Psyllid ID: psy11911

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
cHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cHcHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEEEHccc
MQKYRTFFMNLSHCRSLLESLeshldpatrnKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQrvpnlsamtcsdyKQYESLFKALDEDMKVHLVRTTQLVSVCRSItnlidcphlepateshrFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRsrdnfenamrvfpvsdEVLQRQLYGQLEDRWNKLVSCVteqnpsfdgnvdfTQFEYELDQL
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEqnpsfdgnvdfTQFEYELDQL
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
****RTFFMNLSHCRSLLE****************LHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIE*****NNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFE******
*QKYRTFFMNLSHCRSLLES******************QLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQ***************QYESLFKALDEDMKVHLVRTTQLVSVCRS*************TESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAH*****************ELKAQIEF*****D***DNFE******************GQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYE****
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLxxxxxxxxxxxxxxxxxxxxxNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDGNVDFTQFEYELDQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
328792223 8130 PREDICTED: hypothetical protein LOC55131 0.896 0.030 0.452 7e-61
380027104 1151 PREDICTED: uncharacterized protein LOC10 0.928 0.225 0.439 9e-61
383859152 12235 PREDICTED: nesprin-1-like [Megachile rot 0.924 0.021 0.430 5e-59
340709092 16892 PREDICTED: hypothetical protein LOC10064 0.896 0.014 0.440 5e-59
307206052 5147 Nesprin-1 [Harpegnathos saltator] 0.924 0.050 0.430 9e-58
332027402 11559 Nesprin-1 [Acromyrmex echinatior] 0.924 0.022 0.434 1e-57
307175147 8493 Nesprin-2 [Camponotus floridanus] 0.910 0.029 0.439 2e-57
322802859 7174 hypothetical protein SINV_80610 [Solenop 0.924 0.035 0.438 3e-57
357621156 7838 muscle-specific protein 300 [Danaus plex 0.921 0.032 0.412 2e-56
242014266 6758 nesprin, putative [Pediculus humanus cor 0.903 0.037 0.447 2e-55
>gi|328792223|ref|XP_623719.3| PREDICTED: hypothetical protein LOC551319 [Apis mellifera] Back     alignment and taxonomy information
 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/252 (45%), Positives = 173/252 (68%), Gaps = 2/252 (0%)

Query: 1    MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
            MQK+R FF+NL+HCR +LESLE +LDP TR K+S+LH++LH +A  +LD+AA R+QQMAL
Sbjct: 6095 MQKHRKFFVNLNHCRGILESLEGNLDPETRTKYSDLHEELHSRAISLLDQAASRAQQMAL 6154

Query: 61   AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQ 120
            AAS+WI L+Q + EE  WL +  QRVP+L  +T SDY QY SL+++L  D+  H  R  Q
Sbjct: 6155 AASRWILLEQGVKEERGWLQVAHQRVPDLQTVTSSDYDQYISLYQSLATDVATHHARLIQ 6214

Query: 121  LVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLE 180
            L++V RS+  L++    E         I+ L+ ++ S L KL +F E W+  + L +RLE
Sbjct: 6215 LLNVARSLEELVNIEDPEDRYGEALDVIVKLQDNVESSLRKLLSFKESWVNQEMLMNRLE 6274

Query: 181  SWMDAHQNQIESLN--KSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPVSDEVLQ 238
            +WM + + ++ +L      +++ +WELKAQ E +N + + + ++FE A+R+ P+SDE+LQ
Sbjct: 6275 NWMTSVEKELNNLRDPSGGHIRQFWELKAQYEVHNNIREEANNSFEQALRIIPLSDEMLQ 6334

