Psyllid ID: psy11936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | 2.2.26 [Sep-21-2011] | |||||||
| Q6MG08 | 839 | ATP-binding cassette sub- | yes | N/A | 0.680 | 0.444 | 0.639 | 1e-122 | |
| Q767L0 | 807 | ATP-binding cassette sub- | yes | N/A | 0.697 | 0.473 | 0.622 | 1e-122 | |
| Q7YR37 | 807 | ATP-binding cassette sub- | yes | N/A | 0.697 | 0.473 | 0.622 | 1e-121 | |
| Q8NE71 | 845 | ATP-binding cassette sub- | no | N/A | 0.680 | 0.441 | 0.626 | 1e-120 | |
| Q6P542 | 837 | ATP-binding cassette sub- | yes | N/A | 0.680 | 0.445 | 0.637 | 1e-119 | |
| Q9M1H3 | 723 | ABC transporter F family | yes | N/A | 0.666 | 0.504 | 0.454 | 8e-92 | |
| Q8H0V6 | 715 | ABC transporter F family | no | N/A | 0.751 | 0.576 | 0.383 | 3e-76 | |
| Q9FJH6 | 595 | ABC transporter F family | no | N/A | 0.614 | 0.566 | 0.395 | 3e-69 | |
| Q8T6B7 | 593 | ABC transporter F family | no | N/A | 0.609 | 0.563 | 0.411 | 4e-69 | |
| Q9UG63 | 623 | ATP-binding cassette sub- | no | N/A | 0.605 | 0.532 | 0.398 | 2e-68 |
| >sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/386 (63%), Positives = 309/386 (80%), Gaps = 13/386 (3%)
Query: 102 MEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDL 161
M++++QVE++ + + ++F++SQ E + Q A LENA DIK+E FSISA G +L
Sbjct: 259 MDYERQVESL-----KAANAAENDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKEL 312
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
FVNA+L I GRRYGLVGPNG GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV+
Sbjct: 313 FVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQ 372
Query: 222 SVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+VL+AD KR LL E +LE D ++ E+L+++YEEL+A GA +AE +ARRILA
Sbjct: 373 AVLRADTKRLRLLEEEKRLQGQLEQGDDTA--AEKLEKVYEELRATGAAAAEAKARRILA 430
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
GLGF MQ+R T+ FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQG
Sbjct: 431 GLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQG 490
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEK 397
W+KTLLIVSHDQ FLD+VC +IIHLD Q+L+YY+GNY FKKMY QK KE +K++EKQEK
Sbjct: 491 WRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEK 550
Query: 398 RIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457
++KELKA G+S KQAEK+TKEVLTRKQ+K + K Q +E Q P EL+++PREY V+F+FP
Sbjct: 551 KLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQD-EESQDPPELLKRPREYTVRFTFP 609
Query: 458 DPPPLQPPILGLHNVTFAYEGMKPLL 483
DPPPL PP+LGLH VTF YEG KPL
Sbjct: 610 DPPPLSPPVLGLHGVTFGYEGQKPLF 635
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/395 (62%), Positives = 312/395 (78%), Gaps = 13/395 (3%)
Query: 93 KEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENF 152
KEK K + ME+++QV ++ + + ++F++SQ E + Q A LENA DIK+E F
Sbjct: 218 KEKAKKAEQMEYERQVASL-----KAANAAENDFSVSQAEMSSRQ-AMLENASDIKLEKF 271
Query: 153 SISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212
SISA G +LFVNA+L I GRRYGLVGPNG GKTTLL+HIA+R L +PPNID+L CEQEV
Sbjct: 272 SISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEV 331
Query: 213 VADDLTAVESVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
VAD+ AV++VL+AD KR +LL E +LE D ++ ++L+++YEEL+A GA +A
Sbjct: 332 VADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAA--DRLEKVYEELRATGAAAA 389
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E +ARRILAGLGF MQ+R T+ FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAV
Sbjct: 390 EAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAV 449
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKER 388
IWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIHLD Q+L+YY+GNY FKKMY QK KE
Sbjct: 450 IWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKEL 509
Query: 389 MKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR 448
+K++EKQEK++KELKA G+S KQAEK+TKE LTRKQ+K + K Q + + P EL+++P+
Sbjct: 510 LKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPK 568
Query: 449 EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 483
EY V+F+FPDPPPL PP+LGLH VTF YEG KPL
Sbjct: 569 EYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLF 603
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Sus scrofa (taxid: 9823) |
| >sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/395 (62%), Positives = 311/395 (78%), Gaps = 13/395 (3%)
Query: 93 KEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENF 152
KEK K + ME+++QV ++ + + ++F++SQ E + Q A LENA DIK+E F
Sbjct: 218 KEKAKKAEQMEYERQVASL-----KAANAAENDFSVSQAEMSSRQ-AMLENASDIKLEKF 271
Query: 153 SISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212
SISA G +LFVNA+L I RRYGLVGPNG GKTTLL+HIA+R L +PPNID+L CEQEV
Sbjct: 272 SISAHGKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEV 331
Query: 213 VADDLTAVESVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
VAD+ AV++VL+AD KR +LL E +LE D ++ E+L+++YEEL+A GA +A
Sbjct: 332 VADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTA--AERLEKVYEELRATGAAAA 389
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E +ARRILAGLGF MQ+R T+ FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAV
Sbjct: 390 EAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAV 449
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKER 388
IWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIHLD Q+L+YY+GNY FKKMY QK KE
Sbjct: 450 IWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKEL 509
Query: 389 MKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR 448
+K++EKQEK++KELKA G+S KQAEK+TKE LTRKQ+K + K Q + + P EL+++P+
Sbjct: 510 LKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPK 568
Query: 449 EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 483
EY V+F+FPDPPPL PP+LGLH VTF YEG KPL
Sbjct: 569 EYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLF 603
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Pan troglodytes (taxid: 9598) |
| >sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/386 (62%), Positives = 307/386 (79%), Gaps = 13/386 (3%)
Query: 102 MEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDL 161
ME+++QV ++ + + ++F++SQ E + Q A LENA DIK+E FSISA G +L
Sbjct: 265 MEYERQVASL-----KAANAAENDFSVSQAEMSSRQ-AMLENASDIKLEKFSISAHGKEL 318
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
FVNA+L I GRRYGLVGPNG GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV+
Sbjct: 319 FVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQ 378
Query: 222 SVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+VL+AD KR +LL E +LE D ++ E+L+++YEEL+A GA +AE +ARRILA
Sbjct: 379 AVLRADTKRLKLLEEERRLQGQLEQGDDTA--AERLEKVYEELRATGAAAAEAKARRILA 436
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
GLGF MQ+R T+ FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQG
Sbjct: 437 GLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQG 496
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEK 397
W+KTLLIVSHDQ FLD+VC +IIHLD Q+L+YY+GNY FKKMY QK KE +K++EKQEK
Sbjct: 497 WRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEK 556
Query: 398 RIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457
++KELKA G+S KQAEK+TKE LTRKQ+K + K Q + + P EL+++P+EY V+F+FP
Sbjct: 557 KLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFP 615
Query: 458 DPPPLQPPILGLHNVTFAYEGMKPLL 483
DPPPL PP+LGLH VTF Y+G KPL
Sbjct: 616 DPPPLSPPVLGLHGVTFGYQGQKPLF 641
|
Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/386 (63%), Positives = 309/386 (80%), Gaps = 13/386 (3%)
Query: 102 MEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDL 161
M++++QVE++ + + ++F++SQ E + Q A LENA DIK+E FSISA G +L
Sbjct: 257 MDYERQVESL-----KAANAAENDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKEL 310
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
FVNA+L I GRRYGLVGPNG GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV+
Sbjct: 311 FVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQ 370
Query: 222 SVLKADVKRTELLAEC----AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+VL+AD KR LL E +LE D ++ E+L+++YEEL+A GA +AE +ARRILA
Sbjct: 371 AVLRADTKRLRLLEEERRLQGQLEQGDDTA--AEKLEKVYEELRATGAAAAEAKARRILA 428
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
GLGF MQ+R T+ FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQG
Sbjct: 429 GLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQG 488
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEK 397
W+KTLLIVSHDQ FLD+VC +IIHLD Q+L+YY+GNY FKKMY QK KE +K++EKQEK
Sbjct: 489 WRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEK 548
Query: 398 RIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457
++KELKA G+S KQAEK+TKEVLTRKQ+K + K Q +E Q P EL+++P+EY V+F+FP
Sbjct: 549 KLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQD-EESQEPPELLKRPKEYTVRFTFP 607
Query: 458 DPPPLQPPILGLHNVTFAYEGMKPLL 483
DPPPL PP+LGLH VTF YEG KPL
Sbjct: 608 DPPPLSPPVLGLHGVTFGYEGQKPLF 633
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Mus musculus (taxid: 10090) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 253/381 (66%), Gaps = 16/381 (4%)
Query: 124 DNFTISQMEKTG---GQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGP 180
D FT+ KT G A N DI +E+FS+SA+G +L NA++ I++G+RYGL+GP
Sbjct: 137 DAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSARGKELLKNASVRISHGKRYGLIGP 196
Query: 181 NGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL 240
NG GK+TLL+ +A R + VP NID+L EQEVV D+ +A+ +V+ A+ + +L E L
Sbjct: 197 NGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEKSALNAVVSANEELVKLREEAEAL 256
Query: 241 EAADFSSEQQE-----------QLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA 289
+ + ++ + +L E+Y+ L+ +G+D+AE +A +ILAGLGF++ MQ RA
Sbjct: 257 QKSSSGADGENVDGEDDDDTGEKLAELYDRLQILGSDAAEAQASKILAGLGFTKDMQVRA 316
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 349
T++FSGGWRMR+SLARAL+++PTLLLLDEPTNHLDL AV+WL+ YL WKKTL++VSHD+
Sbjct: 317 TQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDR 376
Query: 350 SFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSK 409
FL+ VC EIIHL Q L++Y+GN+ F+ Y Q+ KE K+F+ +K++K K G
Sbjct: 377 DFLNTVCTEIIHLHDQNLHFYRGNFDGFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRG 436
Query: 410 KQAEKKTKEVLTRKQEKNKSKLQ-KADEDQGPT-ELIQKPREYVVKFSFPDPPPLQPPIL 467
+Q + K + T +E +KSK + K +++GP E +K R+Y V F FP+P L PP+L
Sbjct: 437 QQEKVKDRAKFTAAKEASKSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTELTPPLL 496
Query: 468 GLHNVTFAYEGMKPLLMSKAD 488
L V+F+Y +S D
Sbjct: 497 QLIEVSFSYPNRPDFRLSNVD 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 261/464 (56%), Gaps = 52/464 (11%)
Query: 46 KETPKVDDIPVP-----ASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKMKK 100
K TP V + +P D+ P K++ +PE P + E A +++ K+K ++
Sbjct: 84 KPTPTVRSLAMPVRMNDGMDDGPVKKK-KPEPVDGPLLTERDLAKIERR---KKKDDRQR 139
Query: 101 DMEFQKQV-ETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGN 159
++++Q+ V E K G T+S TGG A DI ++NF++S G
Sbjct: 140 ELQYQQHVAEMEAAKAGMP--------TVSVNHDTGGGSAIR----DIHMDNFNVSVGGR 187
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLT 218
DL V+ ++ ++ GR YGLVG NG GKTT LR++A ++ +P N IL+ EQEVV D T
Sbjct: 188 DLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNCQILHVEQEVVGDKTT 247
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQ------------------QEQLKEIYEEL 260
A++ VL D++RT+LL E ++ A +E+ ++L+EIY+ L
Sbjct: 248 ALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPTKDTVEGDLMSQRLEEIYKRL 307
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
AI A +AE RA ILAGL F+ MQ +AT FSGGWRMR++LARAL+IEP LLLLDEPT
Sbjct: 308 DAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALARALFIEPDLLLLDEPT 367
Query: 321 NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380
NHLDL+AV+WL+ YL W KT ++VSH + FL+ V +IIHL QKL YKGNY +F++
Sbjct: 368 NHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLSTYKGNYDIFERT 427
Query: 381 YAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGP 440
++ K + K FE E+ ++A + K+ V +S+++ D
Sbjct: 428 REEQVKNQQKAFESSERSRSHMQAFIDKFRYNAKRASLV--------QSRIKALDRLAHV 479
Query: 441 TELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLM 484
++I P +Y +F PD P PPI+ + +F Y G PLL
Sbjct: 480 DQVINDP-DYKFEFPTPDDKP-GPPIISFSDASFGYPG-GPLLF 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 214/359 (59%), Gaps = 22/359 (6%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
D IS TG L + + DI++E+ S++ G DL V++ L + GRRYGL+G NG
Sbjct: 47 DALQISDRTCTG-VLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGC 105
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAA 243
GK+TLL I R++ +P +DI + E+ A D++++E+V+ D +R L E L
Sbjct: 106 GKSTLLTAIGRREIPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQQ 165
Query: 244 DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
D E+L+ IYE L A+ A++AE RA IL GLGF + MQ + TK+FSGGWRMR++L
Sbjct: 166 DDGG--GERLQSIYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMRIAL 223
Query: 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
ARAL+I PT+LLLDEPTNHLDL A +WL+ L+ + + L++VSH Q FL+ VC IIH+
Sbjct: 224 ARALFIMPTILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQ 283
Query: 364 QQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELK------AHGQSKKQAEKKTK 417
++L YY GN+ + + ++ + +MK++ ++++I +K HG +K + ++K
Sbjct: 284 SKQLKYYTGNFDQYCQTRSELEENQMKQYRWEQEQISHMKEYIARFGHGSAKLARQAQSK 343
Query: 418 EVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAY 476
E K E+ G TE + R+ V+ F F D L PP+L V+F Y
Sbjct: 344 EKTLAKMERG-----------GLTEKV--ARDSVLVFRFADVGKLPPPVLQFVEVSFGY 389
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8T6B7|ABCF2_DICDI ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/343 (41%), Positives = 208/343 (60%), Gaps = 9/343 (2%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
G LA+ E++ D+K+E +++ G +L + + I GRRYGL+G NG GK+T + +A R
Sbjct: 42 GALASKESSRDVKIEQVTLTFHGKELLSDTTVEINFGRRYGLIGQNGCGKSTFFQCLAVR 101
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE 255
+L +P +IDI + +E + TA++SV+ D ++ E + + + E+L +
Sbjct: 102 ELPIPEHIDIFHLSEEAHPSERTALQSVID-DAEKEVKRLEVLEERLLEEQGPESEELFD 160
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+YE L+ + + PRA IL GLGF+ + TK+ SGGWRMRVSLA+AL+I+PTLLL
Sbjct: 161 VYERLENLDPTTFVPRASEILIGLGFTSQTMLKKTKDLSGGWRMRVSLAKALFIKPTLLL 220
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
LDEPTNHLDL A +WL++YL + ++L+I+SH Q FL+ VC IIH+ Q KL YY GNY
Sbjct: 221 LDEPTNHLDLGACVWLEDYLANYDRSLIIISHSQDFLNAVCTNIIHMTQSKLKYYGGNYD 280
Query: 376 MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKAD 435
F K A+ +MK + KQ++ I +K+ A T L R Q K+K K+
Sbjct: 281 NFVKTKAELEVNQMKAYHKQQEEIAHIKSF-----IASCGTYSNLVR-QGKSKQKIIDKM 334
Query: 436 EDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEG 478
E+ G E +Q+ + + FSFP L PPI+ NVTF+Y G
Sbjct: 335 EEAGLVERVQEDK--IFNFSFPPCGELAPPIMHFDNVTFSYSG 375
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 208/354 (58%), Gaps = 22/354 (6%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
G LA+ N+ D+ + N S++ G +L + L + +GRRYGL+G NG GK+ LL I R
Sbjct: 75 GVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKR 134
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE 255
++ +P +IDI + +E+ D T + V++ D +R L E +L D + E+L E
Sbjct: 135 EVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERLAHED---AECEKLME 191
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+YE L+ + AD AE RA RIL GLGF+ AMQ + K+FSGGWRMRV+LARAL+I P +LL
Sbjct: 192 LYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLL 251
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
LDEPTNHLDL+A +WL+ L+ +K+ L++VSH Q FL+ VC IIH+ +KL YY GNY
Sbjct: 252 LDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYD 311
Query: 376 MFKKMYAQKSKERMKEFEKQEKRIKELK------AHGQSKKQAEKKTKEVLTRKQEKNKS 429
+ K + + +MK F ++ +I +K HG +K L R+ + +
Sbjct: 312 QYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAK----------LARQAQSKEK 361
Query: 430 KLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 483
LQK G TE + + + F FP + PP++ + NV+F Y P +
Sbjct: 362 TLQKM-MASGLTERVVSDK--TLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCI 412
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| 91076670 | 807 | PREDICTED: similar to AGAP012249-PA [Tri | 0.691 | 0.469 | 0.819 | 1e-176 | |
| 195131517 | 904 | GI15800 [Drosophila mojavensis] gi|19390 | 0.698 | 0.423 | 0.753 | 1e-170 | |
| 195048050 | 929 | GH24766 [Drosophila grimshawi] gi|193893 | 0.813 | 0.480 | 0.693 | 1e-169 | |
| 195394095 | 914 | GJ18654 [Drosophila virilis] gi|19415019 | 0.700 | 0.420 | 0.746 | 1e-168 | |
| 194767886 | 911 | GF19482 [Drosophila ananassae] gi|190622 | 0.697 | 0.419 | 0.745 | 1e-168 | |
| 24641342 | 901 | CG1703 [Drosophila melanogaster] gi|7292 | 0.691 | 0.420 | 0.742 | 1e-167 | |
| 195355244 | 902 | GM13097 [Drosophila sechellia] gi|194129 | 0.691 | 0.420 | 0.740 | 1e-167 | |
| 195448447 | 890 | GK25023 [Drosophila willistoni] gi|19416 | 0.700 | 0.431 | 0.744 | 1e-166 | |
| 125983764 | 924 | GA14282 [Drosophila pseudoobscura pseudo | 0.698 | 0.414 | 0.744 | 1e-166 | |
| 170038583 | 899 | ATP-binding cassette sub-family F member | 0.693 | 0.422 | 0.757 | 1e-166 |
| >gi|91076670|ref|XP_971562.1| PREDICTED: similar to AGAP012249-PA [Tribolium castaneum] gi|270002367|gb|EEZ98814.1| hypothetical protein TcasGA2_TC004420 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 314/383 (81%), Positives = 345/383 (90%), Gaps = 4/383 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
++KQ+ET+ KKGGQGHS+L NFT+SQ +KT GQLA LENAVDIK+ENFSISAKGNDLFV
Sbjct: 215 YEKQMETLLKKGGQGHSDLDSNFTVSQSQKTAGQLAQLENAVDIKIENFSISAKGNDLFV 274
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIANGR YGLVGPNGHGKTTLLRHIA R +PPNIDILYCEQEVVADD +AVESV
Sbjct: 275 NANLLIANGRHYGLVGPNGHGKTTLLRHIAQRAFAIPPNIDILYCEQEVVADDFSAVESV 334
Query: 224 LKADVKRTELLAECAKLEAADFSSEQ---QEQLKEIYEELKAIGADSAEPRARRILAGLG 280
LK+DVKRTELL EC KLE A F++ Q++L E+Y ELKAIGADSAEP+ARRILAGLG
Sbjct: 335 LKSDVKRTELLEECKKLEDA-FNTGDLGVQDRLNEVYAELKAIGADSAEPKARRILAGLG 393
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK 340
F++ MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK
Sbjct: 394 FTKEMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK 453
Query: 341 TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIK 400
TLLIVSHDQSFLDNVCNEIIHLD QKLYYYKGNYSMFKKMY QK KE +KE+EKQEKR+K
Sbjct: 454 TLLIVSHDQSFLDNVCNEIIHLDNQKLYYYKGNYSMFKKMYQQKRKEMIKEYEKQEKRLK 513
Query: 401 ELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP 460
ELKAHG SKKQAEKK KE LTRKQEKN++K+QK +++ PTEL+QKP+EY VKFSFP+PP
Sbjct: 514 ELKAHGSSKKQAEKKQKEALTRKQEKNRTKMQKQEDETAPTELLQKPKEYFVKFSFPEPP 573
Query: 461 PLQPPILGLHNVTFAYEGMKPLL 483
PLQPPILGLHNVTFAY G KPL
Sbjct: 574 PLQPPILGLHNVTFAYSGQKPLF 596
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195131517|ref|XP_002010197.1| GI15800 [Drosophila mojavensis] gi|193908647|gb|EDW07514.1| GI15800 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/390 (75%), Positives = 340/390 (87%), Gaps = 7/390 (1%)
Query: 103 EFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLF 162
E+++Q+E +TKKGG GHS+L +NFT+SQ++KT GQ AALE+AVDIK+ENF+ISAKGNDLF
Sbjct: 311 EYERQMELMTKKGGAGHSDLDNNFTMSQVQKTAGQQAALEHAVDIKIENFTISAKGNDLF 370
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222
VNANLLIA+GRRYGLVGPNGHGKTTLLRHIASR +PPNID+L CEQEVVA D TA+ +
Sbjct: 371 VNANLLIAHGRRYGLVGPNGHGKTTLLRHIASRAFAIPPNIDVLLCEQEVVATDKTAIAT 430
Query: 223 VLKADVKRTELLAECAKLE----AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG 278
+L+ADVKRT++L + +LE A D S QE+L + + ELKA+GA SAE RARRILAG
Sbjct: 431 ILEADVKRTKMLQKADELEKQFAAGDMSV--QEELNDTFAELKAMGAYSAEARARRILAG 488
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW 338
LGFS+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGW
Sbjct: 489 LGFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW 548
Query: 339 KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKR 398
KKTLLIVSHDQSFLDNVCNEIIHLDQ+KL+YYKGNYSMFKKMY QK +E +KE+EKQEKR
Sbjct: 549 KKTLLIVSHDQSFLDNVCNEIIHLDQKKLHYYKGNYSMFKKMYVQKRREMIKEYEKQEKR 608
Query: 399 IKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458
++ELKAHGQSKK AEKK KE LTRKQEKNKSK QK +ED GP EL+ +P+EY+VKF FP+
Sbjct: 609 LRELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQEEDDGPQELLARPKEYIVKFRFPE 668
Query: 459 PPPLQPPILGLHNVTFAYEGMKPLLMSKAD 488
P LQPPILG+HNVTFAYEG KPL + KAD
Sbjct: 669 PSQLQPPILGVHNVTFAYEGQKPLFV-KAD 697
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195048050|ref|XP_001992461.1| GH24766 [Drosophila grimshawi] gi|193893302|gb|EDV92168.1| GH24766 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 315/454 (69%), Positives = 377/454 (83%), Gaps = 8/454 (1%)
Query: 38 DEILSAPSKET--PKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKA---SKDKKLTH 92
+E+ AP +E+ KV + + + VP VE E+A P +E ++A SK+KK++H
Sbjct: 267 EEVPPAPIEESLSAKVATVTLNEVEPVPEPTAVE-ELATTPISEESSEAFAESKEKKMSH 325
Query: 93 KEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENF 152
KEKKK KK+ E+++Q+E +TKKGG G S+L +NFT+SQ++K+ GQ AALE+AVDIK+ENF
Sbjct: 326 KEKKKQKKEQEYERQIELMTKKGGTGQSDLDNNFTMSQVQKSAGQQAALEHAVDIKIENF 385
Query: 153 SISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212
+ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA+ +PPNID+L CEQEV
Sbjct: 386 TISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIATHAFAIPPNIDVLLCEQEV 445
Query: 213 VADDLTAVESVLKADVKRTELLAECAKLEA--ADFSSEQQEQLKEIYEELKAIGADSAEP 270
VA D T++ES+L+ADVKRT++L + +LE A+ QE+L + + ELKAIGA SAE
Sbjct: 446 VATDKTSIESILEADVKRTQMLKKSEELEKQFANGDMSVQEELNDTFAELKAIGAYSAEA 505
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
RARRILAGLGFS+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIW
Sbjct: 506 RARRILAGLGFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIW 565
Query: 331 LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMK 390
LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ+KL+YYKGNYSMFKKMY QK +E +K
Sbjct: 566 LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQKKLHYYKGNYSMFKKMYVQKRREMIK 625
Query: 391 EFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREY 450
E+EKQEKRI+ELKAHGQSKK AEKK KE LTRKQEKNKSK QK DED GP EL+ +P+EY
Sbjct: 626 EYEKQEKRIRELKAHGQSKKAAEKKQKETLTRKQEKNKSKQQKQDEDDGPQELLARPKEY 685
Query: 451 VVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLM 484
+VKF FP+P LQPPILG+HNVTFA++G KPL +
Sbjct: 686 IVKFRFPEPSQLQPPILGVHNVTFAFDGQKPLFI 719
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195394095|ref|XP_002055681.1| GJ18654 [Drosophila virilis] gi|194150191|gb|EDW65882.1| GJ18654 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/387 (74%), Positives = 338/387 (87%), Gaps = 3/387 (0%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE+AVDIK+ENF+ISAKGNDLFV
Sbjct: 322 YERQMELMTKKGGAGHSDLDNNFTMSQVQKSAGQQAALEHAVDIKIENFTISAKGNDLFV 381
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+E++
Sbjct: 382 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAIETI 441
Query: 224 LKADVKRTELLAECAKLEA--ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281
L+ADVKRT++L + +LE AD QE+L + + ELKAIGA SAE RARRILAGLGF
Sbjct: 442 LEADVKRTKMLKKSEELEKQFADGDMSVQEELNDTFAELKAIGAYSAEARARRILAGLGF 501
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKT 341
S+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWKKT
Sbjct: 502 SKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKT 561
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKE 401
LLIVSHDQSFLDNVCNEIIHLDQ+KL+YYKGNYSMFKKMY QK +E +KE+EKQEKR++E
Sbjct: 562 LLIVSHDQSFLDNVCNEIIHLDQKKLFYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRE 621
Query: 402 LKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPP 461
LKAHGQSKK AEKK KE LTRKQEKNK+K QK +ED GP EL+ +P+EY+VKF FP+P
Sbjct: 622 LKAHGQSKKAAEKKQKESLTRKQEKNKTKTQKQEEDDGPQELLARPKEYIVKFRFPEPSQ 681
Query: 462 LQPPILGLHNVTFAYEGMKPLLMSKAD 488
LQPPILG+HNVTFA+ G KPL + KAD
Sbjct: 682 LQPPILGVHNVTFAFPGQKPLFV-KAD 707
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194767886|ref|XP_001966045.1| GF19482 [Drosophila ananassae] gi|190622930|gb|EDV38454.1| GF19482 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/389 (74%), Positives = 338/389 (86%), Gaps = 7/389 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE+AVDIK+ENF+ISAKGNDLFV
Sbjct: 319 YERQMELMTKKGGAGHSDLDNNFTMSQVQKSAGQQAALEHAVDIKIENFTISAKGNDLFV 378
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+E++
Sbjct: 379 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAIETI 438
Query: 224 LKADVKRTELLAECAKLE----AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
L+ADV+RT++L + +LE A D S QE+L + + ELKAIGA SAE RARRILAGL
Sbjct: 439 LEADVRRTQMLKKADELEKQFAAGDLSV--QEELNDTFAELKAIGAYSAEARARRILAGL 496
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
GFS+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWK
Sbjct: 497 GFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 556
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRI 399
KTLLIVSHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKMY QK +E +KE+EKQEKR+
Sbjct: 557 KTLLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRL 616
Query: 400 KELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459
+ELKAHGQSKK AEKK KE LTRKQEKNKSK QK DED+GP EL+ +P+EY+VKF FP+P
Sbjct: 617 RELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEP 676
Query: 460 PPLQPPILGLHNVTFAYEGMKPLLMSKAD 488
LQPPILG+HNVTFA+ KPL + KAD
Sbjct: 677 SQLQPPILGVHNVTFAFPNQKPLFI-KAD 704
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24641342|ref|NP_572736.1| CG1703 [Drosophila melanogaster] gi|7292671|gb|AAF48069.1| CG1703 [Drosophila melanogaster] gi|60678119|gb|AAX33566.1| LD04461p [Drosophila melanogaster] gi|220950440|gb|ACL87763.1| CG1703-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 286/385 (74%), Positives = 333/385 (86%), Gaps = 6/385 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE AVDIK+ENF+ISAKGNDLFV
Sbjct: 309 YERQMELMTKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQAVDIKIENFTISAKGNDLFV 368
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+ ++
Sbjct: 369 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAINTI 428
Query: 224 LKADVKRTELLAECAKLE----AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
L+ADV+RTE+L + +LE A D + QE+L + + ELKAIGA SAE RARRILAGL
Sbjct: 429 LEADVRRTEMLKKADELEKQFVAGDLTV--QEELNDTFAELKAIGAYSAEARARRILAGL 486
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
GFS+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWK
Sbjct: 487 GFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 546
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRI 399
KTLLIVSHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKMY QK +E +KE+EKQEKR+
Sbjct: 547 KTLLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRL 606
Query: 400 KELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459
+ELKAHGQSKK AEKK KE LTRKQEKNKSK QK DED+GP EL+ +P+EY+VKF FP+P
Sbjct: 607 RELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEP 666
Query: 460 PPLQPPILGLHNVTFAYEGMKPLLM 484
LQPPILG+HNVTFA+ KPL +
Sbjct: 667 SQLQPPILGVHNVTFAFPSQKPLFI 691
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195355244|ref|XP_002044102.1| GM13097 [Drosophila sechellia] gi|194129371|gb|EDW51414.1| GM13097 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 285/385 (74%), Positives = 332/385 (86%), Gaps = 6/385 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE AVDIK+ENF+ISAKGNDLFV
Sbjct: 310 YERQMEVMTKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQAVDIKIENFTISAKGNDLFV 369
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+ ++
Sbjct: 370 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAINTI 429
Query: 224 LKADVKRTELLAECAKLE----AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
L+ADV+RTE+L + +LE D + QE+L + + ELKAIGA SAE RARRILAGL
Sbjct: 430 LEADVRRTEMLKKADELEKQFVGGDLTV--QEELNDTFAELKAIGAYSAEARARRILAGL 487
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
GFS+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWK
Sbjct: 488 GFSKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 547
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRI 399
KTLLIVSHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKMY QK +E +KE+EKQEKR+
Sbjct: 548 KTLLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRL 607
Query: 400 KELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459
+ELKAHGQSKK AEKK KE LTRKQEKNKSK QK DED+GP EL+ +P+EY+VKF FP+P
Sbjct: 608 RELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEP 667
Query: 460 PPLQPPILGLHNVTFAYEGMKPLLM 484
LQPPILG+HNVTFA+ KPL +
Sbjct: 668 SQLQPPILGVHNVTFAFPSQKPLFI 692
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195448447|ref|XP_002071661.1| GK25023 [Drosophila willistoni] gi|194167746|gb|EDW82647.1| GK25023 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/387 (74%), Positives = 337/387 (87%), Gaps = 3/387 (0%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE+AVDIK+ENF+ISAKGNDLFV
Sbjct: 298 YERQMELMTKKGGSGHSDLDNNFTMSQVQKSAGQQAALEHAVDIKIENFTISAKGNDLFV 357
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA++++
Sbjct: 358 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAIQTI 417
Query: 224 LKADVKRTELLAECAKLEA--ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281
L+ADV+RTELL + LE A+ QE+L + + ELKAIGA SAE RARRILAGLGF
Sbjct: 418 LEADVRRTELLKKSEDLEKQFANGDLTVQEELNDTFAELKAIGAYSAEARARRILAGLGF 477
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKT 341
S+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWKKT
Sbjct: 478 SKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKT 537
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKE 401
LLIVSHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKM+ QK +E +KE+EKQEKR++E
Sbjct: 538 LLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMFVQKRREMIKEYEKQEKRLRE 597
Query: 402 LKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPP 461
LKAHGQSKK AEKK KE LTRKQEKNKSK QK DED+GP EL+ +P+EY+VKF FP+P
Sbjct: 598 LKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQ 657
Query: 462 LQPPILGLHNVTFAYEGMKPLLMSKAD 488
LQPPILG+HNVTF++ G KPL + KAD
Sbjct: 658 LQPPILGVHNVTFSFPGQKPLFI-KAD 683
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|125983764|ref|XP_001355647.1| GA14282 [Drosophila pseudoobscura pseudoobscura] gi|54643963|gb|EAL32706.1| GA14282 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/387 (74%), Positives = 337/387 (87%), Gaps = 4/387 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
+++Q+E +TKKGG GHS+L +NFT+SQ++KT GQ AALE+AVDIK+ENF+ISAKGNDLFV
