---------PYRVINQMRQKVGH 349 (1043)
Q Consensus 292 D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~-~---------~~~~~~~i~~~l~~ 349 (1043)
+++++|+-+..-....+...+..+.+.++|+. +|+|++..... . +.+.++++.+.++.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 291 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSD 291 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 48888888877677788888999999999985 78899986532 1 23456667776653
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.19 Score=54.75 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=55.8
Q ss_pred cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccc
Q psy11896 101 YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 180 (1043)
Q Consensus 101 ~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~ 180 (1043)
.+.|+ ++++|-|.+. +..++..++. ..+++.++..+..++..|...+...+.+....+.
T Consensus 79 ~~~P~-IIltrg~~~p---eelie~A~~~-----------------~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~ 137 (314)
T 1ko7_A 79 PETPA-IIVTRDLEPP---EELIEAAKEH-----------------ETPLITSKIATTQLMSRLTTFLEHELARTTSLHG 137 (314)
T ss_dssp TTCCC-EEECTTCCCC---HHHHHHHHHT-----------------TCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCE-EEEeCCCCCC---HHHHHHHHHC-----------------CCeEEEECCchhHHHHHHHHHHHHhhccceeeeE
Confidence 45666 6678888762 3333333321 2467778888888888887777665443222211
Q ss_pred cccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 181 TSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.. . .. .-+-+++.|+.|+||||++..|+..
T Consensus 138 ~~-v----------~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 138 VL-V----------DV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EE-E----------EE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EE-E----------EE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 11 0 00 1256999999999999999999854
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.44 Score=48.76 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=46.7
Q ss_pred cCeeEEEEeCCCC-cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-CCCEEEEEecCCCCC
Q psy11896 48 KDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPCIAFINKLDRLG 116 (1043)
Q Consensus 48 ~~~~i~liDTPG~-~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-~~piilvlNKiDl~~ 116 (1043)
..+.+.++|||+. ... .+...+..+|.+|++++....-.......++.+... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 3567999999987 443 344577889999999987632223334455556553 678889999999653
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.51 Score=50.54 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=51.3
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 333 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~ 333 (1043)
.+.+.|||||+..... +.......+|.+|+|+.+...-........+.+...+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4789999999975543 23334578999999999988777777777888887888877 8899999653
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.81 Score=48.32 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=49.6
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHh------cCCCEE-EEEecCCCCCCCHH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 120 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~------~~~pii-lvlNKiDl~~~~~~ 120 (1043)
..+.+.|+|||+..... ....+..+|.+|+|++....-........+.+.. .+.+++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 46789999999876432 3456678999999999763211222223333322 256664 89999986432233
Q ss_pred HHHHHHHHhhh
Q psy11896 121 RVINQMRQKTS 131 (1043)
Q Consensus 121 ~~~~~l~~~~~ 131 (1043)
...+.+++.++
T Consensus 188 ~~~~~l~~~~~ 198 (257)
T 1wcv_1 188 QVEAQLRAHFG 198 (257)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHcc
Confidence 44455555443
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.65 Score=53.07 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=57.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCce---eeee---ecCCccccccccchhhhhhcCceEeeeeEEEEe---cCe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRIS---EMHE---VRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDH 267 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~---~~~~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~ 267 (1043)
+++.-|+|+|..++|||+|+|.|+...+... -.+. ...|- .+.. .......||-+.+....... .+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF---~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~ 140 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF---SWRG-GSERETTGIQIWSEIFLINKPDGKKV 140 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSS---CCCC-SSSCCCCSEEEESSCEEEECTTSCEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCc---eeCC-CCCCcCceEEEecCcccccCCCCCee
Confidence 4578899999999999999998764321100 0000 00110 0100 01223556666555443332 235
Q ss_pred eEEEEcCCCCCCch-----HHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHH
Q psy11896 268 NINIIDTPGHVDFT-----VEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQ 314 (1043)
Q Consensus 268 ~i~liDtPG~~df~-----~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~ 314 (1043)
.+.|+||.|..+-. ...+.++ -.++..|+=+. ..+..+....+..
T Consensus 141 ~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~--~~i~~~~L~~L~~ 192 (457)
T 4ido_A 141 AVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLS--QNVQEDDLQHLQL 192 (457)
T ss_dssp EEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEE--SSCCHHHHHHHHH
T ss_pred EEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccc--ccCCHHHHHHHHH
Confidence 79999999965421 1233333 34555554333 3344444444443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.44 Score=51.91 Aligned_cols=48 Identities=25% Similarity=0.233 Sum_probs=36.7
Q ss_pred HhHhcCeEEEEEeCCCCcchHH--HHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 287 ALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 287 ~l~~~D~~ilVvda~~g~~~~t--~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
.+..+|.+++|+|+..+..... ...+..+...++|+++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5788999999999997655544 22334445689999999999999854
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=1.5 Score=48.46 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCC---CC---------HHHHHHHHHHHhCCCceeeeecc
Q psy11896 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG---AD---------PYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 292 D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~---~~---------~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
+.+++|..+..-....+...+..+.+.++|+. +|+|++.-.. .+ ....++++.+.+........+|.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 46788887776666778888999999999975 7889987421 11 13457777777764233334453
|
| >2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=89.09 E-value=1.3 Score=40.53 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred EEEeeeecCCcc---EEEEEEecCeecCCCEEEecCCCcE---EEeceEEEeccCCeeecCeecCCCEEEEc--cC--cc
Q psy11896 505 LAFKLEAGKFGQ---LTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV--DC 574 (1043)
Q Consensus 505 ~V~K~~~d~~G~---i~~~RV~sGtl~~gd~v~~~~~~~~---~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~~ 574 (1043)
.+|++... |. +|=++|.+|.++.+..+.+.+.+.- -++.+|- +...+|+++.+|.=|+|. +. |.
T Consensus 17 ~vF~isk~--g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 17 ATFTVTEG--KKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEET--TEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EEEEeCCC--CceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCC
Confidence 35554322 55 9999999999999999999987743 3677776 667789999999999974 33 67
Q ss_pred ccCcEEe
Q psy11896 575 ASGDTFV 581 (1043)
Q Consensus 575 ~~Gdtl~ 581 (1043)
+.||.|-
T Consensus 91 k~GDiIE 97 (120)
T 2crv_A 91 KPGDQVI 97 (120)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 8999884
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=88.72 E-value=0.13 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
+++++|+.|+|||||+..|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.60 E-value=0.13 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+.++|+|+.|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56999999999999999999854
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.71 Score=49.40 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=47.3
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCC
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 115 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~ 115 (1043)
+.++|+|||+..... ........+|.+|+|+.+............+.+...+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 469999999976432 23334567899999999875544555666677777788876 899999963
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=0.15 Score=51.00 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+.++|+|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1043 | ||||
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 2e-93 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-29 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 2e-63 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 4e-07 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 6e-46 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 2e-23 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-41 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-26 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 6e-41 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 1e-25 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 4e-34 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 4e-21 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 6e-34 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 2e-20 | |
| d2bv3a3 | 121 | d.14.1.1 (A:479-599) Elongation factor G (EF-G), d | 2e-30 | |
| d2bv3a3 | 121 | d.14.1.1 (A:479-599) Elongation factor G (EF-G), d | 1e-09 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 9e-27 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 3e-14 | |
| d2bv3a5 | 89 | d.58.11.1 (A:600-688) Elongation factor G (EF-G) { | 1e-26 | |
| d2bv3a5 | 89 | d.58.11.1 (A:600-688) Elongation factor G (EF-G) { | 3e-09 | |
| d2dy1a5 | 96 | d.58.11.1 (A:570-665) Elongation factor G (EF-G) { | 1e-24 | |
| d2dy1a5 | 96 | d.58.11.1 (A:570-665) Elongation factor G (EF-G) { | 4e-08 | |
| d2bv3a4 | 75 | d.58.11.1 (A:404-478) Elongation factor G (EF-G) { | 2e-24 | |
| d2dy1a3 | 115 | d.14.1.1 (A:455-569) Elongation factor G (EF-G), d | 8e-24 | |
| d2dy1a3 | 115 | d.14.1.1 (A:455-569) Elongation factor G (EF-G), d | 2e-07 | |
| d2dy1a3 | 115 | d.14.1.1 (A:455-569) Elongation factor G (EF-G), d | 1e-06 | |
| d2bv3a1 | 121 | b.43.3.1 (A:283-403) Elongation factor G (EF-G), d | 2e-22 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-21 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 3e-20 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 8e-06 | |
| d1n0ua5 | 117 | d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) | 6e-20 | |
| d1n0ua5 | 117 | d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) | 5e-06 | |
| d2dy1a4 | 77 | d.58.11.1 (A:378-454) Elongation factor G (EF-G) { | 1e-18 | |
| d1n0ua4 | 79 | d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) | 1e-17 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 5e-16 | |
| d2dy1a1 | 103 | b.43.3.1 (A:275-377) Elongation factor G (EF-G), d | 5e-14 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 7e-13 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 9e-06 | |
| d1n0ua3 | 165 | d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), | 5e-12 | |
| d1n0ua3 | 165 | d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), | 4e-04 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 7e-12 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 1e-05 | |
| d1n0ua1 | 138 | b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), | 7e-11 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 1e-10 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 4e-05 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 6e-07 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 5e-04 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 296 bits (759), Expect = 2e-93
Identities = 140/278 (50%), Positives = 193/278 (69%), Gaps = 3/278 (1%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT 254
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGIT
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGIT 58
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 314
I +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 59 ITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 118
Query: 315 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRK 374
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ K
Sbjct: 119 AEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMK 178
Query: 375 AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434
A + LG ++R IP + +A ++L+E A+ DE + +LE + +E+++
Sbjct: 179 AYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA 238
Query: 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472
AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+
Sbjct: 239 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 117 bits (293), Expect = 1e-29
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V
Sbjct: 43 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVF 102
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 103 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 152
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 213 bits (544), Expect = 2e-63
Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 8/274 (2%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IR + + H SGKTTLTE +L+ TG V D + T+++
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGT---TTTDYTPEAKLHRTTVRTG 58
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T +R
Sbjct: 59 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 118
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
+P + + KLD+ Y + + + + +P+ G + G+ID+ KA +
Sbjct: 119 GLPRMVVVTKLDK--GGDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRY 176
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
E R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++KA
Sbjct: 177 EN---GEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 233
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472
+ PV + + + GV LL+ +L+ LP+
Sbjct: 234 AVRRGLLYPVALASGEREIGVLPLLELILEALPS 267
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 50.3 bits (119), Expect = 4e-07
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 14 QVRGKDNVG-AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
+ RG+ G D + T+++ L++ H + ++D PG+ DF E+ AL
Sbjct: 30 ERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALE 89
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
D A++ + A GVQ T +R +P + + KLD+ G + +
Sbjct: 90 AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLR 143
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 166 bits (421), Expect = 6e-46
Identities = 78/326 (23%), Positives = 125/326 (38%), Gaps = 46/326 (14%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+ +RN+ + AH+D GK+TLT+ ++ G IS D+ + E++RGITI
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA-----RFTDTRKDEQERGITI 68
Query: 256 QSAATY----------------TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 299
+S A T IN+ID+PGHVDF+ EV ALRV DGA++V+
Sbjct: 69 KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 128
Query: 300 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359
+ GV QT TV RQ + + INK+DR + + Q + + +
Sbjct: 129 TIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVS 188
Query: 360 LGSETK--GIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEI 416
++ + R + F G G I + K+ + ++++
Sbjct: 189 TYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDR------- 241
Query: 417 LGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 476
L S KK + T G L+ +LD +
Sbjct: 242 -----LWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFILDPIFRLFTAIMNF 289
Query: 477 TNYAIENGQEDKKVVLNP---SRDGK 499
I E ++VL +GK
Sbjct: 290 KKDEIPVLLEKLEIVLKGDEKDLEGK 315
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (250), Expect = 2e-23
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATY----------------TLWKD 49
++ K D+ + E++RGITI+S A T
Sbjct: 36 SLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95
Query: 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 109
IN+ID+PGHVDF+ EV ALRV DGA++V+ + GV QT TV RQ + + I
Sbjct: 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVI 155
Query: 110 NKLDRLGADPYRVINQMRQKTSR 132
NK+DR + + Q +R
Sbjct: 156 NKVDRALLELQVSKEDLYQTFAR 178
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 148 bits (375), Expect = 2e-41
Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 15/203 (7%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT + + + EV+ +D ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG----DIDKAPEERARGITINTAHV 60
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+ + +D PGH D+ + +DGAILV+ A G QT ++ V
Sbjct: 61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 120
Query: 321 PCI-AFINKLDRLGADPY--RVINQMRQKVG-HNAAFLQIPIGLGSETKGIIDLIQR-KA 375
P I F+NK+D + V ++R + + ++P+ GS + + + K
Sbjct: 121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 180
Query: 376 IYFEGPLGDNLR------IEEIP 392
E D + E IP
Sbjct: 181 RRGENEWVDKIWELLDAIDEYIP 203
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 105 bits (263), Expect = 2e-26
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 6/165 (3%)
Query: 11 KQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERA 70
E + +D ER RGITI +A + + +D PGH D+ +
Sbjct: 28 AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG 87
Query: 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPY--RVINQMR 127
+DGAILV+ A G QT ++ VP I F+NK+D + V ++R
Sbjct: 88 AAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 147
Query: 128 QKTSR---WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 169
++ + + + + + G+ ++I
Sbjct: 148 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIW 192
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 148 bits (375), Expect = 6e-41
Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 24/216 (11%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE----------MHEVRGKDNVGAVMDSMELERQ 250
N+ + H+DSGK+T T +++ G I + +G V+D ++ ER+
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RGITI A + + +ID PGH DF + D AIL++ G ++
Sbjct: 68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 127
Query: 311 VNRQMKR-------YDVP-CIAFINKLDRLGADPYRV------INQMRQKVGHNAAFLQI 356
+ Q + V I +NK+D + D R + +KVG+N +
Sbjct: 128 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 187
Query: 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 392
G +I+ Y + +
Sbjct: 188 VPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGK 223
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (260), Expect = 1e-25
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 13/176 (7%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
K E +G V+D ++ ER+RGITI A + + +ID PGH DF
Sbjct: 40 KFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIK 99
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-------YDVP-CIAFINKLDRLGA 117
+ D AIL++ G ++ + Q + V I +NK+D +
Sbjct: 100 NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 159
Query: 118 DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
D R Q+ + SN + + + IS T +Y G
Sbjct: 160 DESRF-----QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKG 210
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 127 bits (320), Expect = 4e-34
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 10/197 (5%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I K +D+ ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGG-----AKFKKYEEIDNAPEERARGITINAAHV 59
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+ D PGH D+ + LDG ILV+ A G QT ++ V
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 321 -PCIAFINKLDRL--GADPYRVINQMRQKVG-HNAAFLQIPIGLGSETKGIIDLIQRKAI 376
+ ++NK D + V ++R+ + + PI +GS + +
Sbjct: 120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 179
Query: 377 YFEGPLGDNLRIEEIPA 393
L D + IP
Sbjct: 180 KSVQKLLDAV-DTYIPV 195
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 90.5 bits (224), Expect = 4e-21
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
I I E K +D+ ER RGITI +A + D PGH D+
Sbjct: 22 AITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRL--GADPYRV 122
+ LDG ILV+ A G QT ++ V + ++NK D + V
Sbjct: 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELV 141
Query: 123 INQMRQ 128
++R+
Sbjct: 142 ELEIRE 147
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 128 bits (321), Expect = 6e-34
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD----------NVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L G I E ++ ++D ++ ER+
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RG+TI K + IID PGH DF + D AILV+ A G ++
Sbjct: 65 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 311 VNRQMKRYDV--------PCIAFINKLDRLGADP--------YRVINQMRQKVGHNAAFL 354
V Q + + + I +NK+D +++ + G N +
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 184
Query: 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPA 393
+ + I + Y GP + ++++
Sbjct: 185 RFVPVVAPSGDNITHKSENMKWY-NGPTLEEY-LDQLEL 221
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 88.7 bits (219), Expect = 2e-20
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 11/177 (6%)
Query: 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64
+ ++ + + ++D ++ ER+RG+TI K + IID PGH DF
Sbjct: 36 KEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFV 95
Query: 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLG 116
+ D AILV+ A G ++V Q + + + I +NK+D
Sbjct: 96 KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 155
Query: 117 ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
+ +S S +R + + A T +E + +Y G
Sbjct: 156 PPYDEKRYKEIV---DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG 209
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Score = 114 bits (286), Expect = 2e-30
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
P+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK
Sbjct: 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPK 58
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++
Sbjct: 59 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 118
Query: 790 G 790
G
Sbjct: 119 G 119
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Score = 55.0 bits (132), Expect = 1e-09
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 803 ISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLK-DG 861
I+ P++ +G + G G+ V I E +G +G V G
Sbjct: 9 ITKPVDVEG--------KFIRQTGGRGQYGHVKIKVEPLPRG-------SGFEFVNAIVG 53
Query: 862 DNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH 921
+ I G ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 54 GV--IPKEYIP--AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGS 109
Query: 922 GAMKQAYEEG 931
A+K+A ++G
Sbjct: 110 MAIKEAVQKG 119
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 107 bits (267), Expect = 9e-27
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 190 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH-EVRGKDNVGA-------- 240
L +H+ E + ++D GK+TL R+L + I E H E +D+ +
Sbjct: 1 LGQHERKE-MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVD 59
Query: 241 ---VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 297
++D ++ ER++GITI A Y I DTPGH +T + D AI++
Sbjct: 60 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIIL 119
Query: 298 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357
+ A GVQ+QT + + I L RV ++ A +
Sbjct: 120 VDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK 179
Query: 358 IG 359
Sbjct: 180 PT 181
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 71.0 bits (173), Expect = 3e-14
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 4/171 (2%)
Query: 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 62
+ K ++ ++D ++ ER++GITI A Y I DTPGH
Sbjct: 42 EAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQ 101
Query: 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRV 122
+T + D AI+++ A GVQ+QT + + I L RV
Sbjct: 102 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV 161
Query: 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
++ ++ + + +SA +ER +Y G
Sbjct: 162 FESIKADYLKFAEG----IAFKPTTMAFVPMSALKGDNVVNKSERSPWYAG 208
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 102 bits (255), Expect = 1e-26
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
ILEPIM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLR
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLR 61
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLV 1022
S TQG+G F M + Y +VQ++L+
Sbjct: 62 SKTQGRGSFVMFFDHYQEVPKQVQEKLI 89
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 52.5 bits (126), Expect = 3e-09
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
ILEPIM VE++TP E+ G V+ + R G + G E + + I A +
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFV 48
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 96.5 bits (240), Expect = 1e-24
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
+LEPI +++ P E G VL+ + R G + G E + ++AE+PL ++ + L
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALP 61
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQE 1027
T G G +++++S Y+ P + R+V E +
Sbjct: 62 GLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQ 94
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 49.5 bits (118), Expect = 4e-08
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+LEPI +++ P E G VL+ + R G + G E + ++AE+
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEV 48
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 95.6 bits (238), Expect = 2e-24
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
V +PV+ ++I+ D++ S+A+ R +E PTF PE+ T++SGMGEL LEI
Sbjct: 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIV 60
Query: 655 QRMEREYNCPVVLGK 669
R++RE+ +GK
Sbjct: 61 DRLKREFKVDANVGK 75
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 95.1 bits (236), Expect = 8e-24
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET+ + + +KKQ+GG GQYG V L ++ F G +P +
Sbjct: 2 YRETIKKVAEGQGKYKKQTGGHGQYGDVW-----LRLEPASEYGFEWRITGGVIPSKYQE 56
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 48.5 bits (115), Expect = 2e-07
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 878 HGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 930
G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 60 EGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 45.8 bits (108), Expect = 1e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 835 TIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA-HGFKQMCEK 886
E +KG L+G V G + ++ +G H VDS++++F +AA FK++ +
Sbjct: 60 EGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Score = 91.3 bits (226), Expect = 2e-22
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 486 EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRV 544
E + V ++P +G P ALAFK+ A + G+LT++R Y G L G +YN +K RV
Sbjct: 13 EGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERV 70
Query: 545 SRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESI 593
+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI
Sbjct: 71 ARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESI 120
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 91.5 bits (226), Expect = 5e-21
Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 30/226 (13%)
Query: 185 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN------- 237
+ E L + E++ NI H+D+GK+TL ILF TG + + + +
Sbjct: 11 VDQELLKDMYGKEHV-NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKE 69
Query: 238 ---VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGA 294
+ +DS ER++G T++ Y + +++D PGH + + D
Sbjct: 70 SWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIG 129
Query: 295 ILVLCAVGGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLGADP--------YR 338
+LV+ A G Q + + V + INK+D
Sbjct: 130 VLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVD 189
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKG--IIDLIQRKAI-YFEGP 381
++ ++V + + S G + D + +++GP
Sbjct: 190 KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP 235
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 88.6 bits (218), Expect = 3e-20
Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 16/232 (6%)
Query: 199 IRN--IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
IR+ + + H+D GKTTL + I E + + +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHI---GATEIPMDVIEGICGDF 59
Query: 257 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
+ IDTPGH FT +R + D AIL++ G + QT ++
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 317 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE---TKGIIDLIQR 373
Y P + NK+DR+ + +Q + K + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFES 179
Query: 374 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
+ + I I A + E EL+ + L + +L E+
Sbjct: 180 ERFDRVTDFASQVSIIPISA-ITGE---GIPELLTMLMG----LAQQYLREQ 223
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 45.8 bits (107), Expect = 8e-06
Identities = 24/136 (17%), Positives = 42/136 (30%)
Query: 13 EQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
+ G + + + IDTPGH FT +R
Sbjct: 33 REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGA 92
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132
+ D AIL++ G + QT ++ Y P + NK+DR+ + S+
Sbjct: 93 LADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152
Query: 133 WISNESLSEHKPIEYI 148
+ +
Sbjct: 153 QDIQVQQKLDTKVYEL 168
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.3 bits (208), Expect = 6e-20
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLR 994
EP+ VEI P + G + +++ K+ G + E + T+ A +P+N+ FGF G+LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQEATNPQAAATQKKKK 1041
+T G+ M + +S + D + A +K+
Sbjct: 61 QATGGQAFPQMVFDHWSTLGSDPLDPTSKAGE-----IVLAARKRHG 102
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (105), Expect = 5e-06
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEM 840
EP+ VEI P + G + +++ K+ G + E + T+ A +
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 47
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 78.8 bits (194), Expect = 1e-18
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
+ DP V +++ D +A+++ +EDP+ E+ E L+ G GELHL
Sbjct: 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAK 60
Query: 655 QRMEREYNCPVVLGKPKV 672
+R+ ++Y V PKV
Sbjct: 61 ERL-QDYGVEVEFSVPKV 77
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.1 bits (187), Expect = 1e-17
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 594 YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIY 653
+ PVV ++++ N D + ++R +K DP + ES E +V+G GELHLEI
Sbjct: 2 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEIC 60
Query: 654 AQRMEREY-NCPVVLGKP 670
Q +E ++ P+ + P
Sbjct: 61 LQDLEHDHAGVPLKISPP 78
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 75.8 bits (185), Expect = 5e-16
Identities = 38/191 (19%), Positives = 58/191 (30%), Gaps = 24/191 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-- 258
NIG+ H+D GKTTL + I R G + E G+
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKR-----GMTIKLGYAETNIGVCESCKKP 64
Query: 259 -------------ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
+ I+ ID PGH + ++DGAILV+ A
Sbjct: 65 EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP 124
Query: 306 SQTLTVNRQ--MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
+ I NK+D + + + ++ +PI S
Sbjct: 125 QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184
Query: 364 TKG--IIDLIQ 372
I LI+
Sbjct: 185 LHKINIDSLIE 195
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 67.0 bits (163), Expect = 5e-14
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 552
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + ++ L
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLP--HLYVPMG 59
Query: 553 NEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591
++ +VEE AG + + G S E
Sbjct: 60 KDLLEVEEAEAGFVLGVPKAEGLHRGMVL-WQGEKPESEE 98
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 67.3 bits (163), Expect = 7e-13
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 34/215 (15%)
Query: 151 IGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDS 210
+ SGKTTLT Y ++ N+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVA-------------------YVNLDTGVKELP 43
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
+ ++ R + E+ N V L + L K+++
Sbjct: 44 YEPSIDVREFV---TVEEIMREGYGPNGAIVESYDRLMEK--FNEYLNKILRLEKENDYV 98
Query: 271 IIDTPGHVDFTVEVERALRVLDG-----AILVLCAVGGVQSQT-----LTVNRQMKRYDV 320
+IDTPG ++ + E +R+++ + + + R
Sbjct: 99 LIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGA 158
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355
I +NK+D L + + + + + A L+
Sbjct: 159 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLK 193
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDG-----AILVLCAVGGVQ 88
L K+++ +IDTPG ++ + E +R+++ + + +
Sbjct: 79 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKK 138
Query: 89 SQT-----LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
R I +NK+D L + + +
Sbjct: 139 PNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE 183
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.2 bits (153), Expect = 5e-12
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 8/153 (5%)
Query: 636 ESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGS 695
ES +T +S H IY + + + + + ++ DF + +
Sbjct: 10 ESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRD------DFKARARIMADDY 63
Query: 696 GQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG 755
G + P N ID+T +++ F+ ++G + G +
Sbjct: 64 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRS 123
Query: 756 VRMVLKDGDNHMVDSNEISF--ILAAHGAMKQA 786
VR+ + D H + I A
Sbjct: 124 VRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 156
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 857 VLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916
++ D + +EI F+ ++G + G + VR+ + D H +
Sbjct: 85 LVIDQTKAVQYLHEIKD-SVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGG 143
Query: 917 --ILAAHGAMKQA 927
I A
Sbjct: 144 QIIPTMRRATYAG 156
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 63.5 bits (153), Expect = 7e-12
Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 9/181 (4%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-----VMDSMELERQRGITI 255
NIG+ H+D GKTTLT+ + RG + R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+ ++ ID PGH + ++DGAILV+ A +
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 316 KR--YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKG--IIDLI 371
+ I NK++ + + + ++ PI S G I L+
Sbjct: 127 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 186
Query: 372 Q 372
+
Sbjct: 187 K 187
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHID 209
NIG+ H+D GKTTLT+ + E R I+ + E R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDT-HSEELRRGITIK--IGFADAEIRRCPNCGRYST 63
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
S + R+S + + + ++ L + I + +
Sbjct: 64 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREH 123
Query: 270 NII 272
+
Sbjct: 124 LMA 126
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.9 bits (142), Expect = 7e-11
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 473 PGEVTNYAIEN----GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ--LTYMRCYQGK 526
P Y E +D + + D K + K+ + R + G
Sbjct: 2 PVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGT 61
Query: 527 LRKGEMIYNVRTDKKVR---------VSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CA 575
++ G+ + + + R+V + +E +++ AG+I L G+D
Sbjct: 62 VKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLL 121
Query: 576 SGDTFVTDKNNSISLES 592
T +T + +++
Sbjct: 122 KTGT-LTTSETAHNMKV 137
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 59.7 bits (143), Expect = 1e-10
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+GI HID GKTTL++ + + D + ++RGITI +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFS 52
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+++ I ++D PGH D V A ++D A++V+ A G ++QT + +++
Sbjct: 53 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 112
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ----IPIGLGSETKGIIDLIQ 372
P I I K D G + + + + + + L+ IPI G+ +L
Sbjct: 113 PIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS-AKTGFGVDELKN 167
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISE 177
N+GI HID GKTTL++ + +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIASTSAH 34
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 32/220 (14%)
Query: 202 IGISAHIDSGKTTLTERILF-----YTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
I I+ +SGKT+L + + + ++D + R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 257 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
T + I ++D+ L L++
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLV-----------------DILSITESSC 108
Query: 317 RYDVPCIAFINKLDRLGADPYRVI--------NQMRQKVGHNAAFLQIPIGLGSETKGII 368
+ + NK + A P I ++ ++ + ++ I + +
Sbjct: 109 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168
Query: 369 DLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408
D++Q + L + + + K S+ +E I+
Sbjct: 169 DVLQSTDGFKFANLEAS--VVAFEGSINKRKISQWREWID 206
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 200 RNIGISAHIDSGKTTLTERILF------YTGRISEMHEVRGKDNVGAVMDSMELERQRGI 253
R + DSGKT L R+L T + +N G + ++L +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 254 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
Q + + ++D+ +V L + ++
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFL------------------YQVLIDS 102
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVI-NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 372
+ + NK D A ++I Q+ +++ + +
Sbjct: 103 MALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLG 162
Query: 373 RKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420
+K FE L++E + K I+ + ++ L ++
Sbjct: 163 KKGKEFEFSQLP-LKVEFLECSAKGGRGDTGSADIQDL---EKWLAKI 206
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1043 | |||
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.97 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.96 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.95 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d2bv3a3 | 121 | Elongation factor G (EF-G), domain IV {Thermus the | 99.94 | |
| d2dy1a3 | 115 | Elongation factor G (EF-G), domain IV {Thermus the | 99.93 | |
| d2dy1a5 | 96 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.93 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.92 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.9 | |
| d2bv3a5 | 89 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.9 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1n0ua5 | 117 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.88 | |
| d2dy1a4 | 77 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.82 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 99.79 | |
| d1n0ua4 | 79 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.79 | |
| d1n0ua3 | 165 | Elongation factor 2 (eEF-2), domain IV {Baker's ye | 99.79 | |
| d2bv3a4 | 75 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.76 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.73 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.73 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 99.72 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.72 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.72 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.71 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.68 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 99.66 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.65 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.64 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.64 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.64 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.59 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.58 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.58 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.57 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.57 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.57 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.55 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.54 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.53 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.52 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.51 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.49 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.48 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.48 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.47 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.47 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.46 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.46 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.46 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.46 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.45 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.45 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.43 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.43 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.42 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.41 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.41 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.4 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.4 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.4 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.38 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.38 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.38 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.38 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1n0ua3 | 165 | Elongation factor 2 (eEF-2), domain IV {Baker's ye | 99.37 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.36 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.35 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.34 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.33 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.33 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.32 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.32 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.32 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 99.32 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.3 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.29 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.29 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.29 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.28 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.28 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.27 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.27 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.25 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.24 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.23 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.21 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.19 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.17 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.17 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.17 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.16 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.15 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.12 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.1 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.09 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.08 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.06 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.04 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.03 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.02 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.02 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.0 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.9 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.89 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.85 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 98.81 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.75 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.73 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.73 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.72 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 98.7 | |
| d2dy1a3 | 115 | Elongation factor G (EF-G), domain IV {Thermus the | 98.66 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.66 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 98.6 | |
| d2bv3a3 | 121 | Elongation factor G (EF-G), domain IV {Thermus the | 98.55 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 98.54 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.51 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 98.49 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.49 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 98.44 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 98.42 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 98.34 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.32 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.19 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.18 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 98.16 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.14 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.11 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.1 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 98.08 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.08 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 98.01 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.01 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.97 | |
| d2dy1a5 | 96 | Elongation factor G (EF-G) {Thermus thermophilus, | 97.72 | |
| d2bv3a5 | 89 | Elongation factor G (EF-G) {Thermus thermophilus [ | 97.67 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 97.53 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.28 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.22 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.14 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.12 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.01 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.01 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 96.93 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 96.87 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.71 | |
| d1n0ua5 | 117 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 96.57 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 96.49 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 96.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.27 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 96.21 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.07 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.99 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.88 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.54 | |
| d1vi7a2 | 71 | Hypothetical protein YigZ, C-terminal domain {Esch | 95.42 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 95.18 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.85 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.47 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 94.11 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 93.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.17 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 92.62 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.57 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.06 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.7 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 91.07 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.04 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.93 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 90.92 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.22 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.69 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 89.67 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.23 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 89.18 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 88.86 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 88.36 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 87.78 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 86.84 | |
| d1t95a3 | 73 | Hypothetical protein AF0491, C-terminal domain {Ar | 86.74 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 86.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 86.04 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.0 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.93 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.38 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 85.33 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 85.16 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 84.59 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 84.05 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.92 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 83.77 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 83.64 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 83.18 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 83.16 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 83.14 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 83.1 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.03 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 82.62 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 81.72 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.63 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 81.55 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 81.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 81.18 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 81.09 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 80.99 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 80.78 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 80.76 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.66 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 80.32 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 80.19 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 80.08 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 80.08 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-55 Score=470.45 Aligned_cols=276 Identities=51% Similarity=0.796 Sum_probs=251.9
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
+..++||||+++||.|+|||||+++|++.++.+.+.|.++++ ++++|+.++|++||+|+..+..++.|+++++||+|
T Consensus 1 y~~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iD 77 (276)
T d2bv3a2 1 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIID 77 (276)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC----------------------CCCCCCCSEEEEEETTEEEEEEC
T ss_pred CChhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecC---ceEEeccHHHHhcCCccccceeeeccCCeEEEEec
Confidence 356789999999999999999999999999999999999888 56899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+++||||||+.++++.++++++++.|+..+.|
T Consensus 78 tPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp 157 (276)
T d2bv3a2 78 APGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 157 (276)
T ss_dssp CCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
+++|++.+.+|.|++|+++++++.|..+.|......++|+++.+.+.++|..|+|.++|.||+|+++||++.+++.+++.
T Consensus 158 ~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~ 237 (276)
T d2bv3a2 158 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 237 (276)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHH
T ss_pred EEecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPs 472 (1043)
.+++++++.+.++|||||||.+|.||+.|||+|++++||
T Consensus 238 ~~l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS 276 (276)
T d2bv3a2 238 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276 (276)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999997
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=100.00 E-value=6.7e-51 Score=436.81 Aligned_cols=266 Identities=29% Similarity=0.476 Sum_probs=255.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
||||+++||.|||||||+++|++.++.+.+.|.++++ .+++|+.++|++||+|+..+..++.|+++++||||||||.