Query: 239  RQLYGQLEDRWN 250
            RQ + +L+DRWN
Sbjct: 6335 RQFHCELQDRWN 6346

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380027104|ref|XP_003697272.1| PREDICTED: uncharacterized protein LOC100865366 [Apis florea] Back     alignment and taxonomy information
>gi|383859152|ref|XP_003705060.1| PREDICTED: nesprin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340709092|ref|XP_003393148.1| PREDICTED: hypothetical protein LOC100648310 [Bombus terrestris] Back     alignment and taxonomy information
>gi|307206052|gb|EFN84145.1| Nesprin-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332027402|gb|EGI67485.1| Nesprin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307175147|gb|EFN65249.1| Nesprin-2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322802859|gb|EFZ23051.1| hypothetical protein SINV_80610 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|357621156|gb|EHJ73088.1| muscle-specific protein 300 [Danaus plexippus] Back     alignment and taxonomy information
>gi|242014266|ref|XP_002427812.1| nesprin, putative [Pediculus humanus corporis] gi|212512281|gb|EEB15074.1| nesprin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
FB|FBgn026183613 Msp-300 "Muscle-specific prote 0.917 19.69 0.397 8.2e-50
RGD|620546 2838 Syne1 "spectrin repeat contain 0.788 0.077 0.215 2.3e-08
UNIPROTKB|F1S7X0 2164 F1S7X0 "Uncharacterized protei 0.906 0.116 0.194 3.4e-06
MGI|MGI:1927152 8799 Syne1 "spectrin repeat contain 0.899 0.028 0.180 1.1e-05
UNIPROTKB|F1NG02 8787 SYNE1 "Uncharacterized protein 0.906 0.028 0.182 2.5e-05
MGI|MGI:2449316 6874 Syne2 "spectrin repeat contain 0.899 0.036 0.192 2.5e-05
UNIPROTKB|J9P7I2 8749 SYNE1 "Uncharacterized protein 0.788 0.025 0.201 2.7e-05
UNIPROTKB|F1PER7 8764 SYNE1 "Uncharacterized protein 0.788 0.025 0.201 2.7e-05
UNIPROTKB|I3LTM2 6866 SYNE2 "Uncharacterized protein 0.903 0.036 0.182 9.1e-05
UNIPROTKB|F1SRR5 6897 SYNE2 "Uncharacterized protein 0.903 0.036 0.182 9.1e-05
FB|FBgn0261836 Msp-300 "Muscle-specific protein 300" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 543 (196.2 bits), Expect = 8.2e-50, P = 8.2e-50
 Identities = 105/264 (39%), Positives = 167/264 (63%)

Query:     1 MQKYRTFFMNLSHCRSLLESLESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMAL 60
             +QK R FF+NLSHCR++LESLE ++D  TR K SELHK+L+ +A  +LDKA+ RS ++  
Sbjct: 11476 VQKQRKFFVNLSHCRAMLESLEENIDSETREKHSELHKELYNRATSLLDKASERSSKLVQ 11535

Query:    61 AASKWISLDQNLHEEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQ 120
             AAS+W  L++ + +E  WL + QQRVP+LSA+T +DY QY +L+++L  D+  H V+ TQ
Sbjct: 11536 AASRWTVLEKGMRDELQWLQVAQQRVPDLSAVTSADYDQYTTLYQSLSNDISHHYVKMTQ 11595

Query:   121 LVSVCRSITNLIDCPHLEPATESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLE 180
             L  +   +  L+  P+L   T      +L L   ++  L +L  F E W++Y+   D+LE
Sbjct: 11596 LSGIANKLQLLVQAPNLVEETNEALIVLLKLREEVALYLHRLLVFKEIWVQYEQQTDKLE 11655

Query:   181 SWM-DAHQN----QIESL---NKSNNMKSYWELKAQIEFYNTLLDRSRDNFENAMRVFPV 232
             +++ +A Q     QI S        +M+ +WE+KA+ E +N +   +  +FE +++V P+
Sbjct: 11656 AFVREAEQELRNIQIPSQPTHQPIEHMRQFWEIKARFELHNNVRTDTGLSFEKSLQVIPL 11715