Sbjct: 333 YERQMELMTKKGGAGHSDLDNNFTMSQVQKTAGQQAALEHAVDIKIENFTISAKGNDLFV 392
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+E++
Sbjct: 393 NANLLIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAIETI 452
Query: 224 LKADVKRTELLAECAKLEA--ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281
L+AD +RT+ L + +LE A+ QE+L +I+ ELKAIGA SAE RARRILAGLGF
Sbjct: 453 LEADTRRTQTLKKSEELEKQFANGDMSVQEELNDIFAELKAIGAYSAEARARRILAGLGF 512
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKT 341
S+ MQDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWKKT
Sbjct: 513 SKEMQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKT 572
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKE 401
LLIVSHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKMY QK +E +KE+EKQEKR++E
Sbjct: 573 LLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRE 632
Query: 402 LKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPP 461
LKAHGQSKK AEKK KE LTRKQEKNK+K QK DED+GP EL+ +P+EY+VKF FP+P
Sbjct: 633 LKAHGQSKKAAEKKQKETLTRKQEKNKTKQQK-DEDEGPQELLARPKEYIVKFRFPEPSQ 691
Query: 462 LQPPILGLHNVTFAYEGMKPLLMSKAD 488
LQPPILG+HN+TFA+ G KPL + KAD
Sbjct: 692 LQPPILGVHNITFAFAGHKPLFI-KAD 717
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170038583|ref|XP_001847128.1| ATP-binding cassette sub-family F member 1 [Culex quinquefasciatus] gi|167882327|gb|EDS45710.1| ATP-binding cassette sub-family F member 1 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/387 (75%), Positives = 338/387 (87%), Gaps = 7/387 (1%)
Query: 104 FQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV 163
FQKQVE +TKKGGQGHS+L NFT+SQ K+G Q +E+AVDIK+ENF+ISAKGNDLFV
Sbjct: 306 FQKQVEAMTKKGGQGHSDLDSNFTMSQALKSGNQSKHMEHAVDIKIENFTISAKGNDLFV 365
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
NANLLIA GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVAD+ +AV++V
Sbjct: 366 NANLLIAQGRRYGLVGPNGHGKTTLLRHIANRVFAIPPNIDVLLCEQEVVADENSAVDTV 425
Query: 224 LKADVKRTELLAECAKLE----AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
LKADVKRT LLAEC KLE + S Q++L+E+Y ELKAIGADSAEPRARRILAGL
Sbjct: 426 LKADVKRTALLAECKKLEDEIEGGNIS--LQDKLQEVYNELKAIGADSAEPRARRILAGL 483
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
GFSR+MQ+RAT +FSGGWRMRVSLARAL++EPTLL+LDEPTNHLDLNAVIWLDNYLQ WK
Sbjct: 484 GFSRSMQNRATNSFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQTWK 543
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRI 399
KTLLIVSHDQSFLDNVCNE+IHLD +KLYYYKGNYSMFKKM+ QK +E +KE+EKQEKRI
Sbjct: 544 KTLLIVSHDQSFLDNVCNEVIHLDNKKLYYYKGNYSMFKKMHVQKRREMIKEYEKQEKRI 603
Query: 400 KELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKA-DEDQGPTELIQKPREYVVKFSFPD 458
K+LKAHGQSKK AEKK K+ LTRKQEK K K QKA D+D+GP EL+ KP++Y+VKFSFPD
Sbjct: 604 KDLKAHGQSKKAAEKKQKDNLTRKQEKGKGKAQKANDDDEGPVELLAKPKDYIVKFSFPD 663
Query: 459 PPPLQPPILGLHNVTFAYEGMKPLLMS 485
PPPLQPP+LGL+NV F + KPL ++
Sbjct: 664 PPPLQPPVLGLYNVNFNFPNQKPLFIN 690
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| FB|FBgn0030321 | 901 | CG1703 [Drosophila melanogaste | 0.693 | 0.421 | 0.718 | 3.2e-145 | |
| ZFIN|ZDB-GENE-050517-31 | 877 | abcf1 "ATP-binding cassette, s | 0.651 | 0.407 | 0.646 | 4.7e-119 | |
| RGD|620286 | 839 | Abcf1 "ATP-binding cassette, s | 0.651 | 0.425 | 0.634 | 4.2e-118 | |
| UNIPROTKB|Q6MG08 | 839 | Abcf1 "ATP-binding cassette su | 0.651 | 0.425 | 0.634 | 4.2e-118 | |
| MGI|MGI:1351658 | 837 | Abcf1 "ATP-binding cassette, s | 0.651 | 0.426 | 0.631 | 1.1e-117 | |
| UNIPROTKB|E1BGH0 | 845 | ABCF1 "Uncharacterized protein | 0.651 | 0.422 | 0.623 | 1.3e-116 | |
| UNIPROTKB|Q8NE71 | 845 | ABCF1 "ATP-binding cassette su | 0.651 | 0.422 | 0.620 | 2.1e-116 | |
| UNIPROTKB|K7GL02 | 842 | ABCF1 "ATP-binding cassette, s | 0.651 | 0.423 | 0.620 | 2.1e-116 | |
| UNIPROTKB|Q767L0 | 807 | ABCF1 "ATP-binding cassette su | 0.651 | 0.442 | 0.620 | 2.1e-116 | |
| UNIPROTKB|H0YGW7 | 596 | ABCF1 "ATP-binding cassette su | 0.651 | 0.598 | 0.620 | 2.1e-116 |
| FB|FBgn0030321 CG1703 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 275/383 (71%), Positives = 316/383 (82%)
Query: 108 VETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANL 167
+E +TKKGG GHS+L +NFT+SQ++K+ GQ AALE AVDIK+ENF+ISAKGNDLFVNANL
Sbjct: 313 MELMTKKGGAGHSDLDNNFTMSQVQKSAGQKAALEQAVDIKIENFTISAKGNDLFVNANL 372
Query: 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227
LIA+GRRYGLVGPNGHGKTTLLRHIA+R +PPNID+L CEQEVVA D TA+ ++L+AD
Sbjct: 373 LIAHGRRYGLVGPNGHGKTTLLRHIATRAFAIPPNIDVLLCEQEVVATDKTAINTILEAD 432
Query: 228 VKRTXXXXXXXXXXXXDFSSEQ--QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
V+RT + + QE+L + + ELKAIGA SAE RARRILAGLGFS+ M
Sbjct: 433 VRRTEMLKKADELEKQFVAGDLTVQEELNDTFAELKAIGAYSAEARARRILAGLGFSKEM 492
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV 345
QDR T FSGGWRMRVSLARALY+EPTLL+LDEPTNHLDLNAVIWLDNYLQGWKKTLLIV
Sbjct: 493 QDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV 552
Query: 346 SHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAH 405
SHDQSFLDNVCNEIIHLDQ+KL YYKGNYSMFKKMY QK +E +KE+EKQEKR++ELKAH
Sbjct: 553 SHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKAH 612
Query: 406 GQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXX 465
GQSKK AEKK KE LTRKQEKNKSK QK DED+GP EL+ +P+EY+VKF F
Sbjct: 613 GQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQPP 672
Query: 466 ILGLHNVTFAYEGMKPLLMSKAD 488
ILG+HNVTFA+ KPL + K D
Sbjct: 673 ILGVHNVTFAFPSQKPLFI-KVD 694
|
|
| ZFIN|ZDB-GENE-050517-31 abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 234/362 (64%), Positives = 280/362 (77%)
Query: 123 GDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNG 182
GD F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+LLI GRRYGLVGPNG
Sbjct: 314 GD-FSVSQAELSSRQ-AMLENASDIKLERFSISAHGKELFVNADLLIVAGRRYGLVGPNG 371
Query: 183 HGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXX 242
GKTTLL+HIA+R L +PPNID+L CEQEVVADD AV++VLKAD +R
Sbjct: 372 KGKTTLLKHIANRALSIPPNIDVLLCEQEVVADDTPAVQAVLKADTRRLKLLEEERQLQS 431
Query: 243 XDFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
+ E+L ++YEEL+AIGA +AE +ARRILAGL F+ MQ+R TK FSGGWRMR
Sbjct: 432 RLEKGDDSVSERLDKVYEELRAIGAAAAEAKARRILAGLSFTPEMQNRPTKKFSGGWRMR 491
Query: 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEII 360
VSLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQ WKKTLLIVSHDQSFLD+VC +II
Sbjct: 492 VSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQSWKKTLLIVSHDQSFLDDVCTDII 551
Query: 361 HLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVL 420
HLD QKLYYY+GNY FKKMY QK KE K+++KQEK++K+LKA G+S KQAEK+TKE L
Sbjct: 552 HLDNQKLYYYRGNYLTFKKMYIQKQKELQKQYDKQEKKLKDLKAGGKSTKQAEKQTKEAL 611
Query: 421 TRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMK 480
TRKQ+K K K Q+ +E TEL+++P+EY VKF+F ILGLH+V F YEG K
Sbjct: 612 TRKQQKGKKKSQE-EESHEATELLKRPKEYTVKFTFPNPPPLSPPILGLHSVDFGYEGQK 670
Query: 481 PL 482
PL
Sbjct: 671 PL 672
|
|
| RGD|620286 Abcf1 "ATP-binding cassette, subfamily F (GCN20), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 229/361 (63%), Positives = 281/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 276 NDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 334
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 335 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEEKRLQGQ 394
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 395 LEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 454
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 455 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 514
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKEVLT
Sbjct: 515 LDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEVLT 574
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q +E Q P EL+++PREY V+F+F +LGLH VTF YEG KP
Sbjct: 575 RKQQKCRRKNQD-EESQDPPELLKRPREYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 633
Query: 482 L 482
L
Sbjct: 634 L 634
|
|
| UNIPROTKB|Q6MG08 Abcf1 "ATP-binding cassette sub-family F member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 229/361 (63%), Positives = 281/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 276 NDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 334
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 335 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEEKRLQGQ 394
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 395 LEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 454
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 455 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 514
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKEVLT
Sbjct: 515 LDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEVLT 574
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q +E Q P EL+++PREY V+F+F +LGLH VTF YEG KP
Sbjct: 575 RKQQKCRRKNQD-EESQDPPELLKRPREYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 633
Query: 482 L 482
L
Sbjct: 634 L 634
|
|
| MGI|MGI:1351658 Abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 228/361 (63%), Positives = 281/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 274 NDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 332
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 333 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEERRLQGQ 392
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 393 LEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 452
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 453 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 512
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKEVLT
Sbjct: 513 LDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEVLT 572
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q +E Q P EL+++P+EY V+F+F +LGLH VTF YEG KP
Sbjct: 573 RKQQKCRRKNQD-EESQEPPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 631
Query: 482 L 482
L
Sbjct: 632 L 632
|
|
| UNIPROTKB|E1BGH0 ABCF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 225/361 (62%), Positives = 279/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 282 NDFSVSQAEVSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 340
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 341 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQ 400
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 401 LEQGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 460
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 461 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 520
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKE LT
Sbjct: 521 LDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALT 580
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q + + P EL+++P+EY V+F+F +LGLH VTF YEG KP
Sbjct: 581 RKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 639
Query: 482 L 482
L
Sbjct: 640 L 640
|
|
| UNIPROTKB|Q8NE71 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 224/361 (62%), Positives = 279/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 282 NDFSVSQAEMSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 340
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 341 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQ 400
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 401 LEQGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 460
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 461 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 520
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKE LT
Sbjct: 521 LDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALT 580
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q + + P EL+++P+EY V+F+F +LGLH VTF Y+G KP
Sbjct: 581 RKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYQGQKP 639
Query: 482 L 482
L
Sbjct: 640 L 640
|
|
| UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 224/361 (62%), Positives = 279/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 279 NDFSVSQAEMSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 337
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 338 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQ 397
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ ++L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 398 LEQGDDTAADRLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 457
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 458 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 517
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKE LT
Sbjct: 518 LDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALT 577
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q + + P EL+++P+EY V+F+F +LGLH VTF YEG KP
Sbjct: 578 RKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 636
Query: 482 L 482
L
Sbjct: 637 L 637
|
|
| UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 224/361 (62%), Positives = 279/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 244 NDFSVSQAEMSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 302
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 303 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQ 362
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ ++L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 363 LEQGDDTAADRLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 422
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 423 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 482
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKE LT
Sbjct: 483 LDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALT 542
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q + + P EL+++P+EY V+F+F +LGLH VTF YEG KP
Sbjct: 543 RKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKP 601
Query: 482 L 482
L
Sbjct: 602 L 602
|
|
| UNIPROTKB|H0YGW7 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 224/361 (62%), Positives = 279/361 (77%)
Query: 124 DNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGH 183
++F++SQ E + Q A LENA DIK+E FSISA G +LFVNA+L I GRRYGLVGPNG
Sbjct: 33 NDFSVSQAEMSSRQ-AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGK 91
Query: 184 GKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTXXXXXXXXXXXX 243
GKTTLL+HIA+R L +PPNID+L CEQEVVAD+ AV++VL+AD KR
Sbjct: 92 GKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEEERRLQGQ 151
Query: 244 DFSSEQQ--EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
+ E+L+++YEEL+A GA +AE +ARRILAGLGF MQ+R T+ FSGGWRMRV
Sbjct: 152 LEQGDDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRV 211
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
SLARAL++EPTLL+LDEPTNHLDLNAVIWL+NYLQGW+KTLLIVSHDQ FLD+VC +IIH
Sbjct: 212 SLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIH 271
Query: 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLT 421
LD Q+L+YY+GNY FKKMY QK KE +K++EKQEK++KELKA G+S KQAEK+TKE LT
Sbjct: 272 LDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALT 331
Query: 422 RKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFXXXXXXXXXILGLHNVTFAYEGMKP 481
RKQ+K + K Q + + P EL+++P+EY V+F+F +LGLH VTF Y+G KP
Sbjct: 332 RKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYQGQKP 390
Query: 482 L 482
L
Sbjct: 391 L 391
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q767L0 | ABCF1_PIG | No assigned EC number | 0.6227 | 0.6970 | 0.4733 | yes | N/A |
| Q7YR37 | ABCF1_PANTR | No assigned EC number | 0.6227 | 0.6970 | 0.4733 | yes | N/A |
| Q6P542 | ABCF1_MOUSE | No assigned EC number | 0.6373 | 0.6806 | 0.4456 | yes | N/A |
| Q6MG08 | ABCF1_RAT | No assigned EC number | 0.6398 | 0.6806 | 0.4445 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 548 | |||
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-95 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-93 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-53 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-38 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-36 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-35 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-35 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-30 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-21 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-19 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-19 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-17 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-17 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-16 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-16 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-16 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-16 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-15 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-14 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-14 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-14 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-13 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-13 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-13 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-12 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-11 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-11 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-11 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-10 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-09 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 2e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-09 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-08 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-07 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-07 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-06 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-06 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-06 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 7e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-05 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 6e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 7e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-04 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.001 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.001 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.001 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.003 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.004 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.004 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.004 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (784), Expect = 1e-95
Identities = 179/467 (38%), Positives = 253/467 (54%), Gaps = 57/467 (12%)
Query: 46 KETPKVDDIPVP-------ASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHKEKKKM 98
K P V + P EV K+ PE P + E A +++ K K++
Sbjct: 86 KPKPSVRSLAAPVRMSDGMDDSEVAKKK---PEPDDGPLLSERDLAKIERR---KRKEER 139
Query: 99 KKDMEFQKQV-ETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAK 157
++++++Q V E K G + G A++ DI +ENFSIS
Sbjct: 140 QREVQYQAHVAEMEAAKAGMP--------GVYVNHDGNGGGPAIK---DIHMENFSISVG 188
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADD 216
G DL V+A++ +A GR YGLVG NG GKTT LR++A + +P N IL+ EQEVV DD
Sbjct: 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQ--------------------EQLKEI 256
TA++ VL D++RT+LL E A+L A E + ++L+EI
Sbjct: 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEI 308
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
Y+ L+ I A +AE RA ILAGL F+ MQ +ATK FSGGWRMR++LARAL+IEP LLLL
Sbjct: 309 YKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376
DEPTNHLDL+AV+WL+ YL W KT ++VSH + FL+ V +I+HL QKL YKG+Y
Sbjct: 369 DEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT 428
Query: 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436
F++ ++ K + K FE E+ ++A + K+ V +R KA +
Sbjct: 429 FERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRI---------KALD 479
Query: 437 DQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 483
G + + +Y +F PD P PPI+ + +F Y G PLL
Sbjct: 480 RLGHVDAVVNDPDYKFEFPTPDDRP-GPPIISFSDASFGYPG-GPLL 524
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 294 bits (756), Expect = 2e-93
Identities = 124/347 (35%), Positives = 184/347 (53%), Gaps = 20/347 (5%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL------KV 199
I +EN S++ L N +L + G R GLVG NG GK+TLL+ +A
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 200 PPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE 258
P + + Y QE D T ++ V++ + ELLAE + A + E L E+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL-ADPDDELLAELEA 121
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
L+ + + E RA L GLGF DR + SGGWR RV+LARAL EP LLLLDE
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378
PTNHLDL ++ WL++YL+ + T+++VSHD+ FLDNV I+ LD+ KL YKGNYS +
Sbjct: 180 PTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239
Query: 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
+ A++ ++ +EKQ+K + + + + K A K K K KS++++ ++ +
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK--------KAKSRIKRLEKLE 291
Query: 439 GPTELIQKP-REYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLL 483
+ + F FP P L +L NV+ Y+G + LL
Sbjct: 292 ARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLL 338
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 7e-53
Identities = 119/327 (36%), Positives = 179/327 (54%), Gaps = 31/327 (9%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLKVPPNIDILYCEQEVVA 214
L NA I G++ GLVG NG GK+TLL + + P N + + QE A
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
A+E V+ D + +L A+ L A+ ++ + I+ +L AI A + RA
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQ---LHDANERNDGH-AIATIHGKLDAIDAWTIRSRAAS 131
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+L GLGFS +R +FSGGWRMR++LA+AL LLLLDEPTNHLDL+AVIWL+ +
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
Query: 335 LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEK 394
L+ ++ TL+++SHD+ FLD + ++IIH++QQ L+ Y GNYS F+ A + ++ +E
Sbjct: 192 LKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYES 251
Query: 395 QEKRIKELKAHGQS-----KKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPRE 449
Q++R+ AH QS + +A K KQ +++ K+ + E P + P
Sbjct: 252 QQERV----AHLQSYIDRFRAKATKA-------KQAQSRIKMLERMELIAPAH-VDNP-- 297
Query: 450 YVVKFSFPDPPPLQPPILGLHNVTFAY 476
FSF P L P+L + V+ Y
Sbjct: 298 --FHFSFRAPESLPNPLLKMEKVSAGY 322
|
Length = 638 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 5e-38
Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 35/290 (12%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVAD-DLTAVESV- 223
G + G++G NG GK+TLLR +A D + P I + Y QE D T E+V
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE 90
Query: 224 -----LKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRAR--- 273
+K + R ++ AD + +Q +L+EI + A D A
Sbjct: 91 EGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
R D SGG R RV+L R L +P +LLLDEPTNHLD +V WL+
Sbjct: 151 RCPPW--------DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFE 393
+LQ + T++ V+HD+ FLDNV I+ LD+ + ++GNYS + ++ ++R+++ E
Sbjct: 203 HLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS----SWLEQKEKRLEQEE 258
Query: 394 KQE----KRIK-ELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
K+E K +K EL+ S K + K+K L R +E + QK +E
Sbjct: 259 KEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNETA 308
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-36
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFL 352
SGG +MR++LA+ L P LLLLDEPTNHLDL ++ L+ L+ + T+++VSHD+ FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 353 DNVCNEIIHLDQQK 366
D V +II L+ K
Sbjct: 131 DQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 98/290 (33%), Positives = 141/290 (48%), Gaps = 43/290 (14%)
Query: 176 GLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVAD-DLTAVESV----- 223
G++G NG GK+TLLR +A D + P I + Y QE D + T E+V
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVA 96
Query: 224 -LKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
+KA + R + ADF + +Q +L+EI + A DS
Sbjct: 97 EVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQ------------ 144
Query: 281 FSRAMQ-------DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
AM D SGG R RV+L R L +P +LLLDEPTNHLD +V WL+
Sbjct: 145 LEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ 204
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFE 393
+L + T++ V+HD+ FLDNV I+ LD+ + ++GNYS + ++ +R+ + E
Sbjct: 205 FLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS----SWLEQKAKRLAQEE 260
Query: 394 KQE-KRIKELKAH----GQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQ 438
KQE R K LK QS K + K+K L R +E + QK +E
Sbjct: 261 KQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETN 310
|
Length = 556 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-35
Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 43/240 (17%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV 199
++ EN S G L + + I G R +VGPNG GK+TLL+ +A S +KV
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 200 PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE 259
+ I Y +Q D+L ++VL EE
Sbjct: 382 GETVKIGYFDQHR--DELDPDKTVL---------------------------------EE 406
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
L D E R L GF+ Q++ SGG + R+ LA+ L P LLLLDEP
Sbjct: 407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466
Query: 320 TNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
TNHLD+ ++ L+ L ++ T+L+VSHD+ FLD V I ++ K+ ++G Y + +
Sbjct: 467 TNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 88/280 (31%), Positives = 148/280 (52%), Gaps = 27/280 (9%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-------VPPNIDILYCEQEVV 213
LF N ++ G RYGL+G NG GK+T ++ I DL+ + PN + Q+
Sbjct: 16 LFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLEPSAGNVSLDPNERLGKLRQDQF 74
Query: 214 A-DDLTAVESVLKADVKRTELLAE----CAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
A ++ T +++V+ + E+ E A E ++ + L+ + E+ +A
Sbjct: 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEM---DGYTA 131
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E RA +L G+G + GW++RV LA+AL+ P +LLLDEPTN+LD+N +
Sbjct: 132 EARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA-QKSKE 387
WL++ L T++I+SHD+ FL++VC + LD +L Y GNY + M A +++E
Sbjct: 192 RWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY--MTAATQARE 249
Query: 388 R-MKEFEKQEKRIKELK-------AHGQSKKQAEKKTKEV 419
R + + K++ +I EL+ A+ KQA + K++
Sbjct: 250 RLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 29/235 (12%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------SRDLKV------PPN 202
L NA L I + R LVG NG GK+TL++ + +DL V PP
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
++ + VA+ + LK + L+ D S + +L ++ E+L
Sbjct: 78 -NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVET-------DPSEKNLNELAKLQEQLDH 129
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
E R +LA LG D A + SGGW + +L RAL P +LLLDEPTNH
Sbjct: 130 HNLWQLENRINEVLAQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNH 186
Query: 323 LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
LD+ + WL+ +L+ ++ +++ +SHD+SF+ N+ I+ LD+ KL Y GNY +
Sbjct: 187 LDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
|
Length = 635 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-23
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 148 KVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+++N S S + +L I G +VGPNG GK+TLLR + L P + ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG--LLGPTSGEV 58
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADF-SSEQQEQLKEIYEELKAIG 264
L +++ L + ++ L+ F + + Q + EE+ A G
Sbjct: 59 LVDGKDLTKLSLKEL-------RRKVGLV----------FQNPDDQFFGPTVEEEV-AFG 100
Query: 265 -------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
+ E R L +G ++DR+ SGG + RV++A L ++P +LLLD
Sbjct: 101 LENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 318 EPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
EPT LD L L+ K KT++IV+HD L + + +I L+ K
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA------------------SRDLKVPPNIDI 205
+ + G +GL+GPNG GKTTLL+ +A KV I
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI-G 81
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
++ + +LT E++ E + L +
Sbjct: 82 YVPQEPSLYPELTVRENL-------------------------------EFFARLYGLSK 110
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ AE R +L G + + SGG + R+S+A AL +P LL+LDEPT+ LD
Sbjct: 111 EEAEERIEELLELFGLEDKANKKV-RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 326 NAVI----WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381
+ L + T+L+ +H + +C+ +I L+ K+ G K+ +
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE-GTPEELKEKF 228
Query: 382 AQKSKERMKEFEKQEKRIKE 401
K ++ + + E
Sbjct: 229 GGKGVIELEPERLELAELLE 248
|
Length = 293 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 3e-22
Identities = 66/231 (28%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 147 IKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I+ EN S G + +L I G R L+GPNG GK+TLL+ + L P
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPT---- 57
Query: 206 LYCEQEVVADDL-TAVESVLKADVKRTELLAECAKLEAAD--FSSEQQEQLKEIYEELKA 262
EV+ D L T+ E L ++ L+ + D E E
Sbjct: 58 ---SGEVLVDGLDTSSEKSLLELRQKVGLV-----FQNPDDQLFGPTVEDEVAFGLENLG 109
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ + E R L +G + DR N SGG + RV++A L + P +LLLDEPT
Sbjct: 110 LPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168
Query: 323 LDLNAVIW----LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
LD L + KT++IV+HD + + ++ LD K+
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 5e-22
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 52/227 (22%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
+VEN S+ G + + +L I G G++GPNG GK+TLL+ +A LK P + +IL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLK-PSSGEILL 58
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+++ A + EL + A + A L+ +G
Sbjct: 59 DGKDL-------------ASLSPKELARKIAYVPQA----------------LELLGLAH 89
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
LA DR SGG R RV LARAL EP +LLLDEPT+HLD+
Sbjct: 90 --------LA---------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
Query: 328 VIWLDNYLQGWK----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
I L L+ KT+++V HD + + +I L ++
Sbjct: 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 3e-21