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~ 78 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 78 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhc---cccccchHHHHHhCCeEEeecccccccccceeEEccCchh
Confidence 7999999999999999999999999999999999888 5689999999999999999999999999999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecc
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
||.+++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+++|+||||+ .+++.+.+++++++++ .+.|+++|+
T Consensus 79 dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~-~~~~~~~l~~~~~~lg-~~vp~~~Pi 156 (267)
T d2dy1a2 79 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILPIDLPL 156 (267)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG-CCCHHHHHHHHHHHHC-SEEECEEEE
T ss_pred hhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc-cccchhhhhhHHHHhc-cCcCeEeee
Confidence 99999999999999999999999999999999999999999999999999998 5799999999999998 689999999
Q ss_pred ccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHH
Q psy11896 359 GLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438 (1043)
Q Consensus 359 ~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~ 438 (1043)
+.+..|.|++|+++++++.|+. ......++|++..+.+.++|++|+|.++|.||+++++|+++..++.+++..++++
T Consensus 157 ~~~~~f~GvvDl~~~~a~~~~~---~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~~ 233 (267)
T d2dy1a2 157 YEGGKWVGLIDVFHGKAYRYEN---GEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 233 (267)
T ss_dssp EETTEEEEEEETTTTEEEEEET---TEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred ccCCceeEEeecCcceEEEecC---CCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 9999999999999999999964 3445678999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCC
Q psy11896 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPs 472 (1043)
+++.+.++|||||||.+|.||+.|||+|++++||
T Consensus 234 ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps 267 (267)
T d2dy1a2 234 AVRRGLLYPVALASGEREIGVLPLLELILEALPS 267 (267)
T ss_dssp HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999997
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-32 Score=302.12 Aligned_cols=262 Identities=29% Similarity=0.395 Sum_probs=179.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe---------
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--------- 264 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--------- 264 (1043)
..+++||||||+||+|||||||+++|++.++.+...+.... .++|+.++|++||+|++++..++.|
T Consensus 12 ~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~-----~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~ 86 (341)
T d1n0ua2 12 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA-----RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKE 86 (341)
T ss_dssp HCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHH
T ss_pred cCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccc-----cccccchhHHhcCceEeCCEEEEEeccCcccccc
Confidence 34678999999999999999999999999998876544433 4789999999999999999999866
Q ss_pred -------cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHH
Q psy11896 265 -------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY 337 (1043)
Q Consensus 265 -------~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~ 337 (1043)
+++.+||||||||.||..++.++++.+|+|++||||.+|++.||+.+|++|.+.++|+++||||||+..+++.
T Consensus 87 ~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~ 166 (341)
T d1n0ua2 87 IKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQ 166 (341)
T ss_dssp CSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSC
T ss_pred hhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccccHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred HHHHHHHHHhCCCceeeeec--------------------cccCCCeeEEEEcccceeEeecCCC------------CCe
Q psy11896 338 RVINQMRQKVGHNAAFLQIP--------------------IGLGSETKGIIDLIQRKAIYFEGPL------------GDN 385 (1043)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~~p--------------------~~~~~~~~g~~dl~~~~~~~~~~~~------------g~~ 385 (1043)
...+++.++++..+.+++.| +..++...||.+.+...+..|.... |+.
T Consensus 167 ~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~Ftl~~fa~~y~~k~~~~~~~l~~~LWGd~ 246 (341)
T d1n0ua2 167 VSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDS 246 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSC
T ss_pred hhHHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeEEeeHHHHHHHHHHhCCCHHHHHHHhccCc
Confidence 33333333333322222222 2334566788887765443332221 222
Q ss_pred e--------Ee-------ecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC--CCHHHHH---HHHHHhhhcCcc
Q psy11896 386 L--------RI-------EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKS--ISEDDIK---KAIRRSTLTRKF 445 (1043)
Q Consensus 386 ~--------~~-------~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~--~~~~~l~---~~l~~~~~~~~~ 445 (1043)
+ .. .+....+.+.+.+.-.++..++.+.+.+-+.++++... ++.++.. +.+-+ ..+..|
T Consensus 247 y~~~~~kk~~~~~~~~~~~~lk~~FVqfILepI~ki~~~~~~~~~~~l~k~l~~l~i~l~~~~~~~~~k~llk-~v~~~~ 325 (341)
T d1n0ua2 247 FFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLK-VVMRKF 325 (341)
T ss_dssp EEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHH-HHHHHH
T ss_pred ccccccceeeccCCcccCCcccceeeeeeHHHHHHHHHHHhhcchhHHHHHHHHcCcccChHhhccchHHHHH-HHHHHH
Confidence 1 11 12345688899999999999887777666777766432 3232211 11111 235567
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhCC
Q psy11896 446 TPVLVGTALKNKGVQTLLDAVLDYLP 471 (1043)
Q Consensus 446 ~Pv~~gSa~~~~Gv~~Lld~i~~~lP 471 (1043)
+|. -+.|+++|+.++|
T Consensus 326 ~~~----------~~~ll~~iv~~iP 341 (341)
T d1n0ua2 326 LPA----------ADALLEMIVLHLP 341 (341)
T ss_dssp SBH----------HHHHHHHHHHHSC
T ss_pred cCc----------hhHHHHHHHHhCc
Confidence 776 3789999999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=7.2e-30 Score=264.35 Aligned_cols=146 Identities=30% Similarity=0.398 Sum_probs=126.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..||+++||+|||||||+++|++.++.+...+.+..+ ..+|+.++|++||+|+++....+.|++++++|||||||.
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~----~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~ 78 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 78 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCH----HHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhh----hhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCch
Confidence 4699999999999999999999888877665555443 457999999999999999999999999999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCC--HHHHHHHHHHHhC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD--PYRVINQMRQKVG 348 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~--~~~~~~~i~~~l~ 348 (1043)
||..++.++++.+|+||+||||.+|++.||+++|.++...++|. ++++||||+.... +++..+++.+.++
T Consensus 79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~ 151 (204)
T d2c78a3 79 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 151 (204)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999984 6679999997532 3444455555443
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.95 E-value=9.5e-29 Score=253.44 Aligned_cols=130 Identities=31% Similarity=0.351 Sum_probs=112.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..||+++||+|||||||+++|++..+.... ........+|..+.|++||+|++.+...+.|.++.++++|||||.
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~-----~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~ 77 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGG-----AKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTS-----BCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHcCc-----chhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence 468999999999999999999864322110 111123567888899999999999999999999999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~ 333 (1043)
+|..++.++++.+|++++||||.+|+++||+++|.++...++ |+|+|+||||+..
T Consensus 78 ~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (196)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccc
Confidence 999999999999999999999999999999999999999887 5778899999864
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-27 Score=253.12 Aligned_cols=139 Identities=30% Similarity=0.366 Sum_probs=122.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceee---------ee-ecCCccccccccchhhhhhcCceEeeeeEEEEecCee
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEM---------HE-VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~---------~~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 268 (1043)
..||+++||+|||||||+++|++.++.+.+. .. ......+++++|+++.|++||+|++.+...+.|++++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 3599999999999999999999998887641 11 1122345678999999999999999999999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHH
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPY 337 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~ 337 (1043)
++|||||||.||..++.++++.+|+||+||||.+| +.+||+++|..+...++| +|+++||||+.+++..
T Consensus 86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~ 162 (239)
T d1f60a3 86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 162 (239)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHH
Confidence 99999999999999999999999999999999988 568999999999999998 5678999999987753
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.8e-27 Score=218.27 Aligned_cols=121 Identities=39% Similarity=0.689 Sum_probs=117.8
Q ss_pred CeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 670 p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|+|+|||||+++++.+++|++|+||.+||++|.++++|+++ ++++.|++++.++.+|++|++||++|++++|.+|||.
T Consensus 1 PqV~YREtI~~~~~~~~~~~rq~gg~~~~a~V~l~veP~~~--g~g~~f~~~v~~~~ip~~~~~ave~g~~~a~~~G~l~ 78 (121)
T d2bv3a3 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLI 78 (121)
T ss_dssp CEECCEEECSSCEEEEEEEEEECSSSEEEEEEEEEEEECST--TCCEEEEECCCTTSSCGGGHHHHHHHHHHHTTSCSSS
T ss_pred CCccceeccCCcEEEEEEEEEecCCCCeeEEEEEEEEEeeC--CCCcEEeeeecCCCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 89999999999999999999999999999999999999886 6789999999999999999999999999999999999
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccc
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~ 792 (1043)
||||+||+|+|.||++|.++|++.+|+.|+..|+++|+.+|.|
T Consensus 79 G~pv~dv~v~l~~g~~h~~dSs~~af~~Aa~~A~~~A~~kA~P 121 (121)
T d2bv3a3 79 GFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 121 (121)
T ss_dssp SCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCEeEEEEEEEEEEEccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999875
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.93 E-value=4.3e-26 Score=208.40 Aligned_cols=115 Identities=34% Similarity=0.499 Sum_probs=111.1
Q ss_pred eEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccc
Q psy11896 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSR 752 (1043)
Q Consensus 673 ~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~p 752 (1043)
||||||+++++.+++|++|+||.+||++|.+++||. .++.|.|++.++.+|++|+++|++|+++++..|+|+|+|
T Consensus 1 ~YRETI~~~~~~~~~~~rq~GG~gq~a~V~l~vEP~-----~~~~f~~~i~~~~iP~~~i~ave~gv~~a~~~G~l~GyP 75 (115)
T d2dy1a3 1 PYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPA-----SEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFP 75 (115)
T ss_dssp CCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEEC-----SSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCC
T ss_pred CCccccCcceEEEEEEEeecCCCCcEEEEEEEeccc-----cceeEEEEecccccchhHHHHHHHHHHHHhhcccccCCc
Confidence 799999999999999999999999999999999993 358999999999999999999999999999999999999
Q ss_pred eeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccc
Q psy11896 753 VAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792 (1043)
Q Consensus 753 v~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~ 792 (1043)
|+||+|+|.||++|.+||++.+|+.|+.+|+++|+.+|.|
T Consensus 76 v~dvkv~L~dg~~h~~dSse~AF~~Aa~~A~reA~~~A~P 115 (115)
T d2dy1a3 76 VMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHP 115 (115)
T ss_dssp BCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCE
T ss_pred eeeeEEEEEEeecccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999875
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.93 E-value=2.9e-26 Score=205.54 Aligned_cols=96 Identities=28% Similarity=0.544 Sum_probs=93.3
Q ss_pred eeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC
Q psy11896 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 934 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
+||||||.|+|.||.+++|+|+++|++|||.|++++..+++++|+|++|++|+|||+++||+.|+|+|+|++.|+||+++
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~f~~y~~v 80 (96)
T d2dy1a5 1 VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEV 80 (96)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred CeECcEEEEEEEECHHHHHHHHHHHHhcCCEEeeccccCCcEEEEEEEeHHHhhCHHHHhhhhCCCcEEEEEEeCccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC
Q psy11896 1014 LPEVQDRLVNEYQEATN 1030 (1043)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~ 1030 (1043)
|++++++|+++ |++||
T Consensus 81 p~~~~~~vi~~-r~~kG 96 (96)
T d2dy1a5 81 PPHLAQRIVQE-RAQEG 96 (96)
T ss_dssp CHHHHHHHHHH-HHHCC
T ss_pred CHHHHHHHHHH-HhcCC
Confidence 99999999987 78887
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.92 E-value=7.9e-27 Score=246.31 Aligned_cols=134 Identities=26% Similarity=0.286 Sum_probs=104.3
Q ss_pred ceee--EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEe-eeeEEEEecCeeEEEEcC
Q psy11896 198 YIRN--IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ-SAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 198 ~ir~--i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~-~~~~~~~~~~~~i~liDt 274 (1043)
++|| |||+||+|||||||+++|+...+.+...+.+..... .+..+.+...+++.. .....+.+++.+++++||
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 77 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIG----ATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDT 77 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTT----EEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeecc----ccccccccccccccccccceeecccccccccccc
Confidence 4788 999999999999999999988776665544433211 111223333333221 222335678889999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
|||.+|..++..++..+|++|+||||.+|++.+|..++.++...++|+++|+||||+...+
T Consensus 78 PGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 78 PGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGW 138 (227)
T ss_dssp CTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTC
T ss_pred cceecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCch
Confidence 9999999999999999999999999999999999999999999999999999999998655
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.92 E-value=1.1e-24 Score=227.22 Aligned_cols=140 Identities=29% Similarity=0.347 Sum_probs=114.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceee------------eeecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEM------------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
..+.||+++||+|||||||+++|++.++.+.+. |...+.......+|..+.|+.+|+|+......+.+
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 457789999999999999999999988877541 11112223345677888999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
.++.++++|||||.+|..++.++++.+|+|++||||.+|+.+||.+++..+...++| +++++||||+.+.+.
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~ 159 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDE 159 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCH
T ss_pred cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccc
Confidence 999999999999999999999999999999999999999999999999999999987 678899999986553
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=6.5e-25 Score=230.75 Aligned_cols=137 Identities=31% Similarity=0.367 Sum_probs=106.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeec----------CCccccccccchhhhhhcCceEeeeeEEEEecCee
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR----------GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 268 (1043)
..||+++||+|||||||+++|++.++.+...+... .....++.+|+.+.|++||+|+......++|+++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 45999999999999999999999888776532111 11123457899999999999999999999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
++|||||||.||..++.++++.+|+||+||||.+|+ ..||++++..+...+++ +|+++||||+...+
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcc
Confidence 999999999999999999999999999999999995 56788888888888885 77789999987544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.90 E-value=2.4e-24 Score=218.63 Aligned_cols=122 Identities=31% Similarity=0.461 Sum_probs=96.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.|||++||+|||||||+|+|+.... ....|..+.++.+|+|+......+.+.++.++++|||||.+
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~ 71 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 71 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcC--------------ceecccccceeeeeeeccccccccccCCccccccccccccc
Confidence 4899999999999999999984332 22346677889999999999999999999999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
|..++.+++..+|++++|+|+.+|+..|++.++..+...++|+++|+||||+...+
T Consensus 72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~ 127 (179)
T d1wb1a4 72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127 (179)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH
T ss_pred cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHH
Confidence 99999999999999999999999999999999999999999999999999997543
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.4e-24 Score=191.69 Aligned_cols=89 Identities=44% Similarity=0.740 Sum_probs=86.5
Q ss_pred eeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC
Q psy11896 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 934 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
.||||||.|+|.||.+++|.|+++|++|||.|++++..++...|+|++|++|+|||+++||+.|+|+|+|+++|+||+++
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~f~~y~~v 80 (89)
T d2bv3a5 1 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEV 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHTTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHTTTTCCEEEEEEEEEEEC
T ss_pred CEECcEEEEEEEECHHHHHHHHHHHHHcCCccccCCcccccEEEEEECCHHHHhhHHHhhhhcCCCCEEEEEEecCcccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH
Q psy11896 1014 LPEVQDRLV 1022 (1043)
Q Consensus 1014 ~~~~~~~~~ 1022 (1043)
|+++++++|
T Consensus 81 p~~~~~~ii 89 (89)
T d2bv3a5 81 PKQVQEKLI 89 (89)
T ss_dssp CHHHHHHCC
T ss_pred CHhHHhccC
Confidence 999998864
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.89 E-value=4.2e-24 Score=226.65 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=89.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeee----------cCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV----------RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v----------~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
+..||+++||+|||||||+++|++.++.+.+.... .........+|..+.|++||+|++.....+.|+++
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 102 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 102 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence 35699999999999999999999998887642210 11112346789999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
.++++|||||.+|..++.++++.+|+|++||||.+|+ ..||.+++..+...++| +++++||||+..++
T Consensus 103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~ 178 (245)
T d1r5ba3 103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 178 (245)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccc
Confidence 9999999999999999999999999999999999987 44999999999999997 56889999998665
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=6.7e-24 Score=220.10 Aligned_cols=135 Identities=24% Similarity=0.211 Sum_probs=89.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceee-----eeecCCccccccccchhhhhhcCceEeee-----eEEEEecCee
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEM-----HEVRGKDNVGAVMDSMELERQRGITIQSA-----ATYTLWKDHN 268 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~-----~~v~~~~~~~~~~d~~~~e~~~giTi~~~-----~~~~~~~~~~ 268 (1043)
..||+++||+|||||||+++|+......... ...+.+............+..++.+.... ........++
T Consensus 8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 87 (205)
T d2qn6a3 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 87 (205)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence 4599999999999999999998643322110 00011100000001111111111111000 0011223468
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccCCCC
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLG 333 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD~~~ 333 (1043)
++++|||||.||..++.+++..+|++|+||||.+|+ +.||++++..+...++ |+++++||||+..
T Consensus 88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~ 154 (205)
T d2qn6a3 88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 154 (205)
T ss_dssp EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSC
T ss_pred EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCcc
Confidence 999999999999999999999999999999999997 8899999999999998 6778899999974
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=3.4e-23 Score=213.03 Aligned_cols=118 Identities=30% Similarity=0.336 Sum_probs=94.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW------------- 264 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------- 264 (1043)
...|||++||+|||||||+++|++.. .|..+.+..+|+|.+.......+
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~------------------~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 65 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVW------------------TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP 65 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC------------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSS
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhh------------------hhhhHHHHHcCcccccchhhhhhhccchhhhcccee
Confidence 34599999999999999999997432 23334556667666655443332
Q ss_pred ----------cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCCC-eEEEEeccCCC
Q psy11896 265 ----------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDVP-CIAFINKLDRL 332 (1043)
Q Consensus 265 ----------~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 332 (1043)
.++.++++|||||.+|..++.++++.+|++++|||+.+|. ..+|.+++..+...++| +++++||||+.
T Consensus 66 ~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~ 145 (195)
T d1kk1a3 66 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 145 (195)
T ss_dssp BCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred eeeeeeeeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccch
Confidence 2356999999999999999999999999999999999997 67799999999999987 57789999987
Q ss_pred C
Q psy11896 333 G 333 (1043)
Q Consensus 333 ~ 333 (1043)
.
T Consensus 146 d 146 (195)
T d1kk1a3 146 D 146 (195)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.1e-23 Score=195.66 Aligned_cols=98 Identities=26% Similarity=0.458 Sum_probs=91.2
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC--CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||++++|.||++|++|||+|++++..+ +.+.|.|.+|++|+|||+++||+.|+|+|+|+++|+||++++
T Consensus 1 EPi~~v~I~~p~e~~G~V~~~l~~rRG~i~~~~~~~~~~~~~i~a~iP~~e~~gf~~~Lrs~T~G~a~~~~~f~~y~~v~ 80 (117)
T d1n0ua5 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLG 80 (117)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHcCCeEeeeeecCCCceEEEEEECCchhhcCHHHHHHhhCCCCceEEEEeCChhhcc
Confidence 899999999999999999999999999999998763 478999999999999999999999999999999999999997
Q ss_pred HH------HHHHHHHHHHHhcCCchH
Q psy11896 1015 PE------VQDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 1015 ~~------~~~~~~~~~~~~~~~~~~ 1034 (1043)
+| ++++++.+.|++|||..+
T Consensus 81 ~d~~d~~~~a~~~i~~~R~rKgL~~~ 106 (117)
T d1n0ua5 81 SDPLDPTSKAGEIVLAARKRHGMKEE 106 (117)
T ss_dssp SCTTCTTSHHHHHHHHHHHHTTCCSS
T ss_pred CCCcccchhHHHHHHHHHHhCCCCCC
Confidence 65 688999999999999764
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.82 E-value=4.8e-21 Score=162.86 Aligned_cols=77 Identities=30% Similarity=0.563 Sum_probs=74.7
Q ss_pred CCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCee
Q psy11896 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672 (1043)
Q Consensus 595 ~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V 672 (1043)
+|+|+++++|+|.+.+|.+||.+||++|++|||||++.+|++|||++|+||||+|||++++||+ +||+++.+++|+|
T Consensus 1 iP~Pv~~~ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~~d~et~e~vl~g~GelHLei~~~rL~-~~~v~v~~~~P~V 77 (77)
T d2dy1a4 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKV 77 (77)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHHHHHHhhcCeEEEEEcCCchhheEeccccchHHHHHHHHH-HcCCcEEeeCCcC
Confidence 4899999999999999999999999999999999999999999999999999999999999996 6999999999986
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=3.6e-19 Score=165.32 Aligned_cols=104 Identities=42% Similarity=0.755 Sum_probs=93.2
Q ss_pred cceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCC
Q psy11896 487 DKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGD 565 (1043)
Q Consensus 487 ~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGd 565 (1043)
++.+...|+ +++||+|+|||+.+|++ |+++|+|||||+|++||.|++.+++++++|.+||.++|.++++++++.|||
T Consensus 14 ~~~v~~~pd--~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGd 91 (121)
T d2bv3a1 14 GEVVEIHPD--PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGD 91 (121)
T ss_dssp CCEEECCCC--TTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTC
T ss_pred CCEEEeeCC--CCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccCCCEEEEeeeeeeecccccEeeEecccc
Confidence 345667777 89999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC-ccccCcEEecCCCCc-ccccCC
Q psy11896 566 IFALFGV-DCASGDTFVTDKNNS-ISLESI 593 (1043)
Q Consensus 566 Iv~i~gl-~~~~Gdtl~~~~~~~-~~~~~~ 593 (1043)
|++|.|+ ++++||||+ +.+++ +.++++
T Consensus 92 I~~i~gl~~~~~GDTl~-~~~~p~~~le~i 120 (121)
T d2bv3a1 92 LGAVVGLKETITGDTLV-GEDAPRVILESI 120 (121)
T ss_dssp EEEEESCSSCCTTCEEE-ETTSCCCBCSCC
T ss_pred ceEEeccCCceeCCEEe-cCCCCceECCCC
Confidence 9999999 899999999 44443 444443
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=8.1e-20 Score=155.69 Aligned_cols=75 Identities=33% Similarity=0.605 Sum_probs=71.7
Q ss_pred CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecCCe
Q psy11896 596 ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPK 671 (1043)
Q Consensus 596 ~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~p~ 671 (1043)
.+|+++++|+|.+++|++||.+||++|.+||||+++.. +||||++|+||||+|||++++||+++| |+++.+++|.
T Consensus 4 ~~Pv~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v~~-~etge~il~G~GelHLev~~~rL~~~f~~vev~~~~Pi 79 (79)
T d1n0ua4 4 VSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPV 79 (79)
T ss_dssp CSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEE-CTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCC
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEE-cCCCCcEEecCCHHHHHHHHHHHHHHhCCceEEeCCCC
Confidence 47999999999999999999999999999999999975 689999999999999999999999999 9999999984
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.1e-19 Score=179.37 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=79.6
Q ss_pred hcccccCCCcccccceeeccCCCCcccchhhHH--HHHhhhhhhhhhcCccccccccceEEEEecCccccCCCC--hhHH
Q psy11896 841 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF--ILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSN--EISF 916 (1043)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~--~~~~ 916 (1043)
.++.|++|++..|+|++++++....+ +.. .++.+||||||++||||+|||+||+|.|.|+++|+.+++ .+|+
T Consensus 70 ~~~i~~~gp~~~~~ni~vd~t~g~~~----~~~~~~si~~Gf~~a~~~GpL~~epv~gv~~~l~d~~~h~~~~~~~~~qi 145 (165)
T d1n0ua3 70 ARKIWCFGPDGNGPNLVIDQTKAVQY----LHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQI 145 (165)
T ss_dssp HHTEEEESSTTTSSEEEEECCCCCTT----HHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHH
T ss_pred ccceeecccCCCCceEEEeCcccccc----hHHHHHHHHHHHHHHHhhCccCCCcEEeEEEEEEEccccccccCCCcchh
Confidence 46789999999999999987764332 333 268999999999999999999999999999999987654 5799
Q ss_pred HHHHHHHHHHHHHhcCcee
Q psy11896 917 ILAAHGAMKQAYEEGVWQI 935 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~l 935 (1043)
++|+|+|||+||+.|+|||
T Consensus 146 ipa~r~a~~~a~l~a~P~l 164 (165)
T d1n0ua3 146 IPTMRRATYAGFLLADPKI 164 (165)
T ss_dssp HHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999998
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=4.1e-21 Score=161.67 Aligned_cols=75 Identities=39% Similarity=0.729 Sum_probs=42.0
Q ss_pred CCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 595 ~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
+|+|+++++|+|.+.+|.+||.+||++|++|||||++.+|++|||++|+||||+|||++++||+++||++++++.
T Consensus 1 vP~Pv~~~ai~p~~~~D~~kl~~aL~~L~~EDPsl~~~~d~et~e~il~g~GelHLev~~~rL~~~~~vev~~gk 75 (75)
T d2bv3a4 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGK 75 (75)
T ss_dssp CCCCCEECBCCC-------------------CCSCEEEECSSSSCEEEEBSSHHHHTTCC------------CCC
T ss_pred CCCCcEEEEEEECCHhHHHHHHHHHHHHHhhCCceEEEEcCcCCcEEEeeCCHhHHHHHHHHHHHHHCCceEeCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999873
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=4.6e-19 Score=182.45 Aligned_cols=147 Identities=24% Similarity=0.300 Sum_probs=116.4
Q ss_pred ceeeeeecccccccC-----------------CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 5 VKIIHIKQEQVRGKD-----------------NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~-----------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
+.++ |-...||+|. ...+.+|..++|+++|+|++.....++|++++++|+|||||.+|...+
T Consensus 6 i~ii-Ghvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~ 84 (204)
T d2c78a3 6 VGTI-GHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNM 84 (204)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHH
T ss_pred EEEE-eCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHH
Confidence 4455 7777888875 234567999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
.++++.+|++|+|+|+.+|+..|+.++|..+...++| +++++||+|+.+. ++..+++.+.+...+...++ ...
T Consensus 85 ~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~--~~~~~~~~~~i~~~l~~~~~----~~~ 158 (204)
T d2c78a3 85 ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD--PELLDLVEMEVRDLLNQYEF----PGD 158 (204)
T ss_dssp HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTTS----CTT
T ss_pred HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCC--HHHHHHHHHHHHHHHHhcCC----Ccc
Confidence 9999999999999999999999999999999999987 7788999999753 22334444444333332222 223
Q ss_pred ceeeeeeeeccc
Q psy11896 147 YIRNIGISAHID 158 (1043)
Q Consensus 147 ~~~ii~iSa~~g 158 (1043)
..+++++||..+
T Consensus 159 ~i~~i~~sa~~~ 170 (204)
T d2c78a3 159 EVPVIRGSALLA 170 (204)
T ss_dssp TSCEEECCHHHH
T ss_pred cceeeeeechhh
Confidence 345678888654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=1.3e-18 Score=185.20 Aligned_cols=123 Identities=52% Similarity=0.795 Sum_probs=103.5
Q ss_pred eecccccccC------------------CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHh
Q psy11896 10 IKQEQVRGKD------------------NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 10 ~~~~~gk~s~------------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
|-.+.||||. ..++++|+.++|+++|+|+......++|++++++|+|||||.+|..++..++
T Consensus 13 gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l 92 (276)
T d2bv3a2 13 AHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSM 92 (276)
T ss_dssp ECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHH
T ss_pred eCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHHH
Confidence 7777777765 2357899999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
+.+|++|+|||+.+|++.++..+|+++...++|.++++||+|+...+..++++++++.++.
T Consensus 93 ~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~ 153 (276)
T d2bv3a2 93 RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGA 153 (276)
T ss_dssp HHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred HhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999997754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.73 E-value=2.1e-18 Score=175.85 Aligned_cols=146 Identities=24% Similarity=0.254 Sum_probs=117.4
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++.+|..++|+++|+|++.....+.+.+++++++|||||.+|...+.++++.+|++|+|+|+.+|++.|+.+++..+...
T Consensus 38 ~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~ 117 (196)
T d1d2ea3 38 YEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI 117 (196)
T ss_dssp HHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred hhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc----------CCcchHHHHHHh
Q psy11896 102 DV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID----------SGKTTLTERILF 170 (1043)
Q Consensus 102 ~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g----------~Gi~~L~~~l~~ 170 (1043)
++ |+|+++||+|+.. +. +..+.+...+..++...++. ....+++++||++| .|+.+|++.+..
T Consensus 118 ~~~~iIv~iNK~D~~~-~~-~~~~~i~~~i~~~l~~~~~~----~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~ 191 (196)
T d1d2ea3 118 GVEHVVVYVNKADAVQ-DS-EMVELVELEIRELLTEFGYK----GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (196)
T ss_dssp TCCCEEEEEECGGGCS-CH-HHHHHHHHHHHHHHHHTTSC----TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecccccc-cH-HHHHHHHHHHHHHHHHhCCC----cccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence 76 6889999999874 22 23344444343333322221 12357899999999 577888888776
Q ss_pred hcc
Q psy11896 171 YTG 173 (1043)
Q Consensus 171 ~l~ 173 (1043)
+.|
T Consensus 192 ~iP 194 (196)
T d1d2ea3 192 YIP 194 (196)
T ss_dssp HSC
T ss_pred hCC
Confidence 654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.3e-18 Score=183.04 Aligned_cols=155 Identities=26% Similarity=0.297 Sum_probs=122.8
Q ss_pred cccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------
Q psy11896 14 QVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG------- 86 (1043)
Q Consensus 14 ~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~------- 86 (1043)
.++.++.++|++|+.++|+++|+|++.....+.+++++++|+|||||.+|..++.+++..+|++|+||||.+|
T Consensus 48 ~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~ 127 (239)
T d1f60a3 48 LGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 127 (239)
T ss_dssp GSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred hcCCccceeeecccchhhhcceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccC
Confidence 3455666778999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHH
Q psy11896 87 VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165 (1043)
Q Consensus 87 ~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~ 165 (1043)
+..|+.+++..+...++| +|+++||||+.+++..+. +++.+.+..++...+.. ....+++|+||.+|.|+.+..
T Consensus 128 ~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~-~~~~~el~~~l~~~~~~----~~~i~~ipiSa~~G~ni~~~s 202 (239)
T d1f60a3 128 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF-QEIVKETSNFIKKVGYN----PKTVPFVPISGWNGDNMIEAT 202 (239)
T ss_dssp TTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH-HHHHHHHHHHHHHHTCC----GGGCCEEECCTTTCBTTTBCC
T ss_pred chHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHhcCCC----CCcEEEEEEEccCCCcceecc
Confidence 457899999999999998 788999999988776543 33333333333322211 223456899999999987755
Q ss_pred HHHHhhcc
Q psy11896 166 ERILFYTG 173 (1043)
Q Consensus 166 ~~l~~~l~ 173 (1043)
..+.|+.+
T Consensus 203 ~~~~wykg 210 (239)
T d1f60a3 203 TNAPWYKG 210 (239)
T ss_dssp SSCTTCCC
T ss_pred ccCccccC
Confidence 44445443
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=2.5e-18 Score=163.47 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=85.9
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecCC-cc-EEEEEEecCeecCCCEEEecCCC---------cEEEeceEEEeccCCeee
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCYQGKLRKGEMIYNVRTD---------KKVRVSRLVRLHSNEMED 557 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~~-G~-i~~~RV~sGtl~~gd~v~~~~~~---------~~~ki~~l~~~~g~~~~~ 557 (1043)
..+.+|| +++||+++|+|+..+++ |+ ++|+|||||+|++||.|++.+.+ ..++|++||.++|+++++
T Consensus 24 ~~i~~cd--~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~ 101 (138)
T d1n0ua1 24 IAIKNCD--PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEP 101 (138)
T ss_dssp HHHHTTC--TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEE
T ss_pred hhhhccC--CCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceee
Confidence 4457887 99999999999999988 87 69999999999999999987532 347899999999999999
Q ss_pred cCeecCCCEEEEccC-c-cccCcEEecCCCCccccc
Q psy11896 558 VEEVLAGDIFALFGV-D-CASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 558 v~~a~aGdIv~i~gl-~-~~~Gdtl~~~~~~~~~~~ 591 (1043)
|++|.|||||+|.|+ + ...|+||+ +..++.+++
T Consensus 102 v~~a~AGdIvai~Gl~~~i~k~~Tl~-~~~~~~pl~ 136 (138)
T d1n0ua1 102 IDDCPAGNIIGLVGIDQFLLKTGTLT-TSETAHNMK 136 (138)
T ss_dssp ESEEETTCEEEEESCTTTCCSSEEEE-SCTTCCCBC
T ss_pred EeEEecCcEEEEeccccceeccceec-CCCCCccCC
Confidence 999999999999999 4 34699999 555555554
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.7e-17 Score=167.30 Aligned_cols=114 Identities=23% Similarity=0.178 Sum_probs=89.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
..|+++|++|+|||||+++|+.....+ .....++|.........+.+..+.++||||+.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~--------------------~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~ 65 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAP--------------------ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 65 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC--------------------CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--------------------ecccCCcccccccceeeeeeeeeeecccccccc
Confidence 469999999999999999997442111 122456777777777888899999999999865
Q ss_pred c--------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh--cCCCeEEEEeccCCCC
Q psy11896 280 F--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f--------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
. ...+..+++.+|++++|+|+.++...+...+...+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~ 129 (178)
T d1wf3a1 66 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129 (178)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccccc
Confidence 3 2334567788999999999999998888777766654 3679999999999864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.72 E-value=7.3e-18 Score=175.13 Aligned_cols=156 Identities=26% Similarity=0.334 Sum_probs=120.5
Q ss_pred ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHh
Q psy11896 21 VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 100 (1043)
Q Consensus 21 ~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~ 100 (1043)
..+.+|+.+.|+++|+|++.....+.+.+++++|+|||||.+|...+.+++..+|++|+|+|+.+|+..|+.+++..+..
T Consensus 60 ~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~ 139 (222)
T d1zunb3 60 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL 139 (222)
T ss_dssp CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred eeeccccchhhhccCCCceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH
Confidence 33455666889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-cccc
Q psy11896 101 YDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEM 178 (1043)
Q Consensus 101 ~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~ 178 (1043)
.++| +|+++||+|+.+.+.... +.+.+.+..++...++. ....+++|+||++|.|+.+..+.+.||.++ +.+.
T Consensus 140 ~gv~~iiv~vNK~D~~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~i~~IPiSA~~G~ni~~~s~~~~wy~g~tl~e~ 214 (222)
T d1zunb3 140 LGIKHIVVAINKMDLNGFDERVF-ESIKADYLKFAEGIAFK----PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI 214 (222)
T ss_dssp TTCCEEEEEEECTTTTTSCHHHH-HHHHHHHHHHHHTTTCC----CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH
T ss_pred cCCCEEEEEEEccccccccceeh-hhhHHHHhhhhHhhccC----CCceEEEEEEcccCccCCcCcccCCCCcCChHHHH
Confidence 9987 789999999987665433 34333333333332221 223567999999999998887778888876 5555
Q ss_pred ccc
Q psy11896 179 HET 181 (1043)
Q Consensus 179 ~~~ 181 (1043)
++.