Query:   233 SDEVLQRQLYGQLEDRWNKLVSCV 256
             +DE+LQRQ + QLEDRW  +   +
Sbjct: 11716 ADEMLQRQFHAQLEDRWQAVAQAI 11739
GO:0003779 "actin binding" evidence=ISS;NAS;IDA
GO:0015629 "actin cytoskeleton" evidence=IDA
GO:0008305 "integrin complex" evidence=IDA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0007498 "mesoderm development" evidence=NAS
GO:0003725 "double-stranded RNA binding" evidence=NAS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0007010 "cytoskeleton organization" evidence=ISS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0008335 "female germline ring canal stabilization" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP
GO:0007015 "actin filament organization" evidence=IMP
GO:0040023 "establishment of nucleus localization" evidence=IMP
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0030018 "Z disc" evidence=IDA
GO:0016477 "cell migration" evidence=IMP
GO:0007519 "skeletal muscle tissue development" evidence=IMP
GO:0007523 "larval visceral muscle development" evidence=IMP
GO:0060361 "flight" evidence=IMP
GO:0031965 "nuclear membrane" evidence=IDA
GO:0051640 "organelle localization" evidence=IMP
GO:0040011 "locomotion" evidence=IMP
RGD|620546 Syne1 "spectrin repeat containing, nuclear envelope 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S7X0 F1S7X0 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1927152 Syne1 "spectrin repeat containing, nuclear envelope 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG02 SYNE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2449316 Syne2 "spectrin repeat containing, nuclear envelope 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7I2 SYNE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PER7 SYNE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTM2 SYNE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRR5 SYNE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
cd00176213 SPEC Spectrin repeats, found in several proteins i 99.44
cd00176213 SPEC Spectrin repeats, found in several proteins i 98.26
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 97.94
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 97.72
smart00150101 SPEC Spectrin repeats. 97.34
smart00150101 SPEC Spectrin repeats. 97.09
KOG0517|consensus 2473 96.69
KOG4286|consensus 966 96.63
KOG0517|consensus 2473 95.82
PF08580 683 KAR9: Yeast cortical protein KAR9; InterPro: IPR01 84.16
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information 
Probab=99.44  E-value=2.2e-11  Score=100.70  Aligned_cols=201  Identities=15%  Similarity=0.191  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCccc-chhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhcc--cCCCchHH
Q psy11911         64 KWISLDQNLHEEAAWLNIVQQRVPNLSAM-TCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLI--DCPHLEPA  140 (279)
Q Consensus        64 ~W~~Ld~~~~~~~~wLe~~e~~iP~v~lV-teerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V--~cp~LE~q  140 (279)
                      .|..|..+++++..||...+..+=+...+ +.+...+.+.-++.+..++..|.+.+-.+...|+.|....  .++.+...
T Consensus         1 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~   80 (213)
T cd00176           1 KLQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQER   80 (213)
T ss_pred             CHHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            48899999999999999999888776666 4667889999999999999999999999999999999987  57789999


Q ss_pred             hhHHHHHHHhhhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhccccC---c----cchhHHHHHHHHhhhhh
Q psy11911        141 TESHRFEILNLERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNK---S----NNMKSYWELKAQIEFYN  213 (279)
Q Consensus       141 ~~~l~e~wl~l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~v---p----d~l~~F~Efskeve~ks  213 (279)
                      +..+...|-.+...+.....+|+.....|..|+.... +..||..+...|....+   |    ..+..+=.|..++..+.
T Consensus        81 ~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (213)
T cd00176          81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHE  159 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhch
Confidence            9999999999999999999999999999999998776 99999999999986333   2    78888889999999888


Q ss_pred             hhhhhhhhHHHhhhcccCcchHHHHHHHHHhHHHHHHHHHhhhhhhccCCcc
Q psy11911        214 TLLDRSRDNFENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSFDG  265 (279)
Q Consensus       214 slk~s~~~~~~qaL~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~iQe~~~~  265 (279)
                      +.-.++...+.+.+...+-.+....+..+..|..+|..|.+.++..+..+..
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~  211 (213)
T cd00176         160 PRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE  211 (213)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777776667766676665555889999999999999999999988776543

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 53/330 (16%), Positives = 94/330 (28%), Gaps = 86/330 (26%)

Query: 2   QKYRTFFMNLSHCRSLLESLESHLD----PATRNKFSELHKQLHQQACDIL----DKAAI 53
            + R    +  +   LL      L         N F  L        C IL     K   
Sbjct: 232 AELRRLLKSKPYENCLLV-----LLNVQNAKAWNAF-NLS-------CKILLTTRFKQVT 278