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 56/225 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N S + + +L I G L+GP+G GK+TLLR IA L+ P + I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG--LEEPDSGSI- 57
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEELKAI 263
+ E DLT +E L +R ++ F Q L + E +
Sbjct: 58 LIDGE----DLTDLEDELPPLRRRIGMV----------F---QDFALFPHLTVLENI--- 97
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
LG S GG + RV+LARAL ++P +LLLDEPT+ L
Sbjct: 98 --------------ALGLS------------GGQQQRVALARALAMDPDVLLLDEPTSAL 131
Query: 324 DLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
D + L T+++V+HD + + ++ L
Sbjct: 132 DPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-21
Identities = 70/223 (31%), Positives = 98/223 (43%), Gaps = 17/223 (7%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+++ S SA G + ++ G GL+GPNG GK+TLLR +A + P+
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG---ALRPDAGT 57
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
+ ++ DL + +A R L E A + L I
Sbjct: 58 V----DLAGVDLHGLSRRARA---RRVALVEQDSDTAVPLTVRDVVALGRI-PHRSLWAG 109
Query: 266 DSAEPRA--RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
DS A R LA S + DR SGG R RV +ARAL EP LLLLDEPTNHL
Sbjct: 110 DSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHL 168
Query: 324 DLNA---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
D+ A + L L T++ HD + + C+ ++ LD
Sbjct: 169 DVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLD 211
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 5e-21
Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 52/245 (21%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLR-----------H 191
+ V N SI G +A +L I G G+VG +G GK+TL R
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 192 IASRDLKVPP--NIDILYCE-QEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248
I + P Y Q V D +++ V R
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT--VGRI----------------- 104
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+ E L+ G ++ R +L +G + DR SGG R R+++ARAL
Sbjct: 105 -------LSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157
Query: 309 IEPTLLLLDEPTNHLD--LNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHL 362
EP LL+LDEPT+ LD + A I N L KK T L +SHD + ++++C+ I +
Sbjct: 158 PEPKLLILDEPTSALDVSVQAQIL--NLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215
Query: 363 DQQKL 367
D ++
Sbjct: 216 DNGQI 220
|
Length = 252 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-21
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 41/238 (17%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRD 196
NA++ VEN + LF N NLL+ G R ++G NG GKTTLLR + S
Sbjct: 318 NALE--VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 197 LKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256
+K N +I Y Q+ A DF E L +
Sbjct: 376 VKWSENANIGYYAQD-----------------------------HAYDF--ENDLTLFDW 404
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
+ + G D E R L L FS+ ++ K SGG + R+ + + +P +L++
Sbjct: 405 MSQWRQEGDD--EQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374
DEPTNH+D+ ++ L+ L+ ++ TL+ VSHD+ F+ ++ II + + + G Y
Sbjct: 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTY 520
|
Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 7e-20
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ 349
SGG R RV+LARAL + P LLLLDEPT+ LD + L L+ + T++IV+HD
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 350 SFLDNVCNEIIHLDQQK 366
+ + +I L K
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 9e-20
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+K + + + + + +L + G YG +GPNG GKTT ++ I L P + +I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG--LIKPDSGEIT 58
Query: 207 YCEQEVV--ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ + + L + ++++A L A E L+ L A
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTAR--------------ENLR-----LLARL 99
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ R +L +G + + K FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 100 LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
Query: 325 LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + L + + T+LI SH S + V + I +++ KL
Sbjct: 159 PDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-19
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 49/279 (17%)
Query: 122 LGDNFTISQMEKTGGQLAALEN-AVDIKVEN--FSISAKGNDLFVNANLLIANGRRYGLV 178
LGD ++ L L +I+ EN F + + +L I G + +V
Sbjct: 446 LGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIV 505
Query: 179 GPNGHGKTTLLRHIASRDLKVPP-------NIDILYCEQEVVADDLTAV--ESVLKADVK 229
G +G GK+TLL+ + L P +D+ + + + V + L +
Sbjct: 506 GRSGSGKSTLLKLLLG--LYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563
Query: 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD---SAEPRARRILAGLGFSRAMQ 286
R E +A + +EI E + GA P +G+ +
Sbjct: 564 R-ENIALGN----------PEATDEEIIEAAQLAGAHEFIENLP--------MGYDTPVG 604
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQ-GWKKTLLI 344
+ N SGG R R++LARAL +P +LLLDE T+ LD I L N LQ +T++I
Sbjct: 605 EGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663
Query: 345 VSHDQSFLDNVCNEIIHLDQ---------QKLYYYKGNY 374
++H S + + + II LDQ ++L G Y
Sbjct: 664 IAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQGGLY 701
|
Length = 709 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 42/261 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVP 200
I+ EN S L + + + G G++GPNG GK+TL R I ++ +K+
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382
Query: 201 PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
+ + Y +Q D L ++V + EI L
Sbjct: 383 ETVKLAYVDQS--RDALDPNKTVWE-----------------------------EISGGL 411
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
I E +R + F + Q + SGG R RV LA+ L +LLLDEPT
Sbjct: 412 DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471
Query: 321 NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD-QQKLYYYKGNYSMFKK 379
N LD+ + L+ L + +++SHD+ FLD + I+ + + +++GNYS
Sbjct: 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYS---- 527
Query: 380 MYAQKSKERMKEFEKQEKRIK 400
Y + K R+ E Q RIK
Sbjct: 528 EYEEDKKRRLGEDADQPHRIK 548
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 50/246 (20%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
++VEN S G + + + I G G++GPNG GK+TLL+ +
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 194 SRDLKVPPN----IDILYCEQE-VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248
+D+ + Y Q LT E VL L F
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL-----------FGRP 111
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+E + + E L+ +G E A R + L SGG R RV +ARAL
Sbjct: 112 SKEDEEIVEEALELLGL---EHLADRPVDEL--------------SGGERQRVLIARALA 154
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQ 364
E +LLLDEPT+HLD+ I + L+ + T+++V HD + + +I L
Sbjct: 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214
Query: 365 QKLYYY 370
K+
Sbjct: 215 GKIVAQ 220
|
Length = 258 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-19
Identities = 69/275 (25%), Positives = 103/275 (37%), Gaps = 59/275 (21%)
Query: 137 QLAALENAVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA-- 193
A E ++I +EN S G + NL I G+ LVG +G GK+TLL +
Sbjct: 311 AEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF 370
Query: 194 --------------SRDLKVPPNI--DILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237
RDL P I + Q T E++L A ++
Sbjct: 371 LAPTQGEIRVNGIDLRDLS-PEAWRKQISWVSQNPYLFAGTIRENILLARPDASD----- 424
Query: 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297
+EI L G P+ G + + SGG
Sbjct: 425 ----------------EEIIAALDQAGLLEFVPKP------DGLDTVIGEGG-AGLSGGQ 461
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLDL-NAVIWLDNYLQGWK-KTLLIVSHDQSFLDNV 355
R++LARAL +LLLLDEPT HLD I L + K KT+L+++H +
Sbjct: 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD- 520
Query: 356 CNEIIHLDQQKLYYYKGNYS-------MFKKMYAQ 383
+ I+ LD +L +G + ++ + Q
Sbjct: 521 ADRIVVLDNGRL-VEQGTHEELSEKQGLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 7e-19
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 56/226 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++ S + + +L + G L+GP+G GKTTLLR IA L+ P + +IL
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG--LERPDSGEIL 58
Query: 207 YCEQEV------------VADD------LTAVESVLKADVKRTELLAECAKLEAADFSSE 248
++V V D LT E++ L+
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFG-------------LKLRGVPKA 105
Query: 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
+ R R +L +G + +R SGG + RV+LARAL
Sbjct: 106 EIRA------------------RVRELLELVGLEGLL-NRYPHELSGGQQQRVALARALA 146
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQS 350
EP+LLLLDEP + LD L L+ T + V+HDQ
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 52/243 (21%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NID 204
+VE+ ++S G+ + + + + G +VGPNG GK+TLL+ I L + P +I
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL--GL-LKPTSGSIR 57
Query: 205 IL------------YCEQEVVAD---DLTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
+ Y Q D ++ + VL L F
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGL-----------FRRLS 106
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+ ++ E L+ +G +E R+I SGG + RV LARAL
Sbjct: 107 KADKAKVDEALERVGL--SELADRQI---------------GELSGGQQQRVLLARALVQ 149
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+P LLLLDEP +D + L+ + T+L+V+HD + + ++ L++
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
Query: 367 LYY 369
+
Sbjct: 210 VAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 42/237 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++EN + +L + G YGL+GPNG GKTTL+R +A+ L P + I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILAT--LTPPSSGTIR 57
Query: 207 YCEQEVVADDLTAVESVL---------KADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
Q+V+ + + + E L A L
Sbjct: 58 IDGQDVL-KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL----------------- 99
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLL 314
K I + + R +L + + DRA K + SGG R RV +A+AL +P++L
Sbjct: 100 ---KGIPSKEVKARVDEVLELVN----LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152
Query: 315 LLDEPTNHLDLNAVIWLDNYLQ--GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
++DEPT LD I N L G + +++ +H ++++CN++ L++ KL +
Sbjct: 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------- 193
I+VEN ++S + + +L + G L+GPNG GK+TLL+ I
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 194 -SRDLKVPPNIDILYCEQEVVADD---LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
K + I Y Q+ D +T + VL + +L D
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDK---- 117
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
+++ E L+ +G ++DR SGG + RV LARAL
Sbjct: 118 ----EKVDEALERVGM-----------------EDLRDRQIGELSGGQKQRVLLARALAQ 156
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQK 366
P LLLLDEP +D+ + + L+ + KT+L+V+HD + + +I L++
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216
Query: 367 LYY 369
+
Sbjct: 217 IAS 219
|
Length = 254 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-------NIDILYCEQEVVADD 216
N +L I G + ++G G GK+TLL+ +A L P DI +++ D
Sbjct: 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG--LYKPTSGSVLLDGTDI----RQLDPAD 75
Query: 217 LTAVESVLKADVKRTELLA-------ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
L + DV L A D + I + G
Sbjct: 76 LRRNIGYVPQDV---TLFYGTLRDNITLGAPLADD---------ERILRAAELAGVTDFV 123
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI 329
+ G + +R + SGG R V+LARAL +P +LLLDEPT+ +D+N+
Sbjct: 124 NKHPN-----GLDLQIGERG-RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 330 WLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L L+ KTL+I++H S LD + + II +D ++
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-17
Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+V+N G + +L + G ++GP+G GKTTLLR I L+ P I
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL--LEQPEAGTIR 61
Query: 207 YCEQEVVAD-DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKA 262
+ + L+ + +++ + + + L + L+ I E +K
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL------FPHRTVLENIIEGPVIVKG 115
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ A RAR +LA +G + + + SGG + RV++ARAL + P ++L DEPT+
Sbjct: 116 EPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174
Query: 323 LDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
LD V + N ++ K+T++IV+H+ SF +V + I +DQ ++ +G K
Sbjct: 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI-VEQGPA---KA 230
Query: 380 MYAQKSKERMKEF 392
++A + R ++F
Sbjct: 231 LFADPQQPRTRQF 243
|
Length = 250 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 68/225 (30%), Positives = 94/225 (41%), Gaps = 61/225 (27%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------S 194
+++E S S G ++ + NL + G ++GP+G GK+TLLR IA
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 195 RDLKVPPNIDILYCEQEVVADDL----TAVESVLKADVKRTELLAECAKLEAADFSSEQQ 250
P DI Y QE D L T +++V L LE S +
Sbjct: 64 GRPVTGPGPDIGYVFQE---DALLPWLTVLDNVA---------LG----LELRGKSKAE- 106
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARAL 307
A RA+ +L +G + K SGG R RV++ARAL
Sbjct: 107 -----------------ARERAKELLELVG----LAGFEDKYPHQLSGGMRQRVAIARAL 145
Query: 308 YIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGW---KKTLLIVSHD 348
P LLLLDEP LD L D L+ W +KT+L+V+HD
Sbjct: 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 60/225 (26%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
+ G GL+GPNG GKTT LR +A +L+ D
Sbjct: 28 VKPGEVTGLLGPNGAGKTTTLRMLAG----------------------------LLEPDA 59
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEI---------YEELKA------------IGADS 267
A ++ D E E + + Y+ L A + D
Sbjct: 60 GF-------ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE 112
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
R + LG + DR FS G R +V++ARAL +P +LLLDEPT LD+ A
Sbjct: 113 LTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171
Query: 328 VIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
L +++ + K +L +H ++ +C+ ++ L + ++ Y
Sbjct: 172 TRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 35/254 (13%)
Query: 145 VDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
+++ N S + G N NL +A G + ++G +G GK+TLL + + P
Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWD-PQQ 392
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTEL----LAECAKLEAADFSSEQQEQLKEIYE 258
I E+ + D A+ + +R L L + +L D S E E++
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE------ELWA 446
Query: 259 ELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
L+ +G E + LG + SGG R R++LARAL + L LLD
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLG-------EGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 318 EPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG- 372
EPT LD + L + +G KTLL+V+H L+ + II LD K+
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEG--KTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTH 556
Query: 373 -----NYSMFKKMY 381
N +K++Y
Sbjct: 557 AELLANNGRYKRLY 570
|
Length = 573 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 34/239 (14%)
Query: 163 VNANLLIANGRRYGLVGPNGHGKTTLLR-----HIASRDLKVPPNIDILYCEQEVVADDL 217
+ + I G G +G NG GK+T L+ + + KV N + +E +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSI 99
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
V + +L + L+ E LK IYE I D R +
Sbjct: 100 GLVMGQ------KLQLWWDLPALD--SL-----EVLKLIYE----IPDDEFAERLDFLTE 142
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
L ++ K S G RMR LA AL P +L LDEPT LD+NA + +L+
Sbjct: 143 ILDLEGFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 338 WKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
+ + T+L+ +H + +C+ ++ +DQ +L + G + ++ + KEF
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFG-----PYKEF 254
|
Length = 325 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 7e-16
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ 349
SGG + R++LA+AL +P LL+LDEPT+ LD + L+ K KT+L+ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 350 SFLDNVCNEIIHLDQQKL 367
+ +C+ + L+ ++
Sbjct: 156 EEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-16
Identities = 85/304 (27%), Positives = 131/304 (43%), Gaps = 76/304 (25%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+EN + G L + + + G + L+GPNG GKTTLL+ L
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLK---------------LML 366
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECA-KLEAADFSSEQQEQLKEIYEELKAIGADS 267
Q L+AD R C KLE A F +Q + + K + +
Sbjct: 367 GQ-------------LQADSGR----IHCGTKLEVAYF-----DQHRAELDPEKTVMDNL 404
Query: 268 AEP--------RARRILAGLG---FS--RAMQDRATKNFSGGWRMRVSLARALYIEPT-L 313
AE R R +L L F RAM K SGG R R+ LAR L+++P+ L
Sbjct: 405 AEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT--PVKALSGGERNRLLLAR-LFLKPSNL 461
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373
L+LDEPTN LD+ + L+ L ++ T+L+VSHD+ F+DN E + ++GN
Sbjct: 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTEC--------WIFEGN 513
Query: 374 --YSMFKKMY--AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKS 429
+ Y A++ + + ++ + K++A E + R +K
Sbjct: 514 GKIGRYVGGYHDARQQQAQYLALKQPAV---------KKKEEAAAPKAETVKRSSKKLSY 564
Query: 430 KLQK 433
KLQ+
Sbjct: 565 KLQR 568
|
Length = 635 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 9e-16
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVP 200
I++EN S + G L + +L I G R GLVG NG GK+TLL+ IA +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 201 PNIDILYCEQ 210
+ I Y EQ
Sbjct: 61 STVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 9e-16
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 176 GLVGPNGHGKTTLLRHIA------SRDLKVPPNIDILYCEQ--EVVADDLTAVESVLKAD 227
G++GPNG GK+TL + I S +K+ + + Y +Q + + + T E +
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEI---- 409
Query: 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD 287
S + +K +G + E +R + F Q
Sbjct: 410 -------------------SGGLDIIK--------VG--NREIPSRAYVGRFNFKGGDQQ 440
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSH 347
+ SGG R R+ LA+ L +LLLDEPTN LD+ + L+ L + +++SH
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISH 500
Query: 348 DQSFLDNVCNEIIHL-DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIK 400
D+ FLD + I+ ++ +++GN+ Y + K R+ + RIK
Sbjct: 501 DRWFLDRIATHILAFEGDSQVEWFEGNFQ----EYEEDKKRRLGADAARPHRIK 550
|
Length = 556 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ + S G + +L + G ++GP+G GK+TLLR I L P + ++L
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG--LLRPDSGEVL 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA 262
+++ L+ E L +R +L + L F S ++E L+
Sbjct: 59 IDGEDI--SGLSEAE--LYRLRRRMGMLFQSGAL----FDS------LTVFENVAFPLRE 104
Query: 263 IGADSAEPRARRILAGLGFS--RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
S E +L L R +D SGG + RV+LARAL ++P LLL DEPT
Sbjct: 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 321 NHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQQKL 367
LD A +D+ ++ KK L ++V+HD + + I L K+
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
G GL+G NG GKTTLLR IA+ L +P +V D + V
Sbjct: 25 AEEGEITGLLGENGAGKTTLLRMIAT--LLIPD-------SGKVTIDGVDTVRDPSFVRR 75
Query: 229 KRTELLAEC---AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
K L E A+L A +E LK + L + + R + L +
Sbjct: 76 KIGVLFGERGLYARLTA-------RENLK-YFARLNGLSRKEIKARIAELSKRLQLLEYL 127
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTL 342
DR FS G + +V++ARAL +P++L+LDEPT+ LD+ ++++ K + +
Sbjct: 128 -DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYY 369
+ SH ++ +C+ +I L + ++
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVL 213
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 2e-15
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 48/225 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV----------- 212
+ + + G +GL+GPNG GKTTL ++ S L+ P + +L+ +++
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLR-PTSGSVLFDGEDITGLPPHEIARL 75
Query: 213 ----------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ +LT +E+V+ +A A+ + + + + +E E
Sbjct: 76 GIGRTFQIPRLFPELTVLENVM---------VAAQARTGSGLLLARARREEREARE---- 122
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT-- 320
RA +L +G + DR S G + R+ +ARAL +P LLLLDEP
Sbjct: 123 --------RAEELLERVGLADLA-DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173
Query: 321 -NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
N + + L L+ T+L+V HD + ++ + + LDQ
Sbjct: 174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 2e-15
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++V+N S+S V A + I G GLVG +G GK+TL R I L P +
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL--GLLKPTS 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQ------------ 250
I++ +++ +L K+ + Q
Sbjct: 60 GSIIFDGKDL------------------LKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTI 101
Query: 251 -EQLKEIYEELKAIGADSAEPRARR-ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
EQ+ E + A A +L G+G + +R SGG R RV++ARAL
Sbjct: 102 GEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161
Query: 309 IEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEII 360
+ P LL+ DEPT+ LD L+ L + TLL ++HD + + + +
Sbjct: 162 LNPKLLIADEPTSALDVSVQAQILDL---LKKLQEELGLTLLFITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 59/268 (22%), Positives = 95/268 (35%), Gaps = 73/268 (27%)
Query: 116 GQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRY 175
HSE + + ++ + N I+++N S+ G + + + + G +
Sbjct: 1 QLAHSESSRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHW 60
Query: 176 GLVGPNGHGKTTLLRHIA----------------------SRDLK-----VPPNIDILYC 208
+VGPNG GKTTLL + +L+ V + +
Sbjct: 61 AIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120
Query: 209 EQ----EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ +VV A + + D+ +L + L L+ +G
Sbjct: 121 VRETVRDVVLSGFFASIGIYQEDLTAEDL--------------AAAQWL------LELLG 160
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
A DR + S G + RV +ARAL +P LL+LDEP LD
Sbjct: 161 AKHLA-----------------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
Query: 325 LNAVIWLDNYLQGW-----KKTLLIVSH 347
L A L N L+ LL V+H
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 53/242 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
I+VEN + + + G +GL+GPNG GKTT ++ +A
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 194 SRD-LKVPPNI--DILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249
D ++ P + I Q++ DD LT E++
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENL-------------------------- 94
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
I+ L + R +L +G A DR K +SGG R R+ +AR+L
Sbjct: 95 -----YIHARLYGVPGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVH 148
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQ 365
P +L LDEPT LD + Y++ K+ T+L+ +H + +C+ + +D
Sbjct: 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208
Query: 366 KL 367
++
Sbjct: 209 RI 210
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 36/239 (15%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
I+++N S V A NL I G +VGP+G GK+TLL ++ K
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSG 60
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQL 253
+L + DLT + A ++R + LL D + + +L
Sbjct: 61 E-VLINGK-----DLTKLSEKELAKLRRKKIGFVFQNFNLLP--------DLTVLENVEL 106
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
+ A + A +L LG + + SGG + RV++ARAL P +
Sbjct: 107 PLLI---AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163
Query: 314 LLLDEPTNHLDL---NAVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368
+L DEPT +LD V+ L + KT+++V+HD L + +I L K+
Sbjct: 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 44/234 (18%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++ S++ G + + + G R LVGP+G GK+TLL + V P
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF---VDPT--- 375
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTEL-------------LAECAKLEAADFSSEQQEQ 252
E + + + + AD R ++ +AE +L D S
Sbjct: 376 ---EGSIAVNGVPLAD--ADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA---- 426
Query: 253 LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
EI E L+ G D GL SGG R++LARA +
Sbjct: 427 --EIREALERAGLDEFVAALP---QGLDT---PIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 313 LLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
LLLLDEPT HLD A + L QG +T+L+V+H + + I+ L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQG--RTVLLVTHRLALAAL-ADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV----------- 212
+ +L + G GL+GPNG GKTTL ++ + K P + +++ +++
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTL-FNLITGFYK-PSSGTVIFRGRDITGLPPHRIARL 79
Query: 213 ----------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ LT +E+V R L +++ +E E
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARL-------GLSGLLGRPRARKEEREARE---- 128
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT-- 320
RAR +L +G A N S G + R+ +ARAL +P LLLLDEP
Sbjct: 129 --------RARELLEFVGLGELADRPA-GNLSYGQQRRLEIARALATQPKLLLLDEPAAG 179
Query: 321 -NHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQ 364
N + + ++ + T+L++ HD + + + I+ L+
Sbjct: 180 LNPEETEELA---ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY 225
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-15
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + G GLVG +G GK+TL R +A +PP+ + DL L+
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGL---LPPSSGSI----IFDGQDLDLTGGELR 363
Query: 226 ADVKRTELLAECAKLEAADFS----SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281
+R +++ + S + L E R +L +G
Sbjct: 364 RLRRRIQMV-----FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL 418
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGW 338
DR SGG R RV++ARAL +EP LL+LDEP + LD V+ N L+
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL---NLLKDL 475
Query: 339 KK----TLLIVSHDQSFLDNVCNEII 360
++ T L +SHD + + + + +
Sbjct: 476 QEELGLTYLFISHDLAVVRYIADRVA 501
|
Length = 539 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 65/281 (23%), Positives = 107/281 (38%), Gaps = 66/281 (23%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-D 204
I+V+N S + G+ + NL I G ++GP+G GK+TLLR + V P +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL---VDPTSGE 60
Query: 205 ILYCEQEVVA-----------------------DDLTAVESVLKADVKRTELLAECAKLE 241
IL+ ++ L+ +E+VL + T L
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL- 119
Query: 242 AADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
FS E + Q + L+ +G D A RA SGG + R
Sbjct: 120 ---FSKEDKAQ---ALDALERVGILDKAYQRA------------------STLSGGQQQR 155
Query: 301 VSLARALYIEPTLLLLDEPTNHLD-LNAVIWLD-----NYLQGWKKTLLIVSHDQSFLDN 354
V++ARAL +P ++L DEP LD +A +D N G T+++ H
Sbjct: 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG--ITVIVNLHQVDLAKK 213
Query: 355 VCNEIIHLDQQKLYYY----KGNYSMFKKMYAQKSKERMKE 391
+ II L ++ + + ++Y + E +
Sbjct: 214 YADRIIGLKAGRIVFDGPASELTDEALDEIYGNEISEDINR 254
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 9e-15
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 149 VENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
+EN S S KG ++ + +L + G L G NG GKTTL + +A L + IL
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILL 59
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+ + A + + DV +L + + E + LK + A +
Sbjct: 60 NGKPIKAKERRKSIGYVMQDV-DYQLFTDSVREE--------------LLLGLKELDAGN 104
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--- 324
+A +L L A+++R + SGG + R+++A AL LL+ DEPT+ LD
Sbjct: 105 E--QAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ V L L K +++++HD FL VC+ ++ L
Sbjct: 162 MERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 9e-15
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 47/233 (20%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIAS 194
A +++ + S G ++ +L + G R ++GP+G GK+TLL +A
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA- 382
Query: 195 RDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK 254
L P + EV D + +R + A+ A L F + +E L+
Sbjct: 383 GLL--DPL------QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL----FDTTVRENLR 430
Query: 255 ---------EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
E++ L+ +G R + GL + + + SGG R R++LAR
Sbjct: 431 LARPDATDEELWAALERVGL---ADWLRALPDGLDTV--LGEGGAR-LSGGERQRLALAR 484
Query: 306 ALYIEPTLLLLDEPTNHLD----------LNAVIWLDNYLQGWKKTLLIVSHD 348
AL + +LLLDEPT HLD L A L G +T+++++H
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAA------LSG--RTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 63/245 (25%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-----------HIASR 195
I+++N S S ++ +L + G ++GP+G GK+TLLR I
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 196 DLKVPPNIDILYCEQEV--VADD------LTAVESVLKADVKRTELLAECAKLEAADFSS 247
V DIL ++V V LT +E+V A VK
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK------------------ 104
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLA 304
+K + A +A +L +G + D+A SGG + RV++A
Sbjct: 105 ------------VKKLSKAEAREKALELLEKVG----LADKADAYPAQLSGGQQQRVAIA 148
Query: 305 RALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
RAL ++P ++L DEPT+ LD V + D +G T++IV+H+ F V + +
Sbjct: 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM--TMIIVTHEMGFAREVADRV 206
Query: 360 IHLDQ 364
I +DQ
Sbjct: 207 IFMDQ 211
|
Length = 240 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 1e-14
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 47/243 (19%)
Query: 147 IKVENFSISAKGNDLFV----NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
I+++N S + G V +L I G +VGP+G GK+TLL + D P +
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD--RPTS 58
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQL 253
++ ++ A +R LL D ++ + +L
Sbjct: 59 GEVRVDGTDISKLSEKE-----LAAFRRRHIGFVFQSFNLLP--------DLTALENVEL 105
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIE 310
+ L + RA +L +G + DR SGG + RV++ARAL +
Sbjct: 106 PLL---LAGVPKKERRERAEELLERVG----LGDRLNHYPSELSGGQQQRVAIARALAND 158
Query: 311 PTLLLLDEPTNHLDL-NAVIWLD-----NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
P ++L DEPT +LD ++ N G T+++V+HD L + II L
Sbjct: 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAG--TTIVVVTHDPE-LAEYADRIIELRD 215
Query: 365 QKL 367
K+