T Consensus 215 ld~ 217 (222)
T d1zunb3 215 LET 217 (222)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.72 E-value=3.7e-18 Score=172.41 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=117.4
Q ss_pred cceeeeeecccccccCCc-------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCE
Q psy11896 4 KVKIIHIKQEQVRGKDNV-------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDG 76 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~-------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~ 76 (1043)
++-|+ |...+||+|..- ....|+.+.++.+|+|++.....+.+++..+.++||||+.+|...+..++..+|+
T Consensus 7 nIaii-G~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~ 85 (179)
T d1wb1a4 7 NLGIF-GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDL 85 (179)
T ss_dssp EEEEE-ECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCE
T ss_pred EEEEE-eCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhccc
Confidence 35567 899999999833 2345778889999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+++|+|++++...++.+++.++...++|+++|+||+|+.+.+..+..+.+.+.+. ...+.....+++||||+
T Consensus 86 ~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 86 ALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL--------QSTHNLKNSSIIPISAK 157 (179)
T ss_dssp EEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH--------HHSSSGGGCCEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHH--------HHhhcCCCCeEEEEEcc
Confidence 9999999999999999999999999999999999999986443322222222211 11123445688999999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|+|+++|++.+...+++
T Consensus 158 ~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCc
Confidence 999999999999987764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.71 E-value=4.7e-17 Score=172.82 Aligned_cols=124 Identities=22% Similarity=0.336 Sum_probs=111.1
Q ss_pred eeeeeecccccccC------------------CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 6 KIIHIKQEQVRGKD------------------NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~------------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
.++ |-.+.||||. .-++++|+.++|+++|+|+......++|++++++|+|||||.+|..++
T Consensus 6 ~ii-Gh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~ 84 (267)
T d2dy1a2 6 ALV-GHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEI 84 (267)
T ss_dssp EEE-ESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHH
T ss_pred EEE-cCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhhh
Confidence 344 7778888776 135788999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
..+++.+|++|+|+|+.+|++.++..+|+++.+.++|.++++||+|.. .+..+.++.+++.++
T Consensus 85 ~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~-~~~~~~l~~~~~~lg 147 (267)
T d2dy1a2 85 RGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 147 (267)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred hhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc-ccchhhhhhHHHHhc
Confidence 999999999999999999999999999999999999999999999984 566666777776654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.1e-16 Score=162.43 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=89.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.....+ .....++|.......+.+++..+.++||||+..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~ 68 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERAL--------------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEE--------------------ECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcce--------------------eecccccccccceeeeccCCceeeeeccCCccc
Confidence 579999999999999999998433221 111334555555666788999999999999643
Q ss_pred ------------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 ------------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 ------------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+...+..+++.+|++++|+|+..+...++..+..++...+.|+++|+||+|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~ 133 (186)
T d1mkya2 69 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 133 (186)
T ss_dssp ---------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred cccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhh
Confidence 44567888899999999999999999999999999999999999999999976
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.66 E-value=6.9e-17 Score=145.70 Aligned_cols=87 Identities=26% Similarity=0.473 Sum_probs=80.2
Q ss_pred CCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccc
Q psy11896 498 GKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCA 575 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~ 575 (1043)
+++||+++|||+.+|++ |+++|+|||||+|+.||+|++.+ ..+++.+++.++|.++++++++.||||++|.|+ +++
T Consensus 6 ~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~--~~~~~~~~~~~~~~~~~~v~~~~aGdI~~v~g~~~~~ 83 (103)
T d2dy1a1 6 GDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLH 83 (103)
T ss_dssp CSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCC
T ss_pred CCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEee--cccccceeeeeecCcceecCEecCCCEEEEeCCCCCc
Confidence 78999999999999998 99999999999999999998865 457899999999999999999999999999999 899
Q ss_pred cCcEEecCCCCc
Q psy11896 576 SGDTFVTDKNNS 587 (1043)
Q Consensus 576 ~Gdtl~~~~~~~ 587 (1043)
+||||+ +.+.+
T Consensus 84 iGDTl~-~~~~p 94 (103)
T d2dy1a1 84 RGMVLW-QGEKP 94 (103)
T ss_dssp TTCEEE-SSSCC
T ss_pred cCCEEc-CCCCc
Confidence 999999 54433
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=3.8e-16 Score=156.14 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=85.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
.|+++|++|+|||||+++|+.....+ .+...++|.......+...+..+.++||||..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 61 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAI--------------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------------------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcce--------------------ecccCceeeccccccccccccccccccccceeee
Confidence 58999999999999999997432211 223456777777777888999999999999644
Q ss_pred --------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 --------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 --------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+...+..++..+|.+++++|+.++...+...++..+...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~ 122 (171)
T d1mkya1 62 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122 (171)
T ss_dssp GGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred eccccccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhh
Confidence 22334566788999999999999999999999999999999999999999975
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=2.2e-16 Score=159.02 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=119.3
Q ss_pred cceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~a 74 (1043)
++.++ |..++||+|...+.+..+ ......+++|++.........+.++.+|||||+.. +...+..+++.|
T Consensus 7 ~I~lv-G~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 7 FVAIV-GKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence 44555 999999998865544433 23467899999999999999999999999999853 445566778899
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|++|+|+|++.+....+..+...++.. ++|+++|+||+|+.+. .++..+.+.+. .....+++
T Consensus 86 d~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~---------------~~~~~~~~ 149 (178)
T d1wf3a1 86 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY-PEEAMKAYHEL---------------LPEAEPRM 149 (178)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS-HHHHHHHHHHT---------------STTSEEEE
T ss_pred cceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccC-HHHHHHHHHhh---------------cccCceEE
Confidence 999999999998888887777777653 6799999999999753 33333443332 22346688
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|+++|++.+...+++
T Consensus 150 iSA~~~~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 150 LSALDERQVAELKADLLALMPE 171 (178)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCB
T ss_pred EecCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999988865
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.64 E-value=4.3e-17 Score=172.16 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=90.4
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTL 92 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~ 92 (1043)
..++.+|....|+++|+|++.....+.+++.+++++|||||.+|...+.++...+|++++|+|+.+|+ ..|+.
T Consensus 72 ~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~ 151 (245)
T d1r5ba3 72 YLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR 151 (245)
T ss_dssp ----------------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH
T ss_pred hhhhhhhccccccccCccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchH
Confidence 44688899999999999999999999999999999999999999999999999999999999999875 34888
Q ss_pred HHHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHH--H
Q psy11896 93 TVNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER--I 168 (1043)
Q Consensus 93 ~~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~--l 168 (1043)
+++..+...++| +++++||+|++..+ .+...+++.+.+...+.... ........+++|+||++|+|+.++.+. +
T Consensus 152 e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~--~~~~~~~v~~VPiSA~~G~nI~~~~~s~~~ 229 (245)
T d1r5ba3 152 EHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA--GYNSKTDVKYMPVSAYTGQNVKDRVDSSVC 229 (245)
T ss_dssp HHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHH--CCCHHHHEEEEECBTTTTBTTSSCCCTTTC
T ss_pred HHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHh--CcCcccCCEEEEeeccCCCCcccchhccCC
Confidence 999988888987 78999999997543 22223333333332222110 011122357899999999999998655 4
Q ss_pred Hhhccc-ccccc
Q psy11896 169 LFYTGR-ISEMH 179 (1043)
Q Consensus 169 ~~~l~~-~~~~~ 179 (1043)
.||.++ +.+.+
T Consensus 230 ~wy~G~tl~~~l 241 (245)
T d1r5ba3 230 PWYQGPSLLEYL 241 (245)
T ss_dssp SSCCSCCHHHHH
T ss_pred CCCCCchHHHHH
Confidence 577766 44443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.64 E-value=2.8e-17 Score=171.81 Aligned_cols=158 Identities=24% Similarity=0.315 Sum_probs=110.9
Q ss_pred ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHHH
Q psy11896 21 VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLT 93 (1043)
Q Consensus 21 ~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~~ 93 (1043)
.++++|+.++|+++|+|++.....++++++.++|+|||||.+|..++.++++.+|++|+|||+.+|+ ..|+.+
T Consensus 52 ~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e 131 (224)
T d1jnya3 52 FAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE 131 (224)
T ss_dssp HHHHHHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH
T ss_pred ccccccCchhhhcCCccccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH
Confidence 3557899999999999999999999999999999999999999999999999999999999999885 456777
Q ss_pred HHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 94 VNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 94 ~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++..+...+++ +|+++||+|+...+ ....++.+...+..++...+.. ....+++|+||.+|.|+.+..+.+.||
T Consensus 132 ~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~----~~~i~~IPISA~~G~NV~~~s~~~~wy 207 (224)
T d1jnya3 132 HIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN----TNKVRFVPVVAPSGDNITHKSENMKWY 207 (224)
T ss_dssp HHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCC----CTTCEEEECBTTTTBTTTBCCSSCTTC
T ss_pred HHHHHHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCC----cccCeEEEEEccCCCCcccccccCCCc
Confidence 77777777775 88899999987532 2223344444444333332221 223567899999999998877778888
Q ss_pred ccc-cccccccc
Q psy11896 172 TGR-ISEMHETS 182 (1043)
Q Consensus 172 l~~-~~~~~~~~ 182 (1043)
.++ +.+.++..
T Consensus 208 ~~~~L~~~Ld~i 219 (224)
T d1jnya3 208 NGPTLEEYLDQL 219 (224)
T ss_dssp CSCCHHHHHTTC
T ss_pred ccccHHHHHhcC
Confidence 887 44444443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=4.1e-16 Score=167.89 Aligned_cols=232 Identities=19% Similarity=0.151 Sum_probs=140.0
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCC
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
...++...+..+|++|+|+||+.+.+..+..+.+.++ ++|.|+|+||+|+... ...+.+.+++.
T Consensus 5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~---~~~~~w~~~f~----------- 68 (273)
T d1puja_ 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA---AVTQQWKEHFE----------- 68 (273)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH---HHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch---HHHHHHHHHHH-----------
Confidence 4456778899999999999999999988888777664 7899999999999752 22334444332
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.....++.+|+.++.|...+.+.+...+.+..+....... ...-.+|+|+|.+|+|||||+|+|...
T Consensus 69 --~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~v~vvG~PNvGKSsliN~L~~~ 135 (273)
T d1puja_ 69 --NQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGV-----------KPRAIRALIIGIPNVGKSTLINRLAKK 135 (273)
T ss_dssp --TTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTC-----------CCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred --hcCCccceeecccCCCccccchhhhhhhhhhhhhhhhccC-----------CCCceEEEEEecCccchhhhhhhhhcc
Confidence 1123567899999999999988887776653333222211 122367999999999999999999853
Q ss_pred cCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC--Cc-hHHHHHHhHhcCeEEEEEe
Q psy11896 223 TGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV--DF-TVEVERALRVLDGAILVLC 299 (1043)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~--df-~~e~~~~l~~~D~~ilVvd 299 (1043)
... .....+|+|.+...+. .+..+.++||||.. .+ ..+....+..++++ -|
T Consensus 136 ~~~--------------------~~~~~pG~Tr~~~~i~---~~~~~~l~DTPGi~~p~~~~~~~~~~la~~~~i---~~ 189 (273)
T d1puja_ 136 NIA--------------------KTGDRPGITTSQQWVK---VGKELELLDTPGILWPKFEDELVGLRLAVTGAI---KD 189 (273)
T ss_dssp CCC--------------------------------CCEE---ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSS---CT
T ss_pred ceE--------------------EECCcccccccceEEE---CCCCeEEecCCCccccCCccHHHHhhhhhcCCc---ch
Confidence 221 1334778887765543 36779999999963 22 23333333333321 12
Q ss_pred CCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 300 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 300 a~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
...+.......++..+.+.....+....++|....+..+.++.+.++.+.
T Consensus 190 ~~~~~~~~~~~ll~~l~~~~~~~l~~~~~~~~~~~d~~~~l~~ia~~~g~ 239 (273)
T d1puja_ 190 SIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGC 239 (273)
T ss_dssp TSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHHHHHHTC
T ss_pred hhcchhhHHHHHHHHHHHhChHhhhHhcCCCCCCCCHHHHHHHHHHHhCC
Confidence 22333333333333332222112222344555556778888888887763
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=3.9e-16 Score=157.81 Aligned_cols=108 Identities=27% Similarity=0.364 Sum_probs=79.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
.|+++|++|+|||||+|+|+...-. .+..+|+|.+. ..+.+++ +.++||||+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~---------------------~~~~~g~T~~~--~~~~~~~--~~ivDtpG~~~~ 56 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKI--IEIEWKN--HKIIDMPGFGFM 56 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS---------------------SSSSTTCTTSC--EEEEETT--EEEEECCCBSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---------------------eeCCCCEeecc--ccccccc--ceecccCCceec
Confidence 5899999999999999999743211 12245666553 3345544 67899999632
Q ss_pred --------------chHHHHHHhHhcCeEEEEEeCC-----------CCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 --------------FTVEVERALRVLDGAILVLCAV-----------GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 --------------f~~e~~~~l~~~D~~ilVvda~-----------~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+..+++.+|++++|+|+. .+...+...++..+...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~ 135 (184)
T d2cxxa1 57 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 135 (184)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhh
Confidence 1122345567899999999996 36677778888888889999999999999864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=2.6e-15 Score=153.38 Aligned_cols=119 Identities=14% Similarity=0.226 Sum_probs=82.0
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINI 271 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 271 (1043)
..+|...+++|+|+|++|+|||||+|+|+...... . .....+.|..... .+....+.+
T Consensus 16 ~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~-~------------------~~~~~~~t~~~~~---~~~~~~~~~ 73 (195)
T d1svia_ 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLA-R------------------TSSKPGKTQTLNF---YIINDELHF 73 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------CCEEE---EEETTTEEE
T ss_pred hHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceE-E------------------eecccceeeeccc---ccccccceE
Confidence 45566678899999999999999999998432110 0 0112223322222 122456677
Q ss_pred EcCCCCCC-------------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 272 IDTPGHVD-------------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 272 iDtPG~~d-------------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|++|... +......+...+|++++|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~ 147 (195)
T d1svia_ 74 VDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp EECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred EEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhcccc
Confidence 88888421 12233445567799999999999999999999999999999999999999976
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.59 E-value=2e-15 Score=154.29 Aligned_cols=157 Identities=21% Similarity=0.213 Sum_probs=116.2
Q ss_pred eeeeeecccccccCCc---cccCCChhhhhhcCCccccceEEEEec-----------------------CeeEEEEeCCC
Q psy11896 6 KIIHIKQEQVRGKDNV---GAVMDSMELERQRGITIQSAATYTLWK-----------------------DHNINIIDTPG 59 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~---~~~~d~~~~e~~~G~T~~~~~~~~~~~-----------------------~~~i~liDTPG 59 (1043)
-++ |.-..||+|..- ....|..+.+.++|+|++..+..+.+. ..+++++||||
T Consensus 9 aii-Ghvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPG 87 (195)
T d1kk1a3 9 GMV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPG 87 (195)
T ss_dssp EEE-CSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSS
T ss_pred EEE-eccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeeccch
Confidence 445 766779988832 334578888999999998766544321 24599999999
Q ss_pred CcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHHHHHHHHhhhhcccc
Q psy11896 60 HVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKTSRWISN 136 (1043)
Q Consensus 60 ~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~ 136 (1043)
|.+|...+.+++..+|++++|+|+.++. ..++.+++..+...++| +++++||+|+.+... ....+.+.+.+. .
T Consensus 88 h~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~----~ 163 (195)
T d1kk1a3 88 HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE----G 163 (195)
T ss_dssp HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT----T
T ss_pred hhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhc----c
Confidence 9999999999999999999999999986 56678888888888877 788999999975321 112233333221 1
Q ss_pred ccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 137 ESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 137 ~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++|+||++|+|+++|++.+..++|
T Consensus 164 ------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 164 ------TVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp ------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1223457899999999999999999988775
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.58 E-value=4.6e-16 Score=162.95 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=94.9
Q ss_pred EecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHH-----
Q psy11896 46 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY----- 120 (1043)
Q Consensus 46 ~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~----- 120 (1043)
.+++.+++|+|||||.+|...+..++..+|++|+|+||.+|+..++..++.++...++|+|+|+||+|+...+..
T Consensus 66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~ 145 (227)
T d1g7sa4 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRP 145 (227)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred cccccccccccccceecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999998653310
Q ss_pred --------------HHHHHHHHhhhhccc----ccccc-CCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 121 --------------RVINQMRQKTSRWIS----NESLS-EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 121 --------------~~~~~l~~~~~~~~~----~~~l~-~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.....+.+....... ...+. ......+.+++|+||++|.|+++|++.+.....+
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 011111111111100 00000 1112334688999999999999999998766543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.58 E-value=1.6e-15 Score=156.23 Aligned_cols=115 Identities=28% Similarity=0.256 Sum_probs=91.6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCHHHH-HHHH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRV-INQM 126 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~~~~-~~~l 126 (1043)
.+++++|||||.+|...+..++..+|++|+|+|+.+++ ..++.+++..+...++ |+|+++||+|+.+.+.... ...+
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~ 165 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 165 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHH
Confidence 46999999999999999999999999999999999996 7788899999888886 6889999999976432211 2222
Q ss_pred HHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 127 RQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+.+. .......+++|+||++|.|+++|++.+.|+.|+
T Consensus 166 ~~~l~----------~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 166 KQFTK----------GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHT----------TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHhc----------cccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 22221 122334578999999999999999999999773
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=6.6e-15 Score=145.03 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=87.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
+|+++|++|+|||||+|+|+...... .....+.|.......+.+.+..+.++||||+..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 61 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAI--------------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCC--------------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee--------------------eeccccccccceeEEEEeCCeeEEeccccccccC
Confidence 69999999999999999997542211 122445666666777888999999999999532
Q ss_pred -------c-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 -------F-TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 -------f-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+ ...+..+++.+|++++|+|+.++...+...++.+. ...++++++||+|...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~ 121 (160)
T d1xzpa2 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 121 (160)
T ss_dssp CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccc
Confidence 2 24566778899999999999999998888777654 5678999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=1.7e-15 Score=151.22 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=111.1
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhhc
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRVL 74 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~a 74 (1043)
+.++ |..++||+|+..+.+.... ..+..+|+|+......+...+.++.++||||+.. ....+..++..+
T Consensus 3 V~li-G~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 3 VLIV-GRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEE-CCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEE-CCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 4455 9999999999766554333 3578899999999999999999999999999742 445667788999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|++++++|++.+...++..+..++...++|+|+|+||+|+.+... .++.+.+ ....+.+++++|
T Consensus 82 d~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~----~~~~~~~------------~~~~~~~~i~iS 145 (171)
T d1mkya1 82 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE----REVKPEL------------YSLGFGEPIPVS 145 (171)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH----HHTHHHH------------GGGSSCSCEECB
T ss_pred cEEEEeecccccccccccccccccccccccccccchhhhhhhhhh----hHHHHHH------------HhcCCCCeEEEe
Confidence 999999999999999998888888889999999999999863211 1111111 112334678999
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|+++|++.+...+++
T Consensus 146 Ak~g~gid~L~~~i~~~l~e 165 (171)
T d1mkya1 146 AEHNINLDTMLETIIKKLEE 165 (171)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999887764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=5e-15 Score=149.13 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeee-EEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAA-TYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~-~~~~~~~~~i~liDtPG~~ 278 (1043)
.+||++|++|+|||||+|+|+.....+.. ..+.|..... .....++..+.++||||+.
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 60 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP---------------------YPFTTLSPNLGVVEVSEEERFTLADIPGII 60 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC---------------------CTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec---------------------cCCCceeeeeceeeecCCCeEEEcCCCeee
Confidence 46999999999999999999743221110 1122222222 2233456789999999954
Q ss_pred C-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH-----HhcCCCeEEEEeccCCCC
Q psy11896 279 D-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM-----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~-----~~~~~p~ivviNKiD~~~ 333 (1043)
+ ....+.+.+..+|.+++++|+............... ...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 127 (180)
T d1udxa2 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 127 (180)
T ss_dssp CCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred cCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 3 345677888999999999999865433333222222 234689999999999864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.56 E-value=3.2e-14 Score=142.45 Aligned_cols=115 Identities=21% Similarity=0.183 Sum_probs=83.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++-.+|+++|.+|+|||||+++|.... ... .....|++ ...+.+++..+.++|+||
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~--~~~------------------~~~~~~~~----~~~i~~~~~~~~i~d~~g 69 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASED--ISH------------------ITPTQGFN----IKSVQSQGFKLNVWDIGG 69 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CEE------------------EEEETTEE----EEEEEETTEEEEEEECSS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCC--CCc------------------ceeeeeee----EEEeccCCeeEeEeeccc
Confidence 344679999999999999999996321 111 01122333 234667889999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH----HhcCCCeEEEEeccCCCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM----KRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~----~~~~~p~ivviNKiD~~~~~ 335 (1043)
+..|...+...++.+|++++|+|+.+....+.. ..+... ...++|+++|.||+|+....
T Consensus 70 ~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~ 133 (176)
T d1fzqa_ 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (176)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred cccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc
Confidence 999999999999999999999999875433322 222222 23468999999999997543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=8.3e-15 Score=144.44 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=83.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+.....+ .....|++.......+.+.+..+.++||||..+.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 62 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREAAI--------------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSC--------------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceE--------------------eecccccccceEeeeeeccCceeeeccccccccc
Confidence 69999999999999999998543221 1124455666666678889999999999998664
Q ss_pred hH--------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 281 TV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~--------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.. .+..+++.+|++++++|+...........|....+ .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~ 125 (161)
T d2gj8a1 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 125 (161)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred cccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhh
Confidence 32 23456789999999999997665555555443333 378999999999964
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=5.9e-15 Score=149.27 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=73.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~ 278 (1043)
-+|||+|++|+|||||+|+|+.....+ ....+.|.........+ ++..+.++||||+.
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~---------------------~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~ 60 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKI---------------------ADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE---------------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCce---------------------ecCCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence 469999999999999999997443211 11344555555545554 45689999999963
Q ss_pred C-------chHHHHHHhHhcCeEEEEEeCCC--CcchHHHHH----HHHHH---hcCCCeEEEEeccCCCC
Q psy11896 279 D-------FTVEVERALRVLDGAILVLCAVG--GVQSQTLTV----NRQMK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d-------f~~e~~~~l~~~D~~ilVvda~~--g~~~~t~~~----~~~~~---~~~~p~ivviNKiD~~~ 333 (1043)
+ ....+...+..++.++++++... +........ +.... ..++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~ 131 (185)
T d1lnza2 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 131 (185)
T ss_dssp HHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence 2 33456677788999988887663 222211111 11111 13579999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=7.5e-15 Score=148.15 Aligned_cols=154 Identities=22% Similarity=0.221 Sum_probs=112.5
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------------hHHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------------FTVEVER 69 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------------~~~~~~~ 69 (1043)
+.++ |.+++||+|...+.+......+..||+|++... +.+. .+.+|||||+.. +...+..
T Consensus 3 I~lv-G~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 3 IIFA-GRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEE-EBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--cccc--cceecccCCceeccccccccccccchhhhhhhhh
Confidence 4455 999999999876666555667789999998654 3333 477899999731 2334556
Q ss_pred HhhhcCEEEEEEeCC-----------CCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccccc
Q psy11896 70 ALRVLDGAILVLCAV-----------GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~-----------~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~ 138 (1043)
.++.+|++++|+|++ .+....+.+++..+...++|+++|+||+|+.. +.+...+.+.+.+...
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~-~~~~~~~~~~~~~~~~----- 151 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVINFLAEKFEVP----- 151 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS-CHHHHHHHHHHHHTCC-----
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhh-hHHHHHHHHHHHhccc-----
Confidence 678899999999986 34566777788888889999999999999875 3444445554443211
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.......++++||++|.|+++|++.+.+.++
T Consensus 152 ----~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 152 ----LSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp ----GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----ccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 1112235689999999999999999987765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.52 E-value=6.6e-14 Score=138.49 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=81.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|+.|+|||||+++|... .... + ...|+......+..++..+++||+||+..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~--~~~~--------------~-------~~~T~~~~~~~~~~~~~~~~i~D~~G~~~ 59 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASG--QFNE--------------D-------MIPTVGFNMRKITKGNVTIKLWDIGGQPR 59 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS--CCCC--------------S-------CCCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcC--CCCC--------------c-------ccccceeeeeeeeeeeEEEEEeecccccc
Confidence 57999999999999999999632 1100 0 01234444455678899999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~~ 334 (1043)
|.......+..+|++++|+|+.+...-. ....+..+ ...++|+++|.||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~ 119 (164)
T d1zd9a1 60 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119 (164)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence 9888889999999999999998643222 22233333 2347899999999998643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.2e-15 Score=148.37 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=114.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...+.+.+.++.+..++++.+.....+..++. ++.+|||||++++...+..+++.+|++++
T Consensus 5 ~~Ki~lv-G~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 5 LFKIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 4899998 99999999999998889999899999988888877777664 68899999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+... ...+..+. ..+.|+++|.||+|+.+.. ..+..+.+.+.. . .+++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~-------------~---~~~~~~ 147 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-------------D---MYYLET 147 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-------------T---CCEEEC
T ss_pred eeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhC-------------C---CEEEEE
Confidence 999886433222 22333332 2357899999999986421 111122222221 1 245789
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|+++++..++.
T Consensus 148 SAktg~gV~e~f~~l~~ 164 (171)
T d2ew1a1 148 SAKESDNVEKLFLDLAC 164 (171)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999999877653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=8.8e-15 Score=145.73 Aligned_cols=154 Identities=16% Similarity=0.050 Sum_probs=113.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...+...+.++.+..+..+.+.....+...+ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 5 ~~Ki~vv-G~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 5 MFKILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4789999 9999999999988888888888887777776666666554 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.... ..+.... ....|+++++||+|+.... ..+....+.+.. . .+++.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~-------------~---~~~~e~ 147 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-------------G---FEFFEA 147 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---CEEEEC
T ss_pred EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHc-------------C---CEEEEe
Confidence 9999864332222 2222222 2356799999999986431 112222232221 1 256889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.++..+
T Consensus 148 Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 148 SAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999888643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.7e-15 Score=144.93 Aligned_cols=154 Identities=17% Similarity=0.075 Sum_probs=117.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |+.++||||...++..+.++.+..++++.......+..++ +.+.+|||||+.++...+..+++.+|++++|
T Consensus 1 fKv~vv-G~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv 79 (164)
T d1yzqa1 1 FKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV 79 (164)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred CEEEEE-CCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEe
Confidence 899999 9999999999999998999999999888877776766655 4789999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|.++..+.... ..+.... ..+.|+++|.||+|+.+.. ..+....+.+. .. .+.+.+|
T Consensus 80 ~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~e~S 143 (164)
T d1yzqa1 80 YDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-------------LN---VMFIETS 143 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------TT---CEEEECC
T ss_pred eccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHH-------------cC---CEEEEec
Confidence 999865433332 2222222 2468899999999986422 11111222221 11 2457899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.++..++
T Consensus 144 Ak~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 144 AKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp TTTCTTHHHHHHHHHHHSC
T ss_pred CCCCcCHHHHHHHHHHhhC
Confidence 9999999999999987664
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.2e-14 Score=144.34 Aligned_cols=152 Identities=14% Similarity=0.030 Sum_probs=114.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...++..+.++.+..++++.+.....+..++. .+.+|||||+.++...+..+++.+|++|+
T Consensus 4 ~~Kivlv-G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 4 IFKYIII-GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 4799999 99999999999999999999988888888777777776654 79999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+... ...+..+. ....|++++.||+|+.... ..+....+.+.. . .+++.+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~e~ 146 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-------------G---LLFLEA 146 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------T---CEEEEC
T ss_pred EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHc-------------C---CEEEEE
Confidence 999986433222 22233332 2356899999999985321 111122222211 1 356789
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 147 Saktg~~v~e~f~~i~~ 163 (166)
T d1z0fa1 147 SAKTGENVEDAFLEAAK 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 99999999999988864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.49 E-value=2.5e-14 Score=141.58 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=113.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
++|+.++ |.+++||||.......+.+..+..| |.......+..++..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 e~ki~i~-G~~~~GKTsLl~~l~~~~~~~~~~~--T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 78 (164)
T d1zd9a1 2 EMELTLV-GLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 78 (164)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHcCCCCCcccc--cceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccc
Confidence 4688888 9999999999887777777665555 666677778889999999999999999999999999999999999
Q ss_pred eCCCCCchhH-HHHHHHH-H---hcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 82 CAVGGVQSQT-LTVNRQM-K---RYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 82 Da~~~~~~~~-~~~~~~l-~---~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+++...... ...+..+ . ..++|+++|+||+|+.+.. ..+..+.+... . ......+++++||
T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~---------~---~~~~~~~~~e~Sa 146 (164)
T d1zd9a1 79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS---------A---IQDREICCYSISC 146 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG---------G---CCSSCEEEEECCT
T ss_pred ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHH---------H---HHhCCCEEEEEeC
Confidence 9986433222 2222222 2 2478999999999997543 32222222111 0 0112346789999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|+++++++|..+
T Consensus 147 ~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 147 KEKDNIDITLQWLIQH 162 (164)
T ss_dssp TTCTTHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHc
Confidence 9999999999998764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=2.8e-14 Score=144.21 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=118.2
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc------------hHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVD------------FTVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~------------~~~~~~~ 69 (1043)
+|+.++ |..++||+|..-+.+... ......+++|+......+.+++..+.++||||+.. ....+..
T Consensus 9 ~kV~ii-G~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T d1mkya2 9 IKVAIV-GRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 87 (186)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHH
Confidence 677788 999999999976655433 34567788999998889999999999999999853 3456778
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++.+|++++|+|+..+...+...+..++...++|+|+|+||+|+..... ...+++.+.+.... ....+.+
T Consensus 88 ~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~ 158 (186)
T d1mkya2 88 SIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-KRYDEFTKLFREKL--------YFIDYSP 158 (186)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-GCHHHHHHHHHHHC--------GGGTTSC
T ss_pred HHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchh-hhhhhHHHHHHHHh--------cccCCCe
Confidence 88999999999999999999999999999999999999999999865322 12222222222111 1234567
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|+++|++.+...+.
T Consensus 159 i~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 159 LIFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999876543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.48 E-value=3.2e-14 Score=140.81 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|.... . ...+.|+......+.+++..+.+|||||+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~--~----------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 58 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGED--V----------------------DTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 58 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--C----------------------SSCCCCSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC--C----------------------CcccceEeeeeeeccccccceeeeecCcchh
Confidence 469999999999999999995321 0 0122344445556788999999999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHH----HhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM----KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~----~~~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++++|+|+.+-... .....|... ...++|+++|.||+|+...
T Consensus 59 ~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 118 (165)
T d1ksha_ 59 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118 (165)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence 877777788999999999998864322 233333333 2356899999999998643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.5e-15 Score=146.89 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=107.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |+.++||||...++..+.+..+..|.+..+.....+..++ ..+.+|||||+..+...+..+++.+|++++|
T Consensus 4 ~Ki~vv-G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 4 FKLVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEE-ECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred EEEEEE-CCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 899999 9999999999998888888888888666555555555544 5799999999999888888899999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+|+++..+..... .+..+. ..++|+++|+||+|+............. .... .+.+.+||++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~-------------~~~~---~~~~e~Sak~ 146 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFH-------------RKKN---LQYYDISAKS 146 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHH-------------SSCS---SEEEEEBTTT
T ss_pred cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHH-------------HHcC---CEEEEEeCCC
Confidence 9998754433222 222221 3478999999999986543211001111 1112 2557899999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|.|++++++.+...+
T Consensus 147 ~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 147 NYNFEKPFLWLARKL 161 (170)
T ss_dssp TBTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988644
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.48 E-value=1.9e-14 Score=142.53 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=112.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||||...+...+.. .+.+.|.......+..++..+.+|||||+..+...+..+++.+|++++|+
T Consensus 2 ~~ki~iv-G~~~~GKTsLi~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 77 (165)
T d1ksha_ 2 ELRLLML-GLDNAGKTTILKKFNGEDV---DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 77 (165)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHTTCCC---SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEE-CCCCCCHHHHHHHHcCCCC---CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence 4788888 9999999999877665544 34567888888888899999999999999999888889999999999999
Q ss_pred eCCCCCchhH-HHHHH-HH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT-LTVNR-QM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~-~~~~~-~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ...+. .+ ...++|+++|+||+|+.+.... ++....+. +.. ......+++++||+
T Consensus 78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~Sa~ 146 (165)
T d1ksha_ 78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALE-------LDS-IRSHHWRIQGCSAV 146 (165)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGG-CCSSCEEEEECCTT
T ss_pred ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH---HHHHHHHH-------hhh-hhcCCCEEEEEECC
Confidence 9886433322 22222 22 2356899999999999754322 12222211 000 11123567899999
Q ss_pred ccCCcchHHHHHHhh
Q psy11896 157 IDSGKTTLTERILFY 171 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~ 171 (1043)
+|+|++++++.|.+.
T Consensus 147 ~g~gv~e~~~~l~~~ 161 (165)
T d1ksha_ 147 TGEDLLPGIDWLLDD 161 (165)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999987654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.6e-14 Score=143.65 Aligned_cols=150 Identities=13% Similarity=-0.032 Sum_probs=92.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |+.++||||.........+..+. .++.+.....+..++ +.+.+|||||+.++...+..+++.+|++|+|
T Consensus 2 fKi~lv-G~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv 78 (168)
T d2gjsa1 2 YKVLLL-GAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 78 (168)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred eEEEEE-CCCCcCHHHHHHHHhCCccCCcC--Ceeeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence 899999 99999999987666555443322 222222233445554 4789999999999999899999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+..... .+..+. ...+|+++|+||+|+.... .....+.+.+.. . .+++.+
T Consensus 79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~e~ 142 (168)
T d2gjsa1 79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-------------D---CKFIET 142 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---SEEEEC
T ss_pred ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc-------------C---CEEEEE
Confidence 9998644433322 222222 2357999999999986431 111122222221 1 245779
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.++..