Query: 54  RSQQMALAASKWISLDQNL----HEE-----AAWLNIVQQRVPNLSAMTCSDYKQYESLF 104
               ++ A +  ISLD +      +E       +L+    R  +L     +   +  S+ 
Sbjct: 279 DF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREVLTTNPRRLSII 333

Query: 105 KALDEDMKVHLVRTTQLVSVCRSITNLIDC--PHLEPATESHRFE---ILNLERSISSGL 159
                D          +   C  +T +I+     LEPA     F+   +      I + L
Sbjct: 334 AESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 160 IKLSTFTEYWLEY---------QTLADR--LESWMDA-----HQNQIESLNKSNNMKSYW 203
           + L      W +            L     +E              +E   K  N     
Sbjct: 392 LSL-----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY--- 443

Query: 204 EL-KAQIEFYNTLLDRSRDNFENA-------------MRVFPVSDEV-LQRQLYGQLEDR 248
            L ++ ++ YN       D+                 ++     + + L R ++  L+ R
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFR 501

Query: 249 W--NKLVSCVTEQNPSFDGNVDFTQFE-YE 275
           +   K+    T  N S        Q + Y+
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 99.54
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.53
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.42
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 99.31
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.29
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 99.29
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 99.24
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.22
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 99.15
1hci_A 476 Alpha-actinin 2; triple-helix coiled coil, contrac 99.13
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 99.09
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 98.98
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 98.92
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 98.84
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 98.81
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 98.76
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 98.69
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 98.42
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 98.37
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 98.3
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 98.21
3uun_A119 Dystrophin; triple helical, cell structure and sta 98.11
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 98.11
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 98.09
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 98.02
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 97.88
3pe0_A283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 97.71
3f31_A149 Spectrin alpha chain, brain; LONE helix followed b 97.7
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 97.7
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 97.67
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 97.66
3lbx_A161 Spectrin alpha chain, erythrocyte; tetramer, compl 97.64
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 97.63
3uun_A119 Dystrophin; triple helical, cell structure and sta 97.6
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 97.53
3r6n_A 450 Desmoplakin; spectrin repeat, SH3 domain, cell adh 97.5
3pdy_A210 Plectin; cytoskeleton, plakin, intermediate filame 97.17
2iak_A224 Bullous pemphigoid antigen 1, isoform 5; triple he 97.08
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 96.85
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 94.77
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 94.49
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 94.26
2spc_A107 Spectrin; cytoskeleton; 1.80A {Drosophila melanoga 93.34
3pe0_A 283 Plectin; cytoskeleton, plakin, spectrin repeat, SH 88.58
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 83.12
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 82.99
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
Probab=99.54  E-value=6.9e-12  Score=111.81  Aligned_cols=253  Identities=13%  Similarity=0.153  Sum_probs=197.5

Q ss_pred             hhhhHhhhcchh-HHHHHHH-------HhhcCChhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q psy11911          2 QKYRTFFMNLSH-CRSLLES-------LESHLDPATRNKFSELHKQLHQQACDILDKAAIRSQQMALAASKWISLDQNLH   73 (279)
Q Consensus         2 qKhk~FF~~L~h-~~~iLEs-------l~~kld~~t~~k~~~~h~eL~~~A~~iL~~A~~Rg~~Le~~ls~W~~Ld~~~~   73 (279)
                      .||+.|=..+.. ...-+++       |-..-.|. .+.-.+.-.++..+=..+.+.+..|...|+.++ ....|..++.
T Consensus        46 ~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~-~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~f~~~~~  123 (323)
T 3edv_A           46 ERFREFARDTGNIGQERVDTVNHLADELINSGHSD-AATIAEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAK  123 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            578888777764 2222222       22211222 223333345666777888889999999999988 6788999999


Q ss_pred             HHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhccc---CCCchHHhhHHHHHHHh
Q psy11911         74 EEAAWLNIVQQRVPNLSAMTCSDYKQYESLFKALDEDMKVHLVRTTQLVSVCRSITNLID---CPHLEPATESHRFEILN  150 (279)
Q Consensus        74 ~~~~wLe~~e~~iP~v~lVteerl~erIslYQ~l~~~l~~hq~kL~Q~l~~gk~L~~~V~---cp~LE~q~~~l~e~wl~  150 (279)
                      ++..||...+..+|+----.-..+...+.-|+.+..+|..|++++.++.+.|.+|...-.   .|.+..++..+...|-.
T Consensus       124 e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~  203 (323)
T 3edv_A          124 EIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKS  203 (323)
T ss_dssp             HHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999888863111124456688889999999999999999999999999987531   23477789999999999