Sbjct: 216 GKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 73/363 (20%), Positives = 127/363 (34%), Gaps = 85/363 (23%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++VEN ++ + V A + + G G+VG +G GK+TL L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLAL-ALMGLLPEGGR 64
Query: 203 ID---ILYCEQEVVADDLTAVESVLKADV-----KRTELLAECAKLEAADFSSEQQEQLK 254
I ++ ++++ + + + L + +Q++
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG---------DQIR 115
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
E A RA +L +G +DR SGG R RV +A AL ++P L
Sbjct: 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL 175
Query: 314 LLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
L+ DEPT LD L+ L + + +L ++HD + + + ++ +
Sbjct: 176 LIADEPTTALDVTTQAQILDL---LKDLQRELGMAVLFITHDLGVVAELADRVVVM---- 228
Query: 367 LYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEK 426
YKG I E G T+E+L+ Q
Sbjct: 229 ---YKG-------------------------EIVE---TGP--------TEEILSNPQHP 249
Query: 427 NKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSK 486
L A G ++I+ PR P P+L + N++ Y K L + +
Sbjct: 250 YTRGLLAAVPRLGDEKIIRLPRRG---------PLRAEPLLSVRNLSKRYGSRKGLFVRE 300
Query: 487 ADE 489
E
Sbjct: 301 RGE 303
|
Length = 539 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 64/220 (29%), Positives = 90/220 (40%), Gaps = 15/220 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I V + S+ + +L + G GLVGPNG GKTTLLR A P +L
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLR--AINGTLTPTAGTVL 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+V A A + + + T L + +F Q ++ +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSL--------SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 267 SAEPRA-RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
+ A R + G + DR + SGG R RV LARAL +LLLDEPT LD+
Sbjct: 114 ETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
Query: 326 NAVIW---LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
N + L L KT + HD C+E++ L
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212
|
Length = 402 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 245 FSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
F Q + E L + A+ RA L +G + SGG + RV++
Sbjct: 42 FQDPQLFPELTVRENLFFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAI 101
Query: 304 ARALYIEPTLLLLDEPTN 321
ARAL +P LLLLDEPT
Sbjct: 102 ARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA---SRDLKVPPNI 203
I++ + ++ + +L I G L+GP+G GK+TLLR + P
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEELK 261
++L +++ D+ +E ++R + F Q+ IY+ +
Sbjct: 61 EVLLDGKDIYDLDVDVLE------LRRRVGMV---------F---QKPNPFPGSIYDNV- 101
Query: 262 AIG--------ADSAEPRARRILAGLGFSRAMQDRAT-KNFSGGWRMRVSLARALYIEPT 312
A G + + R L ++DR SGG + R+ LARAL EP
Sbjct: 102 AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE 161
Query: 313 LLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+LLLDEPT+ LD + ++ + KK T++IV+H+
Sbjct: 162 VLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-14
Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 50/294 (17%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
G R GL+G NG GK+TL++ +A S ++ + I + Y Q + L+
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL--------EFLR 389
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
AD + LA A E EQ+ R L G GF
Sbjct: 390 ADESPLQHLARLAPQE-----LEQK---------------------LRDYLGGFGFQGDK 423
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV 345
T+ FSGG + R+ LA ++ P LLLLDEPTNHLDL+ L L ++ L++V
Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV 483
Query: 346 SHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQE--------- 396
SHD+ L + +++ + K+ + G+ +++ + K+ + E +
Sbjct: 484 SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQA 543
Query: 397 -KRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPRE 449
K K +A +++ Q +K L ++ EK ++L +A+E G +EL + R+
Sbjct: 544 RKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRK 597
|
Length = 638 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 8e-14
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 64/246 (26%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+++N S + +L + G ++GP+G GK+TLLR I L+ P + I+
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN--LLEEPDSGTII 58
Query: 207 YCEQEVVADD----------------------LTAVESVLKADVKRTELLAECAKLEAAD 244
++ D LT +E++ A +K
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK--------------- 103
Query: 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRV 301
+K + AE RA +L +G + D+A SGG + RV
Sbjct: 104 ---------------VKGMSKAEAEERALELLEKVG----LADKADAYPAQLSGGQQQRV 144
Query: 302 SLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358
++ARAL + P ++L DEPT+ LD + V+ + L T+++V+H+ F V +
Sbjct: 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR 204
Query: 359 IIHLDQ 364
+I +D
Sbjct: 205 VIFMDD 210
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 53/170 (31%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + GR L+GPNG GK+TL + +R L V I SV
Sbjct: 21 SFTVRPGRFVALLGPNGAGKSTLFS-LLTR-LYVAQEGQI----------------SVAG 62
Query: 226 ADVKRTELLAECAKLEAA--------DFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
D++R A A+L D S Q + + L + A R +LA
Sbjct: 63 HDLRRAPRAA-LARLGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIAELLA 118
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
LG + D+ + +GG R RV +ARAL P LLLLDEPT LD +
Sbjct: 119 RLGLAERADDKV-RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 9e-14
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 40/207 (19%)
Query: 170 ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV- 228
N G+ G +G GK+TLLR IA L+ P +V + +S K ++
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAG--LEKPDG-------GTIVLNGTVLFDSRKKINLP 71
Query: 229 ---KRTELLAECAKLEAADFSSEQQEQL---KEIYEELKAIGADSAEPRARRI-----LA 277
++ L+ F QQ L + E L A G R RI L
Sbjct: 72 PQQRKIGLV----------F---QQYALFPHLNVRENL-AFGLKRKRNREDRISVDELLD 117
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
LG + +R SGG + RV+LARAL +P LLLLDEP + LD + L L+
Sbjct: 118 LLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
Query: 338 WKKTL----LIVSHDQSFLDNVCNEII 360
KK L + V+HD S + + + I+
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIV 203
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 67/229 (29%), Positives = 95/229 (41%), Gaps = 65/229 (28%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIA--------- 193
++V N S + G V A +L + G LVGP+G GK+TLLR IA
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 194 -SRDLK--VPPNIDILYCEQEVVADD-----LTAVESVLKADVKRTELLAECAKLEAADF 245
D + P D Y Q D LT +++V L E + A+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQ----QDALLPWLTVLDNVA--------LGLELQGVPKAE- 107
Query: 246 SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
A RA +L +G S ++ SGG R RV+LAR
Sbjct: 108 ----------------------ARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVALAR 144
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVI------WLDNYLQGWKKTLLIVSHD 348
AL ++P +LLLDEP + LD A+ L + + KT+L+V+HD
Sbjct: 145 ALAVDPDVLLLDEPFSALD--ALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 22/221 (9%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VA 214
KG L NA +I+ ++G +G GK+T LR I L+ P I+ Q + V
Sbjct: 22 KGVSLQANAGDVIS------IIGSSGSGKSTFLRCINF--LEKPSEGSIVVNGQTINLVR 73
Query: 215 DDLTAVESVLK-ADVKRTELLAECAKLEAADFSS-EQQEQLKEIYEE-LKAIGADSAEPR 271
D + LK AD + LL + F+ L+ + E ++ +G E R
Sbjct: 74 DK----DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129
Query: 272 ARRI--LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LN 326
R + LA +G Q + + SGG + RVS+ARAL +EP +LL DEPT+ LD +
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 327 AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
V+ + L KT+++V+H+ F +V + +I L Q K+
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
Length = 257 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 30/224 (13%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
G LF N N I R +VGPNG GK+T+L+ I+ +L
Sbjct: 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG---------------------EL 559
Query: 218 TAVE-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+V ++ R + ++ ++ D SS + + + E + R L
Sbjct: 560 QPSSGTVFRSAKVRMAVFSQ-HHVDGLDLSSNPLLYMMRCFPGV-------PEQKLRAHL 611
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
G + + + SGG + RV+ A+ + +P +LLLDEP+NHLDL+AV L L
Sbjct: 612 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV 671
Query: 337 GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380
++ +L+VSHD+ + +E+ + + K+ + G + +KK
Sbjct: 672 LFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715
|
Length = 718 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 3e-13
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVIW--LDNYLQGWKKTLLIVSHD 348
SGG R R+++ARAL +P +L+LDE T+ LD A+I L +G KT+++++H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHR 154
Query: 349 QSFLDNVCNEIIHLDQQK 366
S + + + II LD +
Sbjct: 155 LSTIRD-ADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQ 349
+ SGG R V+LARAL +P +LLLDEPT+ +D + + L+ W KTL++V+H
Sbjct: 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660
Query: 350 SFLDNVCNEIIHLDQQKL 367
S LD + + II +D ++
Sbjct: 661 SLLD-LVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 54/223 (24%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDL-----KVPPNIDILY 207
N + G +G +GPNG GKTT +R +A D+ KV +I I+
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+ V +DLT E++ E+ L + D
Sbjct: 73 -QYASVDEDLTGRENL-------------------------------EMMGRLYGLPKDE 100
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--L 325
AE RA +L A DR +SGG R R+ +A +L +P +L LDEPT LD
Sbjct: 101 AEERAEELLELFELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159
Query: 326 NAVIW-LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
IW L+ T+L+ +H D +C+ I +D ++
Sbjct: 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-13
Identities = 65/233 (27%), Positives = 95/233 (40%), Gaps = 36/233 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ N S + NL + G L+GP+G GK+TLLR IA L+ P + I
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG--LEQPDSGRIR 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTEL------LAECAKLEAADFSSEQQEQLKEIYEEL 260
Q+ + + ++ A L D + E K ++
Sbjct: 59 LNGQDAT-----------RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI 107
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
KA R +L + + DR SGG R RV+LARAL +EP +LLLDEP
Sbjct: 108 KA--------RVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158
Query: 321 NHLD------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD L + WL T + V+HDQ V + I+ + K+
Sbjct: 159 GALDAKVRKELRS--WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-13
Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 54/253 (21%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++VEN S + N NL I G ++GP+G GK+TLLR I +R L P + I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NR-LVEPSSGSI 59
Query: 206 LYCEQEVVA-----------------------DDLTAVESVLKADVKRTELLAECAKLEA 242
L ++ + LT +E+VL +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR-- 117
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
FS E +E+ E + LA + RA SGG + RV+
Sbjct: 118 --FSEEDKERALSALERVG--------------LADKAYQRA------DQLSGGQQQRVA 155
Query: 303 LARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNE 358
+ARAL +P L+L DEP LD + +D + K+ T++I H +
Sbjct: 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215
Query: 359 IIHLDQQKLYYYK 371
I+ L ++ +
Sbjct: 216 IVGLKAGEIVFDG 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 37/219 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L I G +G++G +G GK+TLLR I + L+ P + + Q++ A L+ E
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLI-NL-LERPTSGSVFVDGQDLTA--LSEAE-- 77
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRI---- 275
L+ ++ ++ + L SS + ++E L+ G AE + R
Sbjct: 78 LRQLRQKIGMIFQHFNL----LSS------RTVFENVAFPLELAGVPKAEIKQRVAELLE 127
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL 335
L GL DR SGG + RV++ARAL P +LL DE T+ LD + L
Sbjct: 128 LVGLS---DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT---QSIL 181
Query: 336 QGWKK-------TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ K T+++++H+ + +C+ + LDQ +L
Sbjct: 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 8e-13
Identities = 61/205 (29%), Positives = 84/205 (40%), Gaps = 50/205 (24%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ NL IA+G L+GP+G GKTT LR IA L+ P + I Y V D
Sbjct: 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAG--LEEPTSGRI-YIGGRDVTD-------- 66
Query: 224 LKADVKRTELLAECAKLEAAD------FSSEQQEQL---KEIYE------ELKAIGADSA 268
L D F Q L +Y+ +L+ + D
Sbjct: 67 ----------------LPPKDRDIAMVF---QNYALYPHMTVYDNIAFGLKLRKVPKDEI 107
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---- 324
+ R R + L + DR K SGG R RV+L RA+ EP + L+DEP ++LD
Sbjct: 108 DERVREVAELLQIEHLL-DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQ 349
+ L Q T + V+HDQ
Sbjct: 167 VQMRAELKRLQQRLGTTTIYVTHDQ 191
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-12
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 28/200 (14%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
D+ N + I G +VG +G GK+TLL + D P + D+++ Q ++
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQP-----MSK 75
Query: 220 VESVLKADVKRTEL--LAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARR 274
+ S KA+++ +L + + L DF++ L+ + L IG RA
Sbjct: 76 LSSAAKAELRNQKLGFIYQFHHL-LPDFTA-----LENVAMPL-LIGKKKPAEINSRALE 128
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-NAVIWLD- 332
+LA +G R ++ SGG R RV++ARAL P L+L DEPT +LD NA
Sbjct: 129 MLAAVGLEHRANHRPSE-LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187
Query: 333 ----NYLQGWKKTLLIVSHD 348
N LQG L+V+HD
Sbjct: 188 LGELNRLQG--TAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-12
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 54/232 (23%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI------ASRDLKVP 200
+ +EN S+S + + +L + G+ L+GPNG GK+TL+R + +K
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64
Query: 201 PNIDILYCEQEVVADD---LTAVESV-LKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256
+ I Y Q++ D LT + L+ K+ ++L
Sbjct: 65 GKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDIL---------------------- 102
Query: 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
P +R+ AG MQ SGG RV LARAL P LL+L
Sbjct: 103 -------------PALKRVQAGHLIDAPMQ-----KLSGGETQRVLLARALLNRPQLLVL 144
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQ 364
DEPT +D+N + L + + ++ L L+VSHD + +E++ L+
Sbjct: 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 54/226 (23%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLR------HIASRDLKV----P--------PNIDILY 207
+ I G G +GPNG GKTT L+ S +++V P I +++
Sbjct: 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
++ + DL ++S LLA L A F +++L E+ E L +
Sbjct: 101 GQKTQLWWDLPVIDSF--------YLLAAIYDLPPARF----KKRLDELSELLD-LE--- 144
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
+L D + S G RMR +A AL EP +L LDEPT LD+ A
Sbjct: 145 ------ELL----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 328 VIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
+ N+L+ + + T+L+ SH ++ + ++ +D+ +L Y
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-12
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N G L+G NG GK+TLL H+ +L + V D +
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNG----------LLRPQSGAVLIDGEPL----- 56
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK------AIGADSAEPRARRILAGL 279
D R LL ++ + Q ++ +++ + E R R L +
Sbjct: 57 -DYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G S +++R T SGG + RV++A A+ + P +LLLDEPT LD + L+ +
Sbjct: 116 GAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 340 ---KTLLIVSHD 348
T++I +HD
Sbjct: 175 AEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-12
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
L++ G +VGP+G GK+TLL +A D + +L L ++
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLL-------GQPLHKLDED 80
Query: 224 LKADVKRT---------ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
+A ++ L+ LE + EL+ + + A+
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENV-----------ALPLELRGESSADSRAGAKA 129
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAVIWL 331
+L +G + + SGG + RV+LARA P +L DEPT +LD + + L
Sbjct: 130 LLEAVGLGKRL-THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188
Query: 332 DNYLQ-GWKKTLLIVSHDQSFLDNVCNEIIHL 362
L TL++V+HD L C+ + L
Sbjct: 189 LFALNRERGTTLVLVTHDPQ-LAARCDRQLRL 219
|
Length = 228 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI--- 203
I++EN ++ + N NL I + L+GP+G GK+TLLR + + VP
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEE-- 259
+L+ Q++ + VE L+ V F Q+ IY+
Sbjct: 62 KVLFDGQDIYDKKIDVVE--LRRRVGMV-------------F---QKPNPFPMSIYDNIA 103
Query: 260 --LKAIGADS---AEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEP 311
+ G + L ++DR + SGG + R+ +ARAL +EP
Sbjct: 104 YGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP 163
Query: 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
+LLLDEPT+ LD A ++ +Q KK T++IV+H
Sbjct: 164 EVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-12
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 66/251 (26%)
Query: 146 DIKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLR-------------- 190
I+ EN S S G + + + I G + +VGP+G GK+TL++
Sbjct: 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 191 ----HIASRDLKVPPNIDILYCEQEV------VADDLTAVESVLKADVKRTELLAECAKL 240
I L I Q+ + +++ + + D E+
Sbjct: 388 IDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTIRENIA----LGRPDATDEEIEEALKLA 442
Query: 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
A +F L + Y+ + +G N SGG R R
Sbjct: 443 NAHEFI----ANLPDGYDTI--VGERG-----------------------VNLSGGQRQR 473
Query: 301 VSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVSHDQSFLDNVC 356
+++ARAL P +L+LDE T+ LD A+I L L+G +T LI++H S + N
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKG--RTTLIIAHRLSTIKN-A 530
Query: 357 NEIIHLDQQKL 367
+ II LD ++
Sbjct: 531 DRIIVLDNGRI 541
|
Length = 567 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVI--WLDNYLQGWKK 340
+ DR SGG R RV+LARAL +EP +LLLDEP LD + + WL
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 341 TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
T + V+HDQ + + ++ L+Q ++
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 55/248 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA---- 219
N NL I G G+VGP+G GK+TL + + + L P + +L ++ D
Sbjct: 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532
Query: 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
+ VL+ E FS ++ + L GA LAG
Sbjct: 533 MGVVLQ---------------ENVLFSRSIRDNIA-----LCNPGAPFEHVIHAAKLAGA 572
Query: 280 ---------GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AV 328
G++ + ++ N SGG R R+++ARAL P +L+ DE T+ LD A+
Sbjct: 573 HDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 329 IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSMF 377
I + +G +T++I++H S + C+ II L++ + L +G Y+
Sbjct: 632 IMRNMREICRG--RTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLALQGLYA-- 686
Query: 378 KKMYAQKS 385
+++ Q+S
Sbjct: 687 -RLWQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWLDNYLQGWKKTLLIVS 346
SGG R R+ LARALY P +L+LDEP +HLD LN I L+ T ++++
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---AALKAAGATRIVIA 153
Query: 347 HDQSFLDNVCNEIIHLDQQKL 367
H L + I+ L+ ++
Sbjct: 154 HRPETL-ASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 28/231 (12%)
Query: 147 IKVENFSISAKGNDLFV---NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I+V N S K FV + +L I +G L+GP+G GKTTLLR IA L+ P +
Sbjct: 3 IEVRNVS---KRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSG 57
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL+ ++ A D+ E + + L + F + ++
Sbjct: 58 TILFGGED--ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP---------RSE 106
Query: 264 GADSAEPRAR-RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
AE RA+ L L + DR SGG R RV+LARAL +EP +LLLDEP
Sbjct: 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 323 LDLNAVI------WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD A + WL T + V+HDQ V + ++ +++ ++
Sbjct: 167 LD--AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 58/210 (27%), Positives = 77/210 (36%), Gaps = 46/210 (21%)
Query: 172 GRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNIDILYCEQ--EVVADD 216
G GL+GPNG GKTTLLR +A I Y Q E D
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-KGWRHIGYVPQRHEFAWDF 64
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+V + + RT + + ADF A R L
Sbjct: 65 PISVAHTVMSG--RTGHIGWLRRPCVADF-----------------AAVRDALRRVG--L 103
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
L DR SGG R RV +ARAL P++LLLDEP LD+ L
Sbjct: 104 TEL------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157
Query: 337 ---GWKKTLLIVSHDQSFLDNVCNEIIHLD 363
G +L+ +HD + C+ ++ L+
Sbjct: 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLN 187
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 53/218 (24%)
Query: 172 GRRYGLVGPNGHGKTT----LLRHIASRDLKVPPNIDILYCEQ----------------- 210
G GLVG +G GK+T LLR I S+ +I + Q
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLINSQG-------EIWFDGQPLHNLNRRQLLPVRHRI 364
Query: 211 EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
+VV D S L + +++ E ++ S+ Q+EQ
Sbjct: 365 QVVFQD---PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ------------------ 403
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAV 328
+ ++ +G + R FSGG R R+++ARAL ++P+L++LDEPT+ LD + A
Sbjct: 404 QVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463
Query: 329 I--WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
I L + Q + L +SHD + +C+++I L Q
Sbjct: 464 ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501
|
Length = 529 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 52/203 (25%)
Query: 147 IKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN--- 202
I+VEN S + + +L I G L+GP+G GK+TLLR + V P
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL---VEPTSGS 57
Query: 203 IDILYCEQEVVA---------------------DDLTAVESVLKADVKRTELLAECAKLE 241
+ I + + + L+ +E+VL + R L
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL- 116
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
F E++++ L+ +G L + RA SGG + RV
Sbjct: 117 ---FPKEEKQRALAA---LERVG-----------LLDKAYQRA------DQLSGGQQQRV 153
Query: 302 SLARALYIEPTLLLLDEPTNHLD 324
++ARAL +P L+L DEP LD
Sbjct: 154 AIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 58/248 (23%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIA 193
I++ + + + L G L+GP+G GK++LLR +IA
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 194 SRDL---KVPPNIDILYCEQEV--------VADDLTAVESVLKADVKRTELLAECAKLEA 242
K P + I + V + LT E++++A + L + A A
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
++ LK + + A DR + SGG + RV+
Sbjct: 123 -------EKLLKRLRLKPYA------------------------DRYPLHLSGGQQQRVA 151
Query: 303 LARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
+ARAL +EP +LL DEPT LD ++ + L T +IV+H+ + +
Sbjct: 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV 211
Query: 360 IHLDQQKL 367
++++ +
Sbjct: 212 VYMENGHI 219
|
Length = 242 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
N +L + G L GP+G GK+TLLR + + L I + + E E V DL E
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH-EGEWV--DLVTAE 83
Query: 222 SVLKADVKRT------ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI 275
+V+RT + L ++ A D +E + + A +A +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG--------VPREVARAKAADL 135
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLD 332
L L + A FSGG + RV++AR ++ +LLLDEPT LD V+ L
Sbjct: 136 LTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
+ L+ + HD+ + V + ++ +
Sbjct: 196 REAKARGAALVGIFHDEEVREAVADRLLDVSAF 228
|
Length = 235 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
NL + G + ++GPNG GK+TL I +IL+ ++++ +L+ E
Sbjct: 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL--ELSPDERARA 81
Query: 226 ------------ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
V ++ L + L E +ELK
Sbjct: 82 GIFLAFQYPVEIPGVTNSDFLRAAMNAR-----RGARGILPEFIKELK------------ 124
Query: 274 RILAGLGFSRAMQDRA-TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
LG +R + FSGG + R + + L +EP L +LDEP + LD++A V
Sbjct: 125 EKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184
Query: 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
N L+ + +LI++H Q LD + + +H+
Sbjct: 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 69/224 (30%), Positives = 98/224 (43%), Gaps = 42/224 (18%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLL------RHIASRDLKVPPNIDILYCEQEV-- 212
LF + NL I G L GP+G GKTTLL R + LKV QE+
Sbjct: 21 LF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV--------LGQELYG 71
Query: 213 -VADDLTAVESVLKADVKRTELLAECAKLEAADF-SSEQQEQLKEIYEELKAIGADSAEP 270
+L + + + LL F ++ Q Q+ E + A
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLL---------GFLTARQNVQMA--LELQPNLSYQEARE 120
Query: 271 RARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
RAR +L +G + D N SGG + RV++ARAL P L+L DEPT LD +
Sbjct: 121 RARAMLEAVG----LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
Query: 328 VIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ +Q + T+LIV+HD LD V + I+H++ KL
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 63/225 (28%)
Query: 149 VENFSIS--AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---- 202
V + S+S K + +L IA+G ++GP+G GKTTLL IA V P+
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF---VTPSRGSI 62
Query: 203 ------IDILYCEQEVVADD------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQ 250
I+ E+ VV + L +++V
Sbjct: 63 QLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG------------------------ 98
Query: 251 EQLKEIYEELKAIGADSAEPR--ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
L+ G + A+ R A ++LA +G A + + SGG R RV +ARAL
Sbjct: 99 ---------LQLRGIEKAQRREIAHQMLALVGLEGA-EHKYIWQLSGGMRQRVGIARALA 148
Query: 309 IEPTLLLLDEPTNHLDLNA-----VIWLDNYLQGWKKTLLIVSHD 348
+EP LLLLDEP LD + LD + + K+ LLI +HD
Sbjct: 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THD 192
|
Length = 259 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 62/246 (25%), Positives = 96/246 (39%), Gaps = 41/246 (16%)
Query: 134 TGGQLAALENAV-DIKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRH 191
TG ++ +NA I +EN S+ + N + G R + G +G GKT+LLR
Sbjct: 379 TGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 192 IA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADF 245
+A S + +P + +L+ Q L L+ E L C A DF
Sbjct: 439 LAGLWPWGSGRISMPADSALLFLPQRPY---LPQGT--LR------EAL--CYPNAAPDF 485
Query: 246 SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
S +L + L +G L L +DR + SGG + R++ AR
Sbjct: 486 SD---AELVAV---LHKVG-----------LGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLD 363
L +P + LDE T+ LD L L+ T++ V H + L N + + L
Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH-RPTLWNFHSRQLELL 587
Query: 364 QQKLYY 369
Sbjct: 588 DDAGGQ 593
|
Length = 604 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+ EN S S G L +L + G ++GPNG GK+TLL+ + S +L P + ++
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL-SGELS-PDSGEVT 59
Query: 207 YCEQEVVADDLTAVESVLKADVKR--TELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
V + E V + L A F+ ++ Q+ I
Sbjct: 60 L--NGVPLNSWPPEELARHRAVLPQNSSL--------AFPFTVQEVVQMGRIPHRSGREP 109
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL------YIEPTLLLLDE 318
+ A + LA S + R + SGG + RV LAR L L LDE
Sbjct: 110 EEDERI-AAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167
Query: 319 PTNHLDL 325
PT+ LD+
Sbjct: 168 PTSALDI 174
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 59/225 (26%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA----------SRDLKVPPNIDILYCEQEVV 213
+ + + G R GL+G NG GK+TLLR +A + +V + +
Sbjct: 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP-- 97
Query: 214 ADDLTAVESV-LKA---DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
+LT E++ L + R E+ E++ EI E
Sbjct: 98 --ELTGRENIYLNGRLLGLSRKEI----------------DEKIDEIIE----------- 128
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--- 326
+ LG D K +S G + R++ A A +EP +LL+DE D
Sbjct: 129 ------FSELG---DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179
Query: 327 -AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
L L+ KT+++VSHD S + +C+ + L++ K+ +
Sbjct: 180 KCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 9e-11
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 25/212 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++++ ++ N + + +L I G L+G +G GKTTLLR IA V L
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF---VKA--AGL 60
Query: 207 YCEQEVVADDLTAV---ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ DLT + L + L + F Q+ K
Sbjct: 61 TGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK--------- 111
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
AD AE R L +G A SGG + R+++ARA+ IEP +LLLDEP + L
Sbjct: 112 -ADIAE-RVADALKLVGLGDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 324 DLNAVIWLDNYLQGWKK-----TLLIVSHDQS 350
D N + + + T+L V+HDQ
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQD 200
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 63/235 (26%)
Query: 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDL-----KVP 200
+DL +N + G +GL+G NG GKTT L+ +I +
Sbjct: 19 DDLSLN----VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR 74
Query: 201 PNIDILYCEQE-VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE 259
++ YC Q + D+LT E + Y
Sbjct: 75 QSLG--YCPQFDALFDELTVREHL-------------------------------RFYAR 101
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
LK + + +L LG + ++ + SGG + ++SLA AL P++LLLDEP
Sbjct: 102 LKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
Query: 320 TNHLDLNA--VIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
T+ LD + IW + + +K ++++ +H + +C+ I + KL
Sbjct: 161 TSGLDPASRRAIW--DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215
A + N +L + G + GP+G GK+TLL+ +AS P L E E V+
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDVST 69
Query: 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP-RARR 274
LK + R ++ + CA+ A F ++ L ++ I + A
Sbjct: 70 --------LKPEAYRQQV-SYCAQ-TPALFGDTVEDNLIFPWQ----IRNRRPDRAAALD 115