T Consensus 143 Sak~~~~v~~~f~~l~~~ 160 (168)
T d2gjsa1 143 SAALHHNVQALFEGVVRQ 160 (168)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHH
Confidence 999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.47 E-value=8.8e-14 Score=139.15 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=109.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++||+|...+...+.+... .+ |.......+.+.++.+.+||+||+..+...+..+++.+|++|+|+
T Consensus 16 ~~kI~vv-G~~~vGKSsLi~~l~~~~~~~~-~~--~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 91 (176)
T d1fzqa_ 16 EVRILLL-GLDNAGKTTLLKQLASEDISHI-TP--TQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (176)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHCCSCCEEE-EE--ETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHhcCCCCcc-ee--eeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence 4688888 9999999999877766665322 12 233345566778899999999999999999999999999999999
Q ss_pred eCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++........ .+... ...++|+++|+||+|+.+..... .+.+.+... . ......+++++||+
T Consensus 92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~---~~~~~~~~~-----~---~~~~~~~~~~~SA~ 160 (176)
T d1fzqa_ 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS---EIAEGLNLH-----T---IRDRVWQIQSCSAL 160 (176)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH---HHHHHTTGG-----G---CCSSCEEEEECCTT
T ss_pred ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHH---HHHHHHHHH-----H---HHhcCCEEEEEeCC
Confidence 998754433322 22222 23468999999999997654332 222222100 0 01123567899999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|++++++++.+
T Consensus 161 tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 161 TGEGVQDGMNWVCK 174 (176)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=7.9e-14 Score=138.67 Aligned_cols=116 Identities=21% Similarity=0.144 Sum_probs=78.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+.+|+++|..|+|||||+++|+...-.. . .....+.+..............+++|||||+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~ 64 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTP--------A-----------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS--------S-----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCc--------c-----------cccccccceeeEEEEeecceEEEEEEECCCc
Confidence 35689999999999999999997321000 0 0112233333333333333468999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH---hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~---~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++|+|+|..+.-...... .+.... ....|++++.||+|..
T Consensus 65 e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 123 (169)
T d3raba_ 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123 (169)
T ss_dssp GGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG
T ss_pred hhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc
Confidence 999888888899999999999999753333322 222222 2356788899999965
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.9e-14 Score=140.41 Aligned_cols=147 Identities=15% Similarity=0.076 Sum_probs=110.2
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+.+..+ ......||+|++.....+.+.+..+.++||||+.+ ....+..++..
T Consensus 2 ~kI~lv-G~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 2 MKVVIA-GRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 578888 999999998754444322 22467899999999999999999999999999864 23445677899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHH-Hh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQM-KR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l-~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|++++++|+...........+... .. .++|+++|+||+|+.+.... + ......++
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------------------~---~~~~~~~~ 139 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------------M---SEVNGHAL 139 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------------E---EEETTEEE
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------------------H---HHhCCCcE
Confidence 9999999999876655555544333 22 37899999999998543210 1 11334578
Q ss_pred eeeeecccCCcchHHHHHHhh
Q psy11896 151 IGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++||++|.|+++|+++|.+.
T Consensus 140 ~~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 140 IRLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp EECCTTTCTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999998754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.46 E-value=2.1e-13 Score=135.99 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=80.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|.... ... ...|.........++...+.+||+||+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 68 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ--SVT----------------------TIPTVGFNVETVTYKNVKFNVWDVGGQDK 68 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC--CEE----------------------EEEETTEEEEEEEETTEEEEEEEESCCGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCC----------------------ccceeeeeEEEeeccceeeEEecCCCcch
Confidence 569999999999999999996321 100 11122233344567888999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~~ 334 (1043)
+.......++.+|++++|+|+..--..... ..|.... ....|++++.||+|+..+
T Consensus 69 ~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~ 128 (173)
T d1e0sa_ 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128 (173)
T ss_dssp GHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred hhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence 999999999999999999999864332222 2233222 246899999999998753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.46 E-value=8.4e-14 Score=139.01 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=110.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++||||...+...+.++. ...|..............+.+|||||+..+...+..+++.+|++++|+
T Consensus 12 ~~kIvlv-G~~~vGKTSli~rl~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~ 87 (173)
T d1e0sa_ 12 EMRILML-GLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 87 (173)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTTCCCCEE---EEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCC---ccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEE
Confidence 3688888 999999999988777666543 345666667777788889999999999999999999999999999999
Q ss_pred eCCCCCchhHH-HHHHH-HH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQ-MK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~-l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.-..... ..+.. +. ...+|+++++||+|+.+.... .++...++ +..... ....++++||+
T Consensus 88 D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~~-~~~~~~e~SA~ 156 (173)
T d1e0sa_ 88 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLG-------LTRIRD-RNWYVQPSCAT 156 (173)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGGCCS-SCEEEEECBTT
T ss_pred ecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH---HHHHHHHH-------HHHHHh-CCCEEEEeeCC
Confidence 99853332222 12222 22 236899999999999764322 12222221 111111 12457899999
Q ss_pred ccCCcchHHHHHHhh
Q psy11896 157 IDSGKTTLTERILFY 171 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~ 171 (1043)
+|+|+++++++|...
T Consensus 157 tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 157 SGDGLYEGLTWLTSN 171 (173)
T ss_dssp TTBTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHh
Confidence 999999999998754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=1.2e-13 Score=135.81 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=113.7
Q ss_pred cceeeeeecccccccCCccccCC-ChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD-SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d-~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~ 73 (1043)
|+.++ |.+++||+|...+.... .......+|+|+......+...+..+.+|||||+.. ....+...+..
T Consensus 2 kI~li-G~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 2 RMVIV-GKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEE-CCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 67777 99999999997665432 234567889999999999999999999999999632 34567778899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++...+...+...+ ...++++++||+|+.+.... +.+...+. ...+++++
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~---~~~~~~~~--------------~~~~~~~v 141 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE---EEIKNKLG--------------TDRHMVKI 141 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH---HHHHHHHT--------------CSTTEEEE
T ss_pred CCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhh---HHHHHHhC--------------CCCcEEEE
Confidence 9999999999998888877776654 45789999999999764332 22333221 12367899
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|+++|++.|..
T Consensus 142 SA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 142 SALKGEGLEKLEESIYR 158 (160)
T ss_dssp EGGGTCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999998753
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.6e-14 Score=158.10 Aligned_cols=110 Identities=39% Similarity=0.493 Sum_probs=85.4
Q ss_pred eeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEe----------------cCeeEE
Q psy11896 6 KIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLW----------------KDHNIN 53 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~----------------~~~~i~ 53 (1043)
-|+ |--+.||||.. ...++|+.++|+++|+|++.....+.+ +++.++
T Consensus 21 ~ii-Ghvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~in 99 (341)
T d1n0ua2 21 SVI-AHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLIN 99 (341)
T ss_dssp EEE-CCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEE
T ss_pred EEE-eCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEEE
Confidence 344 77788888652 234679999999999999998887755 356799
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
|+|||||.+|..++..+++.+|++|+|||+.+|+..+++.+++++...++|+++++||+|+..
T Consensus 100 liDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 162 (341)
T ss_dssp EECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECccccc
Confidence 999999999999999999999999999999999999999999999999999999999999743
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.45 E-value=8.5e-14 Score=140.20 Aligned_cols=113 Identities=21% Similarity=0.114 Sum_probs=78.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|..... . ....|.........+++..+.+|||||+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~--~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEV--V----------------------TTKPTIGFNVETLSYKNLKLNVWDLGGQ 71 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--E----------------------EECSSTTCCEEEEEETTEEEEEEEEC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--C----------------------ccccccceEEEEEeeCCEEEEEEecccc
Confidence 346799999999999999999852210 0 0111222334456778899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~~ 334 (1043)
..|.......++.+|++++|+|+.+....... ..|.... ..+.|+++|.||+|+..+
T Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~ 133 (182)
T d1moza_ 72 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133 (182)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred cccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence 99988888888999999999999876544432 3333322 235799999999998753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=4.5e-14 Score=141.06 Aligned_cols=154 Identities=15% Similarity=0.022 Sum_probs=87.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...+...+.++.+..+.++.+.....+..++. .+.+|||||++.+...+..+++.+|++|+
T Consensus 6 ~~Ki~vv-G~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 6 LFKLLLI-GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEE-CCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 4888988 99999999999988888888888887777777777777664 68889999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+. ..+.|+++|.||.|+..... ........... . .+++.+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~-------------~---~~~~e~ 148 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-------------G---IKFMET 148 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-------------T---CEEEEC
T ss_pred EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhc-------------C---CEEEEE
Confidence 99998754333322 222332 34678999999999864321 11111111111 1 355789
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.++..+
T Consensus 149 Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 149 SAKANINVENAFFTLARDI 167 (173)
T ss_dssp CC---CCHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.7e-14 Score=141.94 Aligned_cols=154 Identities=17% Similarity=0.086 Sum_probs=113.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...++..+.+..+..++++.......+..++. .+.+|||||+++|...+...++.+|++|+
T Consensus 4 ~~Ki~vv-G~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 4 LFKVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 5899999 99999999999999999999999998888887777777764 78999999999999989999999999999
Q ss_pred EEeCCCCCchh-HHHHHHHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQ-TLTVNRQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~-~~~~~~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++.-+.. ....+..+.. .++|+++|.||+|+.+. ............ ...+++.+
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e~ 146 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK----------------NNLSFIET 146 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH----------------TTCEEEEC
T ss_pred EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcc----------------cCceEEEE
Confidence 99998643222 1222333322 35799999999998642 221111111111 11356889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 147 Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 147 SALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHH
Confidence 9999999999998877543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.7e-14 Score=140.99 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...+++.+.+..+..|..+.......+..++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 5 ~~KI~lv-G~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 5 LFKFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 4788888 9999999999998888888877777666655555554443 469999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++.-...... .+..+. ..++|+++|+||+|+.... .......+... .. .+++.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------------~~---~~~~e~ 147 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-------------NE---LMFLET 147 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------TT---CEEEEC
T ss_pred EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHh-------------CC---CEEEEe
Confidence 99998643322221 222222 2468999999999985321 11112222221 11 356889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 148 Sak~~~gi~e~f~~l~~~ 165 (174)
T d2bmea1 148 SALTGENVEEAFVQCARK 165 (174)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHH
Confidence 999999999999887654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.3e-13 Score=133.98 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
|.+|+++|..|+|||||++++....- .. .....+.+. .....+......+.+|||||+.
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~~--~~------------------~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e 59 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVED--GP------------------EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQD 59 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC-----------------------------CEEE-EEEEEETTEEEEEEEEECC---
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCcc--CC------------------cCCeeeeee-cceeeccccccceeeeeccccc
Confidence 46899999999999999999963211 00 000111111 1111222234688899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++|+|+|..+.........| .... ...+|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 118 (168)
T d2gjsa1 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118 (168)
T ss_dssp ----CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG
T ss_pred ccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchh
Confidence 9988888899999999999999875444433333 2222 2457999999999975
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7.9e-14 Score=138.81 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=114.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...+.+.+.++.+..|..+.......+...+ ..+.+|||||+.++...+..+++.+|++++
T Consensus 6 ~~Ki~vv-G~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 6 QFKLVLL-GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 4899999 9999999999999888888888888777766666666554 469999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+... ...+..+.. .+.|+++|.||+|+.... ..+....+.+. .. .+++.+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~-------------~~---~~~~e~ 148 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-------------NS---LLFMET 148 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------TT---CEEEEC
T ss_pred EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHh-------------cC---CEEEEe
Confidence 999886433332 223333322 367899999999985421 11112222221 11 256789
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 149 SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 149 SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987644
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.43 E-value=7.9e-14 Score=140.43 Aligned_cols=156 Identities=16% Similarity=0.076 Sum_probs=108.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++||||...+...+.++ ....|...........+..+.+|||||+..+...+..+++.+|++++|+
T Consensus 17 ~~KI~lv-G~~~vGKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (182)
T d1moza_ 17 ELRILIL-GLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 92 (182)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCC---ccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEe
Confidence 4788888 99999999997766555443 2344667777788888999999999999999888889999999999999
Q ss_pred eCCCCCchhHH-HHHHH-HH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQ-MK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~-l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+.. +. ..+.|+++|+||+|+.+.... +++.+.++ +.... ....+++++||+
T Consensus 93 d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~e~SA~ 161 (182)
T d1moza_ 93 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELN-------LVELK-DRSWSIVASSAI 161 (182)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTT-------TTTCC-SSCEEEEEEBGG
T ss_pred eecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH---HHHHHHHH-------HHHHh-hCCCEEEEEECC
Confidence 99876544332 22222 22 236799999999999764322 22333221 11101 112467899999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|+|++++++.+.+.+
T Consensus 162 ~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 162 KGEGITEGLDWLIDVI 177 (182)
T ss_dssp GTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987664
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=1.1e-13 Score=141.50 Aligned_cols=151 Identities=20% Similarity=0.193 Sum_probs=93.4
Q ss_pred hhhcCEEEEEEeCCCC-CchhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 71 LRVLDGAILVLCAVGG-VQSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~-~~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
..+.|.+++|+.+..+ +...- ..++-.+...++|.++|+||+||.+.+....+..+.+.+. ...
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~--------------~~~ 73 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS--------------GLY 73 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--------------TTS
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccc--------------cce
Confidence 4578999999988653 33222 3344456678999999999999975322111222222111 114
Q ss_pred eeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCcee
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE 228 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~ 228 (1043)
+++.+|++++.|+++|.+.+.. +..+++|++|+|||||+|+|+..... +
T Consensus 74 ~v~~vSa~~~~g~~~L~~~l~~-----------------------------kt~~~~G~SGVGKSTLiN~L~~~~~~--~ 122 (225)
T d1u0la2 74 PIVKTSAKTGMGIEELKEYLKG-----------------------------KISTMAGLSGVGKSSLLNAINPGLKL--R 122 (225)
T ss_dssp CEEECCTTTCTTHHHHHHHHSS-----------------------------SEEEEECSTTSSHHHHHHHHSTTCCC--C
T ss_pred eEEEeccccchhHhhHHHHhcC-----------------------------CeEEEECCCCCCHHHHHHhhcchhhh--h
Confidence 6789999999999998887631 34789999999999999999733211 1
Q ss_pred eeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 229 MHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 229 ~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
.+.+.. ...+.+.+|.......+..+ -.+|||||..+|
T Consensus 123 T~~vs~-----------~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 123 VSEVSE-----------KLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp ------------------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred ccCccc-----------ccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 111111 12345667776666555433 468999998665
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=9.7e-14 Score=137.71 Aligned_cols=155 Identities=17% Similarity=0.011 Sum_probs=112.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...+++.+.+..+..+.+...........++. .+.+|||+|+.++...+..+++.+|++|+
T Consensus 4 ~~Ki~lv-G~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 4 ELKVCLL-GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 4799999 99999999999998888888777776665555555555443 57899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++.-+......+ ... ...+.|+++|+||+|+.+. ...+....+.+.+ . .+++.+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~e~ 146 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI-------------H---AIFVET 146 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------T---CEEEEC
T ss_pred EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHc-------------C---CEEEEE
Confidence 9998864333333222 122 2246789999999998542 1111222222221 1 245789
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++++..++..++
T Consensus 147 SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 147 SAKNAININELFIEISRRIP 166 (167)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred ecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999886654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=5.1e-14 Score=143.44 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=112.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||+..+++.+.++.+..|.++.......+..+ ...+.+|||||+++|...+..+++.+|++|+
T Consensus 6 ~~Kivvv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 6 LFKLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4899988 999999999998888888888877776666555555554 4479999999999998888889999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++........ .+..+. ..++|+++|.||+|+.+... .+........ . ..+++.+
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-------------~---~~~~~e~ 148 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-------------N---KMPFLET 148 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------------T---TCCEEEC
T ss_pred EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhc-------------c---CcceEEE
Confidence 99998643333322 222232 34678999999999865321 1111111111 1 1245789
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 149 SAk~g~gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 149 SALDSTNVEDAFLTMARQIK 168 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecCcCccHHHHHHHHHHHHH
Confidence 99999999999998876544
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.5e-13 Score=133.61 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=79.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
|+.+..+|+++|..|+|||||+++|+... ... + ...+........+.+++ +.+.+|
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~--f~~--------------~------~~~t~~~~~~~~~~~~~~~~~l~~~ 59 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSY--FVS--------------D------YDPTIEDSYTKICSVDGIPARLDIL 59 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSS--CCS--------------S------CCTTCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCC--CCc--------------c------cccccccceeeEeccCCeeeeeecc
Confidence 34556789999999999999999997321 100 0 00111111112233343 578889
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
||+|+.+|.......++.+|++++|+|..+..+.....-| ... ...+.|+++|.||+|+.
T Consensus 60 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~ 124 (173)
T d2fn4a1 60 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124 (173)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred ccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechh
Confidence 9999999999889999999999999999975444433333 222 23577999999999975
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=5e-14 Score=139.68 Aligned_cols=154 Identities=16% Similarity=0.018 Sum_probs=110.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |++++||||...+++.+.++.+..|+++.+.....+..++. .+.+|||||+..+...+..+++.+|++++
T Consensus 2 ~~Ki~vv-G~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T d1g16a_ 2 IMKILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 80 (166)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 5799988 99999999999999999999988898888888777777664 57789999999988888899999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|.++.-+......+ ... .....|++++.||.|+.... ..+....+.... ..+++.+|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 144 (166)
T d1g16a_ 81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL----------------GIPFIESS 144 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH----------------TCCEEECB
T ss_pred EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhc----------------CCeEEEEC
Confidence 9999874333332222 222 22356789999999986532 222223332221 13568899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 145 a~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 145 AKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.1e-13 Score=130.83 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=78.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++|+... . +.+....++..........+ ...+.+|||||+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 60 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS--F-------------------DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--C-------------------CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--C-------------------CCccccceeeeccceeeccCCCceeeeecccCCcc
Confidence 69999999999999999997321 1 01112223333333333333 4678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+....+.... |.... ..+.|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118 (164)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh
Confidence 999988899999999999999997654444333 33322 2568899999999975
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.8e-13 Score=130.85 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=77.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|.+++|||||+++++...-... .....+.++.............+.+|||||+.
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 64 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-------------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc-------------------ccccccccceeEEEEECCEEEEEEEeccCCch
Confidence 56899999999999999999973211100 00111222222222232334589999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+....+... .+.... ....|++++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 122 (166)
T d1z0fa1 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 122 (166)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred hHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence 99998899999999999999998754333222 233332 3456889999999974
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.9e-14 Score=139.68 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=109.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...++..+.+..+..+. +.+.....+..++. .+.+|||+|+.++...+..+++.+|++|+
T Consensus 6 ~~Kv~lv-G~~~vGKTsLi~r~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 6 THKLVVV-GGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHSSCCSSCCTT-CCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred eEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccc-cccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence 4799999 99999999998888877777665554 44444556666654 68889999999999899999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH----hcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~----~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+...... +..+. ..+.|+++|+||+|+... ........+.+. .. .+.+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~e 147 (173)
T d2fn4a1 84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-------------HH---VAYFE 147 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------------TT---CEEEE
T ss_pred ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh-------------cC---CEEEE
Confidence 999986543333222 22221 246799999999998642 111112222222 11 24577
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.++..+
T Consensus 148 ~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 148 ASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=6.8e-14 Score=138.42 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=111.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
..|+.++ |++++||+|...++..+.++.+..|.+..+.....+..++ ..+.+|||||+.++......+++.+|++++
T Consensus 2 ~iKv~li-G~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (164)
T d1z2aa1 2 AIKMVVV-GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 80 (164)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence 3588888 9999999999988888888888778766666666666555 468999999999988888899999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH--hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK--RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~--~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|.++..+..... .+..+. ..++|+++|+||+|+.+.. ..+....+.+.+ . .+++.+|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~e~S 144 (164)
T d1z2aa1 81 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-------------K---LRFYRTS 144 (164)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-------------T---CEEEECB
T ss_pred EEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHc-------------C---CEEEEec
Confidence 99998644333322 222232 2478999999999986421 111122232221 1 2568899
Q ss_pred ecccCCcchHHHHHHh
Q psy11896 155 AHIDSGKTTLTERILF 170 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~ 170 (1043)
|++|.|++++++.++.
T Consensus 145 ak~g~~v~e~f~~l~~ 160 (164)
T d1z2aa1 145 VKEDLNVSEVFKYLAE 160 (164)
T ss_dssp TTTTBSSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 9999999999988864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.9e-13 Score=136.14 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=105.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||||...+++.+.+..+..|. ..+.....+..++ +.+.+|||+|+.++......+++.+|++++
T Consensus 5 ~~Ki~lv-G~~~vGKTsLi~r~~~~~f~~~~~~t-~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 5 KYRLVVV-GGGGVGKSALTIQFIQSYFVTDYDPT-IEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHSCCCSSCCTT-CCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCcccCcc-cccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 4899999 99999999999888888877666553 3344445555555 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-H----HHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-N----RQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~----~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+...... + +.......|+++|+||+|+.... ..+..+.+.+.+ . .+.+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~e 146 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQL-------------K---VTYME 146 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHT-------------T---CEEEE
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHc-------------C---CEEEE
Confidence 999886433222221 1 22223468999999999986431 111222222221 1 24577
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++++..+...+
T Consensus 147 ~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 147 ASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.41 E-value=1.4e-13 Score=136.61 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=104.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||||...+++.+.+..+..|.+..+ ....+..++ ..+.+|||||+.++......+++.+|++++
T Consensus 4 ~~Kivlv-G~~~vGKTsli~~~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il 81 (168)
T d1u8za_ 4 LHKVIMV-GSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHHhCCCCcccCCccccc-cccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence 5899999 999999999988888888777766633322 223344454 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+......| ..+. ..++|+++|+||+|+.... ..+..+.+.+.+ . .+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~e 145 (168)
T d1u8za_ 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-------------N---VNYVE 145 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-------------T---CEEEE
T ss_pred EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHc-------------C---CeEEE
Confidence 9999864443333222 2222 2478999999999985421 111122222221 1 24578
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 146 ~Sak~g~gv~e~f~~l~~ 163 (168)
T d1u8za_ 146 TSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHH
Confidence 999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.3e-13 Score=133.49 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=79.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
.+.+|+++|..|+|||||+++|+...- +.+....++.......+... ...+.+||||
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~ 62 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLF---------------------PPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC---------------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCC---------------------CCcccccccceEEEEEEEECCEEEEEEEEECC
Confidence 357899999999999999999973211 01112233333333334443 4678899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|..+....... ..+..+.+ ...|+++|.||+|..
T Consensus 63 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~ 123 (171)
T d2ew1a1 63 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 123 (171)
T ss_dssp CSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccc
Confidence 9999988888888999999999999864433322 33333332 357899999999965
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.9e-13 Score=135.10 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=78.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...-.. . .....+.+..............+.+|||||+.
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~--------~-----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKD--------D-----------SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT--------T-----------CCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc--------c-----------cccccccceeeEEEEecCcceeEEEEECCCch
Confidence 4679999999999999999997321000 0 00111222222222233345679999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|............| ..+. ..++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 123 (174)
T d2bmea1 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 123 (174)
T ss_dssp GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEeccccc
Confidence 9999999999999999999999875444433332 2222 2468999999999964
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.2e-14 Score=139.16 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=107.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...+.+.+.+.++..|....+.....+..++ ..+.+|||+|+.++...+..+++.+|++|+
T Consensus 3 ~fKivlv-G~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 3 SFKVVLL-GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred eEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 4899999 9999999999999888999888888777776666666655 579999999999999889899999999999
Q ss_pred EEeCCCCCchhHHHH-HHHH---HhcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQM---KRYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l---~~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+...... +..+ .....|++++.||+|+.+. ..++ .+.+.+. .. .+.+.
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e-~~~~a~~-------------~~---~~~~e 144 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE-AESYAES-------------VG---AKHYH 144 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHH-HHHHHHH-------------TT---CEEEE
T ss_pred EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHH-HHHHHHH-------------cC---CeEEE
Confidence 999986544333222 2222 2346688999999998642 1222 2222222 11 24578
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.++..
T Consensus 145 ~Sak~~~~v~e~F~~l~~~ 163 (167)
T d1z08a1 145 TSAKQNKGIEELFLDLCKR 163 (167)
T ss_dssp EBTTTTBSHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHH
Confidence 9999999999999988754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=4.9e-13 Score=134.21 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=107.6
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCc-------chHHHHHHHhhhcCE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHV-------DFTVEVERALRVLDG 76 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~-------~~~~~~~~~~~~aD~ 76 (1043)
+-++ |..++||+|...+.+.........++.|+......... .+.++.+|||||+. .+...+...+..+|+
T Consensus 4 Vaiv-G~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 4 VGLV-GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp EEEE-CCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEE-CCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4566 99999999997665555555566677777777655554 46789999999964 344567788999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHH-----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQM-----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l-----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+++++|+.............++ ...++|+++|+||+|+...+ ..+.+.+.+. ....+++
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~-------------~~~~~~~ 146 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE---AVKALADALA-------------REGLAVL 146 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH---HHHHHHHHHH-------------TTTSCEE
T ss_pred hhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH---HHHHHHHHHH-------------hcCCeEE
Confidence 9999998754433333222222 23468999999999997532 2233333332 1124678
Q ss_pred eeeecccCCcchHHHHHHhhccc
Q psy11896 152 GISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++||++|.|+++|++.+...+..
T Consensus 147 ~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 147 PVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999877654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=2.4e-13 Score=135.60 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=58.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
.+.+|+++|++|+|||||+++|+... . .+. .....+.+.. ...+..+ ...+++||||
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~--~---------------~~~--~~~t~~~~~~--~~~~~~~~~~~~l~i~D~~ 63 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDA--F---------------NST--FISTIGIDFK--IRTIELDGKRIKLQIWDTA 63 (173)
T ss_dssp EEEEEEEECCCCC---------------------------------C--HHHHHCEEEE--EEEEEETTEEEEEEEEEC-
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCC--C---------------CCc--cCccccceEE--EEEEEECCEEEEEEEEECC
Confidence 46789999999999999999996321 0 000 1122222332 3334444 4678889999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
|+..|.......++.+|++|+|+|+.+...-.....| ... ...+.|+++|.||.|...
T Consensus 64 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~ 125 (173)
T d2fu5c1 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 125 (173)
T ss_dssp --------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence 9999988888889999999999999875433322222 222 235679999999999763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-13 Score=137.69 Aligned_cols=158 Identities=16% Similarity=0.072 Sum_probs=115.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||||...+...+.+..+..+.++.......+..++ +++.||||||+.++...+..+++.+|++++
T Consensus 7 ~iKi~vv-G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 7 TLKILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 3688888 9999999999998888999888888888877766666654 479999999999998888899999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++...... ...+..+.. ...|++++.||.|....... .....+.+. .. .+++.+
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~-------------~~---~~~~e~ 149 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-------------HS---MLFIEA 149 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-------------TT---CEEEEC
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHH-------------CC---CEEEEE
Confidence 999886433222 222333322 34678999999998654321 111222221 11 256889
Q ss_pred eecccCCcchHHHHHHhhccccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRIS 176 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~ 176 (1043)
||++|.|++++++.+...+-..+
T Consensus 150 Sa~tg~gv~e~f~~l~~~l~~~p 172 (177)
T d1x3sa1 150 SAKTCDGVQCAFEELVEKIIQTP 172 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred eCCCCCCHHHHHHHHHHHHccCc
Confidence 99999999999998876554433
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=8.7e-14 Score=139.10 Aligned_cols=154 Identities=16% Similarity=0.048 Sum_probs=98.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |+.++||||...+.+.+.+..+..|..+...........+ ..+.+|||||+.++...+..+++.+|+++
T Consensus 2 ~~Ki~~v-G~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 80 (175)
T d1ky3a_ 2 ILKVIIL-GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 80 (175)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred eEEEEEE-CCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence 4788988 9999999999988888888777777655555444444333 36899999999999999999999999999
Q ss_pred EEEeCCCCCchhHHHH-HHHHHh-------cCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 79 LVLCAVGGVQSQTLTV-NRQMKR-------YDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~-~~~l~~-------~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|+|+++..+...... ...+.. .++|+++|+||+|+.+.. .....+++.+.+ ..
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~---------------~~ 145 (175)
T d1ky3a_ 81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL---------------GD 145 (175)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT---------------TS
T ss_pred EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHc---------------CC
Confidence 9999986443322222 222221 367999999999986421 122222332221 22
Q ss_pred eeeeeeeecccCCcchHHHHHHhh
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
.+++.+||++|.|++++++.+...
T Consensus 146 ~~~~e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 146 IPLFLTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHH
Confidence 356889999999999999988653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2e-13 Score=135.30 Aligned_cols=151 Identities=19% Similarity=0.084 Sum_probs=107.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...+.+.+.+..+..|.+. +.....+..++ ..+.+||++|+..+......+++.+|++++
T Consensus 3 ~~Ki~lv-G~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 3 EYKVVVL-GSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 4899999 9999999999988888888777666543 33333444444 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.....-| ..+. ..++|+++|+||+|+.... .......+.+.. . .+++.
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~e 144 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW-------------G---CPFME 144 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-------------T---SCEEE
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc-------------C---CeEEE
Confidence 9999864433332222 2221 2468999999999986421 111112222211 1 24578
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.++.
T Consensus 145 ~Sak~g~~i~e~f~~i~~ 162 (167)
T d1kaoa_ 145 TSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp ECTTCHHHHHHHHHHHHH
T ss_pred ECCCCCcCHHHHHHHHHH
Confidence 999999999999998865
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.6e-13 Score=134.43 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||...+.+.+.++.+..+.+........ ... ...+.+||++|+..+......+++.+|++++
T Consensus 3 e~Ki~vi-G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii 80 (166)
T d1ctqa_ 3 EYKLVVV-GAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEE-EETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHhCCCCCccCCccceeeccce-eeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence 5899999 99999999999888888888777776665544333 333 3469999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH----hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~----~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+......| ..+. ..++|+++|.||+|+..... .+..+.+.+.. . .+.+.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~e~ 144 (166)
T d1ctqa_ 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSY-------------G---IPYIET 144 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHH-------------T---CCEEEC
T ss_pred eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHh-------------C---CeEEEE
Confidence 9999864333332222 2222 24689999999999865322 22222232221 1 245789
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|+++++..++..
T Consensus 145 Sak~g~gi~e~f~~i~~~ 162 (166)
T d1ctqa_ 145 SAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 999999999999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.4e-13 Score=137.44 Aligned_cols=153 Identities=13% Similarity=-0.013 Sum_probs=110.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.++ |+.++||||...+...+.++.+..++.+...........+ ..+.+||++|+..+...+..+++.+|++|+
T Consensus 3 ~~Kivvv-G~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (173)
T d2a5ja1 3 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 81 (173)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence 4899998 9999999999999888998888888888877777666665 479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+... ...+..+.. .++|+++|.||+|+... ...+....+.+.. . .+++.+
T Consensus 82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~-------------~---~~~~e~ 145 (173)
T d2a5ja1 82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-------------G---LIFMET 145 (173)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---CEEEEE
T ss_pred EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHc-------------C---CEEEEe
Confidence 999886433222 222333322 46899999999997532 1111122222211 1 255789
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|+++++..+...
T Consensus 146 Sa~tg~~V~e~f~~i~~~ 163 (173)
T d2a5ja1 146 SAKTACNVEEAFINTAKE 163 (173)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 999999999999888764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=2.8e-13 Score=134.59 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=108.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||+..+.+.+.+..+..|...... ...+..++ ..+.+|||+|+.++...+..+++.+|++++
T Consensus 4 t~Ki~lv-G~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 4 TYKLVVV-GDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 81 (169)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred cEEEEEE-CCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence 4899999 9999999999988888888877777554322 23344444 468899999999998888999999999999
Q ss_pred EEeCCCCCchhHHH-HHH----HHHhcCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLT-VNR----QMKRYDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~----~l~~~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++..+..... .+. .....++|++++.||+|+.... .++. .++.+.. . .+.+
T Consensus 82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~-~~~~~~~-------------~---~~~~ 144 (169)
T d1x1ra1 82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG-KEMATKY-------------N---IPYI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHH-HHHHHHH-------------T---CCEE
T ss_pred ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhH-HHHHHHc-------------C---CEEE
Confidence 99998644332222 222 2223478999999999986542 2222 2232222 1 2457
Q ss_pred eeeecccC-CcchHHHHHHhh
Q psy11896 152 GISAHIDS-GKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g~-Gi~~L~~~l~~~ 171 (1043)
.+||+++. ||++++..+...
T Consensus 145 e~Sak~~~~nV~~~F~~l~~~ 165 (169)
T d1x1ra1 145 ETSAKDPPLNVDKTFHDLVRV 165 (169)
T ss_dssp EEBCSSSCBSHHHHHHHHHHH
T ss_pred EEcCCCCCcCHHHHHHHHHHH
Confidence 79999885 999999988754
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-13 Score=137.00 Aligned_cols=153 Identities=16% Similarity=0.057 Sum_probs=108.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||+..++..+.++++..|.+.... ...+..+ ...+.+||++|+..+...+..+++.+|++|+
T Consensus 3 ~~Kivvv-G~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 3 EYKLVVL-GSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 4899999 9999999999999988888877766554333 2333333 3469999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+..... .+..+. ..++|+++|.||+|+.... ..+....+.+.+ ...+.+.
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~e 145 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW---------------CNCAFLE 145 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------------TSCEEEE
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHh---------------CCCEEEE
Confidence 99998654433322 222222 2367999999999986431 111112222211 1135577
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.++..
T Consensus 146 ~Sak~g~gv~e~F~~l~~~ 164 (167)
T d1c1ya_ 146 SSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHH
Confidence 9999999999999988753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.7e-13 Score=133.15 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=106.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||||...+++.+.+..+..|.+. +........++ ..+.+|||+|+..+......+++.+|++++
T Consensus 2 ~~Ki~vi-G~~~vGKTsLi~r~~~~~f~~~~~~T~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 79 (171)
T d2erxa1 2 DYRVAVF-GAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 79 (171)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCCCccCccee-eccccceeeccccceeccccccccccccccccccccceeEEEE
Confidence 4899999 9999999999888888887766665332 22223334444 368889999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH-----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK-----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~-----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++.-+... ...+..+. ..++|+++|+||+|+.... ..+..+++.+.+ . .+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~-------------~---~~~~ 143 (171)
T d2erxa1 80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-------------K---CAFM 143 (171)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-------------T---CEEE
T ss_pred EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc-------------C---CeEE
Confidence 999985332222 12222221 2467999999999985321 111222333222 1 2457
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+||++|.|++++++.+....