Q ss_pred             hhHHHhhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhccccCc-------cchhHHHHHHHHhhhhhhhhhhhhhHH
Q psy11911        151 LERSISSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKS-------NNMKSYWELKAQIEFYNTLLDRSRDNF  223 (279)
Q Consensus       151 l~~kV~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~vp-------d~l~~F~Efskeve~ksslk~s~~~~~  223 (279)
                      +...+...-.+|+.... +.+|....+++..||..+...|....+|       ..|..+=+|++|++.+..--..+...+
T Consensus       204 l~~~~~~r~~~L~~~~~-~~~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g  282 (323)
T 3edv_A          204 LLDACESRRVRLVDTGD-KFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELG  282 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999885 7899999999999999999999976555       568889999999999887777666666


Q ss_pred             HhhhcccCcchHHHHHHHHHhHHHHHHHHHhhhhh
Q psy11911        224 ENAMRVFPVSDEVLQRQLYGQLEDRWNKLVSCVTE  258 (279)
Q Consensus       224 ~qaL~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~  258 (279)
                      .+++.- .-.+....+..+..+.++|..|......
T Consensus       283 ~~Ll~~-~~~~~~~i~~~l~~L~~~w~~l~~~w~~  316 (323)
T 3edv_A          283 KSLLAR-KHYASEEIKEKLLQLTEKRKEMIDKWED  316 (323)
T ss_dssp             HHHHHT-TCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665563 3357788999999999999999887654
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0 Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens} Back     alignment and structure
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Back     alignment and structure
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1 Back     alignment and structure
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 98.06
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 97.97
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.74
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.59
d1owaa_156 Spectrin alpha chain {Human (Homo sapiens) [TaxId: 97.57
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 97.47
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 97.44
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.42
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.31
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.24
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 97.14
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 97.04
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 97.01
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 97.01
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 96.82
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 96.75
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 96.71
d1quua2124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 96.13
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 95.96
d2spca_107 Spectrin alpha chain {Drosophila sp. [TaxId: 7242] 94.36
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=60.53  Aligned_cols=107  Identities=9%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             hhHhHhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhccccCc--------cchhHHHHHHHHhhhhhhhhhhhhhHHHhhh
Q psy11911        156 SSGLIKLSTFTEYWLEYQTLADRLESWMDAHQNQIESLNKS--------NNMKSYWELKAQIEFYNTLLDRSRDNFENAM  227 (279)
Q Consensus       156 ~~eL~RL~~~lkhW~~Y~~~s~~L~~WL~sA~~~L~~l~vp--------d~l~~F~Efskeve~ksslk~s~~~~~~qaL  227 (279)
                      ++++.|+..+......|..+++.+..||......|.+-..|        ..+..|=+|.+++..+.+--......+++++
T Consensus         3 ~~e~~R~~~l~~~~q~F~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~l~~~~~~L~   82 (124)
T d1quua1           3 SNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELN   82 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            57889999998777899999999999999999999764432        6678899999999999888888888888888


Q ss_pred             cccCcchHHHHHHHHHhHHHHHHHHHhhhhhhccCC
Q psy11911        228 RVFPVSDEVLQRQLYGQLEDRWNKLVSCVTEQNPSF  263 (279)
Q Consensus       228 ~~~~i~De~~~R~~l~q~e~~W~~l~~~ip~iQe~~  263 (279)
                      .--| .|....++.+..|.++|.+|...+.+-...|
T Consensus        83 ~~~~-~~~~~i~~~~~~l~~rW~~L~~~~~~R~~~L  117 (124)
T d1quua1          83 ELDY-HDAVNVNDRCQKICDQWDRLGTLTQKRREAL  117 (124)
T ss_dssp             HTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8666 5899999999999999999998876654443
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Back     information, alignment and structure