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+LA ++ + SGG + R++L R L P +LLLDE T+ LD + ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 335 LQGW----KKTLLIVSHD 348
+ + +L ++HD
Sbjct: 176 IHRYVREQNVAVLWITHD 193
|
Length = 223 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 35/224 (15%)
Query: 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
+ VEN +I G + + G ++GP+G GK+TL R I +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI----------VG 366
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRT--------ELLAECAKLEAADFSSEQQEQLKEI 256
I V D ++ + + EL A F + +I
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE--KI 424
Query: 257 YEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
E K G ++ L G+ + SGG R R++LARALY +P L+
Sbjct: 425 IEAAKLAGV-------HELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDPKLV 476
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNV 355
+LDEP ++LD L N ++ K T+++++H S L V
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 39/213 (18%)
Query: 166 NLLIANGRRYGLVGPNGHGKTT----LLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221
+L + G+ GLVG +G GK+T LLR I S+ +I + Q++ D L+
Sbjct: 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG-------EIRFDGQDI--DGLS--- 354
Query: 222 SVLKADVKRTELLAECAKLEAA---DFSSEQQEQ-LKEIYEE-----LKAIGADSAEPRA 272
R E+ +++ + S + +I EE + A + R
Sbjct: 355 --------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRV 406
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
L +G A ++R FSGG R R+++ARAL ++P L+LLDEPT+ LD + V+
Sbjct: 407 IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 330 WLDNYLQGWKKTL--LIVSHDQSFLDNVCNEII 360
L LQ K L L +SHD + + +C+ +I
Sbjct: 467 DLLRDLQQ-KHGLSYLFISHDLAVVRALCHRVI 498
|
Length = 534 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 53/182 (29%), Positives = 67/182 (36%), Gaps = 38/182 (20%)
Query: 156 AKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA 214
+G LF + +A G L GPNG GKTTLLR IA L P I +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG--LLPPAAGTIKLDGGD--I 66
Query: 215 DDLTAVESV--------LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
DD E+ +K + E L A + I L+A+G
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD--------IAAALEAVG-- 116
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
LA L S G + RV+LAR L + +LDEPT LD
Sbjct: 117 ---------LAPLA------HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 327 AV 328
AV
Sbjct: 162 AV 163
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 26/208 (12%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
++N S+ G+ L N N IA G L+GP+G GK+TLL +
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
+A + L + +R ++L + F + + L +
Sbjct: 51 ---ALAGQFS-CTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106
Query: 269 EPRARRILAGLGFSRA----MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ ARR A R+ + SGG R RV+L RAL +P LLLDEP + LD
Sbjct: 107 KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
Query: 325 L----NAVIWLDNYLQGWKKTLLIVSHD 348
+ W+ + ++ + V+HD
Sbjct: 167 VALRDQFRQWVFSEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + G L GP+G GK+TLL+ + + L P + IL + D A
Sbjct: 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPRE 83
Query: 224 LKADVKRTEL------LAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRI 275
+ +V+R + L ++ A + + E L G ++A RAR +
Sbjct: 84 V-LEVRRKTIGYVSQFLRVIPRVSALEV----------VAEPLLERGVPREAARARAREL 132
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLD 332
LA L + FSGG + RV++AR + +LLLDEPT LD V+ L
Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEII 360
+ L+ + HD+ + V + ++
Sbjct: 193 AEAKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 54/253 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA---SRDLKVPPNI 203
I+VE + + + +L I +G L+GP+G GK+TLLRH++ + D +I
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 204 DIL----YCEQEVVAD-------------------DLTAVESVLKADVKRTELLAECAKL 240
++L E + D L+ +E+VL + T C
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSW 124
Query: 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
F+ EQ++ RA + L +G R + SGG + R
Sbjct: 125 ----FTREQKQ-------------------RALQALTRVGMVHFAHQRVS-TLSGGQQQR 160
Query: 301 VSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYL---QGWKKTLLIVSHDQSFLDNVC 356
V++ARAL + ++L DEP LD +A I +D Q T+++ H + C
Sbjct: 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC 220
Query: 357 NEIIHLDQQKLYY 369
I+ L Q ++Y
Sbjct: 221 ERIVALRQGHVFY 233
|
Length = 262 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 30/213 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---------CEQEVVA 214
N ++ I G ++G G GKTT + H+ + L I+ ++ E+E V
Sbjct: 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL 84
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS------- 267
+ L + K K+ + + E + F + + ++ E+ G S
Sbjct: 85 EKLV----IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEE 140
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
A+ RA + + +G + R+ SGG + RV+LA L +EP L+ DEPT LD
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 328 VI----WLDN-YLQGWKKTLLIVSHDQSFLDNV 355
V DN QG KT+++V+HD LDNV
Sbjct: 201 VKEILEIFDNLNKQG--KTIILVTHD---LDNV 228
|
Length = 305 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 65/246 (26%)
Query: 153 SISAKGNDLFVNA-------NLLIANGRRYGLVGPNGHGKTTLLR-------------HI 192
SI G + F A L G L+GP+G GK++LLR +I
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 193 ASR--DLKVPPNI-DILYCEQEV--------VADDLTAVESVLKADVKRTELLAECAKLE 241
A D P+ I + V + LT +++++A + L
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGL-------- 113
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
S+ Q A RA ++L L DR + SGG + RV
Sbjct: 114 -----SKDQ-----------------ALARAEKLLERLRLK-PYADRFPLHLSGGQQQRV 150
Query: 302 SLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358
++ARAL +EP +LL DEPT LD ++ + L T +IV+H+ +
Sbjct: 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASR 210
Query: 359 IIHLDQ 364
+++++
Sbjct: 211 VVYMEN 216
|
Length = 242 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 50/185 (27%), Positives = 68/185 (36%), Gaps = 31/185 (16%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+ + G LF + +A G + GPNG GKTTLLR +A L P +L
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG--LSPPLAGRVLLN 60
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD-----FSSEQQEQLKEIYEELKAI 263
+ D +R + L A S + + A
Sbjct: 61 GGPL--------------DFQRDSIARGLLYLGHAPGIKTTLSVLENLRF------WHAD 100
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+D A LA +G +DR S G + RV+LAR L L +LDEPT L
Sbjct: 101 HSDEQVEEA---LARVGL-NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
Query: 324 DLNAV 328
D V
Sbjct: 157 DKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 61/216 (28%), Positives = 79/216 (36%), Gaps = 69/216 (31%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA-------------SRDLK-VPP---NIDIL 206
+ +L I G L+GP+G GKTTLLR IA D+ VPP I +
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM- 81
Query: 207 YCEQEVVAD-----DLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE 258
V +T E+V LK K + E + E
Sbjct: 82 -----VFQSYALFPHMTVEENVAFGLKVRKKLKK-----------------AEIKARVEE 119
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
L+ +G E A R L S Q R V+LARAL EP +LLLDE
Sbjct: 120 ALELVG---LEGFADRKPHQL--SGGQQQR------------VALARALVPEPKVLLLDE 162
Query: 319 PTNHLDLN----AVIWLDNYLQGWKKTLLIVSHDQS 350
P + LD L + T + V+HDQ
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
|
Length = 352 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228
+ G +GL+GPNG GKTT LR + L P I C + V + A
Sbjct: 30 VQRGECFGLLGPNGAGKTTTLRMLLG--LTHPDAGSISLCGEPVPSRARHAR-------- 79
Query: 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ-- 286
+R ++ + L+ DF+ + + Y G +A RA + L F++
Sbjct: 80 QRVGVVPQFDNLDP-DFTVRENLLVFGRY-----FGLSAAAARAL-VPPLLEFAKLENKA 132
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTL 342
D SGG + R++LARAL +P +L+LDEPT LD A ++W L + L KT+
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTI 191
Query: 343 LIVSHDQSFLDNVCNEIIHLDQ 364
L+ +H + +C+ + +++
Sbjct: 192 LLTTHFMEEAERLCDRLCVIEE 213
|
Length = 306 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++ +N S N +L + YGL+GPNG GK+TLL+ I + P + +I+
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRPTSGEII 58
Query: 207 YCEQEVVADDLTAVESVLKA-----DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
+ DL + S++++ ++ E L L S I E L
Sbjct: 59 FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS--------RIDEVLN 110
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ L G +A K FS G + R+ +A AL P LL+LDEPTN
Sbjct: 111 IVD-----------LTNTGKKKA------KQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153
Query: 322 HLDLNAVIWLDNYLQGWKK---TLLIVSH 347
LD + L ++ + + T+++ SH
Sbjct: 154 GLDPIGIQELRELIRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 54/227 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR------HIASRDLKVP------PNIDILYCEQE 211
N +L I G ++GP+G GK+TLLR I S DL V P +D QE
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 212 V--------VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ LTA+E+V+ ++ ++
Sbjct: 79 AGMVFQQFYLFPHLTALENVMFGPLR------------------------------VRGA 108
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ AE +AR +LA +G + SGG + RV++ARAL ++P L+L DEPT+ L
Sbjct: 109 SKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 324 D---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D + V+ + L T++IV+H+ F + V + +I +D+ ++
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
Length = 240 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 44/220 (20%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL I G L+GP+G GKTT+LR +A L+ P I + + E V S+
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG--LEKPTEGQI-FIDGEDVTH-----RSI 75
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRI---- 275
+ D+ C F S + E LK +G E R +R+
Sbjct: 76 QQRDI--------CMV-----FQSYALFPHMSLGENVGYGLKMLGVPKEE-RKQRVKEAL 121
Query: 276 ----LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
LAG +DR SGG + RV+LARAL ++P +LL DEP ++LD N +
Sbjct: 122 ELVDLAG------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175
Query: 332 DNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ Q + T L V+HDQS V + +I +++ K+
Sbjct: 176 REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
|
Length = 351 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+K+++ +S + ++ NL + G + ++GPNG GK+TL + IA P+ ++
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-----PSYEVT 55
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLA-----ECAKLEAADFSSEQQEQLKEIYEELK 261
DL +E +A + LA E + +F + +
Sbjct: 56 SGTILFKGQDLLELEPDERA--RAGLFLAFQYPEEIPGVSNLEFLRSALNARRS-ARGEE 112
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRA-TKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ + LA LG +R+ + FSGG + R + + +EP L +LDE
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172
Query: 321 NHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHL 362
+ LD++A+ + + + ++ LI++H Q L+ + + +H+
Sbjct: 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 36/204 (17%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ +L I G +VG +G GK+TLL H+ L P + ++L+ Q L+
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLG-GLDNPTSGEVLFNGQ-----SLSK 71
Query: 220 VESVLKADVKRTE---------LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
+ S +A ++ + LL + LE ++ + A+
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK-----------EAKE 120
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVI 329
RA +L +G + R ++ SGG R RV++ARAL +P+L+L DEPT +LD NA I
Sbjct: 121 RAYEMLEKVGLEHRINHRPSE-LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 330 WLD-----NYLQGWKKTLLIVSHD 348
D N + L+V+HD
Sbjct: 180 IFDLMLELNRELN--TSFLVVTHD 201
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+L + G + ++G +G GK+TL+R + +R L P +IL +++ + +
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLL-NR-LIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 224 LKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL 279
+ + + LL LE F E++ + E RA L +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG-----------LEVQGVPKAEREERALEALELV 152
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQ-- 336
G D+ SGG + RV LARAL +P +LL+DE + LD L D L+
Sbjct: 153 GLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 337 -GWKKTLLIVSHD 348
KKT++ ++HD
Sbjct: 212 AKLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 11/208 (5%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L I G GL+G +G GK+TL R + L+ P + + Q DL ++
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG--LEKPAQGTVSFRGQ-----DLYQLDRK 81
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ +R L A + ++ + E L ++ + R +L +G
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LNAVI--WLDNYLQGWK 339
D+ + SGG R+++ARAL ++P L++LDE ++LD L AVI L Q +
Sbjct: 142 EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L ++HD + + C + +D+ ++
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 47/218 (21%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD---DLTAV 220
N +L + G +G+VG +G GKTTL + IA + P + V D D+T
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG---VLEPTSGEVNVR---VGDEWVDMTKP 355
Query: 221 ESVLKADVKR-----------------TELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+ KR + L E LE D + ++K + LK +
Sbjct: 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD----ELARMKAVIT-LKMV 410
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
G D E +A IL D+ S G R RV+LA+ L EP +++LDEPT +
Sbjct: 411 GFD--EEKAEEIL----------DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
Query: 324 D-LNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCN 357
D + V + L+ + +T +IVSHD F+ +VC+
Sbjct: 459 DPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 9e-10
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 51/206 (24%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK------------VPPNID-----IL 206
+ +L + +G+ ++G +G GKTTLL I+ R P D +
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 207 YCEQ-EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
Y Q +++ LT E++ + R L S +++ E L+ +
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILR---LPRK-------SSDAIRKKRVED-VLLRDL-- 131
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
A + G K SGG R RVS+A L +P +L+LDEPT+ LD
Sbjct: 132 ------ALTRIGGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSH 347
LN V L + + +++ H
Sbjct: 177 FTALNLVSTLSQLARR-NRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 9e-10
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 49/220 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA--------- 214
+ + I G R G++G NG GK+TLL+ IA P + +V
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG---IYKPTSGKVKVTGKVAPLIELGAGFD 101
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
+LT E++ L ++++ E +E+ + AE
Sbjct: 102 PELTGRENI---------------YLRGL-ILGLTRKEIDEKVDEI----IEFAE----- 136
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN----AVIW 330
LG D+ K +S G R++ + A ++EP +LLLDE D +
Sbjct: 137 ----LG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189
Query: 331 LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370
L+ ++ KT+++VSHD + C+ I L+ ++
Sbjct: 190 LNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME 228
|
Length = 249 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 1e-09
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 48/195 (24%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLK-----VPPNIDILYCEQEVVAD-DLTAVESVLKADVK 229
G+VGPNG GKTT + +A LK V P + I Y Q + D D T VE +L++
Sbjct: 369 GIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPELKISYKPQYIKPDYDGT-VEDLLRS--- 423
Query: 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA 289
D S E I+ L R + D+
Sbjct: 424 -----------ITDDLGSSY------YKSE---------------IIKPLQLERLL-DKN 450
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIV 345
K+ SGG RV++A L + L LLDEP+ HLD L + + + T L+V
Sbjct: 451 VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 346 SHDQSFLDNVCNEII 360
HD +D + + ++
Sbjct: 511 DHDIYMIDYISDRLM 525
|
Length = 590 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQ 349
SGG R RV+LARA+ ++P LL LDEPT+ LD + +D ++ L ++V+HD
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206
Query: 350 SFLDNVCNEIIHLDQQKL 367
L + + + L K+
Sbjct: 207 DSLLTIADRVAVLADGKV 224
|
Length = 263 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 60/205 (29%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++ N S+ G L + +L + G ++GPNG GK+TLLR + S +L P + ++
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-SGELS-PDSGEVR 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEA---------ADFSSEQQEQLKEIY 257
+ + AD EL A+ A F+ E
Sbjct: 61 LNGRPL-------------ADWSPAEL----ARRRAVLPQHSSLSFPFTVE--------- 94
Query: 258 EELKAIGAD---SAEPRARRILAGLGFSRAMQ--------DRATKNFSGGWRMRVSLARA 306
E+ A+G + ++A A+ R SGG + RV LAR
Sbjct: 95 -EVVAMGRAPHGLSRAEDDALVA-----AALAQVDLAHLAGRDYPQLSGGEQQRVQLARV 148
Query: 307 L------YIEPTLLLLDEPTNHLDL 325
L P LLLDEPT+ LDL
Sbjct: 149 LAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L I G L GP+G GKTTLL+ + + I A E V
Sbjct: 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-------------AGEDV 66
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAE--PRARR 274
+ ++ LL + DF +L + +YE L+ G E R
Sbjct: 67 NRLRGRQLPLLRRRIGVVFQDF------RLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 275 ILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
L +G ++ +A F SGG + RV++ARA+ P LLL DEPT +LD +
Sbjct: 121 ALRQVG----LEHKA-DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175
Query: 331 LDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQ 364
+ + L+ K T+++ +HD S +D V + +I LD
Sbjct: 176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 266 DSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
A RA + LA +G + ++A + SGG + RV++ARAL +EP ++L DEPT+
Sbjct: 127 AEAIERAEKYLAKVG----IAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 323 LD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD + V+ + L +T+++V+H+ F +V + +I L Q
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
|
Length = 256 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
E + I LG + +R + SGG + RV++ARAL + P +LLLDEP + LD+
Sbjct: 107 ERKVLEIAEMLGIDHLL-NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165
Query: 329 IWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
L L+ +K T+L V+HD + +++ + KL +FKK
Sbjct: 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-09
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 360 IHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEV 419
+ L+ KL YKGNYS + + ++ +++ K +EKQ+K IK+L+ + K K
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAK-- 58
Query: 420 LTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456
+ +S+++ ++ E I+KP E K F
Sbjct: 59 ------QAQSRIKALEK----MERIEKPVEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 270 PRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
A + LA +G + DRA + SGG + RV+LARAL P LLLLDEP LD
Sbjct: 112 DAALQALAAVGLA----DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
Query: 327 AVIWLDNYLQG-WKK---TLLIVSHDQS 350
I + + ++ W++ T+L+V+HD S
Sbjct: 168 TRIEMQDLIESLWQQHGFTVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
N SGG R R+ +ARAL P++L+LDE T+ LD +D+ L+ T +IV+H S
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673
Query: 351 FLDNVCNEIIHLDQQK 366
+ + C+EII L++ K
Sbjct: 674 TIRD-CDEIIVLERGK 688
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 11/208 (5%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N +L + +G L+G +G GK+TL R + L+ P ++ + + L +
Sbjct: 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG--LESPSQGNVSWRGE-----PLAKLNRA 82
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+ +R + + A + +E ++E L ++ RA +L +
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD 142
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AVIWLDNYLQGWKK 340
++ D+ SGG RV LARAL +EP LL+LDE ++LDL VI L LQ
Sbjct: 143 SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202
Query: 341 T-LLIVSHDQSFLDNVCNEIIHLDQQKL 367
T L ++HD ++ C ++ +D ++
Sbjct: 203 TACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 147 IKVEN----FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK+ N F K N +L + G+ YG++G +G GK+TL+R + L+ P +
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTS 59
Query: 203 IDILYCEQEVVADDLTAV-ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
++ V DLT + S L ++ ++ + L SS + EL
Sbjct: 60 GSVI-----VDGQDLTTLSNSELTKARRQIGMIFQHFNL----LSSRTVFGNVALPLELD 110
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
D + + +LA +G D N SGG + RV++ARAL P +LL DE T+
Sbjct: 111 NTPKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 322 HLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEIIHLDQQKL 367
LD + L+ + L L+++H+ + +C+ + + +L
Sbjct: 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 48/263 (18%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP------- 201
V+N ++ + + NL I +GP+G GK+T LR + VP
Sbjct: 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRT------------ELLAECAKLEAADFSSEQ 249
+ID + +V + D V +L+A V + +A KL ++
Sbjct: 68 DIDGI----DVYSVDTNVV--LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGL---AKN 118
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARA 306
+++L EI E+ L +G + DR + SGG + R+ +ARA
Sbjct: 119 KKKLDEIVEK---------------SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163
Query: 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQ 364
+ ++PT+LL+DEP + LD A ++N +Q KK T+++V+H V + +
Sbjct: 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223
Query: 365 QKLYYYKGNYSMFKKMYAQKSKE 387
++ Y +FK + K+K
Sbjct: 224 GRIVEYNTTQEIFKNPQSSKTKR 246
|
Length = 251 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 11/209 (5%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V S S G + + + G G+VG +G GK+TLL +A R P +
Sbjct: 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTAT 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA- 265
Y + +L + + + RTE D + I E L AIGA
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119
Query: 266 --DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ A+ L + D + FSGG + R+ +AR L P L+ +DEPT L
Sbjct: 120 HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179
Query: 324 DLNAVIWLDNYLQGWKKTL----LIVSHD 348
D++ L + L+G + L +IV+HD
Sbjct: 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 58/230 (25%), Positives = 85/230 (36%), Gaps = 64/230 (27%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI-------------A 193
I+ EN S + NL I G L+GP+G GKTT L+ I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 194 SRDLKVPPNI----DILYCEQEV-------VADDLTAVESVLKADVKRTELLAECAKLEA 242
D+ + I Y Q++ VA+++ V +L D +R +
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIK---------- 111
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
K E L +G D +E DR SGG + RV
Sbjct: 112 -----------KRADELLDLVGLDPSEYA---------------DRYPHELSGGQQQRVG 145
Query: 303 LARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHD 348
+ARAL +P +LL+DEP LD + + KT++ V+HD
Sbjct: 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195
|
Length = 309 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 27/184 (14%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
N + S LF + + G + GPNG GKTTLLR +A L P + ++ +
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG--LLRPDSGEVRWN 60
Query: 209 EQEVVADDLTAVESVL----KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ ++L +K E AA Q + I + L A+G
Sbjct: 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVG 116
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
E D S G + R++LAR L +LDEPT LD
Sbjct: 117 LTGFE-----------------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Query: 325 LNAV 328
V
Sbjct: 160 KAGV 163
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 24/240 (10%)
Query: 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE--- 221
N +A G + L+GP+G GK+T+LR + + + I +V + L +
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-------QVEGEQLYHMPGRN 71
Query: 222 -SVLKADVKRTELLAECAKLEAADFS-SEQQEQLKEIYEE---LKAIGADSAEPRARRIL 276
++ AD K + + F+ + L + E + + AE RA +L
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL 131
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
+G + D SGG + RV++ARAL + P ++L DE T+ LD V + N ++
Sbjct: 132 DMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 337 GW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
T+L+V+H+ F + + D+ ++ +F+ Q +ER +EF
Sbjct: 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR----QPKEERTREF 246
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 38/216 (17%)
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA--VESVL 224
L A G +VGP+G GK+TLL IA + P + +L +V A V +
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFE--TPQSGRVLINGVDVTAAPPADRPVSMLF 76
Query: 225 KA-------DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
+ V++ L L+ ++E ++ ++ L +G E R L
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLK---LTAEDRQAIEVA---LARVGLAGLEKRLPGEL- 129
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNY 334
SGG R RV+LAR L + +LLLDEP LD ++ L
Sbjct: 130 ----------------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173
Query: 335 L-QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
L K T+L+V+H + ++ LD ++
Sbjct: 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 5e-09
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL + G L+GP+G GKTT LR I +R + P V L + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAI-NRMHDLTPG-------ARVTGRILLDGQDI 73
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLG 280
V + + + LK G D A R L G
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 281 FSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337
++DR SGG + R+ +ARAL +EP +LL+DEPT+ LD + +++ +
Sbjct: 134 LWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193
Query: 338 WKK--TLLIVSHD 348
KK T++IV+H+
Sbjct: 194 LKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 50/244 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
++V+N S+S + V A + + G G+VG +G GK+ L + I L P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPNA 60
Query: 203 I----DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQ-------- 250
+IL+ +++ L K K+ + + Q
Sbjct: 61 RIVGGEILFDGKDL-----------LSLSEKELR------KIRGKEIAMIFQDPMTSLNP 103
Query: 251 -----EQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRATKN----FSGGWRMR 300
+Q+ E+ K + A+ RA +L +G +R K+ SGG R R
Sbjct: 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQR 161
Query: 301 VSLARALYIEPTLLLLDEPTNHLDL---NAVIWLDNYLQ-GWKKTLLIVSHDQSFLDNVC 356
V +A AL + P LL+ DEPT LD+ ++ L LQ L++++HD + +
Sbjct: 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA 221
Query: 357 NEII 360
+ +
Sbjct: 222 DRVA 225
|
Length = 316 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-09
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
++EN S G N +L + G LVGPNG GK+TLLR IA L P + +IL
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG--LLKPTSGEILI 58
Query: 208 CEQEVVADDLTAV 220
+++ L +
Sbjct: 59 DGKDIAKLPLEEL 71
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 25/229 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT---LLRHIASRDLKVPPNI 203
+ +N + + KG + + +L + +G GL+GPNG GKTT ++ I RD
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD------- 56
Query: 204 DILYCEQEVVADDLTAVESVLKADVKR-TELLAECAKLEAADFSS-EQQEQLKEIYEELK 261
++ DD L A +R L + EA+ F + L + +
Sbjct: 57 -----AGNIIIDDEDISLLPLHARARRGIGYLPQ----EASIFRRLSVYDNLMAVLQIRD 107
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ A+ E RA ++ ++D ++ SGG R RV +ARAL P +LLDEP
Sbjct: 108 DLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFA 166
Query: 322 HLDLNAVIWLDNYLQGWKKT---LLIVSHDQSFLDNVCNEIIHLDQQKL 367
+D +VI + ++ + + +LI H+ VC + Q L
Sbjct: 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215
|
Length = 241 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 7e-09
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
V I + S S + + + IA G +GL+GPNG GK+T+ R + + P+
Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM---ISPDRG 59
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ +VL V LA A F + E + E L G
Sbjct: 60 KI---------------TVLGEPVPSRARLARVAIGVVPQFDNLDPE--FTVRENLLVFG 102
Query: 265 ---ADSAEPRARRILAGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
S I + L F+R + D SGG + R++LARAL +P LL+LDEP
Sbjct: 103 RYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162
Query: 320 TNHLDLNA--VIWLD-NYLQGWKKTLLIVSHDQSFLDNVCNEI 359
T LD +A +IW L KT+L+ +H + +C+ +
Sbjct: 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 42/199 (21%)
Query: 169 IANGRRYGLVGPNGHGKTTLLRHIASR---DLKVPPNIDILYCEQEVVADDLTAVESVLK 225
I +G G++GPNG GKTT ++ +A D ++ + Y Q + D VE +L+
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLR 423
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM 285
+ ++ + ++ F +E I+ L +
Sbjct: 424 SAIR--------SAFGSSYFKTE--------------------------IVKPLNLEDLL 449
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKT 341
+R SGG RV++A AL E L LLDEP+ +LD + + +++ +KT
Sbjct: 450 -ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT 508
Query: 342 LLIVSHDQSFLDNVCNEII 360
L+V HD +D V + +I
Sbjct: 509 ALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKADVKRTELL 234
L+GP+G GKTTLLR +A + P + I+ ++V V L + V ++
Sbjct: 1 LLGPSGCGKTTLLRLLAG--FEQPDSGSIMLDGEDVTNVPPHLRHINMVFQS-------- 50
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK--- 291
A F E+ + LK AE R+L L + +++ A +
Sbjct: 51 -------YALFPHMTVEE--NVAFGLKMRKVPRAE-IKPRVLEALRLVQ-LEEFADRKPH 99
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSH 347
SGG + RV+LARAL +P +LLLDEP + LD + L+ ++ T + V+H
Sbjct: 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
Query: 348 DQS 350
DQ
Sbjct: 160 DQE 162
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 9e-09
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS-RDLKVPP 201
I+V + ++ + NL I + L+GP+G GK+TLLR + DL
Sbjct: 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL---- 59
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIYEE 259
I E EV+ D +++ V EL + F Q+ IY+
Sbjct: 60 -IPGARVEGEVLLDG----KNIYDPKVDVVELRRRVGMV----F---QKPNPFPMSIYDN 107
Query: 260 ----LKAIGADSAE--PRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIE 310
L+ G E L ++DR K+ SGG + R+ +ARAL ++