T Consensus 144 e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 144 ETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 799999999999999988643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.5e-13 Score=137.75 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=107.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||||...++..+.++++..|.+. +........++ ..+.+|||||+..+...+..+++.+|++|+
T Consensus 2 r~Kivvv-G~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 79 (177)
T d1kmqa_ 2 RKKLVIV-GDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM 79 (177)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEE-CCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhh
Confidence 5799888 9999999999988888888777666433 22223334433 469999999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++.-+.... ..+ ..+. ..++|+++|.||+|+...... .+.....-...+.. ..+. ......+++.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~v~~~e~~~~a--~~~~~~~~~E 155 (177)
T d1kmqa_ 80 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT--RRELAKMKQEPVKPEEGRDMA--NRIGAFGYME 155 (177)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHH--HHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred hcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhH--HHHHHHhhcccccHHHHHHHH--HHcCCcEEEE
Confidence 9999864332221 112 2222 236899999999999753221 11111100000000 0000 0112235678
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 156 ~SAkt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 156 CSAKTKDGVREVFEMATRA 174 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHH
Confidence 9999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=4.4e-13 Score=133.83 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=66.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeE-EEEecCeeEEEEcCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT-YTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDtPG~ 277 (1043)
+.+|+++|.+|+|||||+++|+...-.. ++ ....+.+...... ........+.++||||+
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~----------------~~---~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 62 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QY---KATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC------CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCC----------------cc---CcccccceeeeeeeecCcccccceeeccCCc
Confidence 6789999999999999999997321100 00 0011111111110 01122356889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH-------hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~-------~~~~p~ivviNKiD~~ 332 (1043)
.++.......++.+|++++|+|+.+...-+....|. ... ..++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~ 125 (175)
T d1ky3a_ 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 125 (175)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence 998888888899999999999998755433333332 222 1367999999999976
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=6.8e-13 Score=131.44 Aligned_cols=114 Identities=17% Similarity=0.061 Sum_probs=76.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|....-.. . .....+.+..............+.+|||+|+.+
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~--------~-----------~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 65 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDP--------N-----------INPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCT--------T-----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCc--------c-----------cccccccccccccccccccccceeeeecCCchh
Confidence 469999999999999999997321100 0 001112222222222222335678999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HH---HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~---~~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++|+|+|............|. .. .....|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 122 (167)
T d1z0ja1 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122 (167)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhc
Confidence 9888888999999999999998644444333332 22 23567899999999975
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-13 Score=139.49 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------CeeEEEEeCCCCcchHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------DHNINIIDTPGHVDFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~~~i~liDTPG~~~~~~~~~~ 69 (1043)
+||+.++ |+.++||||...+.+.+.+..+..+..+.+.....+.++ ..++.+|||||++++...+..
T Consensus 5 ~~Ki~iv-G~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 5 LIKLLAL-GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEE-SCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEE-CCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 4788888 999999999988888888777777766665544444432 246999999999999999999
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHH-HH----hcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccC
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK----RYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~-l~----~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
+++.+|++|+|+|+++..+......|.. +. ....|+++|+||+|+... ..++. ..+.+.+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~-~~~~~~~----------- 151 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA-RELADKY----------- 151 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH-HHHHHHT-----------
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHH-HHHHHHc-----------
Confidence 9999999999999986433333322221 11 124578999999998542 11111 2222221
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
. .+++.+||++|.|++++++.+....
T Consensus 152 --~---~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 152 --G---IPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp --T---CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --C---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 2458899999999999999888654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.38 E-value=1.6e-13 Score=144.63 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=55.5
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHh-----cCeEEEEEeCCCCcchHHHHHHHHH-----HhcCCCeEEEEeccCCCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRV-----LDGAILVLCAVGGVQSQTLTVNRQM-----KRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~-----~D~~ilVvda~~g~~~~t~~~~~~~-----~~~~~p~ivviNKiD~~~~~ 335 (1043)
...+.++|||||.++...+...... .+.+++++|+..+..+++....... .+...|.++|+||+|+..++
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 173 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHH
Confidence 4579999999999987776665543 3479999999999999987665433 35688999999999998654
Q ss_pred H
Q psy11896 336 P 336 (1043)
Q Consensus 336 ~ 336 (1043)
.
T Consensus 174 ~ 174 (244)
T d1yrba1 174 E 174 (244)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.9e-13 Score=136.04 Aligned_cols=153 Identities=12% Similarity=0.004 Sum_probs=100.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |+.++||||+..+...+.+..+ ..+.++.+.....+...+. ++.||||||+.++...+..+++.+|+++
T Consensus 6 ~fKi~vv-G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 6 AFKVMLV-GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence 4889999 9999999999888777776543 3444445555555666654 7899999999999998999999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHH-H--hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQM-K--RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l-~--~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+|.++..+..... .+..+ . ....|+++|.||+|+.+... .+....+.+.. . .+++.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~-------------~---~~~~e 148 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-------------G---LPFME 148 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-------------T---CCEEE
T ss_pred EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHc-------------C---CEEEE
Confidence 999988543322222 22222 2 23578999999999875321 11122222221 1 25688
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 149 ~Sak~g~gi~e~f~~l~~~ 167 (170)
T d2g6ba1 149 TSAKTGLNVDLAFTAIAKE 167 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHH
Confidence 9999999999999988743
|
| >d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor 2 (eEF-2), domain IV species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=2.6e-13 Score=133.14 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=77.1
Q ss_pred CCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChh--hHHHHHHHHHHHHHHHh
Q psy11896 712 ANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNE--ISFILAAHGAMKQAYEE 789 (1043)
Q Consensus 712 ~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~--~~~~~a~~~a~~~a~~~ 789 (1043)
..+++.|+|++.++.+|++|+++|++||+||+.+|||||+||+||+|+|.|++.|..+++. +++++|+|+||++|++.
T Consensus 80 ~~~~ni~vd~t~g~~~~~~~~~si~~Gf~~a~~~GpL~~epv~gv~~~l~d~~~h~~~~~~~~~qiipa~r~a~~~a~l~ 159 (165)
T d1n0ua3 80 GNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLL 159 (165)
T ss_dssp TTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCcccccchHHHHHHHHHHHHHHHhhCccCCCcEEeEEEEEEEccccccccCCCcchhHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999999999999999999987764 56677999999999999
Q ss_pred ccccc
Q psy11896 790 GVWQI 794 (1043)
Q Consensus 790 ~~~~l 794 (1043)
|.|+|
T Consensus 160 a~P~l 164 (165)
T d1n0ua3 160 ADPKI 164 (165)
T ss_dssp SCEEE
T ss_pred CCCCC
Confidence 99886
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.2e-12 Score=130.79 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=78.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
.+.+|+++|.+|+|||||+++++...-. .+..++++.......+..++ ..+.++|||
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 61 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFN---------------------LESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC---------------------C---CCCSCEEEEEEEEETTEEEEEEEEECS
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCC---------------------CcccccccceeeeEEEEECCEEEEEEecccC
Confidence 4578999999999999999999732110 11122222223333344444 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++|+|+|..+.-.-. ....+..+. ..++|+++|.||+|+.
T Consensus 62 g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~ 122 (175)
T d2f9la1 62 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 122 (175)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc
Confidence 99999888888899999999999998643222 222333333 2457999999999975
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1e-12 Score=130.60 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=71.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|..++|||||+++++........ ....-+.++.............+++|||||+
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 66 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT------------------FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC------------------CCCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCccc------------------ccceeeeeeEEEEEEecCcEEEEEEEECCCc
Confidence 3468999999999999999999732110000 0011123333333323233358899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
.+|.......++.+|++++|+|..+....+....| ... .....|+++|.||+|...
T Consensus 67 e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~ 126 (170)
T d2g6ba1 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126 (170)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence 99988888888999999999999875544433332 222 224568999999999763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=6.8e-13 Score=134.95 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=80.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+.+|+|+|..|+|||||+++|+... ... ......+.+..............+++|||||+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~--~~~-----------------~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~ 65 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDT--YTN-----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC--CCT-----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCC--CCC-----------------CcCCccceeEEEEEEEEeeEEEEEEEEECCCc
Confidence 46789999999999999999997321 100 00112333333333333344578999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH---HhcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
.+|...+..+++.+|++|+|+|+......+... .+... ....+|+++|.||+|+..
T Consensus 66 e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 125 (194)
T d2bcgy1 66 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 125 (194)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc
Confidence 999887788889999999999998644333332 22222 234669999999999863
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=8.2e-13 Score=130.68 Aligned_cols=116 Identities=19% Similarity=0.107 Sum_probs=76.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|.+|+|||||+++|+... ... ......+.+..............+++|||||+.
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~--~~~-----------------~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~ 62 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDK--FNP-----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCC------------------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC--CCC-----------------ccCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 5689999999999999999997321 100 011122223332333333344678889999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
.|......+++.+|++++|+|..+..+.+....|... .....|.+++.||.|...
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~ 121 (166)
T d1g16a_ 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121 (166)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh
Confidence 8888788889999999999999986544443333222 123457888899988753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.9e-13 Score=138.10 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=106.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||||...+++.+.++.+..|.+ .+.....+...+ +++.+|||||+..+...+..+++.+|++++
T Consensus 9 ~~Ki~lv-G~~~vGKTsLi~r~~~~~f~~~~~~Ti-~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il 86 (185)
T d2atxa1 9 MLKCVVV-GDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 86 (185)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHSSCCCSCCCSS-CCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHhhCCCCCcCCCce-eeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence 5799999 999999999998888888877766633 344444455444 468999999999998888899999999999
Q ss_pred EEeCCCCCchhHH-HHHH-HHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNR-QMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~-~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++.-+.+.. ..+. .++ ..++|+++|.||+|+.+.... . ......-.+.+.. ..+.. .......+.
T Consensus 87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~-~-~~~~~~~~r~v~~~~~~~~a~--~~~~~~~~E 162 (185)
T d2atxa1 87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT-L-ARLNDMKEKPICVEQGQKLAK--EIGACCYVE 162 (185)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHH-H-HHHTTTTCCCCCHHHHHHHHH--HHTCSCEEE
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhh-h-hhhhhcccccccHHHHHHHHH--HcCCCEEEE
Confidence 9999864332221 1122 222 246899999999999652211 0 1100000000000 00000 011124467
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 163 ~SAk~~~gv~e~F~~li~ 180 (185)
T d2atxa1 163 CSALTQKGLKTVFDEAII 180 (185)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHH
Confidence 999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=9.6e-13 Score=129.94 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=76.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|+... ... ++ .+.-+.+..............+.+|||||+.+
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~--~~~--------------~~---~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 63 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGI--FTK--------------DY---KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCC--------------CS---SCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc--------------cc---ccccccccceeeeeecCceeeeeeeccCCccc
Confidence 369999999999999999997321 000 00 01112222222222222246789999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH--hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~--~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++++|+|..+...-+...-| ..+. ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~ 119 (164)
T d1z2aa1 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 119 (164)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred hhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcc
Confidence 888888889999999999999875444333323 2322 3578999999999975
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=5.2e-12 Score=126.24 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=76.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.-+|+++|++|+|||||+|+|+.....+. ....+++..........+...+..+|+||..
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISIT--------------------SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC--------------------CCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceee--------------------ccCCCceEEEEEeeeecCCceeEeecCCCce
Confidence 45699999999999999999985421110 0112222233334455567778889999976
Q ss_pred CchHHHHHHh---------HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERAL---------RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l---------~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.......... ..+|.++++.|+.. ...+....+..+.+...|.++|+||+|...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~ 127 (179)
T d1egaa1 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127 (179)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred ecchhhhhhhhhhccccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccc
Confidence 5444322221 34677778888664 556666667777778889999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.4e-13 Score=131.81 Aligned_cols=151 Identities=17% Similarity=0.075 Sum_probs=105.5
Q ss_pred CCccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
+..|+.++ |+.++||||...+++.+.++++..|.+..+.... +..++ +.+.+|||+|...+. ....+++.+|+++
T Consensus 1 ~eiKi~lv-G~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~i 77 (168)
T d2atva1 1 AEVKLAIF-GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFV 77 (168)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEE
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccce
Confidence 35789888 9999999999999998988888777554443322 23344 479999999998874 5567889999999
Q ss_pred EEEeCCCCCchhHHHHHH-H----HHhcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 79 LVLCAVGGVQSQTLTVNR-Q----MKRYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~-~----l~~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|+|.++..+.....-+. . ....+.|+++|.||+|+... ..++. ..+.+.+ . .+.
T Consensus 78 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~-~~~a~~~-------------~---~~~ 140 (168)
T d2atva1 78 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG-EKLATEL-------------A---CAF 140 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHH-HHHHHHH-------------T---SEE
T ss_pred eecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHH-HHHHHHh-------------C---CeE
Confidence 999998654333322221 1 12246899999999998532 22222 2233222 1 245
Q ss_pred eeeeecccCC-cchHHHHHHhh
Q psy11896 151 IGISAHIDSG-KTTLTERILFY 171 (1043)
Q Consensus 151 i~iSa~~g~G-i~~L~~~l~~~ 171 (1043)
+.+||++|.| |++++..++..
T Consensus 141 ~e~Saktg~gnV~e~F~~l~~~ 162 (168)
T d2atva1 141 YECSACTGEGNITEIFYELCRE 162 (168)
T ss_dssp EECCTTTCTTCHHHHHHHHHHH
T ss_pred EEEccccCCcCHHHHHHHHHHH
Confidence 7799999985 99999888753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.3e-12 Score=126.81 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=77.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|+... ... . .....+.+..............+.+|||||+.+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~--f~~------~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 67 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQ--FHE------F-----------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCT------T-----------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc------c-----------cccccccccccceeeccceEEEEEeccCCCchh
Confidence 579999999999999999997321 100 0 111223333322222222346788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH---hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|........... .+.... ..+.|+++|.||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 124 (170)
T d1r2qa_ 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccc
Confidence 9988888999999999999988754333332 333332 2467899999999964
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=130.33 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=106.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||+|+..+.+.+.+..+..+.+........+..++ ..+.+|||+|..+.......++..+|++++
T Consensus 6 ~~KI~vv-G~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 6 LFKVILL-GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 5899988 9999999999988888888887777665555555555554 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH-------hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK-------RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~-------~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
++|.++..+...... ...+. ..+.|+++|.||+|+.+.. .++. ..+.+. ....+
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~-~~~~~~---------------~~~~~ 148 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA-QAWCRD---------------NGDYP 148 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH-HHHHHH---------------TTCCC
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHH-HHHHHH---------------cCCCe
Confidence 999985433222221 11121 1357999999999986432 2211 222211 11134
Q ss_pred eeeeeecccCCcchHHHHHHh
Q psy11896 150 NIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
++.+||++|.|++++++.+..
T Consensus 149 ~~e~Sak~~~gI~e~f~~l~~ 169 (174)
T d1wmsa_ 149 YFETSAKDATNVAAAFEEAVR 169 (174)
T ss_dssp EEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHH
Confidence 578999999999999988764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=1.9e-12 Score=131.64 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=105.6
Q ss_pred cceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCCCc-------------chHHHHH
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPGHV-------------DFTVEVE 68 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-------------~~~~~~~ 68 (1043)
++.++ |.+++||+|...+.+.... .....+++|.+...... ...+.++|++|.. .+...+.
T Consensus 25 ~I~lv-G~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 25 EIALA-GRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp EEEEE-EBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHHhhhh
Confidence 45555 9999999998666554322 44556677766554332 4567789998863 1344555
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.....+|++++|+|++.++..++.++++++...++|+++|+||+|+... +..+..+.+.+.+. ....
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~------------~~~~ 168 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN------------IDPE 168 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT------------CCTT
T ss_pred ccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhc------------ccCC
Confidence 6677789999999999999999999999999999999999999998643 33344444444432 1233
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++|.|+++|++.+...+
T Consensus 169 ~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 169 DELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999988765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1e-13 Score=137.56 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=106.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||||...+++.+.+..+..|.+..+. ...+..++ +.+.+|||+|..++......+++.+|++|+|
T Consensus 5 ~Kv~li-G~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (167)
T d1xtqa1 5 RKIAIL-GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 82 (167)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence 688888 9999999999888888888877777555443 23445555 4688999999998877777889999999999
Q ss_pred EeCCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++.-+......| ..+ ...++|+++|.||+|+.... ..+....+.+.+ . .+.+.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~-------------~---~~~~e~ 146 (167)
T d1xtqa1 83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-------------N---AAFLES 146 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---CEEEEC
T ss_pred cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHc-------------C---CEEEEE
Confidence 999865444333222 222 23468999999999985421 111122232222 1 244679
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.++.
T Consensus 147 Sak~~~~v~~~f~~li~ 163 (167)
T d1xtqa1 147 SAKENQTAVDVFRRIIL 163 (167)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999998864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.32 E-value=4.4e-12 Score=123.90 Aligned_cols=111 Identities=18% Similarity=0.081 Sum_probs=78.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|....-.. ...+.........+....+.++|+||...+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 57 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 57 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC------------------------CCCCSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc------------------------cccceeeEEEEEeeeeEEEEEecCCCcccc
Confidence 68999999999999999997432100 001111222345567889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~~~~ 335 (1043)
.......++.+|++++++|..+-........ +.... ....|++++.||.|+....
T Consensus 58 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~ 117 (160)
T d1r8sa_ 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117 (160)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred hhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence 9999999999999999999986433332222 22222 2457899999999987543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.1e-12 Score=129.10 Aligned_cols=115 Identities=17% Similarity=0.010 Sum_probs=76.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|..|+|||||+++++... ... ++. +..+ ...........+...+.+|||||+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~--f~~--------------~~~---~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~ 62 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ--FPE--------------VYV---PTVF-ENYVADIEVDGKQVELALWDTAGLED 62 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCS--------------SCC---CCSE-EEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCC--------------CcC---Ccee-eeccccccccccceeeeccccCccch
Confidence 579999999999999999997321 100 000 0000 11111122223446799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-H--hcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-K--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~--~~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++|+|+|..+.-+-+.. ..|... . ..++|+++|.||+|+...
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 121 (177)
T d1kmqa_ 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121 (177)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC
T ss_pred hcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccch
Confidence 998888889999999999999874332221 122222 2 246899999999998753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.4e-12 Score=129.46 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=112.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.|+.++ |+.++||+|...++..+.+.++..|....+.....+..++ +.+.+|||+|+.++...+..+++.+|++++|
T Consensus 4 iKi~vv-G~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 4 IKLVLL-GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEE-CCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 588888 9999999999999999998888888776666666666655 4799999999999988889999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCC-----HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGAD-----PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~-----~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|.++..+......+ .... ....|++++.||+|+.+.. .......+.+.. . .+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~---------------~-~~~~ 146 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK---------------G-LLFF 146 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH---------------T-CEEE
T ss_pred EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHc---------------C-CEEE
Confidence 999865443333322 2221 2356899999999984321 111112222221 1 2567
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+||++|.|+++++..+..-+
T Consensus 147 e~Sak~g~gV~e~F~~i~~~i 167 (170)
T d1ek0a_ 147 ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHTTS
T ss_pred EecCCCCcCHHHHHHHHHHHh
Confidence 899999999999999887544
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=9.3e-13 Score=132.76 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=107.0
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCc-------chHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHV-------DFTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~-------~~~~~~~~~~~~aD 75 (1043)
++-++ |.+.+||+|...+.+.........+++|++.....+.+. +..+.+|||||+. .+...+...+..++
T Consensus 3 ~Vaii-G~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 3 DVGLV-GFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CEEEE-SSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eEEEE-CCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 35566 999999999876655544455567788888888777764 4679999999974 24456677788899
Q ss_pred EEEEEEeCCCCC--chhHHHH-HH---HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVGGV--QSQTLTV-NR---QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~~~--~~~~~~~-~~---~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
.++++++..... ....... .. ... ..++|+++|+||+|+++ ..+.++.+.+.+. .
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~--~~~~~~~~~~~~~--------------~ 145 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFKEKLT--------------D 145 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHHHHCC--------------S
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh--HHHHHHHHHHHhc--------------c
Confidence 999999876322 2222111 11 111 13689999999999974 2333444444331 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcccc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTGRI 175 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~ 175 (1043)
..+++++||++|.|+++|++.+...+++.
T Consensus 146 ~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~ 174 (185)
T d1lnza2 146 DYPVFPISAVTREGLRELLFEVANQLENT 174 (185)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 24678999999999999999998887653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=7.1e-13 Score=135.68 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=89.7
Q ss_pred hhhcCEEEEEEeCCCC-CchhH-HHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGG-VQSQT-LTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~-~~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
..+.|.+++|+++.++ +.... ...+-.+...+++.++|+||+||.... ....++.+.+.+. ..-
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~-------------~~g 74 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-------------NIG 74 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-------------HHT
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHh-------------hcc
Confidence 3578999999998653 33222 334445567899999999999997532 1222333322221 011
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCce
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 227 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~ 227 (1043)
.+++.+|++++.|+++|.+.+.. +..+++|++|+|||||+|+|+.....
T Consensus 75 ~~v~~~Sa~~~~gl~~L~~~l~~-----------------------------~~~vl~G~SGVGKSSLiN~L~~~~~~-- 123 (231)
T d1t9ha2 75 YDVYLTSSKDQDSLADIIPHFQD-----------------------------KTTVFAGQSGVGKSSLLNAISPELGL-- 123 (231)
T ss_dssp CCEEECCHHHHTTCTTTGGGGTT-----------------------------SEEEEEESHHHHHHHHHHHHCC------
T ss_pred ccceeeecCChhHHHHHHHhhcc-----------------------------ceEEEECCCCccHHHHHHhhccHhHh--
Confidence 47799999999999998776521 34679999999999999999743211
Q ss_pred eeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 228 EMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 228 ~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
..+.+... ..+.+.+|....... ..+ =.+|||||..+|
T Consensus 124 ~t~~vs~~-----------~~rGrHTTt~~~l~~--~~g--g~iiDTPG~r~~ 161 (231)
T d1t9ha2 124 RTNEISEH-----------LGRGKHTTRHVELIH--TSG--GLVADTPGFSSL 161 (231)
T ss_dssp --------------------------CCCCCEEE--ETT--EEEESSCSCSSC
T ss_pred hhcccccc-----------cCCCceeeeeEEEEe--cCC--CEEEECCccccc
Confidence 11111111 223444665555443 333 258999998765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=8.4e-12 Score=123.89 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=72.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++... ... ++ +...+. .....+... ...+.+|||+|+
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~--f~~--------------~~---~~t~~~---~~~~~~~~~~~~~~~~~~d~~g~ 63 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSY--FVT--------------DY---DPTIED---SYTKQCVIDDRAARLDILDTAGQ 63 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC--CCS--------------SC---CTTCCE---EEEEEEEETTEEEEEEEEECC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc--------------cc---Cccccc---ceeeeeeeccccccccccccccc
Confidence 579999999999999999997321 100 00 011111 111222233 367999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+.-+.....-| +.......|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~ 123 (171)
T d2erya1 64 EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123 (171)
T ss_dssp --CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCT
T ss_pred ccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchh
Confidence 99999999999999999999999864333333322 22223567999999999975
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.3e-12 Score=130.01 Aligned_cols=116 Identities=16% Similarity=0.031 Sum_probs=75.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------ecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL----------WKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------~~~~ 267 (1043)
.+.+|+++|++|+|||||+++|+...-.-.. ....+.+......... ....
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 64 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKF-------------------ITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEE-------------------EEEEEEEEEEEEEEEEC-------CCEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCcc-------------------CCcccceeeEEEEEEecccccccccccceE
Confidence 3567999999999999999999732211000 0000111111111111 1135
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH-H----hcCCCeEEEEeccCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM-K----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~-~----~~~~p~ivviNKiD~~ 332 (1043)
.+.++||||+.+|.......++.+|++|+|+|.......+....|..- . ....|+++|.||+|+.
T Consensus 65 ~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 134 (186)
T d2f7sa1 65 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 134 (186)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred EeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch
Confidence 789999999999998888899999999999999875444333333321 1 2345788999999975
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.9e-12 Score=128.07 Aligned_cols=112 Identities=22% Similarity=0.175 Sum_probs=75.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE--ecCeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDtPG~ 277 (1043)
.+|+++|..|+|||||+++|+... . ..+....++.......+. ...+.+.+|||||+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDT--F-------------------DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--C-------------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC--C-------------------CCccccceeecceeEEEEEeccccEEEEEECCCc
Confidence 469999999999999999997321 0 011122222222222233 34568999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.++.......++.+|++++|+|..+....+.. ..+..+. ....|++++.||.|..
T Consensus 67 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~ 126 (177)
T d1x3sa1 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126 (177)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc
Confidence 99988888889999999999998864333322 2233332 2346788999999965
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=9e-12 Score=123.63 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=72.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++... ... . + ....+... ......++ ..+.+|||+|.
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~--f~~------~--------~---~~T~~~~~---~~~~~~~~~~~~l~~~d~~g~ 60 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGT--FRE------S--------Y---IPTVEDTY---RQVISCDKSICTLQITDTTGS 60 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC--CCS------S--------C---CCCSCEEE---EEEEEETTEEEEEEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC------c--------c---Ccceeecc---ccceeeccccceecccccccc
Confidence 469999999999999999997421 100 0 0 00011111 11122233 56788999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-----~~~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++++|+|+.+.-..... ..+... ...++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~ 121 (171)
T d2erxa1 61 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121 (171)
T ss_dssp SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred ccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccc
Confidence 99999999999999999999999863322222 222222 12567999999999974
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.30 E-value=8.9e-12 Score=123.39 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=74.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|..|+|||||+++++... ... ++ +...+.... ...........+.+||+||+.
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~--f~~--------------~~---~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~ 63 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVE--------------DY---EPTKADSYR-KKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCS--------------CC---CTTCCEEEE-EEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC--CCc--------------cc---CCccccccc-ccccccccccccccccccccc
Confidence 5689999999999999999997321 100 00 011121111 111122234678899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
++.......++.+|++++|+|..+....+....| .... ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~ 122 (168)
T d1u8za_ 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred chhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc
Confidence 9988888899999999999999975554444333 2222 3578999999999964
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.8e-12 Score=133.17 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=81.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+|+|++|+|||||+|+|+.... ..++|.......+.+++..+.++|||||..
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~-------------------------~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~ 58 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV-------------------------RPTVVSQEPLSAADYDGSGVTLVDFPGHVK 58 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC-------------------------CCBCCCSSCEEETTGGGSSCEEEECCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-------------------------CCeEEecceEEEEEeCCeEEEEEecccccc
Confidence 4799999999999999999974311 122333344445667788999999999987
Q ss_pred chHH----HHHHhHhcCeEEEEEeCCCCcch---------HHHHHHHHHHhcCCCeEEEEeccCCCCCCH
Q psy11896 280 FTVE----VERALRVLDGAILVLCAVGGVQS---------QTLTVNRQMKRYDVPCIAFINKLDRLGADP 336 (1043)
Q Consensus 280 f~~e----~~~~l~~~D~~ilVvda~~g~~~---------~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 336 (1043)
+... ...+...+|.+++++|+...... ++...++.+...++|+++|+||+|+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 59 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 5544 44556777999999999865432 223334455567899999999999987654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5.4e-13 Score=132.63 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... ... + ..+.-|..+.............+.+|||||..+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~--f~~--------------~---~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 64 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGE--FEK--------------K---YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-------C--------------C---EEEETTEEEEEEEECBTTCCEEEEEEECTTHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc--------------c---cccceeccccccccccccccccccccccccccc
Confidence 479999999999999999986321 100 0 011122222222222222456899999999888
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH--HhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM--KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~--~~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|..+..+-+...-| ... ...++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 121 (170)
T d1i2ma_ 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121 (170)
T ss_dssp HSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSC
T ss_pred cceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhh
Confidence 877777788999999999999975443332222 222 235789999999999863
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.3e-11 Score=121.86 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|+... ... . .....+.+.... .........+.+||+||+..
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~--~~~------~-----------~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~ 63 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNH--FVD------E-----------YDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC--CCC------S-----------CCCCSEEEEEEE-EEETTEEEEEEEEEECCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC------c-----------cCCccceeeccc-eeeeceeeeeeeeeccCccc
Confidence 469999999999999999997421 000 0 000111111111 11112246789999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH----hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~----~~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|..+...-+...-|.. .. ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (166)
T d1ctqa_ 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121 (166)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS
T ss_pred cccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc
Confidence 99988999999999999999987544433333322 22 2468999999999975
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5.1e-12 Score=124.98 Aligned_cols=113 Identities=20% Similarity=0.131 Sum_probs=75.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++...-... + ....+ ...............+.+||++|...
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~----------------~---~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~ 63 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK----------------Y---DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC----------------C---CTTCC-EEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCc----------------c---CCcee-eeeeeeeecCcceEeeccccCCCccc
Confidence 5799999999999999999973211000 0 00011 11111111212235788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++++|+|..+...-....-| ... ...++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 121 (167)
T d1kaoa_ 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred cccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh
Confidence 999999999999999999999964433333333 222 22468999999999975
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=8.7e-12 Score=125.16 Aligned_cols=119 Identities=9% Similarity=0.111 Sum_probs=73.0
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
|.++..+|+++|++|+|||||+|+|+....... ....+.+.........+.+......++
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR--------------------TSKTPGRTQLINLFEVADGKRLVDLPG 71 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC---------------------------------CCEEEEEEETTEEEEECCC
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEe--------------------ecccccceeeccceecccccceeeeec
Confidence 345578899999999999999999974322111 011122222333333444555555555
Q ss_pred CCCCCch-----------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFT-----------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~-----------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++..... .........++.++.+.++..+...+....+........+.++++||+|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~ 141 (188)
T d1puia_ 72 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 141 (188)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccC
Confidence 5532211 1112222455567778888899999998888888899999999999999863
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=6.2e-12 Score=124.74 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=77.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... . .+. .....|..+.............+.+|||+|+.+
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~--f---------------~~~--~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~ 64 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSND--F---------------AEN--KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--C---------------CTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--C---------------Ccc--ccccccceeeccccccccccccccccccCCchh
Confidence 479999999999999999997321 0 000 111222333322222323346899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++++|+|..+.........|. ... ....|.+++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~ 121 (170)
T d1ek0a_ 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccc
Confidence 9888889999999999999999754444333332 222 2456899999999975
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.28 E-value=1.9e-11 Score=121.66 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=75.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|.... ... .....+ .........+..+.++|++|+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~--~~~------------------~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~ 71 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE--VVH------------------TSPTIG----SNVEEIVINNTRFLMWDIGGQES 71 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS--CEE------------------EECCSC----SSCEEEEETTEEEEEEECCC---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CCc------------------cccccc----eeEEEEeecceEEEEeccccccc
Confidence 679999999999999999997422 111 001111 12233456788999999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHH----HhcCCCeEEEEeccCCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~----~~~~~p~ivviNKiD~~~~~ 335 (1043)
+.......+..++++++++|..+......... +... ...+.|+++|.||+|+....
T Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (177)
T d1zj6a1 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 132 (177)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred cccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC
Confidence 87778888899999999999986544333222 1222 23577999999999987544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.5e-12 Score=127.27 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=76.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+-++|+++|..|+|||||+++|+... ... . .....+... ..........+.+.++||+|.
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~--f~~------~-----------~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~ 62 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVD------S-----------YDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 62 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSC--CCS------C-----------CCSSCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCC--CCc------c-----------cCcceeccc-ceEEecCcEEEEeeecccccc
Confidence 45789999999999999999997321 100 0 000111111 111122223467889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+.-..+....|. .. ...++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 122 (167)
T d1xtqa1 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122 (167)
T ss_dssp CTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG
T ss_pred cccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccc
Confidence 998776677789999999999999765444443332 22 23568999999999975
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.6e-12 Score=128.39 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=77.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~li 272 (1043)
|...+.+|+++|..|+|||||+++|+... ... ++. .+........... ..+.+++|
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~--------------~~~------~Ti~~~~~~~~~~~~~~~~l~i~ 62 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDA--FPE--------------EYV------PTVFDHYAVSVTVGGKQYLLGLY 62 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSS--CCC--------------SCC------CSSCCCEEEEEESSSCEEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCC--CCC--------------cCC------CceeeeeeEEEeeCCceEEeecc
Confidence 34457899999999999999999997321 100 000 0000111111222 23678899
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHH---HhcCCCeEEEEeccCCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
||||+..|.......++.+|++++|+|+.+..+-+. ...|... ...+.|+++|.||+|+..
T Consensus 63 D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 127 (185)
T d2atxa1 63 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127 (185)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred cccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence 999999998888888999999999999987433221 1222222 234789999999999874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=1.1e-12 Score=132.18 Aligned_cols=155 Identities=16% Similarity=0.037 Sum_probs=108.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |+.++||+|+..++..+.+..+..|.+..+.....+...+ ..+.+|||||+.++...+..++..+|++++
T Consensus 2 ~~Kv~vv-G~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (184)
T d1vg8a_ 2 LLKVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 80 (184)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEE
Confidence 5799988 9999999999888888887777666555544444444443 479999999999888888889999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH-------hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK-------RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~-------~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|.++..+.....-| ..+. ..++|+++|+||+|+.+... .+..+.+... ....++
T Consensus 81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~ 145 (184)
T d1vg8a_ 81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---------------KNNIPY 145 (184)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------TTSCCE
T ss_pred eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHH---------------hcCCeE
Confidence 9999753332222111 1121 23579999999999865321 1111111111 112355
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||++|.|++++++.+....
T Consensus 146 ~e~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 146 FETSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHH
Confidence 7899999999999999887543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.7e-12 Score=128.06 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=104.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
+||+.++ |+.++||||...+.+.+.++.+..+.++.......+... ...+.+||++|...... .+..+++++|++|
T Consensus 2 ~~Kv~li-G~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 2 IFKIIVI-GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred EEEEEEE-CCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 5899999 999999999999888888887777766555544444443 45799999999987654 3567899999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|.++..+.... ..+..+. ..++|+++|+||+|+.... ..+..+.+.+.. . .+++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~ 144 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-------------S---MPLF 144 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------T---CCEE
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHC-------------C---CEEE
Confidence 99999864333322 2222222 2367999999999985421 112222222221 1 2457
Q ss_pred eeeeccc---CCcchHHHHHH
Q psy11896 152 GISAHID---SGKTTLTERIL 169 (1043)
Q Consensus 152 ~iSa~~g---~Gi~~L~~~l~ 169 (1043)
.+||++| .|++++++.++
T Consensus 145 e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 145 ETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC
T ss_pred EEecccCCcCcCHHHHHHHhC
Confidence 7999875 58888887653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.2e-11 Score=123.26 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=77.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDt 274 (1043)
+.+.+|+++|.+|+|||||+++++... ... + .....+.+... ...... ...+.++|+
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~--~~~--------------~---~~~t~~~~~~~--~~~~~~~~~~~~~i~d~ 62 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNK--FDT--------------Q---LFHTIGVEFLN--KDLEVDGHFVTMQIWDT 62 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSC--CCC---------------------CCSEEEEE--EEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC--CCC--------------c---cccceeeeeee--eeeeecCceeeEeeecc
Confidence 457899999999999999999997421 100 0 00111222222 222233 357789999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH-------hcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~-------~~~~p~ivviNKiD~~ 332 (1043)
+|..++.......+..+|+++++.|......-+....|. ... ..++|+++|.||+|+.
T Consensus 63 ~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~ 128 (174)
T d1wmsa_ 63 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128 (174)
T ss_dssp CCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred cCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence 999999888888999999999999998654333333222 111 2367999999999975
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=123.45 Aligned_cols=113 Identities=17% Similarity=0.073 Sum_probs=76.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
+.+|+++|.+|+|||||+++++...-. .+.....+.........+. ...+.++|++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 61 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQ---------------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC---------------------C-----CCSSEEEEEEEETTEEEEEEEECCTT
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCC---------------------CCcccceeeccceeeeeeeeeEEEEEeecccC
Confidence 457999999999999999999732110 0111122222222223333 46789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+..+.......++.+|++|+|+|..+...-. ....|..+.+ .++|+++|.||+|..
T Consensus 62 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~ 121 (173)
T d2a5ja1 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121 (173)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchh
Confidence 9998888888899999999999998633222 2233333333 467999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.1e-12 Score=130.87 Aligned_cols=163 Identities=11% Similarity=0.113 Sum_probs=107.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.|+.++ |+.++||||...+++.+.++.+..|.+... .......++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 4 iKvvll-G~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 4 IKCVVV-GDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 588888 999999999998888888887777755433 233344443 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|.++.-+.+... .+. .+. ..+.|+++|.||+|+..... ..+.+...-...+.. ..+. ......+.+.+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~ 157 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETAEKLA--RDLKAVKYVEC 157 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHH--HHHHHHTTTCCCCCHHHHHHHH--HHTTCSCEEEC
T ss_pred cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccch--hhhhhhhcccccccHHHHHHHH--HHcCCCeEEEE
Confidence 9998654333321 122 222 24789999999999864211 111111000000000 0000 00112345779
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 158 SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 158 SALTQKGLKNVFDEAILA 175 (191)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHH
Confidence 999999999999988754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=1.8e-11 Score=121.23 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=76.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..++|||||+++++... ... . .+...+.. .............+.+||++|+.+
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~--~~~--------------~---~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~ 64 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKI--FVP--------------D---YDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEE 64 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCT--------------T---CCTTCCEE-EEEEEEETTEEEEEEEEECCSCGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc--------------c---cCcceeec-cccccccccccccccccccccccc
Confidence 579999999999999999997321 000 0 00011111 111122223346788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.......++.+|++++|+|..+.-+-....-| +.....++|++++.||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~ 123 (169)
T d1x1ra1 65 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123 (169)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred cccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh
Confidence 988888899999999999999975433332222 222345789999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6e-12 Score=126.51 Aligned_cols=113 Identities=17% Similarity=0.060 Sum_probs=75.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|+... ... ++. ..-+.. .........+...+.+||++|+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~--f~~--------------~~~---~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~ 65 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA--FPG--------------EYI---PTVFDN-YSANVMVDGKPVNLGLWDTAGQED 65 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS--CCS--------------SCC---CCSCCE-EEEEEEETTEEEEEEEECCCCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc--------------ccc---cceeec-eeeeeeccCcceEEEeeccccccc
Confidence 579999999999999999997321 100 000 000101 111122233456788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHH---HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~---~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|+|+.+..+-+.... |... ...++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred chhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 98888888999999999999987544332221 2222 23467999999999975
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.6e-11 Score=121.42 Aligned_cols=113 Identities=20% Similarity=0.140 Sum_probs=76.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... ... .+ ....+... ............+.+||++|+.+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~--f~~--------------~~---~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~ 63 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQGI--FVE--------------KY---DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCC--------------SC---CCCSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--------------cc---CCcccccc-ceeEEeeeeEEEeccccccCccc
Confidence 469999999999999999997321 100 00 00001011 11111222346799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++|+|+|..+..+-+...-| ..+. ..++|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~ 121 (167)
T d1c1ya_ 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred ccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc
Confidence 999888999999999999999975444443333 2222 2467999999999975
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=3.1e-12 Score=128.81 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=77.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|.+|+|||||+++|+... ... . .....|.+..............+.++||||+.
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~--f~~--------------~---~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 62 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKK--FSN--------------Q---YKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC--CCS--------------S---CCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC--CCC--------------C---cCCccceeeeeeeeeeCCceEEEEeeecCCcc
Confidence 4579999999999999999997321 100 0 00122233333333333345688999999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH-------hcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~-------~~~~p~ivviNKiD~~~ 333 (1043)
++.......+..+|++++++|..+........-|. ... ..++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~ 125 (184)
T d1vg8a_ 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 125 (184)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred cccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence 88887888889999999999998644333332232 111 23579999999999753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=6.7e-12 Score=124.13 Aligned_cols=115 Identities=22% Similarity=0.090 Sum_probs=71.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|..|+|||||+++++... ... . ..+..+................+.+|||+|..
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~--f~~------~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 63 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENK--FND------K-----------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC--CCS------S-----------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCC--CCc------c-----------cccccccchheeeeccCCccceeeeeccCCcc
Confidence 4579999999999999999997321 100 0 01111222222222222234788999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-H---HHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-Q---MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~---~~~~~~p~ivviNKiD~~ 332 (1043)
++.......++.+|++++|+|..+.-+-+....|. . ......|+++|.||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 121 (167)
T d1z08a1 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121 (167)
T ss_dssp ------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred eecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccc
Confidence 98888888889999999999999755444333332 2 224567888999999975
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8.1e-13 Score=133.03 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=106.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.|+.++ |++++||||+..+++.+.+..+..|.+. +.....+..++ .++.+||++|+..+......+++.+|++++|
T Consensus 6 iKivvi-G~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (183)
T d1mh1a_ 6 IKCVVV-GDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (183)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeee
Confidence 588888 9999999999988888888777666433 33333444443 4689999999999988888899999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc---cccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS---NESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+.+... .+. .+. ..++|+++|+||+|+.... ...+........... ...+. ......+++.+
T Consensus 84 ~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~E~ 159 (183)
T d1mh1a_ 84 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLEC 159 (183)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEEC
T ss_pred eccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhh--hhhhhhhhccccchhhHHHHHHH--HHcCCceEEEc
Confidence 9998644333221 122 222 2468999999999985421 111222111100000 00000 01122456789
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++|+.+...
T Consensus 160 SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 160 SALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH
Confidence 999999999999988753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.23 E-value=1.8e-11 Score=119.35 Aligned_cols=152 Identities=11% Similarity=-0.014 Sum_probs=105.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |++++||+|...+...+.+.. .+.+.............++.+||+||...+......+++.++++++++|.
T Consensus 2 kivlv-G~~~vGKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~ 77 (160)
T d1r8sa_ 2 RILMV-GLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (160)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHCSSC---CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCc---cccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence 77888 999999999987766555432 23333444556667788999999999999999999999999999999999
Q ss_pred CCCCchhHHHH-HH-HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQTLTV-NR-QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~~~~~-~~-~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
.+......... +. .+. ....|++++.||.|+.+....+. +...... .+. . ....+++++||++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~---i~~~~~~-----~~~--~-~~~~~~~~~SAktg 146 (160)
T d1r8sa_ 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE---ITDKLGL-----HSL--R-HRNWYIQATCATSG 146 (160)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---HHHHTTG-----GGC--S-SCCEEEEECBTTTT
T ss_pred cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHH---HHHHHHH-----HHH--h-hCCCEEEEeECCCC
Confidence 86443333221 11 221 23578999999999976543321 1111110 011 1 11246789999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
+|++++++.|..
T Consensus 147 ~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 147 DGLYEGLDWLSN 158 (160)
T ss_dssp BTHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 999999998875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=2.4e-11 Score=118.77 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=80.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|+... ... .+.|.........+++..+.++|++|+..+
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR--LAT----------------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCC----------------------CCCCCSCEEEEECCTTCCEEEEECCCSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCe----------------------eeceeeEeEEEeccCCeeEEEEeeccchhh
Confidence 68999999999999999997432 110 112333334456677889999999999888
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-H----HhcCCCeEEEEeccCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-M----KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~----~~~~~p~ivviNKiD~~~~ 334 (1043)
.......+..++++++++|..+-........+.. . ...+.|++++.||+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~ 116 (166)
T d2qtvb1 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116 (166)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred hhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc
Confidence 8888888899999999999987555444333222 2 2246689999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.1e-12 Score=125.71 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=98.4
Q ss_pred CCccceeeeeecccccccCCccccCCChhhhhh-cCCccccceEEEEecCe--eEEEEeCCC---CcchHHHHHHHhhhc
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMDSMELERQ-RGITIQSAATYTLWKDH--NINIIDTPG---HVDFTVEVERALRVL 74 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~-~G~T~~~~~~~~~~~~~--~i~liDTPG---~~~~~~~~~~~~~~a 74 (1043)
+.||+.++ |+.++||||....+.......+.. +.+..+.....+..++. .+.+||+|| +.++ ....+++.+
T Consensus 2 ~~~Kv~lv-G~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~ 78 (172)
T d2g3ya1 2 TYYRVVLI-GEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVG 78 (172)
T ss_dssp CEEEEEEE-CCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred CEEEEEEE-CCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccc
Confidence 46999999 999999999977666555443333 33444444455555544 578889775 4444 344578899
Q ss_pred CEEEEEEeCCCCCchhHHHH-HHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 75 DGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~-~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
|++|+|+|.++..+...... +..+.. .++|+++|+||+|+.+.. ..+..+.+.+.+ .
T Consensus 79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~-------------~--- 142 (172)
T d2g3ya1 79 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-------------D--- 142 (172)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---
T ss_pred ceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHc-------------C---
Confidence 99999999986433332222 222322 368999999999986421 111112222221 1
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+.+.+||++|.|++++++.++..+
T Consensus 143 ~~~~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 143 CKFIETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 2457799999999999999887543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.9e-11 Score=123.66 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=75.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDtPG~ 277 (1043)
.+|+++|..|+|||||+++++... ... +....+. ......... +...+.+|||||+
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~--f~~-------------------~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~ 61 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNK--FPS-------------------EYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQ 61 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCS-------------------SCCCCSE-EEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC--CCC-------------------CcCCcee-eecceeEeeCCceeeeeccccccc
Confidence 479999999999999999997321 100 0011111 111111222 3357899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH---HhcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|..+.-+-+... .|... ...+.|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~ 121 (191)
T d2ngra_ 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121 (191)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGG
T ss_pred hhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccc
Confidence 999888888889999999999999754333322 22222 224789999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.19 E-value=2.7e-11 Score=120.58 Aligned_cols=156 Identities=15% Similarity=0.024 Sum_probs=105.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.||+.++ |..++||||...+...+.... .. .|.......+...+.++.++|++|+......+...+..++++++|+
T Consensus 15 ~~kI~vv-G~~~~GKSsLi~rl~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 90 (177)
T d1zj6a1 15 EHKVIIV-GLDNAGKTTILYQFSMNEVVH-TS--PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 90 (177)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTTSCEE-EE--CCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCc-cc--cccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeec
Confidence 5888888 999999999987766655432 22 2333445566678899999999999988888889999999999999
Q ss_pred eCCCCCchhHHHH-HHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~~-~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|.++......... .... ...+.|+++|+||+|++...... ++.+.+. +.. ......+++++||+
T Consensus 91 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~i~~~~~-------~~~-~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 91 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA---EISQFLK-------LTS-IKDHQWHIQACCAL 159 (177)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHH---HHHHHHT-------GGG-CCSSCEEEEECBTT
T ss_pred ccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHH---HHHHHHH-------HHh-hHhcCCEEEEEeCC
Confidence 9986544333221 1111 23578999999999997654332 2222211 000 11123578999999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|+|++++++.|...+
T Consensus 160 tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRL 175 (177)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=2.9e-12 Score=128.44 Aligned_cols=164 Identities=9% Similarity=-0.024 Sum_probs=105.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||||+..++..+.++++..|.+. +.....+..++ +.+.+|||+|+..+......+++.+|++|+
T Consensus 2 ~~Kivli-G~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il 79 (179)
T d1m7ba_ 2 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 79 (179)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEE-CCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhe
Confidence 5788998 9999999999998988888887777442 23333444443 468899999999988888889999999999
Q ss_pred EEeCCCCCchhHH-HHHHH-HH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~-l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++.-+.+.. ..|.. +. ..+.|+++|.||+|+...... . ..+...-...+.. ..+. ........+.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~-~-~~~~~~~~~~V~~~e~~~~a--~~~~~~~y~E 155 (179)
T d1m7ba_ 80 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST-L-VELSNHRQTPVSYDQGANMA--KQIGAATYIE 155 (179)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH-H-HHHHTTTCCCCCHHHHHHHH--HHHTCSEEEE
T ss_pred eeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchh-h-HHHhhhhcCcchHHHHHHHH--HHhCCCeEEE
Confidence 9999865433322 22222 22 247899999999998542111 1 1111000000000 0000 0011234577
Q ss_pred eeecccC-CcchHHHHHHhh
Q psy11896 153 ISAHIDS-GKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~-Gi~~L~~~l~~~ 171 (1043)
+||++|. |++++++.+...
T Consensus 156 ~SAk~~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 156 CSALQSENSVRDIFHVATLA 175 (179)
T ss_dssp CBTTTBHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCHHHHHHHHHHH
Confidence 9999998 599999887643
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.1e-12 Score=125.42 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=96.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+++.+.+... .+ ++.+.....+..++ ..+.+|||+|+.++. +++.+|++|+
T Consensus 5 ~~ki~vl-G~~~vGKTsLi~~~~~~~f~~~-~~-t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il 76 (175)
T d2bmja1 5 ELRLGVL-GDARSGKSSLIHRFLTGSYQVL-EK-TESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF 76 (175)
T ss_dssp EEEEEEE-CCTTTTHHHHHHHHHHSCCCCC-CC-SSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHhCCCCCc-CC-ccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence 3788888 9999999999888888776433 22 22232234445555 469999999998753 6889999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH------hcCCCEEEEEecCCCCCCCHHHH-HHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK------RYDVPCIAFINKLDRLGADPYRV-INQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~------~~~~piilvlNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|.++.-+.+.... ..++. ....|+++|+||.|+........ .++...... . ....+.+
T Consensus 77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~---------~---~~~~~~~ 144 (175)
T d2bmja1 77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA---------D---MKRCSYY 144 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH---------T---STTEEEE
T ss_pred EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH---------H---hCCCeEE
Confidence 999986544333322 22332 23468999999988743211100 011111110 0 1123557
Q ss_pred eeeecccCCcchHHHHHHhh
Q psy11896 152 GISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
.+||++|.|+++++..++..
T Consensus 145 e~SAk~~~~v~~~F~~l~~~ 164 (175)
T d2bmja1 145 ETCATYGLNVDRVFQEVAQK 164 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHH
T ss_pred EeCCCCCcCHHHHHHHHHHH
Confidence 79999999999999887653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=8.1e-11 Score=116.28 Aligned_cols=112 Identities=21% Similarity=0.109 Sum_probs=71.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... ... ++. +.-|..+.. ......+...+.+|||||...
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~--f~~--------------~~~---pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~ 62 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKR--FIW--------------EYD---PTLESTYRH-QATIDDEVVSMEILDTAGQED 62 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCS--------------CCC---TTCCEEEEE-EEEETTEEEEEEEEECCCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCC--------------ccC---Cceeccccc-cccccccceEEEEeecccccc
Confidence 358999999999999999997421 100 000 011111111 111112236789999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-H----HHhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-Q----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~----~~~~~~p~ivviNKiD~~ 332 (1043)
|. .....++.+|++++|+|..+........-|. . ....+.|+++|.||+|+.
T Consensus 63 ~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (168)
T d2atva1 63 TI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119 (168)
T ss_dssp CH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred cc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence 74 4566789999999999999754443332221 1 223468999999999974
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.16 E-value=1.1e-10 Score=114.61 Aligned_cols=111 Identities=19% Similarity=0.059 Sum_probs=80.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++++...... ...|..........++..+.++|+||+..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEVVT------------------------TIPTIGFNVETVTYKNLKFQVWDLGGLTS 61 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC------------------------CCCCSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc------------------------eecccceeeeeeccCceEEEEeecccccc
Confidence 579999999999999999997431100 01122233445667889999999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~~~ 334 (1043)
+..........++++++++|............+ ... .....|++++.||.|+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~ 121 (169)
T d1upta_ 62 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121 (169)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc
Confidence 888888888999999999999865544444332 221 2345688899999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.6e-11 Score=118.58 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=68.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC--
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG-- 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG-- 276 (1043)
-.+|+++|..|+|||||++++......... . -...|.........+..+...+.+||+|+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~---------------~---~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 64 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS---------------D---CEVLGEDTYERTLMVDGESATIILLDMWENK 64 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCC---------------C------CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccc---------------c---ccceeeecceeeeccCCceeeeeeecccccc
Confidence 468999999999999999999743221110 0 00111111222222223345677888765
Q ss_pred -CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 277 -HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 -~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
+.+|. ...+++.+|++|+|+|..+...-.....| .... ..++|+++|.||+|+.
T Consensus 65 g~e~~~--~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 124 (172)
T d2g3ya1 65 GENEWL--HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124 (172)
T ss_dssp HHHHHH--HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred cccccc--ccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc
Confidence 44442 23456889999999999874433333333 2222 2468999999999975
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=5.5e-11 Score=121.80 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=78.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE-EecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT-LWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~i~liDtPG~~ 278 (1043)
|+|+++|++|+|||||+++|+....... ....+.+. ....+ ...+..+.++|+||+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~--------------------~~t~~~~~--~~~~~~~~~~~~~~~~d~~g~~ 58 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT--------------------QTSITDSS--AIYKVNNNRGNSLTLIDLPGHE 58 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB--------------------CCCCSCEE--EEEECSSTTCCEEEEEECCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc--------------------cCCeeEEE--EEEEEeeeeeeeeeeeeccccc
Confidence 6899999999999999999984321110 00111111 11111 2346789999999999
Q ss_pred CchHH-HHHHhHhcCeEEEEEeCCCCcch---HHHHHHHHHH-----hcCCCeEEEEeccCCCCCCH-HHHHHHHHH
Q psy11896 279 DFTVE-VERALRVLDGAILVLCAVGGVQS---QTLTVNRQMK-----RYDVPCIAFINKLDRLGADP-YRVINQMRQ 345 (1043)
Q Consensus 279 df~~e-~~~~l~~~D~~ilVvda~~g~~~---~t~~~~~~~~-----~~~~p~ivviNKiD~~~~~~-~~~~~~i~~ 345 (1043)
.+... +...++.+|++++|+|+.+.... ....+...+. ..++|+++|+||+|+..+.. ++..+.+.+
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~ 135 (207)
T d2fh5b1 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 135 (207)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHH
Confidence 88654 45566899999999999864332 1122222221 24578999999999986543 333344433
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.12 E-value=2e-10 Score=114.59 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=75.1
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|.+|+|||||+++|...... . . ..|.........+++..++++|++|+.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~--~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRLG--Q------------------H----VPTLHPTSEELTIAGMTFTTFDLGGHI 68 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCEEEEETTEEEEEEEECC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc--c------------------e----ecccccceeEEEecccccccccccchh
Confidence 357999999999999999999632110 0 0 012222333456778889999999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHH----hcCCCeEEEEeccCCCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMK----RYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~----~~~~p~ivviNKiD~~~~~ 335 (1043)
++........+..+++++++|..+..... ....+.... ..+.|++++.||.|+..+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~ 130 (186)
T d1f6ba_ 69 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130 (186)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred hhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC
Confidence 88777778889999999999988643222 222222222 2468999999999997653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.5e-10 Score=113.50 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=69.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|..|+|||||+++++...-... ....+.+. ........+...+.+|||+|+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~--------------------~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~ 63 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL--------------------EKTESEQY-KKEMLVDGQTHLVLIREEAGAP 63 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCC--------------------CCSSCEEE-EEEEEETTEEEEEEEEECSSCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCc--------------------CCccceeE-EEEeecCceEEEEEEeeccccc
Confidence 46899999999999999999974321000 00111111 1112222334678999999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH------hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~------~~~~p~ivviNKiD~~ 332 (1043)
++. .++.+|++|+|+|..+.-+-+...-|. ++. ...+|+++|.||.|..
T Consensus 64 ~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d 119 (175)
T d2bmja1 64 DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119 (175)
T ss_dssp CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred ccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence 753 578899999999998754433333332 221 2456899999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=8.7e-11 Score=115.53 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=76.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
++.+|+++|..|+|||||+++++... ... . .....+.+..........+...+.++|++|.
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGR--FPD------R-----------TEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCS------S-----------CCCCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCC--CCC------c-----------cCcccccccceeeeeeeccceEEEEEeccCc
Confidence 46789999999999999999997321 100 0 0112222333333334445678999999998
Q ss_pred CCchHH-HHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVE-VERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e-~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
..+... ....++.+|++++|+|..+..+-.... .+..+. ..++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~ 122 (165)
T d1z06a1 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122 (165)
T ss_dssp HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred hhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch
Confidence 665443 455789999999999998754333332 233322 2467999999999975
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=8.3e-11 Score=114.82 Aligned_cols=160 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.|+.++ |++++||+|...+...+... +.+.|...........+.++.++||+|...+.......+..++++++++|
T Consensus 1 ~KI~li-G~~nvGKSSLln~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (166)
T d2qtvb1 1 GKLLFL-GLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 76 (166)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCC---eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence 378888 99999999997766555443 23456677777777788899999999999998888899999999999999
Q ss_pred CCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 83 AVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 83 a~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
.++.........+ ... ...+.|++++.||.|+... ...+..+.+... ..............+++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~SA~ 151 (166)
T d2qtvb1 77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL-----NTTGSQRIEGQRPVEVFMCSVV 151 (166)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCS-----SCCC---CCSSCCEEEEEEBTT
T ss_pred ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhh-----hhhHHHhhcccCCCEEEEeeCC
Confidence 9864443332221 111 2346789999999999754 332222222110 0000001112233568999999
Q ss_pred ccCCcchHHHHHHhh
Q psy11896 157 IDSGKTTLTERILFY 171 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~ 171 (1043)
+|+|+++++++|.+|
T Consensus 152 tg~Gv~e~~~~l~~~ 166 (166)
T d2qtvb1 152 MRNGYLEAFQWLSQY 166 (166)
T ss_dssp TTBSHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 999999999988753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.08 E-value=1.4e-10 Score=115.81 Aligned_cols=167 Identities=11% Similarity=0.015 Sum_probs=104.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
..|+.++ |.+++||||...+...+... +..| |...+...+.+++..+.++|++|+..+...+....+..+.+++++
T Consensus 13 ~~kI~lv-G~~~vGKTsLl~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T d1f6ba_ 13 TGKLVFL-GLDNAGKTTLLHMLKDDRLG-QHVP--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 88 (186)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCc-ceec--ccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence 3588888 99999999998777666654 3333 444555667778899999999999988888889999999999999
Q ss_pred eCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 82 CAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.++........ .+... ...++|++++.||.|++... .....+.+......................++++|||
T Consensus 89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (186)
T d1f6ba_ 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence 988643322221 12111 12478999999999997643 3222222211110000000000111222357899999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
++|+|++++++++..++
T Consensus 169 ~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 169 LKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999887653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=3.3e-11 Score=121.74 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=104.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|++++ |+.++||||+..+...+.++ |.......+...+..+.+|||+|+.++...+..+++.++++++|+
T Consensus 2 e~Kivll-G~~~vGKTsl~~r~~~~~~~-------t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~ 73 (195)
T d1svsa1 2 EVKLLLL-GAGESGKSTIVKQMKIIHEA-------GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV 73 (195)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHHSC-------CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhhCCCC-------CccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence 4799999 99999999998776544433 334456677888999999999999999999999999999999999
Q ss_pred eCCCCCc---------hh--HHHHHHHHH----hcCCCEEEEEecCCCCC------------------CCHHHHHHHHHH
Q psy11896 82 CAVGGVQ---------SQ--TLTVNRQMK----RYDVPCIAFINKLDRLG------------------ADPYRVINQMRQ 128 (1043)
Q Consensus 82 Da~~~~~---------~~--~~~~~~~l~----~~~~piilvlNKiDl~~------------------~~~~~~~~~l~~ 128 (1043)
|.++... .. ....+..+. ..+.|+++++||+|+.. .+..+....+..
T Consensus 74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T d1svsa1 74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 153 (195)
T ss_dssp EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence 9874221 11 112222221 24679999999999621 111222222222
Q ss_pred hhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 129 KTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
.+.. ...........++.+||++|.|++++++.+.+.
T Consensus 154 ~f~~------~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 154 QFED------LNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp HHHT------TCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHH------HhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence 2211 111111122345679999999999999888754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.04 E-value=2.6e-10 Score=111.83 Aligned_cols=155 Identities=13% Similarity=-0.007 Sum_probs=110.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++||||...+.+.+.+.. ...|.......+..++..+.++|++|+..+..........++++++++
T Consensus 5 e~kI~iv-G~~~vGKSSLi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d1upta_ 5 EMRILIL-GLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 80 (169)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhCCCCcc---eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence 4688888 999999999987776665432 234555566677778999999999999998888888999999999999
Q ss_pred eCCCCCchhHHHH-HHH-H---HhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 82 CAVGGVQSQTLTV-NRQ-M---KRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 82 Da~~~~~~~~~~~-~~~-l---~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|..+......... +.. . .....|++++.||.|+..... .+....+...+ ......+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA 148 (169)
T d1upta_ 81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSA 148 (169)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCT
T ss_pred hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHH------------HhcCCCEEEEEeC
Confidence 9886444333222 122 1 233578999999999976432 22222221111 1112357899999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
++|+|++++++.+...+
T Consensus 149 ~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 149 TKGTGLDEAMEWLVETL 165 (169)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=3.5e-10 Score=127.23 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=74.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.||+|+|.+|+|||||+|+|+......... . ..+ ..++|.+.... ...++..+.||||||...
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~--~--------~~g------~~~tT~~~~~~-~~~~~~~~~l~DtPG~~~ 119 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGA--A--------KTG------VVEVTMERHPY-KHPNIPNVVFWDLPGIGS 119 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTS--C--------CCC------C----CCCEEE-ECSSCTTEEEEECCCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcc--C--------CCC------CCCCceeeeee-eccCCCeEEEEeCCCccc
Confidence 679999999999999999998543211100 0 000 11233333222 223456799999999644
Q ss_pred --chHH-HH--HHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 --FTVE-VE--RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 --f~~e-~~--~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+..+ .. ..+..+|.+++++| ..+..+...+++.+.+.++|+++|+||+|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 120 TNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 175 (400)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ccccHHHHHHHhhhhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccc
Confidence 3322 11 22456777766665 4578888899999999999999999999964
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.9e-11 Score=121.96 Aligned_cols=158 Identities=11% Similarity=-0.030 Sum_probs=101.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
++|++++ |++++||||...+. .+..+..| |+......+.+++..+.+|||+|+..+...+..+++.++++++++
T Consensus 2 ~iKivll-G~~~vGKTsll~r~---~f~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~ 75 (200)
T d1zcba2 2 LVKILLL-GAGESGKSTFLKQM---RIIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 75 (200)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHH---HHHHSCCC--CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHH---hcCCCCCC--eeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEE
Confidence 5799999 99999999997766 24444444 777777888999999999999999999999999999999999999
Q ss_pred eCCCCCch--------hH---HHHHHH-HH---hcCCCEEEEEecCCCCC-------------------CCHHHHHHHHH
Q psy11896 82 CAVGGVQS--------QT---LTVNRQ-MK---RYDVPCIAFINKLDRLG-------------------ADPYRVINQMR 127 (1043)
Q Consensus 82 Da~~~~~~--------~~---~~~~~~-l~---~~~~piilvlNKiDl~~-------------------~~~~~~~~~l~ 127 (1043)
|.++.... .. ...+.. +. ..++|+++++||+|+.. .+.....+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (200)
T d1zcba2 76 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 155 (200)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred EcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHH
Confidence 98854321 11 112222 21 24789999999999731 11222333333
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+.+... ..........++.+||+++.|++++++.+.+.
T Consensus 156 ~~f~~~------~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 156 ECFRGK------RRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp HHHHTT------CSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh------ccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence 333211 11111111223458999999999999887654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=1.4e-10 Score=115.75 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=74.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCc-eEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGI-TIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~gi-Ti~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+|+++|..|+|||||+.+++... ... +....+ ...........+.+.+.+|||+|+..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~--f~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 62 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC--FPE-------------------NYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCS-------------------SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--CCC-------------------ccCCceeecccccccccceEEeecccccccccc
Confidence 68999999999999999997321 100 000000 01111111222346788999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH---HhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM---KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~---~~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|..+..+-+.. ..|... ...+.|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (179)
T d1m7ba_ 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120 (179)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred ccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence 887777788999999999999875443322 223322 224789999999999753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.2e-09 Score=108.46 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=106.3
Q ss_pred eeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH---------HHhhhcC
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE---------RALRVLD 75 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~---------~~~~~aD 75 (1043)
.++ |.+++||+|.+.+.+..+.. ....+++|+.........+...+..+|+||......... .....+|
T Consensus 9 ~ii-G~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (179)
T d1egaa1 9 AIV-GRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVE 87 (179)
T ss_dssp EEE-CSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEE
T ss_pred EEE-CCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhcc
Confidence 344 99999999987666544433 344566666666777777788899999999864332211 1223578
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+++++.|+.. ...+.......+.+...|.++++||+|..... ........... ....+.+++++||
T Consensus 88 ~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~-~~~~~~~~~~~------------~~~~~~~~~~vSA 153 (179)
T d1egaa1 88 LVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK-ADLLPHLQFLA------------SQMNFLDIVPISA 153 (179)
T ss_dssp EEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH-HHHHHHHHHHH------------TTSCCSEEEECCT
T ss_pred eeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchh-hhhhhHhhhhh------------hhcCCCCEEEEeC
Confidence 8889999774 45555666666777788999999999987532 22222222111 1234457899999
Q ss_pred cccCCcchHHHHHHhhccc
Q psy11896 156 HIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++|.|+++|++.+..++++
T Consensus 154 ~~g~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 154 ETGLNVDTIAAIVRKHLPE 172 (179)
T ss_dssp TTTTTHHHHHHHHHTTCCB
T ss_pred cCCCCHHHHHHHHHHhCCC
Confidence 9999999999999988865
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.5e-09 Score=105.60 Aligned_cols=158 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc-----------hHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD-----------FTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-----------~~~~~~~~ 70 (1043)
.|+.++ |.+.+||+|...+....... .....++|...........+......++++... ........
T Consensus 17 ~~I~lv-G~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (188)
T d1puia_ 17 IEVAFA-GRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK 95 (188)
T ss_dssp EEEEEE-ECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhh
Confidence 577788 99999999976555544332 334455666665555556666666666665431 11222333
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
...++.++.+.|+..+...+.......+.....++++++||+|+.+.. .....+.+++.+.. .....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~-----------~~~~~~ 164 (188)
T d1puia_ 96 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLA-----------FNGDVQ 164 (188)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG-----------GCSCEE
T ss_pred hhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHh-----------hCCCCc
Confidence 445667788888888888888888888888899999999999987532 22233444443321 123457
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++++||++|.|+++|++.|.+++
T Consensus 165 ~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 165 VETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=3.8e-10 Score=114.17 Aligned_cols=159 Identities=11% Similarity=-0.022 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|++++ |+.++||||...+...+.+. .. .|+......+......+.+|||+|+..+...+..+++.++++++|+
T Consensus 2 e~Kiv~l-G~~~vGKTsll~r~~~~~~~--~~--pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 76 (200)
T d2bcjq2 2 ELKLLLL-GTGESGKSTFIKQMRIIHGS--GV--PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 76 (200)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHHTSS--CC--CCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhCCCCC--CC--ceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEee
Confidence 4799999 99999999998887666653 23 3666667778888899999999999999999999999999999999
Q ss_pred eCCCCCc-----------hhHHHHHHHH-H---hcCCCEEEEEecCCCCCC-------------------CHHHHHHHHH
Q psy11896 82 CAVGGVQ-----------SQTLTVNRQM-K---RYDVPCIAFINKLDRLGA-------------------DPYRVINQMR 127 (1043)
Q Consensus 82 Da~~~~~-----------~~~~~~~~~l-~---~~~~piilvlNKiDl~~~-------------------~~~~~~~~l~ 127 (1043)
|.++... ......|..+ . ..+.|+++++||+|+... +.....+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (200)
T d2bcjq2 77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL 156 (200)
T ss_dssp EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHH
T ss_pred eccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHH
Confidence 9874211 1122233332 2 246899999999997310 1111122222
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+. . ..... -....++.+||++|.|++++++.+.+..
T Consensus 157 ~~f~---~---~~~~~-~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 157 KMFV---D---LNPDS-DKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp HHHH---T---TCSCT-TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHH---H---hcccC-CCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 2211 1 11011 1123457799999999999999886543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.2e-09 Score=110.53 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=73.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|.++|..|+|||||++++.... ....|+......+.+++..+.++|++|+.
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~--------------------------~~~pTiG~~~~~~~~~~~~~~~~D~~gq~ 55 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIH--------------------------GQDPTKGIHEYDFEIKNVPFKMVDVGGQR 55 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH--------------------------SCCCCSSEEEEEEEETTEEEEEEEECC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--------------------------CCCCeeeeEEEEEeeeeeeeeeeccccee
Confidence 4679999999999999999993111 11124444556688899999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcch-----------HHHHHHHHH----HhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQS-----------QTLTVNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~-----------~t~~~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+........+.++++++++|..+.... .....|... ...+.|+++|.||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp -----CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred eecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 9888888888999999999999865321 111222222 23578999999999964
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=4.3e-09 Score=107.29 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=77.9
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchH-HHHHHHhhhcCEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFT-VEVERALRVLDGAILV 80 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~-~~~~~~~~~aD~iIlV 80 (1043)
-+++.|..++||||...+...+.+.. ..|++ ......+.+ .+..+.+|||||+.++. ..+..+++.+|++++|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v 78 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSI--TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 78 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-BCCCC--SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-ccCCe--eEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence 34555999999999977766655443 23433 334444443 35679999999999886 4567778999999999
Q ss_pred EeCCCCCch---hHHHHHHHHH-----hcCCCEEEEEecCCCCCCC-HHHHHHHHH
Q psy11896 81 LCAVGGVQS---QTLTVNRQMK-----RYDVPCIAFINKLDRLGAD-PYRVINQMR 127 (1043)
Q Consensus 81 vDa~~~~~~---~~~~~~~~l~-----~~~~piilvlNKiDl~~~~-~~~~~~~l~ 127 (1043)
+|+++.... ....+...+. ..++|+++|+||+|++++. .+...+.+.