Sbjct: 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167
Query: 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
P +LL+DEPT+ LD + + ++ + KK T++IV+H
Sbjct: 168 PEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-09
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 61/208 (29%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT-------LLRH------IA 193
+ EN + S K + + +L + +G GL+GPNG GKTT L+R +
Sbjct: 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64
Query: 194 SRDL-KVPPN----IDILYCEQE-------VVADDLTAVESVLKADVKRTELLAECAKLE 241
D+ K+P + + I Y QE V D++ AV + + D+K+ E
Sbjct: 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE--------- 115
Query: 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301
++E+L + EE + L S+A SGG R RV
Sbjct: 116 -------RKEELDALLEEFH--------------ITHLRDSKAYS------LSGGERRRV 148
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVI 329
+ARAL P +LLDEP +D AVI
Sbjct: 149 EIARALAANPKFILLDEPFAGVDPIAVI 176
|
Length = 243 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 33/211 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + G + NL + +G ++GP+G GKTTLL IA VP +
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF---VPYQHGSI 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ + V V + + LL + F + L +
Sbjct: 59 TLDGKPVEGPGAERGVVFQNE----GLLPWRNVQDNVAFGLQ-----------LAGVEKM 103
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-- 324
A ++L +G A + R SGG R RV +ARAL P LLLLDEP LD
Sbjct: 104 QRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
Query: 325 -------LNAVIWLDNYLQGWKKTLLIVSHD 348
L +W Q K +L+++HD
Sbjct: 163 TREQMQTLLLKLW-----QETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 9e-09
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 57/166 (34%)
Query: 177 LVGPNGHGKTTLLRHIA-------------SRDL-KVPPN----IDILYCEQEV-VADDL 217
L+G NG GKTTLL+ I D+ +PP+ + I Y + + L
Sbjct: 34 LLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---ELKAIGADSAEPRARR 274
T VE L LL A Q+ L+E+YE LK R
Sbjct: 94 T-VEENL--------LLG----AYARRDKEAQERDLEEVYELFPRLKER---------RN 131
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
AG SGG + +++ARAL P LLLLDEP+
Sbjct: 132 QRAG-------------TLSGGEQQMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 67/298 (22%), Positives = 106/298 (35%), Gaps = 81/298 (27%)
Query: 126 FTI--SQMEKTGGQLAALENAVDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPN 181
FT+ S EK G A D++ N + G D + +L+I G LVG +
Sbjct: 308 FTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRS 367
Query: 182 GHGKTTL---------------------LRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
G GK+TL L L+ + Q+VV + T
Sbjct: 368 GSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR----QVALVSQDVVLFNDTIA 423
Query: 221 ESVL---KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
++ R E+ A A DF + L IG +
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT------PIGENGV--------- 468
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWL 331
SGG R R+++ARAL + +L+LDE T+ LD + A L
Sbjct: 469 --------------LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA--L 512
Query: 332 DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSMFKKM 380
+ +QG +T L+++H S ++ + I+ +D + L G Y+ M
Sbjct: 513 ERLMQG--RTTLVIAHRLSTIEKA-DRIVVMDDGRIVERGTHNELLARNGLYAQLHNM 567
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYLQGWKKTL 342
DR SGG + RV+LARAL +EP +LLLDEP LD WL + K T
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 343 LIVSHDQSFLDNVCNEIIHLDQ 364
+ V+HDQ V + ++ + Q
Sbjct: 191 VFVTHDQEEAMEVADRVVVMSQ 212
|
Length = 353 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 26/175 (14%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
LF + + G + GPNG GKT+LLR +A L P ++L+ + +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--LARPDAGEVLWQGEPIRRQRDEYH 73
Query: 221 ESVL----KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
+ +L + +K TEL A E F + + L
Sbjct: 74 QDLLYLGHQPGIK-TELTAL----ENLRFYQ--------------RLHGPGDDEALWEAL 114
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
A +G + D + S G + RV+LAR L +LDEP +D V L
Sbjct: 115 AQVGLAGFE-DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
|
Length = 204 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVKR 230
G +GL+G NG GKTT + +L + V + D T A +S+L
Sbjct: 1965 GECFGLLGVNGAGKTTTFK--------------MLTGDTTVTSGDATVAGKSILTNISDV 2010
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290
+ + C + +A D +E L +Y L+ + A+ E A + LG S DR
Sbjct: 2011 HQNMGYCPQFDAIDDLLTGREHLY-LYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLA 2068
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347
+SGG + ++S A AL P L+LLDEPT +D A L N + + +++ SH
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 348 DQSFLDNVCNEI 359
+ +C +
Sbjct: 2129 SMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 51/204 (25%), Positives = 72/204 (35%), Gaps = 60/204 (29%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ I G GLVG +G GK+TL R I
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLI------------------------------- 59
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI---LAGLG 280
LE I E K I S E R R+ L +G
Sbjct: 60 --------------LGLEEPTSGE--------ILFEGKDITKLSKEERRERVLELLEKVG 97
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK 340
R SGG R R+ +ARAL + P L++ DEP + LD++ + N L+ ++
Sbjct: 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
Query: 341 ----TLLIVSHDQSFLDNVCNEII 360
T L +SHD S + + + I
Sbjct: 158 ELGLTYLFISHDLSVVRYISDRIA 181
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 49/241 (20%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKT----TLLRHIASRDLK 198
+ + N S++ V A + I G LVG +G GK+ ++L + S
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA-A 65
Query: 199 VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQE------- 251
P+ IL+ +++ L A E L+ + QE
Sbjct: 66 AHPSGSILFDGEDL----LAASERQLRG-------------VRGNKIGMIFQEPMTSLNP 108
Query: 252 ------QLKEIYEELKAIGADSAEPRARRIL--AGLGFSRAMQDRATKNFSGGWRMRVSL 303
QL E+ + + +A RA +L G+ D SGG R RV +
Sbjct: 109 LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMI 168
Query: 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQS----FLDNV 355
A AL EP LL+ DEPT LD+ + + L+ + L L ++HD F D V
Sbjct: 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228
Query: 356 C 356
Sbjct: 229 Y 229
|
Length = 534 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++VEN + + + + G +GL+GPNG GKTT +R I I+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL----------GII 50
Query: 207 YC-EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQ-QEQLKEIYEELKAIG 264
EV+ D + + A R L E E + + +QL + +LK +
Sbjct: 51 LPDSGEVLFDG----KPLDIAARNRIGYLPE----ERGLYPKMKVIDQLVYL-AQLKGLK 101
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ A R L L S ++ + S G + +V A+ +P LL+LDEP + LD
Sbjct: 102 KEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 325 -LNAVIWLD--NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+N + D L KT+++ +H ++ +C+ ++ L++
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL--------YCEQEVVAD 215
N + I +G ++GPNG GK+TLLR + SR L P + + Y +EV
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTL-SR-LMTPAHGHVWLDGEHIQHYASKEVARR 82
Query: 216 -DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
L A + D+ EL+A F+ ++E + + + ++A G
Sbjct: 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH------- 135
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+ D++ SGG R R +A L E ++LLDEPT LD++ I L
Sbjct: 136 ----------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185
Query: 335 L------QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
L +G+ TL V HD L+ C HL
Sbjct: 186 LSELNREKGY--TLAAVLHD---LNQACRYASHL 214
|
Length = 265 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQS 350
SGG R R++LARALY +P L++LDEP ++LD L + K T+++++H S
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 351 FLDNV 355
L +V
Sbjct: 534 ALASV 538
|
Length = 580 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 65/290 (22%), Positives = 119/290 (41%), Gaps = 33/290 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+V+N + G ++ N + I G G++G +G GK+ L+ + D P + I+
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 207 Y----CE-------QEVVADDLTAVESVLK---------ADVKRTELLAECAKLEAADFS 246
Y CE V + L+ +D R + A + F+
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 247 -SEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
L + E L+ IG A RA ++ + S + A ++ SGG + RV L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA-RDLSGGEKQRVVL 179
Query: 304 ARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEI 359
AR L EP L L DEPT LD A + + + K ++++ SH ++++ ++
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 360 IHLDQQKLYYYKGNYSMFKKMYAQKSK--ERMKEFEKQEK--RIKELKAH 405
I L+ ++ +G ++ + E+ E E E +++ +
Sbjct: 240 IWLENGEI-KEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKR 288
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 33/206 (16%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV-------- 223
GR G +GPNG GK+T ++ I + L P + + C ++V+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMK-IITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
L D+ E L A + +Q +++E+ E L GL R
Sbjct: 86 LYLDMYVREYLQFIAGIYGMKGQLLKQ-RVEEMIE-----------------LVGL---R 124
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ--GWKKT 341
Q + S G+R RV LA+AL +P +L+LDEPT LD N ++ + N ++ G KT
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++ +H ++ +C+ +I +++ K+
Sbjct: 185 IILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+ +L + G +G++G +G GK+TL+R I L+ P + +L ++
Sbjct: 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCING--LERPTSGSVLVDGTDLT---------- 70
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAEPRARRIL 276
+ EL ++ F Q L + ++E L+ G AE R+L
Sbjct: 71 ---LLSGKELRKARRRI-GMIF---QHFNLLSSRTVFENVALPLEIAGVPKAE-IEERVL 122
Query: 277 AGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
L ++D+A SGG + RV +ARAL P +LL DE T+ LD +
Sbjct: 123 ELLELV-GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QS 178
Query: 334 YLQGWKK-------TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L + T+++++H+ + +C+ + +++ ++
Sbjct: 179 ILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 24/222 (10%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
++N S + + NL I G+ Y ++G +G GK+TLL I L+ + +
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL--LEKFDSGQVYLN 58
Query: 209 EQEVVADDLTAVESVLKADVKRTE---LLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
QE + S + +R + L A +E +E E+ ++ + K +
Sbjct: 59 GQETP-----PLNSKKASKFRREKLGYLFQNFALIE-----NETVEENLDLGLKYKKLSK 108
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFS--GGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ + L +G + K + GG + RV+LARA+ P L+L DEPT L
Sbjct: 109 KEKREKKKEALEKVGLN---LKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSL 165
Query: 324 DL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
D + V+ L L KT++IV+HD + + +I L
Sbjct: 166 DPKNRDEVLDLLLELNDEGKTIIIVTHDPE-VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+L IA G + ++G +G GK+T +R + L P I + +++ V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIF-----IDGENIMKQSPV 63
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR 283
+V+R ++ + A F Q + EL + +A +L +G
Sbjct: 64 ELREVRRKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 284 AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQ 336
+ R SGG + RV LARAL EP +LL+DE + LD + + L LQ
Sbjct: 122 -YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 337 GWKKTLLIVSHD 348
KT++ ++HD
Sbjct: 181 ---KTIVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 147 IKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I+ + S G+ + N N + R ++GPNG GK+TL RH I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG----------I 53
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG- 264
L V L E + K +++ E K F + + E+ A G
Sbjct: 54 LKPTSGSV---LIRGEPITKENIR------EVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104
Query: 265 ------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
++ R L LG ++DR + SGG + RV++A + +EP +L+LDE
Sbjct: 105 INLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
Query: 319 PTNHLD 324
PT LD
Sbjct: 164 PTAGLD 169
|
Length = 277 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 63/262 (24%), Positives = 114/262 (43%), Gaps = 59/262 (22%)
Query: 132 EKTGGQLAALENAV-DIKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLL 189
+ L N DI + + S S G+++ + +L I + +VG +G GK+TL
Sbjct: 458 FINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517
Query: 190 R-------------HIASRDLKVPPNID-------ILYCEQEVVADDLTAVESVL---KA 226
+ + LK +ID I Y QE + +E++L K
Sbjct: 518 KLLVGFFQARSGEILLNGFSLK---DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ 286
+V + E+ A C ++ EI ++++ + LG+ +
Sbjct: 575 NVSQDEIWAAC--------------EIAEIKDDIENMP--------------LGYQTELS 606
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIWLDNYLQGWKKTLLIV 345
+ + + SGG + R++LARAL + +L+LDE T++LD + ++N L KT++ V
Sbjct: 607 EEGS-SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV 665
Query: 346 SHDQSFLDNVCNEIIHLDQQKL 367
+H S ++II LD K+
Sbjct: 666 AHRLSVAKQS-DKIIVLDHGKI 686
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 53/249 (21%)
Query: 113 KKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANG 172
K + L + ++ K GQ + + + + ++FV
Sbjct: 12 KNPQKAFKLLAKGKSKEEILKKTGQTVGVNDV------SLDVRE--GEIFV--------- 54
Query: 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA----DDLTAVESVLKADV 228
++G +G GK+TLLR I +R + P + + + +A +L + + V
Sbjct: 55 ----IMGLSGSGKSTLLRCI-NR--LIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107
Query: 229 -KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA--GLGFSRAM 285
+ LL LE F E Q + EE RA L GL
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----------RAAEALELVGLE---GW 153
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY-----LQG-WK 339
+ + SGG + RV LARAL ++P +LL+DE + LD +I + LQ +
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD--PLIRREMQDELLRLQAELQ 211
Query: 340 KTLLIVSHD 348
KT++ ++HD
Sbjct: 212 KTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 46/222 (20%)
Query: 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224
A+ + + G +G GKTTL+R IA L P E E+V +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG--LTRPD-------EGEIVLNG-------- 58
Query: 225 KADVKRTELLAECAKLEAADFSSEQQE-----QLKEIYEELKAIG--------ADSAEPR 271
L + K E++ Q ++ L G A +E R
Sbjct: 59 -------RTLFDSRK--GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERR 109
Query: 272 AR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---N 326
R++ LG + R SGG + RV++ RAL P LLL+DEP LD
Sbjct: 110 ISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
Query: 327 AVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++ +L+ + +L VSH + + + ++ L+ ++
Sbjct: 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 146 DIKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV--PPN 202
+I+ EN + S + + + N I G +VGP G GKTTL+ + ++ P
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQK 57
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
IL ++ ++ S++ V + L +E +E+ E K
Sbjct: 58 GQILIDGIDIRDISRKSLRSMI-GVVLQDTFLFSGTIMENIRLGRPNATD-EEVIEAAKE 115
Query: 263 IGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
GA + L G+ + + N S G R +++ARA+ +P +L+LDE T
Sbjct: 116 AGAH-------DFIMKLPNGYDTVLGENG-GNLSQGERQLLAIARAMLRDPKILILDEAT 167
Query: 321 NHLDL-------NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++D A L+ ++G +T +I++H S + N ++I+ LD K+
Sbjct: 168 SNIDTETEKLIQEA---LEKLMKG--RTSIIIAHRLSTIKNA-DKILVLDDGKI 215
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 47/232 (20%)
Query: 168 LIANGRRYGLVGPNGHGKTTLLRHIASR-------------DLKVPPNIDILYCEQEVVA 214
+ + G ++GP+G GK+TLL +A R + K P IL V
Sbjct: 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK--PTKQILKRTGFVTQ 147
Query: 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR 274
DD+ L + E L C+ L ++Q+ K + A+S
Sbjct: 148 DDI------LYPHLTVRETLVFCSLLRLPKSLTKQE----------KILVAES------- 184
Query: 275 ILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW 330
+++ LG ++ +F SGG R RVS+A + I P+LL+LDEPT+ LD A
Sbjct: 185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
Query: 331 LDNYLQGWK---KTLLIVSHD-QSFLDNVCNEIIHLDQQK-LYYYKGNYSMF 377
L L KT++ H S + + + ++ L + + L++ KG+ +M
Sbjct: 245 LVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
NL + G LVGP+G GK+TL + + P + IL ++ V
Sbjct: 360 NLTVRPGETVALVGPSGAGKSTLFQLLLR--FYDPQSGRIL-------------LDGVDL 404
Query: 226 ADVKRTELLAECAKL--EAADFSSEQQEQLK----EIYEELKAIGADSAEPRARRILAGL 279
+ EL A A + + F++ E ++ + +E A +A A ++ L
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAA--HAHEFISAL 462
Query: 280 --GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAV-IWLDN 333
G+ + +R SGG R R+++ARA+ + +LLLDE T+ LD V L+
Sbjct: 463 PEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521
Query: 334 YLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
++G +T LI++H + + + I+ +DQ ++
Sbjct: 522 LMKG--RTTLIIAHRLATVLK-ADRIVVMDQGRI 552
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 158 GNDLFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216
G+ VN + +A+G +GL+GPNG GK+T+ R I I +L
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--------- 102
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
V + + R ++ + L+ +F+ + + Y + ++ P
Sbjct: 103 -VPVPARARLARARIGVVPQFDNLDL-EFTVRENLLVFGRYFGMSTREIEAVIPSL---- 156
Query: 277 AGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW-- 330
L F+R + D + SGG + R++LARAL +P LL+LDEPT LD +A +IW
Sbjct: 157 --LEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
Query: 331 LDNYL-QGWKKTLLIVSHDQSFLDNVCNEI 359
L + L +G KT+L+ +H + +C+ +
Sbjct: 215 LRSLLARG--KTILLTTHFMEEAERLCDRL 242
|
Length = 340 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVP-PNIDIL 206
F++ +G I+ G++GPNG GKTT ++ +A + + +
Sbjct: 13 FTLEVEGGS--------ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS 64
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
Y Q + AD V +L + K F +E
Sbjct: 65 YKPQYIKADYEGTVRDLLSSITKD--------FYTHPYFKTE------------------ 98
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-- 324
I L + + DR SGG RV++A L + + LLDEP+ +LD
Sbjct: 99 --------IAKPLQIEQIL-DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149
Query: 325 --LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
L A + + + +KT +V HD +D + + +I + +
Sbjct: 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 32/216 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N+ I+ G LVGP+G GK+TLL+ I +L P + I Q+V
Sbjct: 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDV----------- 65
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQL---KEIYEE----LKAIGADSAEPRAR--R 274
+D++ + L Q +L + +YE L+ G E R R
Sbjct: 66 --SDLRGRAI----PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
L +G S + + SGG + RV++ARA+ PT+L+ DEPT +LD + + N
Sbjct: 120 ALELVGLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL 178
Query: 335 LQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ K T+++ +H + +D + +I L++ KL
Sbjct: 179 LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 33/192 (17%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238
GP+G GK+TLL+ +AS L P + +L+ +++ S LK ++ R ++ + CA
Sbjct: 40 GPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDI---------STLKPEIYRQQV-SYCA 87
Query: 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA-RRILAGLGFSRAMQDRATKNFSGGW 297
+ F + L ++ I +P L + + SGG
Sbjct: 88 QTPTL-FGDTVYDNLIFPWQ----IRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGE 142
Query: 298 RMRVSLARALYIEPTLLLLDEPTNHLD------LNAVIWLDNYLQGWKKTLLIVSHDQSF 351
+ R+SL R L P +LLLDE T+ LD +N +I Y++ +L V+HD+
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII--HRYVREQNIAVLWVTHDK-- 198
Query: 352 LDNVCNEIIHLD 363
+EI H D
Sbjct: 199 -----DEINHAD 205
|
Length = 225 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 260 LKAIGADSAEPRAR-RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
LK G AE R + +A L + +R SGG R RV+LARAL +P + LLDE
Sbjct: 100 LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159
Query: 319 PTNHLD--LNAVI--WLDNYLQGWKKTLLIVSHDQ 349
P ++LD L ++ + + T + V+HDQ
Sbjct: 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
|
Length = 338 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 51/164 (31%), Positives = 69/164 (42%), Gaps = 53/164 (32%)
Query: 176 GLVGPNGHGKTTLLRHIA-------------SRDL-KVPPN----IDILYCEQEV-VADD 216
GL+GPNG GKTT I +D+ K+P + + I Y QE +
Sbjct: 30 GLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ-LKEIYEELKAIGADSAEPRARRI 275
LT E++L A LE S +++E+ L+E+ EE
Sbjct: 90 LTVEENIL-------------AVLEIRGLSKKEREEKLEELLEEFH-------------- 122
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
+ L S+A SGG R RV +ARAL P LLLDEP
Sbjct: 123 ITHLRKSKASS------LSGGERRRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 60/226 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV--------PPN---IDILYC 208
+L +A+G ++GP+G GK+TLL IA S +KV P + +L+
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 209 EQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
E + A LT +++ L +K ++EQQE++ +
Sbjct: 78 ENNLFAH-LTVRQNIGLGLHPGLK---------------LNAEQQEKVVDA--------- 112
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
A+++ G+ DR + SGG R RV+LAR L +LLLDEP + LD
Sbjct: 113 ------AQQV--GIA---DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + ++TLL+V+H S + ++I + Q K+
Sbjct: 162 LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 27/224 (12%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
N+ I G ++G NG GK+TL +++ LK P + IL+ + +
Sbjct: 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGI-LK-PSSGRILFDGKPI------------- 70
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK------AIGADSAEPRARRILAGL 279
D R L+ + + Q +Y+++ + D R L
Sbjct: 71 -DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT 129
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYL 335
G ++D+ T S G + RV++A L +EP +L+LDEPT LD V L
Sbjct: 130 GIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
+ T++I +HD + C+ + + + ++ +F +
Sbjct: 189 KELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLL----RHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ + I N +G++GP+G GK+TLL R I D K+ + +LY +++ D
Sbjct: 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87
Query: 220 VESVLKADVKRTELLAECAKLEAADF-----SSEQQEQLKEIYEELKAIGADSAEPRARR 274
+ + ++ + + + +++ ++K+I EE
Sbjct: 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE--------------- 132
Query: 275 ILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
L +G + + DR SGG + R+++ARAL ++P +LL+DEPT+ +D+ +
Sbjct: 133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI 192
Query: 332 DNYLQGWKK--TLLIVSHD 348
+ + K ++IVSH+
Sbjct: 193 EKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 260 LKAIGADSAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
LK G AE R +L +G + + + SGG + RV+LARAL P LLLLD
Sbjct: 101 LKNRGMGRAEVAERVAELLDLVGLPGS-ERKYPGQLSGGQQQRVALARALATSPGLLLLD 159
Query: 318 EPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQ 349
EP + LD L ++ ++ T ++V+HDQ
Sbjct: 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 52/164 (31%)
Query: 176 GLVGPNGHGKTTLLRHIA-------------SRDL-KVPP----NIDILYCEQE-VVADD 216
L+G NG GKTTLL+ I RD+ +PP I Y + + +
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89
Query: 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL 276
LT VE L LL A+ A + +L+ +YE PR +
Sbjct: 90 LT-VEENL--------LLGAYARRRAKR-----KARLERVYELF---------PRLKE-- 124
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ + SGG + +++ARAL P LLLLDEP+
Sbjct: 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----NAVIWLDNYLQGWKKTL 342
+R SGG + RV++ARAL EP +LLLDEP LDL + + L + T
Sbjct: 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 343 LIVSHDQS 350
+ V+HDQ
Sbjct: 185 VFVTHDQE 192
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVS 346
+ SGG R RVS+A L P+LL LDEPT+ LD L + L +T++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSI 168
Query: 347 HD-QSFLDNVCNEIIHLDQQKLYYY 370
H S + + ++++ L Q ++ Y+
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYF 193
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+I+ + S S+ G ++ + ++ G Y +VGP+G GK+TL++ I L P I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSI 60
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
L ++ D+ + + ++ L + + + + + + K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLF---------EGTVKDNIEYGPMLKGEKNVDV 111
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ L+ +G ++ R KN SGG RVS+AR L P +LLLDEPT+ LD
Sbjct: 112 EY-------YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
|
Length = 241 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 63/204 (30%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHI------------- 192
I+ EN + G V N NL IA G L+GP+G GKTT ++ I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 193 ASRDLKVPPNID----ILYCEQEV-------VADDLTAVESVLKADVKRTELLAECAKLE 241
D++ ++ I Y Q++ V +++ V +LK
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---------------- 104
Query: 242 AADFSSEQQEQLKE-IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
+E+++E E L +G D AE DR SGG + R
Sbjct: 105 ------WPKEKIRERADELLALVGLDPAEFA---------------DRYPHELSGGQQQR 143
Query: 301 VSLARALYIEPTLLLLDEPTNHLD 324
V +ARAL +P LLL+DEP LD
Sbjct: 144 VGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 59/241 (24%)
Query: 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL----- 206
F G + N +L I G G+VG +G GK+TL + I + VP N +L
Sbjct: 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI--QRFYVPENGRVLVDGHD 65
Query: 207 --------------YCEQEVVADDLTAVESVLKADVKRT-ELLAECAKLEAA-DFSSEQQ 250
QE V + + +++ AD + E + E AKL A DF SE
Sbjct: 66 LALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISE-- 123
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE 310
L E Y+ + +G A GL SGG R R+++ARAL
Sbjct: 124 --LPEGYDTI--VGEQGA---------GL--------------SGGQRQRIAIARALIHN 156
Query: 311 PTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
P +L+ DE T+ LD + I + + G +T++I++H S + N + II +++ +
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHDICAG--RTVIIIAHRLSTVKNA-DRIIVMEKGR 213
Query: 367 L 367
+
Sbjct: 214 I 214
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 35/225 (15%)
Query: 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230
G+ G++GPNG GK+T L+ I + +LK PN+ +D + + V+K +
Sbjct: 99 PGKVVGILGPNGIGKSTALK-ILAGELK--PNL----GRY----EDPPSWDEVIKR-FRG 146
Query: 231 TELLAECAKLEAADFSSEQQEQ--------LK-EIYEELKAIGADSAEPRARRILAGLGF 281
TEL KL + + + Q +K ++ E LK + + ++ LG
Sbjct: 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERG---KFDEVVERLGL 203
Query: 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQG 337
+ DR SGG RV++A AL + + DEP+++LD LNA + +
Sbjct: 204 ENVL-DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED 262
Query: 338 WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382
K +++V HD + LD + ++ +H+ LY G Y + K +
Sbjct: 263 -GKYVIVVEHDLAVLDYL-SDFVHI----LYGEPGVYGVVSKPKS 301
|
Length = 591 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 3e-07
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 23/213 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NI 203
I++ENFS N + I + ++GP+G GKTTLLR I + +P
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG 63
Query: 204 DILYCEQEVVADDLTAVE------SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
I + Q++ L E V + + + + + +L I
Sbjct: 64 KIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIV 123
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
EE A E ++ ++ SGG + R+ +ARAL +EP ++LLD
Sbjct: 124 EESLKKAALWDEVKSE------------LNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 318 EPTNHLDLNAVIWLDNYLQ--GWKKTLLIVSHD 348
EPT+ LD A ++ L+ T++IV+H+
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 66/230 (28%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS------------ 194
+++ N + S G + +L I G + L+G +G GK+TLLR +A
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 195 -RDLK-VPP---NIDILYCEQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFS 246
DL VPP I++++ + + +T +++ LK D KL A+ +
Sbjct: 80 GVDLSHVPPYQRPINMMF-QSYALFPHMTVEQNIAFGLKQD-----------KLPKAEIA 127
Query: 247 SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD---RATKNFSGGWRMRVSL 303
S E L ++ MQ+ R SGG R RV+L
Sbjct: 128 SRVNEMLGLVH---------------------------MQEFAKRKPHQLSGGQRQRVAL 160
Query: 304 ARALYIEPTLLLLDEPTNHLD--LNAVIWLD--NYLQGWKKTLLIVSHDQ 349
AR+L P LLLLDEP LD L + L+ + L+ T ++V+HDQ
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL---NAVIW-LDNY 334
G + D+A S G R++LARAL LLLLDEPT LD V+ L+
Sbjct: 473 QGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 335 LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS-------MFKKMYAQKSKE 387
+ +T L+V+H L ++I + ++ +G+Y+ +F + A + +E
Sbjct: 532 SRR--QTTLMVTHQLEDLAQ-WDQIWVMQDGQI-VQQGDYAELSQAGGLFATLLAHRQEE 587
Query: 388 R 388
Sbjct: 588 I 588
|
Length = 588 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I +EN S S + + +L I G ++GPNG GK+TLL + SR LK + +I
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEIT 59
Query: 207 YCEQEVVA---DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
E+ + +L S+LK E + +L
Sbjct: 60 IDGLELTSTPSKELAKKLSILK---------------------QENHINSRLTVRDLVGF 98
Query: 264 G-------ADSAEPRARRILAGLGFSRAM--QDRATKNFSGGWRMRVSLARALYIEPTLL 314
G + E R R I + + DR SGG R R +A L + +
Sbjct: 99 GRFPYSQGRLTKEDR-RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157
Query: 315 LLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHL 362
LLDEP N+LD+ + + L+ KT+++V HD +F + I+ L
Sbjct: 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL 209
|
Length = 252 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
V + G N N+++ + L+GP+G GK+T LR P N +
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGN----HY 74
Query: 209 EQEVV--ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA 262
E E++ D+ ++L +V E+ ++ + + K I+E L+
Sbjct: 75 EGEIILHPDN----VNILSPEVDPIEV-----RMRISMVFQKPNPFPKSIFENVAYGLRI 125
Query: 263 IGADSA---EPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLL 316
G E R L ++DR N SGG + R+ +ARAL +P +LL
Sbjct: 126 RGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
DEPT+ LD A ++ + K T+LIV+H+
Sbjct: 186 DEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)
Query: 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219
+ ++AN + L GP+G GKT+L+ IA L P E + +
Sbjct: 12 NFALDANFTLPARGITALFGPSGSGKTSLINMIAG--LTRPD-------EGRIELNGRVL 62
Query: 220 VES----VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI 275
V++ L + +R + + A+L F + L+ S + ++
Sbjct: 63 VDAEKGIFLPPEKRRIGYVFQDARL----FPH------YTVRGNLRYGMWKSMRAQFDQL 112
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----NAVIWL 331
+A LG + DR SGG + RV++ RAL P LLL+DEP LDL + +L
Sbjct: 113 VALLGIEHLL-DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 332 DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+ +L VSH + + + ++ L+ K
Sbjct: 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGK 206
|
Length = 352 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 256 IYEELKAIGADSAEPRARRI----LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311
I + + D ++ R I +A +G + A D+ SGG + RV++ARAL I P
Sbjct: 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRP 133
Query: 312 TLLLLDEPTNHLD-LNAVIWLDNYLQGWKK---TLLIVSHD 348
+LLLDEP LD L + +Q W++ T+L+V+HD
Sbjct: 134 KVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 287 DRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--T 341
DR KN SGG + R+ +AR L +EP +LLLDEPT+ LD A +++ +Q + T
Sbjct: 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 342 LLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKE 391
++IV+H+ V + + + L + +F K+RM E
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF-----TNPKDRMTE 278
|
Length = 286 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
N SGG + RVSLARA+Y + L D+P + +D VI + L+ KT ++
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN--KTRIL 817
Query: 345 VSHDQSFLDNVCNEIIHLD--------QQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQE 396
V+H S+L V I+ Q+L G ++ F + YA ++ E +
Sbjct: 818 VTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLE----D 873
Query: 397 KRIKELKAHGQSKKQAEKK--TKEVLTRKQEKNKSKLQKADEDQG----PTELIQK 446
+ G+ K E +V+ ++ ++ S DQ + +QK
Sbjct: 874 SWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQK 929
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 256 IYEELKAIGAD-SAEPRARRILAGL---GFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311
I EE I SA R + LA + G DR FSGG R R+++ARAL ++P
Sbjct: 114 ILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDP 173
Query: 312 TLLLLDEPTNHLDL 325
+++ DEP + LD+
Sbjct: 174 DVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-07
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNID 204
+ ++ ++ + + + +L I GR L+G NG GK+TLL+ +A DL P
Sbjct: 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGA 60
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
+ + + + L A+++ A + +L + A+ A FS+ + L Y + G
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLA--RLRAVLPQAAQ-PAFAFSAREIVLLGR-YPHARRAG 116
Query: 265 ADSAEPR--ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL---------YIEPTL 313
A + A + LA G + A+ R SGG RV AR L P
Sbjct: 117 ALTHRDGEIAWQALALAG-ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175
Query: 314 LLLDEPTNHLDL 325
LLLDEPT LDL
Sbjct: 176 LLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 9e-07
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 31/232 (13%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
I++EN S S G N NL+I G G++G NG GK+TL H+ L P +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG--LLRPQKGKV 59
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
L V + D + L KL F + + + + EE A G
Sbjct: 60 L-------------VSGIDTGDFSK---LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103
Query: 266 DS-----AEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
++ E R R R LA +G + + R+ K SGG V+LA L +EP L+ DE
Sbjct: 104 ENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
Query: 319 PTNHLDLN---AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
T+ LD + AV+ L KT++ ++H+ L + + II +D+ K+
Sbjct: 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKI 213
|
Length = 274 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-07
Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 60/228 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV--------PPN---IDILYC 208
+L + G ++GP+G GK+TLL IA S ++ + PP + +L+
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 209 EQEVVADDLTAVESV---LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
E + A LT +++ L +K EQ+E+++ +G
Sbjct: 79 ENNLFAH-LTVAQNIGLGLSPGLKLNA---------------EQREKVEAA---AAQVG- 118
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
LAG R SGG R RV+LAR L E +LLLDEP + LD
Sbjct: 119 ----------LAGFL------KRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 325 --LNAVIWLDNYLQGWKK-TLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
++ L + L +K TLL+V+H + + ++ LD ++
Sbjct: 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210
|
Length = 231 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 1e-06
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I+V N S + +L + G YGL+GPNG GKTTL++ I
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236
L GP+G GK+TLL+ I + + P IL ++ S LK + L
Sbjct: 33 LTGPSGAGKSTLLKLI-YGEER-PTRGKILVNGHDL---------SRLKG--REIPFLRR 79
Query: 237 CAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRILA-----GLGFSRAMQD 287
+ DF + +YE L+ IG E R RR+ GL +A
Sbjct: 80 QIGVVFQDFRLLPD---RTVYENVALPLRVIGKPPREIR-RRVSEVLDLVGLK-HKARAL 134
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIW-LDNYLQGWKK---TLL 343
+ SGG + RV++ARA+ +P +LL DEPT +LD + W + + + T+L
Sbjct: 135 PSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLD-PDLSWEIMRLFEEINRLGTTVL 191
Query: 344 IVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372
+ +HD ++ + + ++ L+ +L +
Sbjct: 192 MATHDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 17/82 (20%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-------IWLDNYLQG-WK--KT 341
N SGG + R+SLARA+Y + + LLD+P L+AV I+ +N + G KT
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDP-----LSAVDAHVGRHIF-ENCILGLLLNNKT 180
Query: 342 LLIVSHDQSFLDNVCNEIIHLD 363
++V+H L + ++I+ LD
Sbjct: 181 RILVTHQLQLLPH-ADQIVVLD 201
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK GA E R +L L + DR K SGG R RV++ R L EP++
Sbjct: 100 LKLAGAKKEEINQRVNQVAEVLQ-LA---HLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 315 LLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK---- 366
LLDEP ++LD + I + + +T++ V+HDQ + ++I+ LD +
Sbjct: 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215
Query: 367 -----LYYYKGN 373
LY+Y N
Sbjct: 216 GKPLELYHYPAN 227
|
Length = 369 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 39/223 (17%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V S + + + G G+VG +G GKTTLL+ I+ R + P+ +
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR---LTPDAGTV 63
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK----------EI 256
D + ++ +R LL ++ Q I
Sbjct: 64 ----TYRMRDGQPRDLYTMSEAERRRLLR-------TEWGFVHQNPRDGLRMQVSAGGNI 112
Query: 257 YEELKAIGA-------DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
E L AIGA A+ + L R D + FSGG + R+ +AR L
Sbjct: 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDL--DRI--DDLPRTFSGGMQQRLQIARNLVT 168
Query: 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHD 348
P L+ +DEPT LD++ L + L+G + L +IV+HD
Sbjct: 169 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 42/193 (21%)
Query: 142 ENAVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP 200
N VD++ +F+ +GN +F N +L + G+ ++GP+G GKTTLLR I ++
Sbjct: 5 ANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG---QIA 58
Query: 201 PNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL-------EAADFSSEQQEQ 252
P+ +IL+ + + A S L KR +L + L + + + Q
Sbjct: 59 PDHGEILFDGENIPA----MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ 114
Query: 253 LKE------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306
L + +L+A+G R SGG R +LARA
Sbjct: 115 LPAPLLHSTVMMKLEAVGL-----------------RGAAKLMPSELSGGMARRAALARA 157
Query: 307 LYIEPTLLLLDEP 319
+ +EP L++ DEP
Sbjct: 158 IALEPDLIMFDEP 170
|
Length = 269 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351
SGG + RV++ARAL P +L+LDE T+ LD + + L W ++T+L+++H S
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211
Query: 352 LDNVCNEIIHLDQQKL 367
++ ++I+ LD ++
Sbjct: 212 VERA-DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 17/215 (7%)
Query: 175 YGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234
Y ++G +G GK+TL+ H + + + D E + K+ +
Sbjct: 55 YFIIGNSGSGKSTLVTHFNGL---IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNF 111
Query: 235 AECAKLEAADFSSEQQEQLKEIYEELKAIG-------ADSAEPRARRILAGLGFSRAMQD 287
E + + F + + K+ E+ G A+ A+ L +G + +
Sbjct: 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTL 342
R+ SGG + RV++A L I+P +L+ DEPT LD + LD KT+
Sbjct: 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN--KTV 229
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
+++H + V +E+I +D+ K+ Y +F
Sbjct: 230 FVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
|
Length = 320 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+ N + N + +L I + L+GP+G GK+TLLR +R L++
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTF-NRLLELNE----- 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA- 265
E V + ++ DV E+ E + F IY+ + AIG
Sbjct: 59 --EARVEGEVRLFGRNIYSPDVDPIEVRREVGMV----FQYPNPFPHLTIYDNV-AIGVK 111
Query: 266 --------DSAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLL 314
+ R L ++DR N SGG R R+ +ARAL ++P +L
Sbjct: 112 LNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKIL 171
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
L+DEPT ++D ++ L KK T+++V+H
Sbjct: 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 144 AVDIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
A+ IK FS +K N NL + G +VG G GKT+L+ + ++PP
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG---ELPPR 670
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
D + VA + V + A V+ L + F E+ YE +A
Sbjct: 671 SDASVVIRGTVAY-VPQVSWIFNATVRDNILFG-------SPFDPER-------YE--RA 713
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
I +A +L G G + +R N SGG + RVS+ARA+Y + + D+P +
Sbjct: 714 IDV-TALQHDLDLLPG-GDLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 323 LDLN-AVIWLDNYLQG--WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS---- 375
LD + D ++ KT ++V++ FL V + II L + + +G Y
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV-DRII-LVHEGMIKEEGTYEELSN 828
Query: 376 ---MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQ---AEKKTKEVLTRKQEKNKS 429
+F+K+ K M+E+ ++ ++ + + K +K ++ KS
Sbjct: 829 NGPLFQKLMENAGK--MEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKS 886
Query: 430 KLQKADE 436
L K +E
Sbjct: 887 VLIKQEE 893
|
Length = 1622 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 54/203 (26%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDL--------KVPPN---IDILYC 208
+L + G R ++GP+G GK+TLL IA S L PP+ + +L+
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
E + + LT +++ L KL ++ Q+E+L I
Sbjct: 79 ENNLFSH-LTVAQNIGLG-------LNPGLKL-----NAAQREKLHAI------------ 113
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--LN 326
AR++ G+ + R SGG R RV+LAR L E +LLLDEP + LD L
Sbjct: 114 ---ARQM--GIE---DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
Query: 327 AVI--WLDNYLQGWKKTLLIVSH 347
+ + Q + TLL+VSH
Sbjct: 166 QEMLTLVSQVCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 23/106 (21%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWK 339
+R K SGG R R+++ARAL +P +L+LDE T+ LD A L+ ++
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA---LERLMKN-- 187
Query: 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK---------LYYYKGNYSM 376
+T +++H S ++N + I+ L+ K L G Y+
Sbjct: 188 RTTFVIAHRLSTIENA-DRIVVLEDGKIVERGTHEELLAQGGVYAK 232
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 283 RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ M R + SGG + ++++ARAL P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR K+ SGG + R+ +ARAL +EP +LL+DEPT+ LD + + ++ +Q KK
Sbjct: 136 VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD 195
Query: 341 -TLLIVSHD 348
T++IV+H+
Sbjct: 196 YTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQ 349
SGG + R+++ARAL +P +L+LDE T+ LD + LQ + T+L+++H
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAEC----EQLLQESRSRASRTVLLIAHRL 674
Query: 350 SFLDNVCNEIIHLDQQKL 367
S ++ ++I+ L + +
Sbjct: 675 STVER-ADQILVLKKGSV 691
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 51/211 (24%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-------E 209
KG L + A ++A +VG +G GK+TL+ +IL C
Sbjct: 25 KGISLDIYAGEMVA------IVGASGSGKSTLM--------------NILGCLDKPTSGT 64
Query: 210 QEVVADDLTAVESVLKADVKRT---------ELLAECAKLEAADFSSEQQEQLKEIYEEL 260
V D+ +++ A ++R LL+ ++ Q ++ +Y
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH--------LTAAQNVEVPAVY--- 113
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ RA+ +L LG ++ + ++ SGG + RVS+ARAL ++L DEPT
Sbjct: 114 AGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEPT 172
Query: 321 NHLDLNA---VIWLDNYLQGWKKTLLIVSHD 348
LD ++ V+ + + L+ T++IV+HD
Sbjct: 173 GALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
Length = 648 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 65/230 (28%)
Query: 147 IKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
+ + N S S + V N +L + G + L+G +G GK+TLL+ + DL P +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLT-GDL-KPQQGE 58
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
I V S+ ++ L I
Sbjct: 59 ITLDGVPV----------------------------------SDLEKALS------SLIS 78
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ P F +++ + FSGG R R++LAR L + ++LLDEPT LD
Sbjct: 79 VLNQRPYL--------FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
Query: 325 -------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ + L+ KTL+ ++H + ++++ ++I+ L+ K+
Sbjct: 131 PITERQLLSLIF---EVLKD--KTLIWITHHLTGIEHM-DKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV--- 220
+ N G+ Y +VG G GK+TL+++I + L P V DD+T
Sbjct: 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINA--LLKPTT-------GTVTVDDITITHKT 75
Query: 221 -ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILA 277
+ ++ KR ++ + + + + + E +EI K D + A R+L
Sbjct: 76 KDKYIRPVRKRIGMVFQFPESQLFEDTVE-----REIIFGPKNFKMNLDEVKNYAHRLLM 130
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNY 334
LGFSR + ++ SGG ++++ L + P +++LDEPT LD + V+ L
Sbjct: 131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
Query: 335 LQ-GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LQ KT+++VSHD + + +E+I + + +
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 49/199 (24%)
Query: 146 DIKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I+V+ F G + + +L I G +VGP+G GK+TLLR + + P +
Sbjct: 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE--TPESG 508
Query: 204 DILYCEQEVVADDLTAVES----VLKADVKRTELLAECAKLEAADFSSEQQEQLK--EIY 257
+ Y Q++ D+ AV VL Q +L I+
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVL------------------------QNGRLMSGSIF 544
Query: 258 EELKAIGA----DSAEPRARRILAGLGFS-RAMQ-------DRATKNFSGGWRMRVSLAR 305
E + A GA D A AR +AGL RAM SGG R R+ +AR
Sbjct: 545 ENI-AGGAPLTLDEAWEAAR--MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601
Query: 306 ALYIEPTLLLLDEPTNHLD 324
AL +P +LL DE T+ LD
Sbjct: 602 ALVRKPRILLFDEATSALD 620
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 62/211 (29%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTT----------------LLRHIASRDLKVPPNID--- 204
+L I G+ LVG +G GK+T LL + RDL N+
Sbjct: 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL----NLRWLR 76
Query: 205 --ILYCEQEVVADDLTAVESVL--KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
I QE V D T E++ K D E+ K DF L + Y+ L
Sbjct: 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMS----LPDGYDTL 132
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G +R ++ SGG + R+++ARAL P +LLLDE T
Sbjct: 133 --VG----------------------ERGSQ-LSGGQKQRIAIARALLRNPKILLLDEAT 167
Query: 321 NHLDLN--AVIW--LDNYLQGWKKTLLIVSH 347
+ LD ++ LD ++G +T ++++H
Sbjct: 168 SALDAESEKLVQEALDRAMKG--RTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 136 GQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+L ++ AV+ + F + +F + + G+ +VGP G GKTTL+ + +
Sbjct: 326 PELPNVKGAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGPTGAGKTTLINLL--Q 382
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK- 254
+ P IL D + +V + ++++ +A + +A F+ +E ++
Sbjct: 383 RVYDPTVGQILI--------DGIDINTVTRESLRKS--IATVFQ-DAGLFNRSIRENIRL 431
Query: 255 --------EIYEELKAIGA-DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305
E+YE KA A D R+ G+ + +R + SGG R R+++AR
Sbjct: 432 GREGATDEEVYEAAKAAAAHDFILKRSN------GYDTLVGERGNR-LSGGERQRLAIAR 484
Query: 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLD 363
A+ +L+LDE T+ LD+ + N + +K T I++H S + N + ++ LD
Sbjct: 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA-DLVLFLD 543
Query: 364 QQKL 367
Q +L
Sbjct: 544 QGRL 547
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR N SGG + R+ +AR L IEP ++L+DEPT+ LD + + ++ +Q KK
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216
Query: 341 -TLLIVSHD 348
+++IV+H+
Sbjct: 217 YSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
++++N S ++ + NL I +G L+GP+G GK+TLLR IA
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50
|
Length = 338 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 283 RAMQ--------DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+AM+ DR + SGG R R LA L + ++LLDEPT +LD+N + L
Sbjct: 121 QAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180
Query: 335 LQGWK---KTLLIVSHD 348
++ KT++ V HD
Sbjct: 181 MRELNTQGKTVVTVLHD 197
|
Length = 255 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-06
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
K N ++ + N+ I + L+G +G GK+T LR + K+
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK------ 57
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---- 263
D L +E DVK +++A + + +K IYE +
Sbjct: 58 ------IDGLVEIEG---KDVKNQDVVA--LRKNVGMVFQQPNVFVKSIYENISYAPKLH 106
Query: 264 ----GADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEPTLLLL 316
D E L +G ++D+ +N SGG + R+ +ARAL I+P LLLL
Sbjct: 107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166
Query: 317 DEPTNHLD 324
DEPT+ LD
Sbjct: 167 DEPTSALD 174
|
Length = 246 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
SGG + R++ AR L +P + LDE T+ LD + L L+ T++ V H S
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149
Query: 351 FLDNVCNEIIHLD 363
L + ++ LD
Sbjct: 150 -LWKFHDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-06
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG + R+ +ARA+ + P++LL+DEP + LD + ++ + KK T++IV+H+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNM- 205
Query: 351 FLDNVCNEIIHLDQQKLYYYKGN---YSMFKKMYAQKSKERMKEF 392
+ + + ++Y G Y KK++ KE + +
Sbjct: 206 ------QQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNY 244
|
Length = 250 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA------VIWLDNYLQGWKKTLLIV 345
FSGG + R + + L +EP L +LDEP + LD++A VI N L+ K++LI+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI---NKLREEGKSVLII 160
Query: 346 SHDQSFLDNVCNEIIHL 362
+H Q LD + + +H+
Sbjct: 161 THYQRLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 51/213 (23%), Positives = 74/213 (34%), Gaps = 43/213 (20%)
Query: 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
++ EN S LF + + + G + GPNG GKTTLLR +A L P ++
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG--LLRPDAGEV 59
Query: 206 LY------CEQEVVADDLTAV--ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY 257
+ +E L + + +K TEL A E L
Sbjct: 60 YWQGEPIQNVRESYHQALLYLGHQPGIK-----TELTAL--------------ENLH--- 97
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
+ LA +G ++D S G + RV+LAR L +LD
Sbjct: 98 -FWQRFHGSGNAATIWEALAQVGL-AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155
Query: 318 EPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
EP LD V L L+ +H
Sbjct: 156 EPFTALDKEGVALLTA---------LMAAHAAQ 179
|
Length = 209 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
E++ + R L +G + DR SGG + RV LARA E +LL+DE
Sbjct: 132 EMQGMPKAERRKRVDEQLELVGLA-QWADRKPGELSGGMQQRVGLARAFATEAPILLMDE 190
Query: 319 PTNHLD-LNAVIWLDNYLQ---GWKKTLLIVSHD 348
P + LD L D L+ KKT++ VSHD
Sbjct: 191 PFSALDPLIRTQLQDELLELQSKLKKTIVFVSHD 224
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 35/218 (16%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++ + +S ++ NL I + L+GP+G GK+TLLR + +R ++ L
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLR-VFNRLIE-------L 55
Query: 207 YCEQEVVADDLTAVESVLKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYE---- 258
Y E V + + + K DV +R +++ F I+E
Sbjct: 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMV----------FQIPNPIPNLSIFENVAL 105
Query: 259 --ELKAIGADSAE--PRARRILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEP 311
+L + E R R L ++DR SGG + R+ +ARAL +P
Sbjct: 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165
Query: 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
+LL DEPT +LD +++ KK T+++V+H
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL 217
G LF + NL I +G +G G GK+T+++ + L VP + V DD
Sbjct: 20 GRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLL--NGLHVP-------TQGSVRVDD- 68
Query: 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LK---------AIGAD 266
+++ + K ++ K+ E Q ++EE LK + +
Sbjct: 69 ----TLITSTSKNKDIKQIRKKVGLVFQFPESQ-----LFEETVLKDVAFGPQNFGVSQE 119
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
AE AR LA +G S ++ ++ SGG RV++A L +EP +L+LDEPT LD
Sbjct: 120 EAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQ 349
SGG + RV++ RAL P LLL+DEP LDL L YL+ + + L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS- 188
Query: 350 SFLDNVCNEIIHL 362
LD EI+ L
Sbjct: 189 --LD----EILRL 195
|
Length = 352 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 41/151 (27%)
Query: 177 LVGPNGHGKTTLLRHIASR-DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
++G G G +TLL+ +A+R + V DI Y + + E A
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-------NGIPYKE------------FA 78
Query: 236 ECAKLEAADFSSEQQEQLKEI-YEELKAIGADSAEPRARRILAGLGFSRAMQ-DRATKNF 293
E E + SE+ + E L F+ + + +
Sbjct: 79 EKYPGEII-YVSEEDVHFPTLTVRET------------------LDFALRCKGNEFVRGI 119
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG R RVS+A AL ++L D T LD
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I+VEN + + N NL I L+GP+G GK+T +R + + +P
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP----GF 59
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKL--EAADFSSEQQEQLKEIYEE----L 260
E + D + V EL + + + F K I++ L
Sbjct: 60 RHEGHIYLDG----VDIYDPAVDVVELRKKVGMVFQKPNPFP-------KSIFDNVAYGL 108
Query: 261 KAIG---ADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARALYIEPTLL 314
+ G D E R L ++D+ K+ SGG + R+ +AR + + P ++
Sbjct: 109 RIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
L+DEP + LD + +++ + K+ T++IV+H+
Sbjct: 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDE 318
I S + RR+ A L + D+A KNF SGG + RV +ARA+ +P +LL DE
Sbjct: 106 IAGASGDDIRRRVSAALD-KVGLLDKA-KNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163
Query: 319 PTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368
PT +LD ++ L T+L+ +HD + ++ L L+
Sbjct: 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 56/228 (24%), Positives = 84/228 (36%), Gaps = 48/228 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ ++ S+S G + + + G L+GPNG GKTTL+ I K P +
Sbjct: 6 LYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG---KTRPQEGEV 62
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK----- 261
+ + DLT K R K + ++E L
Sbjct: 63 LFDGDT---DLT------KLPEHRIARAGIGRKFQKP-----------TVFENLTVRENL 102
Query: 262 --AIGAD-----------SAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306
A+ D AE R R +LA +G +DR S G + + +
Sbjct: 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGML 161
Query: 307 LYIEPTLLLLDEPTNHL---DLNAVIWLDNYLQGWKKTLLIVSHDQSF 351
L +P LLLLDEP + + L L G K ++L+V HD F
Sbjct: 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF 208
|
Length = 249 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 61/233 (26%)
Query: 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNID 204
G + + + I G++ +VGP+G GK+T+LR I +D++ +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR---EVT 69
Query: 205 ILYCEQE--VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ + VV D + +++ + +A D +E+ E KA
Sbjct: 70 LDSLRRAIGVVPQDTVLFNDTIGYNIRY-------GRPDATD---------EEVIEAAKA 113
Query: 263 IGADSAEPRARRILA-GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
A + +I+ G+ + +R K SGG + RV++ARA+ P +LLLDE T+
Sbjct: 114 --AQIHD----KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATS 166
Query: 322 HLD----------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD L V +G +T ++++H S + N ++II L
Sbjct: 167 ALDTHTEREIQAALRDV------SKG--RTTIVIAHRLSTIVN-ADKIIVLKD 210
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-----YLQGWKKTLLIVS 346
N SGG R R+ +ARALY ++ LD+P + LD++ L +LQ K+TL++V+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 347 HDQSFL 352
H +L
Sbjct: 200 HKLQYL 205
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQ 349
FSGG + R + + +EP L +LDE + LD++A+ + N L+ K++ +IV+H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205
Query: 350 SFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383
LD + + +H+ Q G++++ K++ Q
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQ 239
|
Length = 248 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 43/167 (25%)
Query: 177 LVGPNGHGKTTLLRHIASR---DLKVPPNIDI------LYCEQEVVA----DD-----LT 218
++G +G GKTTL+ +A R +K ++ + + + A DD LT
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 219 AVESVL-KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILA 277
E ++ +A ++ + E++E++ E+ + L +
Sbjct: 116 VREHLMFQAHLR----------MPRRVTKKEKRERVDEVLQALGLR-------KCANTRI 158
Query: 278 GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
G K SGG R R++ A L +P LL DEPT+ LD
Sbjct: 159 G-------VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 37/236 (15%)
Query: 132 EKTGGQLAALE---NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTL 188
E+ GGQ A + A + N ++ G + ++ L+GP G GKTT
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 189 LRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK-ADV----KRTELLAECAKLEAA 243
LR + + KV D L S+ DV +R +L
Sbjct: 64 LRTLNRMNDKVS--------GYRYSGDVLLGGRSIFNYRDVLEFRRRVGML--------- 106
Query: 244 DFSSEQQEQLKEIYEELKAIGADSAEPR------ARRILAGLGFSRAMQDRATKN---FS 294
F + + L + A PR A+ L +G A++DR + + S
Sbjct: 107 -FQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS 165
Query: 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHD 348
GG + + LAR L + P +LLLDEPT+ LD ++ +++ + T++IV+H+
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
|
Length = 276 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
RAR +LA LG + S R V +ARAL + +L+LDEPT L
Sbjct: 125 RARELLARLGLDIDPDTLV-GDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177
|
Length = 500 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 43/237 (18%)
Query: 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
V+I+ F+ + N N + G+ G+ GP G GK+TLL I R V
Sbjct: 315 DVNIR--QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI-QRHFDVSEG- 370
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELL-----AECAKLEAADFSSEQQEQ---LKE 255
DI + + + L + S L A V +T L A L D + ++ E L
Sbjct: 371 DIRFHDIPLTKLQLDSWRSRL-AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLAS 429
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+++++ + P+ G+ + +R SGG + R+S+ARAL + +L+
Sbjct: 430 VHDDILRL------PQ--------GYDTEVGERGVM-LSGGQKQRISIARALLLNAEILI 474
Query: 316 LDEPTNHLDLNAV-------IWLDNYLQ-GWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
LD+ L+AV I L N Q G +T++I +H S L +EI+ +
Sbjct: 475 LDDA-----LSAVDGRTEHQI-LHNLRQWGEGRTVIISAHRLSALTEA-SEILVMQH 524
|
Length = 569 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
D+A SGG + R+ +ARA+ +EP +LL+DEPT+ LD A ++ + KK +++I
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279
Query: 345 VSHDQSFLDNVCNEIIHLDQ 364
V+H + + +E + Q
Sbjct: 280 VTHSMAQAQRISDETVFFYQ 299
|
Length = 329 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 25/98 (25%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG + R+ +ARAL + LLLLDEPT LD L L + Q KT+L+++
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL---LAEHAQN--KTVLMIT 531
Query: 347 HDQSFL---DNVC----NEII----H--LDQQKLYYYK 371
H + L D +C +II H L Q+ YY+
Sbjct: 532 HRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 59/209 (28%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRT 231
G+ G++GPNG GKTT ++ I S +L PN+ E+E D+ VLK + T
Sbjct: 99 GKVTGILGPNGIGKTTAVK-ILSGELI--PNLGDY--EEEPSWDE------VLKR-FRGT 146
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYE-ELKAI----------------------GADSA 268
EL Q K++Y E+K + D
Sbjct: 147 EL----------------QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDER 190
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---- 324
+ ++ LG + DR SGG RV++A AL + DEPT++LD
Sbjct: 191 G-KLDEVVERLGLENIL-DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353
LN + +G K +L+V HD + LD
Sbjct: 249 LNVARLIRELAEG--KYVLVVEHDLAVLD 275
|
Length = 590 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 49/305 (16%)
Query: 144 AVDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
A+ IK FS +K + NL I G +VG G GKT+L I++ ++
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSL---ISAMLGELSHA 670
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+ VA + V + A V+ L +DF SE+ +A
Sbjct: 671 ETSSVVIRGSVAY-VPQVSWIFNATVRENILFG-------SDFESERY---------WRA 713
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
I +A +L G + + +R N SGG + RVS+ARA+Y + + D+P +
Sbjct: 714 IDV-TALQHDLDLLPGRDLTE-IGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
Query: 323 LDLNAVIWLDNY-----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY--- 374
LD + + + L+G KT ++V++ FL + + I L + + +G +
Sbjct: 771 LDAHVAHQVFDSCMKDELKG--KTRVLVTNQLHFLPLM--DRIILVSEGMIKEEGTFAEL 826
Query: 375 ----SMFKKMY--AQKSKERMKEFEKQEKRIK-------ELKAHGQSKKQAEKKTKEVLT 421
S+FKK+ A K + E +K ++ + K+ + VL
Sbjct: 827 SKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLV 886
Query: 422 RKQEK 426
+++E+
Sbjct: 887 KQEER 891
|
Length = 1495 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 49/220 (22%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNIDILYCEQ 210