T Consensus 79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~ 134 (207)
T d2fh5b1 79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLE 134 (207)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHH
Confidence 999853321 1122222222 2357899999999998653 333334433
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.80 E-value=1.2e-08 Score=107.45 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|.+|+|||||+|+|+....... ....++|.........+++..+++|||||..
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~v--------------------s~~~~~T~~~~~~~~~~~g~~i~viDTPGl~ 91 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSI--------------------SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 91 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCC--------------------CSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCceee--------------------cCCCCcceeEEEEEEEeccEEEEEEeeeccc
Confidence 36799999999999999999985432221 1134667777777788899999999999964
Q ss_pred C--c-hH----HHHHHh--HhcCeEEEEEeCCCC-cchHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 279 D--F-TV----EVERAL--RVLDGAILVLCAVGG-VQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--f-~~----e~~~~l--~~~D~~ilVvda~~g-~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+ . .. .+.... ...|++++|++.... +.......++.... ...++++|+||+|...
T Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 92 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 3 1 11 222222 456788888888754 55555555544432 2247899999999874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=3e-09 Score=108.41 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=79.8
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH----HHHHhhhcCEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE----VERALRVLDGAIL 79 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~----~~~~~~~aD~iIl 79 (1043)
.+.|+ |.+++||||...+.+.+ +..+++|++.....+.+++..+.+|||||+..+... ...+...++.+++
T Consensus 5 ~V~lv-G~~n~GKTSLln~l~~~----~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~ 79 (209)
T d1nrjb_ 5 SIIIA-GPQNSGKTSLLTLLTTD----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 79 (209)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHS----SCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHhCC----CCCCeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccce
Confidence 34555 99999999986665543 345789999888888888999999999999875444 4445666799999
Q ss_pred EEeCCCCCch--hH-------HHHHHHHHhcCCCEEEEEecCCCCCCC
Q psy11896 80 VLCAVGGVQS--QT-------LTVNRQMKRYDVPCIAFINKLDRLGAD 118 (1043)
Q Consensus 80 VvDa~~~~~~--~~-------~~~~~~l~~~~~piilvlNKiDl~~~~ 118 (1043)
++|+...... .. ...+......++|+++|+||+|+.+..
T Consensus 80 ~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 80 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 9998754322 11 112223344689999999999997654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.73 E-value=1.1e-09 Score=113.04 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=81.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.||++++ |+.++||||+......+ +.. .|+......+.+++..+.+||++|+..+...|..+++.++++++|+
T Consensus 6 ~~Killl-G~~~vGKTsll~~~~~~----~~~--pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~ 78 (221)
T d1azta2 6 THRLLLL-GAGESGKSTIVKQMRIL----HVV--LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 78 (221)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHH----HCC--CCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred cCEEEEE-CCCCCCHHHHHHHHhcC----CcC--CCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEE
Confidence 5899999 99999999997766432 222 3666777778889999999999999999999999999999999999
Q ss_pred eCCCCC--------chhH---HHHHHHH-H---hcCCCEEEEEecCCCC
Q psy11896 82 CAVGGV--------QSQT---LTVNRQM-K---RYDVPCIAFINKLDRL 115 (1043)
Q Consensus 82 Da~~~~--------~~~~---~~~~~~l-~---~~~~piilvlNKiDl~ 115 (1043)
|.+... .... ...+..+ . ..++|++|++||+|+.
T Consensus 79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 987321 1111 1222222 2 1468999999999984
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=9.3e-09 Score=103.19 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=77.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|.... . .|.......+.+.+..+.+|||+|+..
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~--------------------------~--~t~~~~~~~~~~~~~~~~i~D~~Gq~~ 54 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIH--------------------------E--AGTGIVETHFTFKDLHFKMFDVGGQRS 54 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH--------------------------S--CCCSEEEEEEEETTEEEEEEEECCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC--------------------------C--CCccEEEEEEEeeeeeeeeeccccccc
Confidence 469999999999999999985210 0 011223345778899999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcch-----------HHHHHHHHH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQS-----------QTLTVNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~-----------~t~~~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.++++++|+|..+.... .....|... ...+.|++++.||+|+.
T Consensus 55 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~ 122 (195)
T d1svsa1 55 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 122 (195)
T ss_dssp GGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred cccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence 999999999999999999998743211 122233332 23467999999999963
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=9.7e-09 Score=103.50 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=80.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|.++|..|+|||||+.++...... + -.|+......+.++...+.++|++|+..
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~------------------~-------~pTiG~~~~~~~~~~~~~~~~d~~g~~~ 57 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS------------------G-------VPTTGIIEYPFDLQSVIFRMVDVGGQRS 57 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS------------------C-------CCCCSCEEEEEECSSCEEEEEECCCSTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC------------------C-------CceeeEEEEEEeccceeeeecccccccc
Confidence 57999999999999999999522110 0 1233334455677889999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcc-----------hHHHHHHHHHH----hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQ-----------SQTLTVNRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~-----------~~t~~~~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
|.......++.++++++++|..+... ......|.... ..+.|++++.||.|+.
T Consensus 58 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~ 125 (200)
T d2bcjq2 58 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 125 (200)
T ss_dssp GGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred ccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence 99999999999999999999986421 22344454443 2467999999999964
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=2.8e-08 Score=86.56 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 572 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--- 572 (1043)
|.||++.|..++..++ |+++.+||.+|++++||.|.+.+.+.+.+|.+|. ....++++|.|||-+++ .|+
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aG~~v~l~l~~i~~~ 76 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVE----MHHEQLEQGVPGDNVGFNVKNVSVK 76 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEE----ETTEECSCBCTTCEEEEEESSCCTT
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCCceEEEEEEE----EcCcCcCEecCCCeEEEEEeCccHH
Confidence 4799999999999887 9999999999999999999999999999999998 44567899999999985 566
Q ss_pred ccccCcEEecCCCC
Q psy11896 573 DCASGDTFVTDKNN 586 (1043)
Q Consensus 573 ~~~~Gdtl~~~~~~ 586 (1043)
++..|+.|+ ++++
T Consensus 77 ~i~rG~vl~-~~~~ 89 (94)
T d1f60a1 77 EIRRGNVCG-DAKN 89 (94)
T ss_dssp TSCTTCEEE-ETTS
T ss_pred hcCCCCEEE-CCCC
Confidence 578999999 4433
|
| >d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.66 E-value=1.1e-08 Score=92.32 Aligned_cols=59 Identities=32% Similarity=0.495 Sum_probs=57.1
Q ss_pred HHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCc
Q psy11896 875 LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 933 (1043)
Q Consensus 875 ~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 933 (1043)
.+-.|++.++..|||++.||.||+|+|.++++|++||++.+|..|+..||++|+.+|+|
T Consensus 57 ave~gv~~a~~~G~l~GyPv~dvkv~L~dg~~h~~dSse~AF~~Aa~~A~reA~~~A~P 115 (115)
T d2dy1a3 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHP 115 (115)
T ss_dssp HHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHhhcccccCCceeeeEEEEEEeecccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999987
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=1.5e-08 Score=113.64 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=105.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhh-----hcCCccccceEEEEecCeeEEEEeCCCCcchH---HH--HHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELER-----QRGITIQSAATYTLWKDHNINIIDTPGHVDFT---VE--VERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~-----~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~---~~--~~~~~ 71 (1043)
.+++.++ |.+++||+|..-+.......++. ..++|++..... ..++.++.||||||+.... .. ....+
T Consensus 56 ~l~Iai~-G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~ 133 (400)
T d1tq4a_ 56 VLNVAVT-GETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 133 (400)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence 3456677 99999999886555443322222 234666654433 2345579999999987421 11 12235
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC----------CCCHHHHHHHHHHhhhhccccccccC
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----------GADPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~----------~~~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
..+|++|++.|.+ +..++..++..+...++|+++|+||+|.. ..+.++.++.+++.+...+...+
T Consensus 134 ~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~--- 208 (400)
T d1tq4a_ 134 YEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG--- 208 (400)
T ss_dssp GGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT---
T ss_pred hcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC---
Confidence 6788888887754 78888899999999999999999999952 11344556666655443333222
Q ss_pred CCCccceeeeeeeecc--cCCcchHHHHHHhhccc
Q psy11896 142 HKPIEYIRNIGISAHI--DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~--g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++.+|+.. ..|+++|.+.+...+++
T Consensus 209 ---~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 209 ---IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp ---CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred ---CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 3345678888754 45889999999887764
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.60 E-value=7.6e-08 Score=84.24 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEE--EccC---
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV--- 572 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~gl--- 572 (1043)
++||++.|..++..++ |++..|||.+|+++.||++.+.+.+...+|.+|.. ...++++|.|||.++ |.|+
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v~l~l~~i~~~ 78 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET----HHTKMDKAEPGDNIGFNVRGVEKK 78 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEE----TTEEESEECTTCEEEEEEESSCGG
T ss_pred CcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCCceEEEEEEEe----cCCccCEEeCCCcEEEEEEcCcHH
Confidence 5899999999999877 99999999999999999999999999999999883 456789999999996 5666
Q ss_pred ccccCcEEecCCCCc
Q psy11896 573 DCASGDTFVTDKNNS 587 (1043)
Q Consensus 573 ~~~~Gdtl~~~~~~~ 587 (1043)
++..|+.|+ +++++
T Consensus 79 ~i~rG~vl~-~~~~~ 92 (95)
T d1jnya1 79 DIKRGDVVG-HPNNP 92 (95)
T ss_dssp GCCTTCEEE-CTTSC
T ss_pred hcCCCCEEE-CCCcc
Confidence 678999999 55443
|
| >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Elongation factor G (EF-G), domain IV species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=3.6e-08 Score=90.02 Aligned_cols=59 Identities=32% Similarity=0.475 Sum_probs=57.1
Q ss_pred HHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCc
Q psy11896 875 LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 933 (1043)
Q Consensus 875 ~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 933 (1043)
.+-.||+.+|.+|||.+.|+.||+|+|.++.+|++||++++|..|+..|+++|+++|+|
T Consensus 63 ave~g~~~a~~~G~l~G~pv~dv~v~l~~g~~h~~dSs~~af~~Aa~~A~~~A~~kA~P 121 (121)
T d2bv3a3 63 AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 121 (121)
T ss_dssp HHHHHHHHHTTSCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCcCCCEeEEEEEEEEEEEccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999988
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=1.6e-07 Score=82.81 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEec---CCCcEEEeceEEEeccCCeeecCeecCCCEEEE--c
Q psy11896 497 DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNV---RTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--F 570 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~---~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~ 570 (1043)
+.++||++.|..+|..++ |++..|||.+|+++.||.+.+. ..+...+|.+|. .+..++++|.|||-+++ .
T Consensus 4 ~~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~----~~~~~~~~a~aG~~v~l~l~ 79 (100)
T d2c78a1 4 DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVE----MHRKTLQEGIAGDNVGVLLR 79 (100)
T ss_dssp CCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEE----ETTEEESEEETTCEEEEEES
T ss_pred CCCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEE----ECCccccEEeCCCeEEEEEc
Confidence 368899999999999887 9999999999999999999987 456677888887 44568899999999984 6
Q ss_pred cC---ccccCcEEe
Q psy11896 571 GV---DCASGDTFV 581 (1043)
Q Consensus 571 gl---~~~~Gdtl~ 581 (1043)
|+ ++..|+.|+
T Consensus 80 gi~~~~i~rG~vl~ 93 (100)
T d2c78a1 80 GVSREEVERGQVLA 93 (100)
T ss_dssp SCCTTTCCTTCEEE
T ss_pred CCCHHHccCcCEEE
Confidence 76 677899999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4.1e-08 Score=106.35 Aligned_cols=127 Identities=21% Similarity=0.223 Sum_probs=65.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccC----CceeeeeecCCcccc---ccccchh---hhhhcCceEeeeeEEEEe---
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTG----RISEMHEVRGKDNVG---AVMDSME---LERQRGITIQSAATYTLW--- 264 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~----~~~~~~~v~~~~~~~---~~~d~~~---~e~~~giTi~~~~~~~~~--- 264 (1043)
+...|+|.|++|+|||||+++|..... .+. .-.++...+.+ ..-|... .....+..+.+....-..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~va-vlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA-VIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE-EEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCcee-eecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 357899999999999999999974321 111 11222221111 0111111 111122222222211111
Q ss_pred -------------cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH--HHHHHHHhcCCCeEEEEecc
Q psy11896 265 -------------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 265 -------------~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~--~~~~~~~~~~~p~ivviNKi 329 (1043)
-++.+.||.|.|.-. .++ .....+|..++|++...|-..|.. -+++ ++=++||||+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq--~e~-~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------~aDi~VvNKa 202 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQ--SET-EVARMVDCFISLQIAGGGDDLQGIKKGLME------VADLIVINKD 202 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTT--HHH-HHHTTCSEEEEEECC------CCCCHHHHH------HCSEEEECCC
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccc--cch-hhhhccceEEEEecCCCchhhhhhchhhhc------cccEEEEEee
Confidence 257889999999643 222 355788999999988776544432 2222 3558999999
Q ss_pred CCCCC
Q psy11896 330 DRLGA 334 (1043)
Q Consensus 330 D~~~~ 334 (1043)
|+.++
T Consensus 203 D~~~~ 207 (327)
T d2p67a1 203 DGDNH 207 (327)
T ss_dssp CTTCH
T ss_pred cccch
Confidence 98753
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.49 E-value=2.2e-07 Score=81.10 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc--cC--c
Q psy11896 498 GKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV--D 573 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~ 573 (1043)
.++||++.|..++.+ .|.++.|||.||+++.||+|.+.+.+...+|..|+..+ ..++++|.|||.+++. |. +
T Consensus 6 ~~~PlR~pV~d~~kg-~G~vv~G~v~sG~i~~gd~v~i~P~~~~~~Vk~I~~~~---~~~v~~a~aGd~V~l~l~~~~~d 81 (95)
T d1r5ba1 6 VNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA---DEEISSSICGDQVRLRVRGDDSD 81 (95)
T ss_dssp HTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTT---CCEESEEETTCEEEEEEESCCTT
T ss_pred CCCCEEEEEEEEEcC-CCEEEEEEEeeCeEeCCCEEEEecCCCEEEEEEEEEEc---cccccCcCCCCEEEEEEcCcccc
Confidence 578999999888863 48999999999999999999999999999999987432 3468999999999865 53 6
Q ss_pred cccCcEEecCCCC
Q psy11896 574 CASGDTFVTDKNN 586 (1043)
Q Consensus 574 ~~~Gdtl~~~~~~ 586 (1043)
+..|+.|+ ++++
T Consensus 82 i~rG~vl~-~~~~ 93 (95)
T d1r5ba1 82 VQTGYVLT-STKN 93 (95)
T ss_dssp CCTTCEEE-CSSS
T ss_pred cCCCCEEE-cCCC
Confidence 78999999 5543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=4.3e-08 Score=100.80 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=79.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|.++|..|+|||||+.+|..... -.|+......+.+++..+.++|++|+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~---------------------------~pTiG~~~~~~~~~~~~~~~~D~~Gq~ 58 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV---------------------------VLTSGIFETKFQVDKVNFHMFDVGGQR 58 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC---------------------------CCCCSCEEEEEEETTEEEEEEECCCST
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc---------------------------CCCCCeEEEEEEECcEEEEEEecCccc
Confidence 46899999999999999999852110 012333344577899999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcc-----------hHHHHHHHHHH----hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQ-----------SQTLTVNRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~-----------~~t~~~~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.+........+.++++++++|..+-.. ......|.... -.++|+++++||+|+.
T Consensus 59 ~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp TTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred eeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 998888889999999999999874211 12223333322 2468999999999975
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=3.2e-07 Score=79.30 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=66.9
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC-
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV- 572 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl- 572 (1043)
+.||+++|..+|..++ |+++.++|.+|++++||+|.+.+. ..+.+|..|. .+..++++|.|||.+++ .|+
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~----~~~~~~~~a~aG~~v~l~L~gi~ 78 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVE----MFRKLLDEGRAGENVGVLLRGIK 78 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEE----ETTEEESEEETTCEEEEEETTCC
T ss_pred CCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEE----ECCcCccccCCCCEEEEEEcCCC
Confidence 6799999999999888 999999999999999999987543 3556788877 44678999999999985 576
Q ss_pred --ccccCcEEe
Q psy11896 573 --DCASGDTFV 581 (1043)
Q Consensus 573 --~~~~Gdtl~ 581 (1043)
+++.|+.|+
T Consensus 79 ~~~i~rG~vl~ 89 (92)
T d1efca1 79 REEIERGQVLA 89 (92)
T ss_dssp GGGCCTTCEEE
T ss_pred HHHcCCccEEe
Confidence 678899998
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.42 E-value=3.8e-07 Score=80.01 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=67.2
Q ss_pred CCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEE--cc
Q psy11896 497 DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG 571 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~g 571 (1043)
+.++||++.|..+|..++ |+++.++|.+|+++.||.+.....+ ...+|..|. .+..+++.|.|||-+++ .|
T Consensus 3 ~~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~----~~~~~~~~a~aG~~v~l~l~g 78 (98)
T d1d2ea1 3 DLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIE----MFHKSLDRAEAGDNLGALVRG 78 (98)
T ss_dssp CTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEE----ETTEEESEEETTCEEEEEESS
T ss_pred CCCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEE----EeccEeccCCCCCEEEEEEcC
Confidence 378999999999999988 9999999999999999999654333 344566666 55678999999999984 67
Q ss_pred C---ccccCcEEe
Q psy11896 572 V---DCASGDTFV 581 (1043)
Q Consensus 572 l---~~~~Gdtl~ 581 (1043)
+ ++..|+.|+
T Consensus 79 i~~~~i~rG~vl~ 91 (98)
T d1d2ea1 79 LKREDLRRGLVMA 91 (98)
T ss_dssp CCGGGCCTTCEEE
T ss_pred CCHHHccCccEEe
Confidence 7 678999999
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.34 E-value=3.7e-08 Score=85.57 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC--
Q psy11896 498 GKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-- 572 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl-- 572 (1043)
.++||++.|..+|..++ |+++.+||.+|++++||.|++.+.+.+.+|.+|. ...+++++|.|||.+++ .|+
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aGd~v~l~L~gi~~ 78 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQ----YFKESVMEAKAGDRVGMAIQGVDA 78 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBC----GGGSCBCCCCSSCCCCEECSSCCS
T ss_pred CCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCCceEEEeee----EcCceeeEeCCCCEEEEEEcCCCH
Confidence 68999999999998877 9999999999999999999999999889999986 45667899999999875 566
Q ss_pred -ccccCcEEe
Q psy11896 573 -DCASGDTFV 581 (1043)
Q Consensus 573 -~~~~Gdtl~ 581 (1043)
++..|+.|+
T Consensus 79 ~~i~rG~vl~ 88 (92)
T d1wb1a1 79 KQIYRGCILT 88 (92)
T ss_dssp SCCCSSCBCC
T ss_pred HHcCCcCEEe
Confidence 577899988
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.32 E-value=2.5e-07 Score=100.02 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=67.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhccc---CCceeeeeecCCcccc---ccccchhh---hhhcCceEeeeeEE-------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYT---GRISEMHEVRGKDNVG---AVMDSMEL---ERQRGITIQSAATY------- 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~---~~~~~~~~v~~~~~~~---~~~d~~~~---e~~~giTi~~~~~~------- 261 (1043)
+...|+|.|++|+|||||+++|.... +.---.-.++...+.+ -.-|.... ....++-+.+....
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~ 129 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 129 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence 35789999999999999999998542 1111111222221110 01121111 11122222221111
Q ss_pred ---------EEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 262 ---------TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 262 ---------~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
++.-++.+.||-|.|.-.- ++ .....+|..++|+....|-..|...- --..++=++|+||+|+.
T Consensus 130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~--e~-~~~~~~D~~v~v~~p~~GD~iQ~~k~----gilE~aDi~vvNKaD~~ 202 (323)
T d2qm8a1 130 AKTRETMLLCEAAGFDVILVETVGVGQS--ET-AVADLTDFFLVLMLPGAGDELQGIKK----GIFELADMIAVNKADDG 202 (323)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSC--HH-HHHTTSSEEEEEECSCC------CCT----THHHHCSEEEEECCSTT
T ss_pred HHHHHHHHhhccCCCCeEEEeehhhhhh--hh-hhhcccceEEEEeeccchhhhhhhhh----hHhhhhheeeEeccccc
Confidence 0113678999999995431 11 23356899999999988754443211 01123569999999987
Q ss_pred CCC
Q psy11896 333 GAD 335 (1043)
Q Consensus 333 ~~~ 335 (1043)
++.
T Consensus 203 ~~~ 205 (323)
T d2qm8a1 203 DGE 205 (323)
T ss_dssp CCH
T ss_pred cch
Confidence 543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.19 E-value=6.7e-07 Score=92.69 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=73.9
Q ss_pred eeEEEEeCCCCcchHHHHHHHhh-----hcCEEEEEEeCCCCCchhHHHHHHH-----HHhcCCCEEEEEecCCCCCCCH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTLTVNRQ-----MKRYDVPCIAFINKLDRLGADP 119 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~-----~aD~iIlVvDa~~~~~~~~~~~~~~-----l~~~~~piilvlNKiDl~~~~~ 119 (1043)
..+.++||||+.++......... ..+++++|+|+..+...+....... ......|.++++||+|+...+.
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 35999999999986655433322 3458999999987777766543322 2346789999999999986433
Q ss_pred HHHHHHHHHhhhhc---ccccc-----c------cCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 120 YRVINQMRQKTSRW---ISNES-----L------SEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 120 ~~~~~~l~~~~~~~---~~~~~-----l------~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
........+.+... ..... + .........+++|+||++|+|+++|+..+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e 239 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 239 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 22211111111000 00000 0 0000122357899999999999999988765
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.18 E-value=2.8e-06 Score=73.17 Aligned_cols=80 Identities=19% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCcEEEEEeeeecC-CccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC---cc
Q psy11896 499 KHPFIALAFKLEAGK-FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV---DC 574 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~-~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl---~~ 574 (1043)
+.+|++.|-.++... .++...|+|.+|+++.||+|.+.+.+...+|.+|+ ....++++|.||+.++|.-- ++
T Consensus 4 ~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~~~~Vk~I~----~~~~~~~~a~~G~~v~l~L~~~~di 79 (92)
T d1zunb1 4 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIV----TFEGELEQAGPGQAVTLTMEDEIDI 79 (92)
T ss_dssp SSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEE----ETTEEESEECTTCEEEEEESSCCCC
T ss_pred CCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCceEEEeEEE----EcCcccCEEcCCCEEEEEEcCcccc
Confidence 457888665555433 36788999999999999999999999999999998 33457889999999987532 77
Q ss_pred ccCcEEec
Q psy11896 575 ASGDTFVT 582 (1043)
Q Consensus 575 ~~Gdtl~~ 582 (1043)
..||+|+.
T Consensus 80 ~RGdvl~~ 87 (92)
T d1zunb1 80 SRGDLLVH 87 (92)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEec
Confidence 88999993
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.16 E-value=3.3e-06 Score=76.62 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCCCcEEEEEeeeecCC---------ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEEEeccCCe
Q psy11896 497 DGKHPFIALAFKLEAGKF---------GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEM 555 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~---------G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~~~~g~~~ 555 (1043)
+.+.|++++|..++.... |.+..++|.+|+|+.||+|.+.+.++ +.+|.+|. ...
T Consensus 4 ~~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~----~~~ 79 (121)
T d1kk1a1 4 DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ----AGG 79 (121)
T ss_dssp CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE----ETT
T ss_pred CCCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEE----ECC
Confidence 368899999999987533 55999999999999999999877543 24677776 445
Q ss_pred eecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 556 EDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 556 ~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
.++++|.||+.+++. ++ |+..|++|+
T Consensus 80 ~~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~ 113 (121)
T d1kk1a1 80 QFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 113 (121)
T ss_dssp EEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred CCcCEEeCCCeEEEEecccCCcchhHhcceeEEE
Confidence 679999999998864 44 567899998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.14 E-value=3.9e-06 Score=90.31 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=45.0
Q ss_pred eeEEEEcCCCCCCc-------------hHHHHHHhHhcCeEEE-EEeCCCCcc-hHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 267 HNINIIDTPGHVDF-------------TVEVERALRVLDGAIL-VLCAVGGVQ-SQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 267 ~~i~liDtPG~~df-------------~~e~~~~l~~~D~~il-Vvda~~g~~-~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
..+.||||||.... ...+..++..++.+++ |+++..... ..+..+.+.+...+.++++|+||+|.
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~ 210 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEecccc
Confidence 57999999997532 2335566788887655 456654443 33455556665566789999999998
Q ss_pred CC
Q psy11896 332 LG 333 (1043)
Q Consensus 332 ~~ 333 (1043)
..
T Consensus 211 ~~ 212 (306)
T d1jwyb_ 211 MD 212 (306)
T ss_dssp SC
T ss_pred cc
Confidence 74
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.11 E-value=1.7e-06 Score=90.63 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=79.2
Q ss_pred ccceeeeeecccccccCCccccC-CChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHh--h
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVM-DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERAL--R 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~-d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~--~ 72 (1043)
.++.++ |..++||+|..-+-+. +.+.....+++|++.......+++.++++|||||+.+ ....+.... .
T Consensus 33 l~I~Lv-G~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~ 111 (257)
T d1h65a_ 33 LTILVM-GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDK 111 (257)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred cEEEEE-CCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcC
Confidence 355666 9999999887544433 2234445689999999999999999999999999863 222222222 3
Q ss_pred hcCEEEEEEeCCC-CCchhHHHHHHHHHh-----cCCCEEEEEecCCCCC
Q psy11896 73 VLDGAILVLCAVG-GVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 116 (1043)
Q Consensus 73 ~aD~iIlVvDa~~-~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~ 116 (1043)
..|+++||+++.. .++..+...+..+.. ...++++|+||+|...
T Consensus 112 ~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 112 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp EECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 4678999998765 366666666655543 2357999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.10 E-value=5.7e-06 Score=88.58 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=45.5
Q ss_pred eeEEEEcCCCCCC--------c-----hHHHHHHhHhcCeE-EEEEeCCCCcchH-HHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 267 HNINIIDTPGHVD--------F-----TVEVERALRVLDGA-ILVLCAVGGVQSQ-TLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 267 ~~i~liDtPG~~d--------f-----~~e~~~~l~~~D~~-ilVvda~~g~~~~-t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
..+.|+||||... . ...+..++...+.+ ++|.++......+ ...+.+.+...+.+.++|+||+|+
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~ 204 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEecccc
Confidence 4699999999632 1 13345556666654 5667776555444 345566666677899999999999
Q ss_pred CC
Q psy11896 332 LG 333 (1043)
Q Consensus 332 ~~ 333 (1043)
..
T Consensus 205 ~~ 206 (299)
T d2akab1 205 MD 206 (299)
T ss_dssp SC
T ss_pred cc
Confidence 74
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.08 E-value=6.5e-06 Score=74.27 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=64.8
Q ss_pred CCCCCcEEEEEeeeecCC---------ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEEEeccCCe
Q psy11896 497 DGKHPFIALAFKLEAGKF---------GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEM 555 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~---------G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~~~~g~~~ 555 (1043)
+++.|++++|.+.|.... |.+..++|.||+|+.||+|.+.+.++ +.+|.+|. ...
T Consensus 2 ~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~----~~~ 77 (118)
T d1s0ua1 2 DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLA----AGN 77 (118)
T ss_dssp CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEE----ETT
T ss_pred CCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEE----ECC
Confidence 478999999999986533 45999999999999999999876542 45788888 455
Q ss_pred eecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 556 EDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 556 ~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
.++++|.||+.++|. ++ |...|++|+
T Consensus 78 ~~v~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~ 111 (118)
T d1s0ua1 78 TILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 111 (118)
T ss_dssp EEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred cccCEEeCCCEEEEEeccCCCccHHHheeeeEEe
Confidence 678999999999974 23 456788888
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.08 E-value=6.8e-07 Score=97.05 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=44.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE------------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT------------------ 262 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~------------------ 262 (1043)
.||++|.||+|||||+|+|+.....+. ..+++|++......
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~---------------------nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~ 60 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIA---------------------NYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEEECSCSSSCCSCCCS
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchh---------------------cCCCCcccCccceeeCCCCchhhhhhhccCcc
Confidence 599999999999999999985432221 12333333222111
Q ss_pred ------EecCeeEEEEcCCCCCCchH-------HHHHHhHhcCeEEEEEeCCC
Q psy11896 263 ------LWKDHNINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 263 ------~~~~~~i~liDtPG~~df~~-------e~~~~l~~~D~~ilVvda~~ 302 (1043)
.+....+.++|+||...-.. .....++.+|++++|||+..
T Consensus 61 ~~~~~~~~~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp SSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred ccccccccccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 12335799999999755322 23344589999999999973
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.01 E-value=1.3e-05 Score=68.86 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCCc-EEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC--
Q psy11896 498 GKHPF-IALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-- 572 (1043)
Q Consensus 498 ~~~p~-~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl-- 572 (1043)
...|+ +++|..+|..++|++..|+|.+|++++||.|...+. +.+|.+|. ....++++|.|||-+++ .|-
T Consensus 5 ~~kp~~R~~Id~vf~i~GgtVvtGtV~sG~i~~Gd~v~~~p~--~~~VksIq----~~~~~v~~a~~G~~v~l~L~~~~~ 78 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKVKGPSG--IGGIVRIE----RNREKVEFAIAGDRIGISIEGKIG 78 (91)
T ss_dssp CSSCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEEECSSC--EEEEEEEE----ETTEEESEEETTCEEEEEEESCCC
T ss_pred cCCCccEeeEEEEEEECCcEEEEEEEeeCCcCCCCEEEECCc--cEEEEEEE----EcceEhhhhhhcceeEEEEcCCcC
Confidence 45676 899999999988999999999999999999998763 56788887 34567899999999986 343
Q ss_pred ccccCcEEe
Q psy11896 573 DCASGDTFV 581 (1043)
Q Consensus 573 ~~~~Gdtl~ 581 (1043)
++..||.|.
T Consensus 79 di~rGdvL~ 87 (91)
T d1xe1a_ 79 KVKKGDVLE 87 (91)
T ss_dssp CCCTTCEEE
T ss_pred CcCCCCEEE
Confidence 577899887
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.01 E-value=3.1e-06 Score=90.50 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=61.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccC-CceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTG-RISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------ 266 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~-~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 266 (1043)
.+|||||.||+|||||.++|+.... .+ ...+++|++.....+...+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~---------------------anypftTi~pn~g~v~v~d~r~~~l~~~~~~ 69 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNP---------------------ANYPYATIDPEEAKVAVPDERFDWLCEAYKP 69 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTST---------------------TCCSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCc---------------------CCCCccCccCCeEEEeccccchhhhhhcccC
Confidence 4699999999999999999984321 11 2255667766665555432
Q ss_pred -----eeEEEEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCC
Q psy11896 267 -----HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 -----~~i~liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.++|.||.+. ........++.+|+.+.|||+..
T Consensus 70 ~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 70 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CceecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 4688999999653 45678889999999999999974
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.97 E-value=3.7e-06 Score=89.13 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=55.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-------------- 266 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------------- 266 (1043)
+|||||.||+|||||.++|+.....+. ..+.+|+......+...+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~---------------------~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~ 62 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAA---------------------NYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSE
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccc---------------------cCCCCCCCCceEEEecccHhHHHHHHhcCCCc
Confidence 699999999999999999985543322 233444444444333221
Q ss_pred ---eeEEEEcCCCCCCchH-------HHHHHhHhcCeEEEEEeCCC
Q psy11896 267 ---HNINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 ---~~i~liDtPG~~df~~-------e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.++|.||.+.-.+ +..+.++.||+.+.|||+..
T Consensus 63 ~~~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp EECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeeeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 2588999999766333 36788899999999999863
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.72 E-value=2.7e-06 Score=74.33 Aligned_cols=47 Identities=32% Similarity=0.469 Sum_probs=43.5
Q ss_pred cccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehh
Q psy11896 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839 (1043)
Q Consensus 793 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~ 839 (1043)
.||||+|.++|.+|++++|.|+++|++|||.+...+..++|..+.|.
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~ 47 (96)
T d2dy1a5 1 VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAE 47 (96)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEE
T ss_pred CeECcEEEEEEEECHHHHHHHHHHHHhcCCEEeeccccCCcEEEEEE
Confidence 37999999999999999999999999999999999988999888764
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=97.67 E-value=3.7e-06 Score=72.33 Aligned_cols=47 Identities=40% Similarity=0.584 Sum_probs=43.5
Q ss_pred cccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehh
Q psy11896 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839 (1043)
Q Consensus 793 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~ 839 (1043)
.||||+|.++|.+|++++|.|+++|++|||.+...+..++|..+.|.
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~ 47 (89)
T d2bv3a5 1 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF 47 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHTTTCEEEEEEEETTEEEEEEE
T ss_pred CEECcEEEEEEEECHHHHHHHHHHHHHcCCccccCCcccccEEEEEE
Confidence 37999999999999999999999999999999999988999887764
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.53 E-value=0.0001 Score=65.73 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=55.8
Q ss_pred CCCCCcEEEEEeeeecCC---------ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEEEeccCCe
Q psy11896 497 DGKHPFIALAFKLEAGKF---------GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEM 555 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~---------G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~~~~g~~~ 555 (1043)
+.+.|++++|...+.... |.+..++|.+|+|+.||+|.+.+.++ +.+|.+|+ ...
T Consensus 2 d~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~----~~~ 77 (114)
T d2qn6a1 2 DLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIR----FGD 77 (114)
T ss_dssp CTTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE----ETT
T ss_pred CCCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEE----ECC
Confidence 367889999988876422 56999999999999999999887553 25677777 445
Q ss_pred eecCeecCCCEEEEc
Q psy11896 556 EDVEEVLAGDIFALF 570 (1043)
Q Consensus 556 ~~v~~a~aGdIv~i~ 570 (1043)
.++++|.||+.++|.
T Consensus 78 ~~v~~A~aG~~V~i~ 92 (114)
T d2qn6a1 78 EEFKEAKPGGLVAIG 92 (114)
T ss_dssp EEESEECSSSCEEEE
T ss_pred cccCEEeCCCEEEEE
Confidence 678999999999973
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.28 E-value=0.00021 Score=71.27 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=64.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCce-eeeeecCC-ccccccccch-hhhhhcCceEeeeeEEE-----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRIS-EMHEVRGK-DNVGAVMDSM-ELERQRGITIQSAATYT----------- 262 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~-~~~~v~~~-~~~~~~~d~~-~~e~~~giTi~~~~~~~----------- 262 (1043)
+....|+++|++|+||||.+-+|..+...-. +.+-+.-. .+... .+.+ .....-|+.+......-
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~ 88 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAA-LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 88 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHH-HHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccch-hHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence 3446688999999999999988874432111 11111100 00000 0000 01122333332111110
Q ss_pred --EecCeeEEEEcCCCCCCch------HHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 263 --LWKDHNINIIDTPGHVDFT------VEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 263 --~~~~~~i~liDtPG~~df~------~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...++.+.||||||...+. .++.... ...+-.++|+|+..|.... ..........++ --++++|+|-.
T Consensus 89 ~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~-~~lI~TKlDet 166 (211)
T d1j8yf2 89 KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKI-GTIIITKMDGT 166 (211)
T ss_dssp HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTT-EEEEEECTTSC
T ss_pred HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchH-HHHhhhhcccCc-ceEEEecccCC
Confidence 1246789999999954332 2222222 3356789999999875433 333333333333 44669999976
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.00016 Score=72.23 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=68.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCce-eeeeecCC-ccccccccchh-hhhhcCceEeeeeEE----------
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRIS-EMHEVRGK-DNVGAVMDSME-LERQRGITIQSAATY---------- 261 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~-~~~~v~~~-~~~~~~~d~~~-~e~~~giTi~~~~~~---------- 261 (1043)
++.+...|+++|++|+||||.+-.|..+...-. +.+-+.-. .+... .+.+. .-..-|+.+......
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA-~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 85 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAA-IEQLKIWGERVGATVISHSEGADPAAVAFDA 85 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHH-HHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccch-hHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence 344456799999999999999888874321111 11111000 00000 00000 011223332211100
Q ss_pred ---EEecCeeEEEEcCCCCCCchHHHHHHh----Hh--------cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEE
Q psy11896 262 ---TLWKDHNINIIDTPGHVDFTVEVERAL----RV--------LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 326 (1043)
Q Consensus 262 ---~~~~~~~i~liDtPG~~df~~e~~~~l----~~--------~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivvi 326 (1043)
...+++.+.||||||-..+..+....+ +. .+-.++|+||..|.... ....+..... -+--+++
T Consensus 86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~-~~~~~~~~~~-~~~~lI~ 163 (213)
T d1vmaa2 86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGL-VQAKIFKEAV-NVTGIIL 163 (213)
T ss_dssp HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHH-HHHHHHHHHS-CCCEEEE
T ss_pred HHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchh-hhhhhhcccc-CCceEEE
Confidence 012367899999999666555543322 21 35689999998763222 2222222222 2456789
Q ss_pred eccCCC
Q psy11896 327 NKLDRL 332 (1043)
Q Consensus 327 NKiD~~ 332 (1043)
+|+|-.
T Consensus 164 TKlDe~ 169 (213)
T d1vmaa2 164 TKLDGT 169 (213)
T ss_dssp ECGGGC
T ss_pred ecccCC
Confidence 999975
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00036 Score=69.35 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=66.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCce-eeeeecCCc-cccccccch-hhhhhcCceEeeeeEEE-------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRIS-EMHEVRGKD-NVGAVMDSM-ELERQRGITIQSAATYT------------- 262 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~-~~~~v~~~~-~~~~~~d~~-~~e~~~giTi~~~~~~~------------- 262 (1043)
...|+++|++|+||||.+-.|..+...-. +++-+.-.. +... .+.+ ...+.-|+.+......-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA-~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a 87 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA-VEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 87 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHH-HHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccc-hhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence 35688999999999999999974432211 111111100 0000 1111 01122333332111100
Q ss_pred EecCeeEEEEcCCCCCCchHHHHHH-------hH-----hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEVERA-------LR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~~~~-------l~-----~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
..+++.+.||||||......+.... +. ..+-.++|+|+..|..... ...+.....+ +--++++|+|
T Consensus 88 ~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~~-~~~lIlTKlD 165 (211)
T d2qy9a2 88 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEAVG-LTGITLTKLD 165 (211)
T ss_dssp HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHH-HHHHHHHHSC-CCEEEEECCT
T ss_pred HHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHH-HHhhhhhccC-CceEEEeecC
Confidence 0135789999999954443332222 22 1357899999998643332 2223222233 4567899999
Q ss_pred CC
Q psy11896 331 RL 332 (1043)
Q Consensus 331 ~~ 332 (1043)
-.
T Consensus 166 e~ 167 (211)
T d2qy9a2 166 GT 167 (211)
T ss_dssp TC
T ss_pred CC
Confidence 75
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.12 E-value=0.00033 Score=69.58 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=66.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCcee-eeeecCCc-cccccccch-hhhhhcCceEeeeeEE-------------EE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISE-MHEVRGKD-NVGAVMDSM-ELERQRGITIQSAATY-------------TL 263 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~-~~~v~~~~-~~~~~~d~~-~~e~~~giTi~~~~~~-------------~~ 263 (1043)
+.|+++|++|+||||.+-.|..+.....+ ++-+.-.. +... .+.+ .....-|+.+...... ..
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA-~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~ 85 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG-GTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMK 85 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTH-HHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccc-hhhHhhcccccCceEEeccCCccHHHHHHHHHHHHH
Confidence 56899999999999999888744322111 11111000 0000 0000 0111223322211100 01
Q ss_pred ecCeeEEEEcCCCCCCchHHH----HHH---hH-----hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEV----ERA---LR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~----~~~---l~-----~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
.+++.+.||||||-..+..+. ... .. ..+-.++|+||..|.. ......+.....++ --++++|+|-
T Consensus 86 ~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~-~~lI~TKlDe 163 (207)
T d1okkd2 86 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEAVGL-TGVIVTKLDG 163 (207)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHHHCC-SEEEEECTTS
T ss_pred HCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch-HHHHHHHhhhccCC-ceEEEeccCC
Confidence 136789999999965443332 222 21 2366899999998753 33333333333343 3568999997
Q ss_pred C
Q psy11896 332 L 332 (1043)
Q Consensus 332 ~ 332 (1043)
.
T Consensus 164 t 164 (207)
T d1okkd2 164 T 164 (207)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00065 Score=68.57 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=72.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCc---eEeeeeEEEEe----------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGI---TIQSAATYTLW---------- 264 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~gi---Ti~~~~~~~~~---------- 264 (1043)
+|+-..|.|..|||||||+++|+...... +..-+.+..... -.|.... ...+. .+.........
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~-riaVI~Ne~g~~-~iD~~~~-~~~~~~~~el~~gcicc~~~~~~~~~l~~ 78 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGY-KIAVIENEFGEV-SVDDQLI-GDRATQIKTLTNGCICCSRSNELEDALLD 78 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCC-CEEEECSSCCSC-CEEEEEE-CTTSCEEEEETTSCEEECTTSCHHHHHHH
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCCCC-cEEEEEecccch-hhhhhhh-cccccceEEecCCcceeccchhHHHHHHH
Confidence 57778899999999999999999653211 222121110000 0000000 00010 11111111110
Q ss_pred ---------cCeeEEEEcCCCCCCchHHHH--------HHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEe
Q psy11896 265 ---------KDHNINIIDTPGHVDFTVEVE--------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFIN 327 (1043)
Q Consensus 265 ---------~~~~i~liDtPG~~df~~e~~--------~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviN 327 (1043)
......+|-|.|-.+-..-+. ...-..|++|.|||+..+....... -....+...-=++++|
T Consensus 79 ~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~-~~~~~Qi~~AD~ivlN 157 (222)
T d1nija1 79 LLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLT 157 (222)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHC-HHHHHHHHTCSEEEEE
T ss_pred HHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhh-HHHHHHHHhCCccccc
Confidence 023568899999876433321 1122458899999998754322211 1111122335579999
Q ss_pred ccCCCCCCHHHHHHHHHHHhCC
Q psy11896 328 KLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 328 KiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
|+|+.. +.+. +.+..+.++.
T Consensus 158 K~Dl~~-~~~~-~~~~l~~lNP 177 (222)
T d1nija1 158 KTDVAG-EAEK-LHERLARINA 177 (222)
T ss_dssp CTTTCS-CTHH-HHHHHHHHCS
T ss_pred cccccc-HHHH-HHHHHHHHhC
Confidence 999975 3333 3333444543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.01 E-value=0.0006 Score=72.23 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=47.5
Q ss_pred eEEEEeCCCCcc-------------hHHHHHHHhhhcCE-EEEEEeCCCCCchhH-HHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 51 NINIIDTPGHVD-------------FTVEVERALRVLDG-AILVLCAVGGVQSQT-LTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 51 ~i~liDTPG~~~-------------~~~~~~~~~~~aD~-iIlVvDa~~~~~~~~-~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.+.|+||||... ....+..++...+. +++|.++...+.... ..+.+.+...+.++++|+||+|+.
T Consensus 126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~ 205 (299)
T d2akab1 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM 205 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS
T ss_pred CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccccc
Confidence 489999999852 23556677777774 556777776555544 345556666678899999999987
Q ss_pred CC
Q psy11896 116 GA 117 (1043)
Q Consensus 116 ~~ 117 (1043)
..
T Consensus 206 ~~ 207 (299)
T d2akab1 206 DE 207 (299)
T ss_dssp CT
T ss_pred cc
Confidence 53
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.93 E-value=0.0016 Score=59.15 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred ccEEEE-EEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC----ccccCcEEec
Q psy11896 515 GQLTYM-RCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV----DCASGDTFVT 582 (1043)
Q Consensus 515 G~i~~~-RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl----~~~~Gdtl~~ 582 (1043)
+.+.++ ||.+|+|++||.|.+.+.+...+|.+|. .+.+++++|.+|+-|+| .|. +...||.|++
T Consensus 19 ~p~ivgv~V~sG~ik~G~~l~~~p~~~~g~VksIq----~~~~~v~~A~~G~~Vai~I~g~~~gr~i~~gD~L~s 89 (128)
T d1g7sa2 19 KPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQ----DKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYV 89 (128)
T ss_dssp SSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEE----ETTEEESEEETTCCEEEEEETCCBTTTBCTTCEEEE
T ss_pred CCeEEEEEEeeeeecCCCEEEECCCCceEEEEEEE----ECCccccEEcCCCEEEEEEcCcccCCCCCCCCEEEE
Confidence 445555 9999999999999999888888888886 44578999999999985 454 4678999984
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.90 E-value=0.00044 Score=68.79 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=40.1
Q ss_pred cCeeEEEEcCCCCCCchHHHHHH------hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERA------LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~------l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.++.+.||||||......+.... ....|-.++|+|+..|..... .........+ .-=++++|+|-.
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~~-~~~~I~TKlDe~ 162 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VARAFDEKVG-VTGLVLTKLDGD 162 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HHHHHHHHTC-CCEEEEECGGGC
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH-HHHHHHhhCC-CCeeEEeecCcc
Confidence 46789999999954443333222 245578899999987643322 2222222233 345789999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.87 E-value=0.00017 Score=75.79 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=65.3
Q ss_pred CCccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-----------------eEEEEeCCCCcc-
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-----------------NINIIDTPGHVD- 62 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-----------------~i~liDTPG~~~- 62 (1043)
|.+|+=|| |.+.+||+|++-+.+...-+...-|.+|++++.+.+...+. .+.++|.||...
T Consensus 1 m~~~~Giv-G~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g 79 (278)
T d1jala1 1 MGFKCGIV-GLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (278)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence 67899999 99999999998766666666778899999999999876542 588999999864
Q ss_pred ------hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 63 ------FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 63 ------~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+....++.++.+|++++|||+..
T Consensus 80 a~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccCCCccHHHHHHHHhccceEEEeeccC
Confidence 33457899999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.71 E-value=0.0013 Score=69.77 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=46.6
Q ss_pred eEEEEeCCCCcc-------------hHHHHHHHhhhcCEEEE-EEeCCCCCch-hHHHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 51 NINIIDTPGHVD-------------FTVEVERALRVLDGAIL-VLCAVGGVQS-QTLTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 51 ~i~liDTPG~~~-------------~~~~~~~~~~~aD~iIl-VvDa~~~~~~-~~~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.+.|+||||+.. ....+..++..++.+++ |+++...... ....+.+.+...+.++++|+||+|..
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~ 211 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM 211 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccc
Confidence 599999999853 33557778889997555 5566644433 34445555555567899999999986
Q ss_pred CC
Q psy11896 116 GA 117 (1043)
Q Consensus 116 ~~ 117 (1043)
..
T Consensus 212 ~~ 213 (306)
T d1jwyb_ 212 DK 213 (306)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00029 Score=63.39 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=35.8
Q ss_pred ccceeeccccccccccchhhhhhcccceecccCCC--CCceeeeh
Q psy11896 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK--DDWVTIYA 838 (1043)
Q Consensus 796 EP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~--~~~~~~~~ 838 (1043)
||+|.++|.||++++|.|+++|++|||.+..++.. +.+..+.|
T Consensus 1 EPi~~v~I~~p~e~~G~V~~~l~~rRG~i~~~~~~~~~~~~~i~a 45 (117)
T d1n0ua5 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKA 45 (117)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEE
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHcCCeEeeeeecCCCceEEEEE
Confidence 89999999999999999999999999998876544 44555544
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.49 E-value=0.00078 Score=71.25 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=67.1
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcc--
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVD-- 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~-- 62 (1043)
.|+=|| |.+.+||+|++-+.+.... ....-|+||++++.+.+...+ ..+.++|.||...
T Consensus 11 ~kiGiv-G~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 11 LKTGIV-GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CEEEEE-ECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence 467788 9999999999766664332 456789999999999988654 3699999999863
Q ss_pred -----hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 63 -----FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 63 -----~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+.......++.+|++++|+|+..
T Consensus 90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 90 STGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccHHHHHHHhhccceeEEEEeccC
Confidence 55788999999999999999864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.32 E-value=0.00035 Score=74.91 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=46.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE------------------------ecCeeEEEEeCCC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL------------------------WKDHNINIIDTPG 59 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~------------------------~~~~~i~liDTPG 59 (1043)
|+-|| |.+.+||+|.+-+.+.-......-|.||++++.+... +...++.++|+||
T Consensus 2 ~v~lv-G~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 2 EIGVV-GKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp EEEEE-ECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred cEeEE-CCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 67788 9999999999777666666666779999999887643 1224699999999
Q ss_pred Ccc-------hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 60 HVD-------FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 60 ~~~-------~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
... +.......++.+|++++|||+..
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 864 33445567789999999999874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0034 Score=66.84 Aligned_cols=110 Identities=19% Similarity=0.089 Sum_probs=63.0
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhH--HHHHHHHHhcCCCEEEEEecCCCCCCCHH-HHHHH
Q psy11896 49 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLGADPY-RVINQ 125 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~--~~~~~~l~~~~~piilvlNKiDl~~~~~~-~~~~~ 125 (1043)
++.+.|+.|.|...-.. .....+|.+++|++...|-..|. .-+.+ ++=++|+||+|+...+.. .....
T Consensus 146 g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------~aDi~VvNKaD~~~~~~~~~~~~~ 216 (327)
T d2p67a1 146 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLME------VADLIVINKDDGDNHTNVAIARHM 216 (327)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHH------HCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhc------cccEEEEEeecccchHHHHHHHHH
Confidence 34577777777654222 35567899999998764322221 11211 345799999998753221 11222
Q ss_pred HHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 126 MRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+...+.. +........++++.+||.+|+|+++|.+.|..+..
T Consensus 217 ~~~al~~------~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 217 YESALHI------LRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp HHHHHHH------SCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhhh------cccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 2222210 11112223367999999999999999999977654
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.21 E-value=0.023 Score=48.35 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEe--------ccCCeeecCeecCCCEE
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRL--------HSNEMEDVEEVLAGDIF 567 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~--------~g~~~~~v~~a~aGdIv 567 (1043)
++|..+.|.....+++ |.++.+-|++|+|+.||.+....... ..+|..|+.+ ..++.+.++++.|..-+
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence 5788899998888888 99999999999999999999876543 3467777764 35567889999998888
Q ss_pred EEc--cC-ccccCcEEe
Q psy11896 568 ALF--GV-DCASGDTFV 581 (1043)
Q Consensus 568 ~i~--gl-~~~~Gdtl~ 581 (1043)
-|. || ++-.|+.|.
T Consensus 82 kI~a~gLe~v~aG~~~~ 98 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLR 98 (101)
T ss_dssp EEECSSCTTBCTTCEEE
T ss_pred EEEcCCCCcCCCCCEEE
Confidence 776 67 555787764
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.07 E-value=0.0039 Score=62.85 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=55.4
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGAD 335 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~ 335 (1043)
.+.+.++|||+.. ...+..++..+|.+++++.....-..++....+.+.+.++|++ +++||.|+...+
T Consensus 111 ~~d~IiiD~~~~~--~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 111 KFDFILIDCPAGL--QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GCSEEEEECCSSS--SHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC
T ss_pred cCCEEEEcccccc--cccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccccch
Confidence 4789999999864 4567778899999999999876556677778888888999976 889999876443
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.99 E-value=0.0032 Score=63.34 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=57.4
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMR 344 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~ 344 (1043)
.+.+.++|||+... ......+..+|.+++|+.....-..........+.+.+.+.+ +++||.+.. ..+...+.+.
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~--~~~~~~~~i~ 184 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL--GIEMAKNEIE 184 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT--THHHHHHHHH
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccccchhhhhhhhhhhhhcccccccccccccccc--cccchhhhHH
Confidence 57899999999764 456667889999999998764333444455566667787755 788998754 2344556777
Q ss_pred HHhCCCc
Q psy11896 345 QKVGHNA 351 (1043)
Q Consensus 345 ~~l~~~~ 351 (1043)
+.++..+
T Consensus 185 ~~~~~~~ 191 (232)
T d1hyqa_ 185 AILEAKV 191 (232)
T ss_dssp HHTTSCE
T ss_pred hhcCCeE
Confidence 7777543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.88 E-value=0.0042 Score=66.00 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=65.8
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHH
Q psy11896 49 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~ 128 (1043)
++.+.|+-|.|...-... ....+|..++|+....|-..|... .....++=++|+||+|+.+... .......
T Consensus 143 g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k----~gilE~aDi~vvNKaD~~~~~~--~~~~~~~ 213 (323)
T d2qm8a1 143 GFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK----KGIFELADMIAVNKADDGDGER--RASAAAS 213 (323)
T ss_dssp TCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC----TTHHHHCSEEEEECCSTTCCHH--HHHHHHH
T ss_pred CCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhh----hhHhhhhheeeEeccccccchH--HHHHHHH
Confidence 567888888887653333 334589999999977542222110 0011234589999999875432 2122221
Q ss_pred hhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 129 KTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+...+.. +.........+++.+||++|.|+++|.+.+..+...
T Consensus 214 ~~~~~l~~--~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~ 257 (323)
T d2qm8a1 214 EYRAALHI--LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 257 (323)
T ss_dssp HHHHHHTT--BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhc--ccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 11111110 111122234679999999999999999999876653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.014 Score=58.06 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=33.8
Q ss_pred HhcCeEEEEEeCCCC-cc-hHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 289 RVLDGAILVLCAVGG-VQ-SQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 289 ~~~D~~ilVvda~~g-~~-~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
...|.+++|+.+.+. .. ....+.+-.+...++|.++|+||+|+..
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~ 55 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 55 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCC
Confidence 467889999987753 32 2234456667889999999999999974
|
| >d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: YigZ C-terminal domain-like domain: Hypothetical protein YigZ, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0078 Score=48.40 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=60.8
Q ss_pred ceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEE
Q psy11896 938 PIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003 (1043)
Q Consensus 938 P~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~ 1003 (1043)
||-.+.++|+...+|+|-..|.+..+.|.+.+..+. .++...+|..+.=.|...|+.+|+|++.+
T Consensus 1 P~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~~~-V~l~v~vp~~~~~~f~~~l~d~t~G~v~~ 65 (71)
T d1vi7a2 1 PLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQAF-VLLRVALPAAKVAEFSAKLADFSRGSLQL 65 (71)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESSS-EEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred CceEEEEEeccccHHHHHHHHHHCCCEEEeeeeccE-EEEEEEECHHHHHHHHHHHHHhCCCcEEE
Confidence 899999999999999999999999999999999654 88999999999999999999999999854
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=95.18 E-value=0.011 Score=61.32 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=49.0
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~ 348 (1043)
..++...+..+|.++.|+||..+.......+.+... ++|+++|+||+|+... +..++..+.+.
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~---~~~~~w~~~f~ 68 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA---AVTQQWKEHFE 68 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch---HHHHHHHHHHH
Confidence 456777899999999999999999988887777663 7899999999999743 33444444443
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.85 E-value=0.006 Score=60.17 Aligned_cols=43 Identities=9% Similarity=-0.029 Sum_probs=33.1
Q ss_pred hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 288 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 288 l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
+...++.++++|+......+-......+...+.+.+++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 3455677889999987766666777778888888888888776
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.013 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcc
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
++.++|+|++|||||||+++|+..
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999853
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=94.11 E-value=0.044 Score=56.12 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=49.9
Q ss_pred CeeEEEEcCCCCCC-chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHH----hcCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK----RYDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~d-f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~----~~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.++|||+... .......+...+|.+++++++............+... ..+.+. -+++|+.+... ..+.
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~--~~~~ 192 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC--ccch
Confidence 47899999998543 2333445557789998888775321122222222222 233333 37889987653 3467
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
++++.+.++...
T Consensus 193 ~~~~~~~~~~~~ 204 (269)
T d1cp2a_ 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred hhhhHhhcCCeE
Confidence 788888887644
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.59 E-value=0.12 Score=43.73 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=58.1
Q ss_pred EEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcE---EEeceEEEeccCCeeecCeecCCCEEEEc--cC-cccc
Q psy11896 504 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV-DCAS 576 (1043)
Q Consensus 504 ~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~---~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~ 576 (1043)
|.|-+++.... |.+|=+||.+|.++.+..+.+.+.+.. -+|.+|. +...+|+++..|.=|+|. +. +...
T Consensus 9 A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk----~~K~~V~eV~~G~ECGi~l~~~~d~~~ 84 (99)
T d1d1na_ 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeec----ccccccCEecCCeEEEEEecCccCCCC
Confidence 34445554434 899999999999999999999987754 3677776 667789999999999874 33 7788
Q ss_pred CcEEe
Q psy11896 577 GDTFV 581 (1043)
Q Consensus 577 Gdtl~ 581 (1043)
||+|-
T Consensus 85 GD~ie 89 (99)
T d1d1na_ 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.011 Score=56.57 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
..++|+|.|++|+|||||+.+|....+
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 358999999999999999999986544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.092 Score=51.40 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred CeeEEEEcCCCCCCc-----hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDF-----TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df-----~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.++|+|+.... ...........+.+++|++...+....+....+.+...+.+. -+++|+.|.......+.
T Consensus 108 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~ 187 (224)
T d1byia_ 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEY 187 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHH
T ss_pred ccceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcCCCchHHHHH
Confidence 467899999875431 111122224456778888888877777777777777777765 47889999877777788
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
++.+.+.++...
T Consensus 188 ~~~l~~~~gi~v 199 (224)
T d1byia_ 188 MTTLTRMIPAPL 199 (224)
T ss_dssp HHHHHHHSSSCE
T ss_pred HHHHHHHhCCCE
Confidence 899999888654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.57 E-value=0.061 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+-++|+|..|||||||+++|+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999843
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.049 Score=56.05 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=49.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
++.-|+|+|+..+|||||+|.|+........ ..+ -.....|+-+..... ....+..+.++||.|.
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~----~~~----------~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL----GST----------VQSHTKGIWMWCVPH-PKKPGHILVLLDTEGL 95 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC----CCS----------SSCCCCSEEEEEEEC-SSSTTCEEEEEEECCB
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCcc----CCC----------CCCCCCceEEEEeec-cCCCCceEEEEecccc
Confidence 4778999999999999999999854322111 000 011233443322111 1224568999999996
Q ss_pred CC-----ch-HH--HHHHhHhcCeEEEEEeC
Q psy11896 278 VD-----FT-VE--VERALRVLDGAILVLCA 300 (1043)
Q Consensus 278 ~d-----f~-~e--~~~~l~~~D~~ilVvda 300 (1043)
.+ .. .. ..-++-.++..|+=+..
T Consensus 96 ~~~~~~~~~~~~~i~~l~~llSs~~i~N~~~ 126 (277)
T d1f5na2 96 GDVEKGDNQNDSWIFALAVLLSSTFVYNSIG 126 (277)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHCSEEEEEEES
T ss_pred cccccccchhHHHHHHHHHHHhCEEEEeccc
Confidence 43 11 11 22344567776665544
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.70 E-value=0.064 Score=50.96 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=50.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.-|.++|.+||||||++..|+...+...- -.|.. . . ...
T Consensus 15 ~liil~G~pGsGKST~a~~l~~~~~~~~i------------~~D~~----~---------------~----------~~~ 53 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV------------NRDTL----G---------------S----------WQR 53 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTGGGTCEEE------------EHHHH----C---------------S----------HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCCEEE------------chHHH----H---------------H----------HHH
Confidence 45889999999999999999644332110 00100 0 0 001
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEE
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 326 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivvi 326 (1043)
....+..++.. +..+|+|+......+-......+...+.++.++.
T Consensus 54 ~~~~~~~~l~~--g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~ 98 (172)
T d1yj5a2 54 CVSSCQAALRQ--GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFN 98 (172)
T ss_dssp HHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHC--CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 12233444433 4456789887666666666778888888876665
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.07 E-value=0.033 Score=55.35 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=34.3
Q ss_pred HhcCeEEEEEeCCCC-cc-hHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 289 RVLDGAILVLCAVGG-VQ-SQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 289 ~~~D~~ilVvda~~g-~~-~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
...|.+++|+++.+. .. ......+-.+...+++.++|+||+|+..
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~ 55 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 55 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccc
Confidence 567889999998753 32 3344556677889999999999999975
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.04 E-value=0.026 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
..+|+++|++||||||++..|....+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence 46799999999999999999975443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.93 E-value=0.067 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
+||.|.|.+|||||||+++|+..-.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEeeccccchHHHHHHhhhcc
Confidence 6899999999999999999985543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=90.92 E-value=0.032 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEEEeecCCcccHHhHHhccc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
+|+|+|++|+|||||+..++...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcC
Confidence 59999999999999999998543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.22 E-value=0.053 Score=52.51 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=25.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
.+.++..|+|+|++||||||++..|....+.
T Consensus 4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455778999999999999999999866554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.05 E-value=0.055 Score=52.25 Aligned_cols=29 Identities=21% Similarity=0.074 Sum_probs=23.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCc
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRI 226 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~ 226 (1043)
+...|+|+|++||||||++..|....+..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~ 33 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 34678999999999999999998665543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.69 E-value=0.047 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
++|.++|++|+||||+...|....+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975543
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=89.67 E-value=0.097 Score=54.06 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=47.3
Q ss_pred CeeEEEEcCCCCCCc-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH----HhcCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDF-TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM----KRYDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~----~~~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.++|||+...- ......+...+|.+++++....--........+.. ...++++ -+++|+.+.. ...+.
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~--~~~~~ 195 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch--hhHHH
Confidence 578999999986532 22233334577888877765521111122222222 1223343 3788997654 34567
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
++++.+.++...
T Consensus 196 ~~~~~~~~g~~v 207 (289)
T d2afhe1 196 IIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHTSCE
T ss_pred HHHHHHHcCCeE
Confidence 788888887643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.23 E-value=0.05 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
+||+++|++||||||+...|....+.
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~ 26 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDL 26 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999755543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=89.18 E-value=0.052 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.1
Q ss_pred eeEEEEEeecCCcccHHhHHhccc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
.+|++.|++||||||+++.|....
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=0.057 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
|+|.|.|++|+|||||+..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999844
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=88.36 E-value=0.072 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.0
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-|.+.|.+|||||||+..|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3778999999999999998643
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=87.78 E-value=0.078 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.6
Q ss_pred eeEEEEEeecCCcccHHhHHhccc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
+-|.|.|++||||||++..|....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999997543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.94 E-value=0.09 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
||+|+|++||||||++..|...-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999998755443
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.84 E-value=0.12 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.-|||.|++|||||||++.|...
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999743
|
| >d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: Hypothetical protein AF0491, C-terminal domain domain: Hypothetical protein AF0491, C-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.74 E-value=0.57 Score=36.83 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=51.1
Q ss_pred EEEEEEecCcchhhhhhHhhccCeEEecccc-CCCcEEEEEEechhhhcCchHHHHhhcCCceE
Q psy11896 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEG-KDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGE 1002 (1043)
Q Consensus 940 ~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~-~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~ 1002 (1043)
.++.|.+|.++.|++|+.|.+- |.|..++= .+|.....-.+|.-=--.|-+.|.++|+|.|.
T Consensus 9 ~~lavkIP~~~~gka~~~l~~~-g~i~kEeW~~DGSw~~vveiPaG~q~e~~~~ln~~t~G~ae 71 (73)
T d1t95a3 9 MEIAIKIPPEHTGRAISALYNF-GGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEAL 71 (73)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCE
T ss_pred EEEEEEECHHHHHHHHHHHHHh-CcchhhcccCCCcEEEEEEecccchHHHHHHHhhhcCCcee
Confidence 4788999999999999999876 66777764 56655666699998777788999999999985
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.53 E-value=0.11 Score=50.08 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
+.-+|+|+|++||||||+...|....+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g~ 32 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFEL 32 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBCC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4467999999999999999999865543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.39 E-value=0.1 Score=49.40 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+.|+|.|.+||||||+++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.04 E-value=0.14 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.2
Q ss_pred eeEEEEEeecCCcccHHhHHhccc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
+-|++.|++||||||++..|....
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999996543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.00 E-value=0.091 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
+||+++|.+|+||||+...|....+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999975544
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.93 E-value=0.1 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
||+|+|++||||||++..|....+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6999999999999999999865544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.57 E-value=0.11 Score=49.72 Aligned_cols=26 Identities=31% Similarity=0.084 Sum_probs=21.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
.+|+|+|++||||||++..|...-+.
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~~ 29 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQL 29 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 35999999999999999999755543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.56 E-value=0.12 Score=49.15 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=21.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRI 226 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~ 226 (1043)
+|+|+|++||||||++..|....+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~ 27 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 58999999999999999998665443
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.38 E-value=0.13 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.104 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
+|+++|++||||||++..|....+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999755443
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=85.33 E-value=0.12 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-.++|+|+.|||||||+..|+..
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999743
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.16 E-value=0.5 Score=46.35 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=48.9
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCC
Q psy11896 49 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 116 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~ 116 (1043)
.+.+.++|||+... ..+...+..+|.+++|+.....-..........+.+.++|++ +|+||.|...
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEccccccc--ccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhccccccc
Confidence 45799999998754 456667888999999998763222344555666777888976 8999998654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.59 E-value=0.15 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred eeEEEEEeecCCcccHHhHHhc
Q psy11896 200 RNIGISAHIDSGKTTLTERILF 221 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~ 221 (1043)
-.++|+|+.|||||||++.|+.
T Consensus 42 e~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3599999999999999999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.05 E-value=0.14 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.6
Q ss_pred eeEEEEEeecCCcccHHhHHhc
Q psy11896 200 RNIGISAHIDSGKTTLTERILF 221 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~ 221 (1043)
..++++|+.|+|||||++.|+.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3589999999999999999964
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.92 E-value=0.13 Score=48.36 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=21.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
++|.++|++||||||+...|....+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999755543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.77 E-value=0.17 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcc
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-..|.++|.+||||||+...|...
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999643
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=83.64 E-value=0.16 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-.++|+|+.|||||||++.|+..
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999743
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.18 E-value=0.16 Score=50.35 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.4
Q ss_pred eEEEEEeecCCcccHHhHHh
Q psy11896 201 NIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.++++|+.|||||||++.|.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~ 52 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIG 52 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCcchhhHhcc
Confidence 48999999999999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.16 E-value=0.17 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-.++|+|+.|||||||+..|+..
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcc
Confidence 36999999999999999999743
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.14 E-value=0.19 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-.++|+|+.|+|||||++.|+..
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999743
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=83.10 E-value=0.17 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
+-|.|.|.+||||||++..|....+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4477889999999999999986654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=83.03 E-value=0.17 Score=48.39 Aligned_cols=26 Identities=12% Similarity=-0.048 Sum_probs=21.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
.+|+++|++||||||++..|....+.
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~g~ 29 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNFCV 29 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36889999999999999999765543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.62 E-value=0.18 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=19.5
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.++++|+.|||||||++.|...
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4899999999999999988643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.72 E-value=0.2 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.6
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.++++|+.|||||||++.|...
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4899999999999999999744
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.63 E-value=0.21 Score=47.34 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
+|.++|++||||||++..|....+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~ 28 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHA 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999765544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=0.19 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.6
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-|||.|.+|||||||++.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999744
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=81.39 E-value=0.2 Score=50.07 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.7
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-++++|+.|||||||++.|...
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999744
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=81.18 E-value=0.24 Score=46.08 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=21.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
.+-+.+.|.+||||||++..|....+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35578899999999999999976554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.09 E-value=0.21 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=20.0
Q ss_pred eEEEEEeecCCcccHHhHHhccc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
-|+++|++|||||||++.|....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999997543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=80.99 E-value=0.22 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=19.5
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.++++|+.|||||||+..|...
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4899999999999999998643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=80.78 E-value=0.17 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-++++|+.|||||||++.|...
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=80.76 E-value=0.24 Score=49.29 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.6
Q ss_pred eEEEEEeecCCcccHHhHHh
Q psy11896 201 NIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.++|+|+.|||||||+..|.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~ 52 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVN 52 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.66 E-value=0.27 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
+.|.++|++||||||++..|....+.
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~g~ 34 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKYGY 34 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55899999999999999999765543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.32 E-value=0.24 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
=|+|+|++|||||||++.|+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.19 E-value=0.25 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=19.2
Q ss_pred eEEEEEeecCCcccHHhHHhcc
Q psy11896 201 NIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
-++++|+.|||||||+..|...
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3789999999999999999744
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=80.08 E-value=0.2 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred eeEEEEEeecCCcccHHhHHhc
Q psy11896 200 RNIGISAHIDSGKTTLTERILF 221 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~ 221 (1043)
-.++|+|+.|||||||+..|+.
T Consensus 45 e~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3699999999999999998864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.26 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=21.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
..|+|+|++||||||.+..|...-+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~ 27 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGY 27 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999765443
|