+ I G+ +VG +G GK+T+LR I +D++ L
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV-TQQSLRRAI 339
Query: 211 EVVADDLTAVESVLKADVKRT-ELLAECAKLEAADFSSEQQ--EQLKEIYEELKAIGADS 267
+V D + ++K AA+ + + L E Y+
Sbjct: 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD--------- 390
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
G+G +R K SGG + RV++AR + P +L+LDE T+ LD +
Sbjct: 391 ---------TGVG------ERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Query: 328 --VIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
I L G +T L+++H S + + +EII LD
Sbjct: 435 EQAIQAALREVSAG--RTTLVIAHRLSTIIDA-DEIIVLD 471
|
Length = 497 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 147 IKVENFSISAKGNDLFV-----NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201
IK E + + + N F + +L + G L+G G GK+TLL+H+
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHL--------- 52
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
N + E +V D+ + + ++K K F + + +E +
Sbjct: 53 NGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR------KKVGVVFQFPESQLFEETVLKDV 106
Query: 262 AIG-------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
A G + AE A L +G + +++ SGG RV++A L +EP +L
Sbjct: 107 AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVL 166
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357
+LDEPT LD A I + + ++ V +D+V +
Sbjct: 167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD 209
|
Length = 288 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
DR + FSGG + R+ +ARAL + P ++LLDEPT+ LD + ++ L K T ++
Sbjct: 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201
Query: 345 VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
V+H+ + ++ L L MF
Sbjct: 202 VTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTL---- 342
D FSGG + R+ +AR L P L+ +DEPT LD++ L + L+G + L
Sbjct: 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 343 LIVSHD 348
+IV+HD
Sbjct: 206 VIVTHD 211
|
Length = 258 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE 310
E L+ + +L + R + ++ +G + +R FSGG R+ +ARAL +E
Sbjct: 123 EPLRTYHPKLSR---QEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILE 179
Query: 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQK 366
P L++ DEP + LD++ + N LQ ++ +L+ ++HD + + H+ +
Sbjct: 180 PKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVK-------HISDRV 232
Query: 367 LYYYKGN 373
L Y G+
Sbjct: 233 LVMYLGH 239
|
Length = 331 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226
L++ G L+G +G GK+TLL +A D D E +V L ++
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLD-------DGSSGEVSLVGQPLHQMD----- 78
Query: 227 DVKRTELLAECAKLEAADF------SSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280
+ R +L A+ F ++ + +L + L+ + + A+ +L LG
Sbjct: 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL---LRGESSRQSRNGAKALLEQLG 135
Query: 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----Q 336
+ + D SGG + RV+LARA P +L DEPT +LD + + L +
Sbjct: 136 LGKRL-DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 337 GWKKTLLIVSHD 348
TL++V+HD
Sbjct: 195 EHGTTLILVTHD 206
|
Length = 228 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARAL +EP +LL+DEP + LD A ++ + K T++IV+H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
|
Length = 253 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 52/204 (25%), Positives = 69/204 (33%), Gaps = 48/204 (23%)
Query: 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
+ + F + +L IA G ++G NG GK+TLL IA
Sbjct: 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAE---------CAKLEAAD--------- 244
I I D+T K+ KR LLA +L +
Sbjct: 63 ILID-------GVDVTK-----KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110
Query: 245 ----FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300
SS E+ + + E A GLG + DR SGG R
Sbjct: 111 KKRGLSSALNERRRSSFRERLAR-------------LGLGLENRLSDRIGL-LSGGQRQA 156
Query: 301 VSLARALYIEPTLLLLDEPTNHLD 324
+SL A P +LLLDE T LD
Sbjct: 157 LSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQ 349
+ SGG + RV +AR L ++P ++LLDEPT+ LD + ++N L + T+++V+H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSM 207
Query: 350 SFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
+ ++ L + MF
Sbjct: 208 HQASRISDKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 285 MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 344
R SGG + RV++ARA+ +P +LLLDE + LD + N L+ ++ L I
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196
Query: 345 ----VSHDQ 349
V+HDQ
Sbjct: 197 TFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208
+ N S G L +L G+ GL+G NG GK+TLL+ + PP+
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ---PPS------ 64
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
E E++ D KA ++ L + +L AA+ + ++ Y A+G A
Sbjct: 65 EGEILLDAQPLESWSSKAFARKVAYLPQ--QLPAAEGMTVRELVAIGRYPWHGALGRFGA 122
Query: 269 EPRARR----ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
R + L GL + + R + SGG R R +A + + LLLDEPT+ LD
Sbjct: 123 ADREKVEEAISLVGL---KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 325 L 325
+
Sbjct: 180 I 180
|
Length = 265 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES- 222
N + + G LVG G GK+TL++H + I I +T
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI-------AGYHITPETGN 77
Query: 223 -VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGL 279
LK K+ L+ + EA F + LK++ K G D A+ +A + L +
Sbjct: 78 KNLKKLRKKVSLVFQFP--EAQLF---ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV 132
Query: 280 GFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK 339
G S + ++ SGG RV++A + EP +L LDEP LD + + ++
Sbjct: 133 GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192
Query: 340 K---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
K T+++V+H+ + ++++ L+ KL
Sbjct: 193 KAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 15/248 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V++ SI + ++ I L+GP+G GK+T LR I + +P
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPS----A 77
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFS--SEQQEQLKEIYEELKAIG 264
E E++ + L ++S + R E+ K S + LK E K++
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 265 ADSAEPRARRILAGLGFSRAMQDR---ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321
+ E L ++DR + + SGG + R+ +AR L ++P +LLLDEP +
Sbjct: 138 DEIVEES----LTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 322 HLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379
LD + ++ + K+ +++IV+H+ V + L Y +F
Sbjct: 194 ALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
Query: 380 MYAQKSKE 387
QK+++
Sbjct: 254 PKQQKTED 261
|
Length = 268 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 55/198 (27%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNI----DILYCEQEVVADDLTAVESVLKADVK--- 229
L+GP+G GK+TLLR I +R + P + I+Y + + V+ L+ ++
Sbjct: 36 LIGPSGSGKSTLLRSI-NRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD--LRKEIGMVF 92
Query: 230 ------------------RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR 271
R + + + L+ A S + I++E+K DSA
Sbjct: 93 QQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG---ASIWDEVKDRLHDSA--- 146
Query: 272 ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331
LG S GG + RV +AR L P ++LLDEPT+ LD + +
Sbjct: 147 -------LGLS------------GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
Query: 332 DNYLQGWKK--TLLIVSH 347
+ L G K T+L+V+
Sbjct: 188 EETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 16/74 (21%)
Query: 288 RATKNFSGG-WRMRVSLARA-LYIEPT------LLLLDEPTNHLDLNAVIWLDNYL---- 335
R+ SGG W+ RV LA L + P LLLLDEP N LD+ LD L
Sbjct: 122 RSVNQLSGGEWQ-RVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180
Query: 336 -QGWKKTLLIVSHD 348
QG +++ SHD
Sbjct: 181 QQG--IAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-05
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-----QGWKKTLLIVSH 347
S G R V +ARAL LL+LDEPT L V L + QG ++ +SH
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG--VAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSH 347
+ SGG RV++A AL T L DEP+ +LD LNA + + KKT L+V H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 348 DQSFLDNVCNEII 360
D + LD + + I
Sbjct: 131 DLAVLDYLSDRIH 143
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 46/192 (23%)
Query: 177 LVGPNGHGKTTLLRHI-------ASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229
+VG NG GKTT++ + + K + L E EV A V+ +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQ----VKLAFENANG 82
Query: 230 RT-ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288
+ + A LE F Q E + + ++LA L
Sbjct: 83 KKYTITRSLAILENVIFCH-QGESNWPLLDMRGRCSG------GEKVLASLII------- 128
Query: 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKT 341
R++LA +L LDEPT +LD L +I +
Sbjct: 129 -----------RLALAETFGSNCGILALDEPTTNLDEENIEESLAEII--EERKSQKNFQ 175
Query: 342 LLIVSHDQSFLD 353
L++++HD+ +D
Sbjct: 176 LIVITHDEELVD 187
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 42/241 (17%)
Query: 147 IKVENFS-ISAKGNDL----FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201
IK+EN + I +G N N+ I +G GL+G G GK+TL++H+ L P
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG--LLKPT 60
Query: 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
+ I+ + D+T + L K+ L+ F + + +E E+
Sbjct: 61 SGKII-----IDGVDITDKKVKLSDIRKKVGLV----------FQYPEYQLFEETIEKDI 105
Query: 262 AIGA-------DSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLARALYIEPTL 313
A G + E R +R + +G +D++ SGG + RV++A + +EP +
Sbjct: 106 AFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165
Query: 314 LLLDEPTNHLD-------LNAVIWL-DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365
L+LDEPT LD LN + L Y T+++VSH + + + II +++
Sbjct: 166 LILDEPTAGLDPKGRDEILNKIKELHKEY----NMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 366 K 366
K
Sbjct: 222 K 222
|
Length = 287 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVS 346
K+ SGG + R+++ARAL EP +LLLDE T+ LD N+ ++ + K KT++ ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 347 H 347
H
Sbjct: 1417 H 1417
|
Length = 1466 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIWLDNYLQGWKKTLLI-VSHD 348
FSGG R RV +A AL P LL+ DEPT LD+ ++ L N L+ T +I ++HD
Sbjct: 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
Query: 349 QSFLDNVCNEII 360
+ +C++++
Sbjct: 222 LGVVAGICDKVL 233
|
Length = 330 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ A+ +AR ++ +G + R+ SGG RV++A L +EP +L+LDEPT LD
Sbjct: 119 EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
IK+ + + + N N+ + ++GP+G GK+TLLR + ++ +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN----RMNDIVSGA 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-- 264
E V+ D+ E++ ++ L + + K I++ + A G
Sbjct: 61 RLEGAVLLDN----ENIYSPNLDVVNLRKRVGMV-----FQQPNPFPKSIFDNV-AFGPR 110
Query: 265 --ADSAEPRARRILAGLGFSRAMQDRATKNF-------SGGWRMRVSLARALYIEPTLLL 315
+A+ R ++ A+ D N SGG + R+ +AR L IEP ++L
Sbjct: 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL 170
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+DEP + LD + + ++ +Q K+ T+ IV+H+
Sbjct: 171 MDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 43/222 (19%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRH-------IASRDLKV 199
I ++N +IS + N I G+ L+GP+G GK+T+LR I LK
Sbjct: 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG 73
Query: 200 PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL--KEIY 257
+L+ ++ + VE V+R + F QQ K IY
Sbjct: 74 ----RVLFDGTDLYDPRVDPVE------VRRRIGMV---------F---QQPNPFPKSIY 111
Query: 258 EELKAIGA---------DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308
E + A GA D R+ R A + + + + SGG + R+ +AR +
Sbjct: 112 ENI-AFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170
Query: 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
IEP ++L+DEP + LD + + ++ + KK T++IV+H+
Sbjct: 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
|
Length = 269 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 74/204 (36%)
Query: 177 LVGPNGHGKTTLL---------------------RHIASRDLKVPPNIDILYCEQEV--- 212
+VGP G GK+TL+ R + L+ NI +++ Q+
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR--RNIAVVF--QDAGLF 421
Query: 213 ---VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAE 269
+ D++ V + D E+ A + +A DF + + + E
Sbjct: 422 NRSIEDNI----RVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGE---------- 467
Query: 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----- 324
R R++ SGG R R+++ARAL +P +L+LDE T+ LD
Sbjct: 468 -RGRQL------------------SGGERQRLAIARALLKDPPILILDEATSALDVETEA 508
Query: 325 -LNAVIWLDNYLQGWKKTLLIVSH 347
+ A LD ++G +T I++H
Sbjct: 509 KVKAA--LDELMKG--RTTFIIAH 528
|
Length = 588 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-05
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 147 IKVEN--FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLR 190
I+ +N FS + + + +L I G + +VGP+G GK+TLL+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLK 46
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGF--SRAMQDRATKNFSGGWRMRVSLARALY 308
EQ+ E + + A A+R+L + ++ + R SGG R RV +A AL
Sbjct: 125 EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184
Query: 309 IEPTLLLLDEPTNHLDLN---AVIWLDNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
P +L+ DEPT LD+ ++ L LQ ++ ++HD + + + ++ + Q
Sbjct: 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
|
Length = 623 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLI 344
+++ SGG + R+ +ARAL I+P +LL+DEP + LD A + ++ + + T+ I
Sbjct: 145 NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204
Query: 345 VSHD 348
V+H+
Sbjct: 205 VTHN 208
|
Length = 259 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 178 VGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL----TAVESVLKADVKRTEL 233
+GP+G GK+T+LR + +R +V P E EV+ D V+ V V+RT
Sbjct: 36 IGPSGCGKSTVLRTL-NRMHEVIPGA---RVEGEVLLDGEDLYGPGVDPVA---VRRTIG 88
Query: 234 LAECAKLEAADFSSEQQEQLKEIYEE----LKAIGADS---AEPRARRILAGLGFSRAMQ 286
+ F I + LK G + + + L G ++
Sbjct: 89 MV---------FQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 287 DRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--T 341
DR K SGG + R+ +ARA+ +EP +LL+DEP + LD + + +++ + K+ T
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT 199
Query: 342 LLIVSHD 348
++IV+H+
Sbjct: 200 IVIVTHN 206
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P +LD+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI----DILYCEQEVVADDLTA 219
N NL I ++GP+G GK+T ++ + + +++ PN+ ++ Y ++ +
Sbjct: 30 NINLSIPENEVTAIIGPSGCGKSTFIKTL-NLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88
Query: 220 VE------SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
VE V + + + + ++ +++L+EI E+ A E + R
Sbjct: 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR 148
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333
L S GG + R+ +ARAL P +LL+DEPT+ LD + ++
Sbjct: 149 LHTQALSLS------------GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196
Query: 334 YLQGWKK--TLLIVSHD 348
+ K+ T++IV+H+
Sbjct: 197 LILKLKEKYTIVIVTHN 213
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 33/223 (14%)
Query: 142 ENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS-RDLKVP 200
+N I+ EN ++ N N+ I L+GP+G GK+T LR + DL
Sbjct: 3 KNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 201 PNID--ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSS--------EQQ 250
I+ ++Y + + +++ +E L+ + + D S + +
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILE--LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDK 120
Query: 251 EQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---FSGGWRMRVSLARAL 307
++L EI E + L ++D+ N SGG + R+ +AR L
Sbjct: 121 KKLDEIVE---------------QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165
Query: 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
IEP ++L+DEPT+ LD + ++ + K+ T++IV+H+
Sbjct: 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
|
Length = 254 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARA+ ++P +LL+DEP + LD + + L+ + KK T++IV+H+
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
|
Length = 267 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
IKVEN ++ N ++ I L+GP+G GK+T +R + +R + N I
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRI- 70
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL----KA 262
E +V + E + + DV EL + F + IY+ + +
Sbjct: 71 --EGKVSIEG----EDIYEPDVDVVELRKNVGMV----FQKPNPFPM-SIYDNVAYGPRI 119
Query: 263 IGADSAEPRA--RRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLD 317
GA+ + L DR + SGG + R+ +AR L ++P ++L D
Sbjct: 120 HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179
Query: 318 EPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
EPT+ LD + +++ + KK T++IV+H+
Sbjct: 180 EPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
SGG + R+ +ARA+ IEP +LLLDEPT+ LD + + ++ + K T++IV+H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLL 343
++ + SGG + R+ +ARAL ++P +LL+DEP LD A + +++ +Q + T++
Sbjct: 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMV 205
Query: 344 IVSHD 348
IVSH+
Sbjct: 206 IVSHN 210
|
Length = 261 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 47/237 (19%)
Query: 129 SQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNA-NLLIANGRRYGLVGPNGHGKTT 187
S + G + +N IK EN + D+ + + + + +G + GPNG GK++
Sbjct: 436 SNLVPGRGIVEYQDNG--IKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSS 493
Query: 188 LLRHIA------SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241
L R + L P + Y Q T + ++ D
Sbjct: 494 LFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPD-------------- 539
Query: 242 AADFSSEQQEQ-------LKEIYEELKAIGADSAEPRARRILA-GLGFSRAMQDRATKNF 293
SSE ++ L++I + ++ IL G+S A+QD
Sbjct: 540 ----SSEDMKRRGLSDKDLEQILDNVQL----------THILEREGGWS-AVQD-WMDVL 583
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350
SGG + R+++AR Y +P +LDE T+ + ++ ++ + + TL VSH +S
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
SGG R R+SLARA+Y + L LLD P HLD+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 263 IGADSAEPRARRILAG-----LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
IG A ++ LA LG + D + S G + + RAL PTLL+LD
Sbjct: 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILD 426
Query: 318 EPTNHLD-LNAVI---WLDNYLQGWKKTLLIVSHDQ 349
EP LD LN + ++D + + LL VSH
Sbjct: 427 EPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462
|
Length = 490 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSH 347
SGG + R+ +AR + +EP ++L+DEPT+ LD A ++ ++ KK T++IV+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N G L+GPNG GK+TL H + P + ++L +
Sbjct: 20 GINFKAEKGEMVALLGPNGAGKSTLFLHF--NGILKPTSGEVLIKGEP------------ 65
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-------DSAEPRARRIL 276
+K D K L E K F + + EE A G + E R + L
Sbjct: 66 IKYDKKS---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEAL 122
Query: 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336
+G +++ + SGG + RV++A L ++P +++LDEPT+ LD + L
Sbjct: 123 KAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181
Query: 337 GWKK---TLLIVSHD 348
K T++I +HD
Sbjct: 182 DLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
+ SGG + R+ +ARA+ EP +LLLDEP + LD A ++ + KK T+ +V+H+
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQS 350
SGG + R+ +AR L + P ++L+DEP + LD A +++ ++ KK T++IV+H+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 71/191 (37%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRT 231
G +VGP G GKTTL R +A R+L PP ++Y
Sbjct: 2 GEVILIVGPPGSGKTTLARALA-RELG-PPGGGVIY------------------------ 35
Query: 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291
++ D E +QL I K
Sbjct: 36 --------IDGEDILEEVLDQLLLIIVGGKKASGSGEL---------------------- 65
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---------LNAVIWLDNYLQGWKKTL 342
R+R++LA A ++P +L+LDE T+ LD L + L T+
Sbjct: 66 ------RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119
Query: 343 LIVSHDQSFLD 353
++ ++D+ L
Sbjct: 120 ILTTNDEKDLG 130
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 55/287 (19%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI-----LYCEQEVVADDLT 218
N + + G G++G NG GK+TL IA + +DI L + LT
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---ELKAIGADSAEPRARRI 275
+E++ EL L +E++KEI E IG +P
Sbjct: 102 GIENI--------ELKGLMMGL--------TKEKIKEIIPEIIEFADIGKFIYQP----- 140
Query: 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLD 332
K +S G + R+ A +++I P +L++DE + D +
Sbjct: 141 --------------VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
Query: 333 NYLQGWKKTLLIVSHDQSFLDNVCNEI--IHLDQQKLY----YYKGNYSMFKKMYAQKSK 386
N + KT+ +SH S + + C + +H Q K Y +Y F K Y Q S
Sbjct: 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSV 246
Query: 387 ERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK 433
E K+F +E++I + + HG ++ + ++ K+ K K ++
Sbjct: 247 EERKDF--REEQISQFQ-HGLLQEDQTGRERKRKKGKKTSRKFKKKR 290
|
Length = 549 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 53/246 (21%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N S N++ NL I G + ++GPNG GK+TL + IA DIL
Sbjct: 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL 67
Query: 207 YCEQEVVADDLTAVESVLKADVKRTEL---LA-----ECAKLEAADF------SSEQQEQ 252
+ + ++ DL E R L LA E + ADF S + +
Sbjct: 68 FKGESIL--DLEPEE--------RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG 117
Query: 253 LKE---------IYEELKAIGADSAEPRARRILAGLGF-SRAMQDRATKNFSGGWRMRVS 302
L E I E+LK +G D + F SR + + FSGG + R
Sbjct: 118 LPELDPLEFLEIINEKLKLVGMDPS------------FLSRNVNE----GFSGGEKKRNE 161
Query: 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQSFLDNVCNEI 359
+ + ++ L +LDE + LD++A+ + N L + ++++++H Q LD + +
Sbjct: 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY 221
Query: 360 IHLDQQ 365
+H+ Q
Sbjct: 222 VHVMQN 227
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 38/171 (22%)
Query: 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR----DLKVPPNIDILYCEQEVVADD 216
L + ++ + G+ ++G G GK+TLL+ + S+ + +V I Y Q+ +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMN 734
Query: 217 LTAVESVLKADVKRTELLAE---CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
T ++L D + LA+ ++LEA D + EI E K +
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEA-DLAQLGGGLETEIGE--KGV---------- 781
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
N SGG + RVSLARA+Y + LLD+P + LD
Sbjct: 782 ------------------NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 64/212 (30%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI----------DIL----------YCEQE 211
G+ GLVGPNG GK+T L+ +A K+ PN+ +IL Y +
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAG---KLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK- 81
Query: 212 VVADDLTA------VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
++ D+ V+ + KA + L L+ D ++ +L E+ ++L+
Sbjct: 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGEL-----LKKKD----ERGKLDELVDQLEL--- 129
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD- 324
R + DR SGG RV++A AL + DEP+++LD
Sbjct: 130 -----------------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353
LNA + + +L+V HD + LD
Sbjct: 173 KQRLNAARLIRELAED-DNYVLVVEHDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 260 LKAIGADSAEPRAR--RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317
L+ G AE +AR +L +G S DR SGG + RV++ARAL P +LL D
Sbjct: 107 LELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 318 EPTNHLD 324
E T+ LD
Sbjct: 166 EATSALD 172
|
Length = 343 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK G AE R RIL L + DR + SGG R RV++ RA+ EP +
Sbjct: 101 LKIRGMPKAEIEERVAEAARIL-ELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156
Query: 315 LLDEPTNHLD 324
L DEP ++LD
Sbjct: 157 LFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 24/215 (11%)
Query: 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKR 230
G+ ++G NG GK+TL + +A + P +IL + + D KR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG---MIEPTSGEILINDHPLHFGDY-------SFRSKR 88
Query: 231 TELLAECAKLEAADFSSEQQEQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRA 289
++ + + S + ++ +I + L+ E R ++I L + D A
Sbjct: 89 IRMI-----FQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA 143
Query: 290 T---KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLI-- 344
+ G + RV+LARAL + P +++ DE LD++ L N + ++ I
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISY 203
Query: 345 --VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
V+ + ++ ++++ + + ++ +
Sbjct: 204 IYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 52/219 (23%)
Query: 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-------VA--------------D 215
L+GPNG GKTT+ + P IL Q + +A
Sbjct: 36 LIGPNGAGKTTVFNCLTG--FYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93
Query: 216 DLTAVESVLKADVK--RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR 273
++T +E++L A + +T L + K A F + E L L+ +G
Sbjct: 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPA--FRRAESEALDRAATWLERVGL-------- 143
Query: 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL------DLNA 327
+R N + G + R+ +AR + +P +L+LDEP L +L+
Sbjct: 144 ---------LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194
Query: 328 VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366
+I T+L++ HD + + + I ++Q
Sbjct: 195 LI--AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
Length = 255 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 32/230 (13%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV--- 220
N + + G +GL+GPNG GKTT R I L P +I + + + +
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMIL--GLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 221 --ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG 278
E L + + L A+L+ EI ++L+A L
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMP--------KAEIQKKLQA------------WLER 117
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY---L 335
L + K S G + ++ A+ EP LL+LDEP + LD V L + L
Sbjct: 118 LEIVGKKTKK-IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176
Query: 336 QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKS 385
+ T++ SH ++ +C+ ++ L + + Y G ++ + +K
Sbjct: 177 KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKR 225
|
Length = 300 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-----IWLDNYLQGWKKTLLIVSHD 348
SGG + +V LAR L +P +L+LDEPT +D+ A + + G K +L++S +
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG--KAVLLISSE 163
Query: 349 QSFLDNVCNEIIHLDQQKL 367
L +C+ I+ + + ++
Sbjct: 164 LDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
+A+ + G LVG NG GK+TL + + I IL + L
Sbjct: 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISIL---GQPTRQAL------ 75
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-------ADSAEPRARRIL 276
+ L+A + E D+S + E++ +G A+ R R+I+
Sbjct: 76 ------QKNLVAYVPQSEEVDWS------FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 277 AGLGFSRAMQD---RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VIW 330
M + R SGG + RV LARA+ + ++LLDEP +D+ +I
Sbjct: 124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS 183
Query: 331 LDNYLQGWKKTLLIVSHDQSFLDNVCN 357
L L+ KT+L+ +H+ + C+
Sbjct: 184 LLRELRDEGKTMLVSTHNLGSVTEFCD 210
|
Length = 272 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
+++++ +S G ++ NL I G + L+GPNG GK+TL + I
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +ARA+ ++P ++L+DEP + LD + + ++ + K+ T++IV+H+
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
I++ N + +L I +G L+GP+G GK+TLLR IA
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49
|
Length = 345 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 147 IKVENFSISAKGNDLFV-NANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKV 199
I++EN S++ + + + + I G R + GP+G GK++L R +A S + +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 200 PPNIDILY 207
P D+L+
Sbjct: 61 PEGEDLLF 68
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
++ SGG + +V LAR L +P +L+LDEPT +D+ A
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGA 436
|
Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 56/220 (25%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD- 215
K +++ + N + G+ Y VG +G GK+T+L+ I L P DI+ + + D
Sbjct: 396 KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER--LYDPTEGDIIINDSHNLKDI 453
Query: 216 -----------------------------------DLTAVESVLKADV--------KRTE 232
DL A+ + D KR
Sbjct: 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNS 513
Query: 233 LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR---- 288
A+CA ++ +L E+ + + I ++++L F A+ D+
Sbjct: 514 CRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIH-DFVSALPDKYETL 572
Query: 289 ----ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
A+K SGG + R+S+ARA+ P +L+LDE T+ LD
Sbjct: 573 VGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 256 IYEELKAIGADSAEPRARRI---LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
I E L+ G + A R+ L +G R FSGG R R+ +ARAL + P
Sbjct: 424 IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK 483
Query: 313 LLLLDEPTNHLDLNAVIWLDNYLQGWKKTL----LIVSHDQSFLDNVCNEI 359
+++ DE + LD++ + N L ++ L +SHD + ++ + + +
Sbjct: 484 VIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV 534
|
Length = 623 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223
N NL I G +VG +G GKTTLLR I E
Sbjct: 401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG--------------------EEK 440
Query: 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKE--IYEELKAIGADSAEPRARRILAGLGF 281
+ D + E+ +A E + + E I E L++ D A IL G
Sbjct: 441 YRPDSGKVEVPKNTV---SALIPGEYEPEFGEVTILEHLRSKTGDLNA--AVEILNRAGL 495
Query: 282 SRAMQDRATKN-FSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-LNAVIW---LDNYLQ 336
S A+ R + S G + R LA+ L P +LL+DE HLD L AV + +
Sbjct: 496 SDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 337 GWKKTLLIVSHDQSFLD 353
TL++V+H +
Sbjct: 556 EAGITLIVVTHRPEVGN 572
|
Length = 593 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTL 313
E L+++G S + RA + A + K + SGG RV +A AL +EP
Sbjct: 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF 146
Query: 314 LLLDEPTNHLDL-NAVIWLDNYLQGWKK----TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
L+ DEPT LD+ N L L+ ++ +L+++HD + + +E+ +D ++
Sbjct: 147 LIADEPTTDLDVVNQARVLK-LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 58/212 (27%), Positives = 77/212 (36%), Gaps = 49/212 (23%)
Query: 159 NDLFVNANLL-----IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213
ND+ + L + G LVGPNG GK+TLL +A + +
Sbjct: 7 NDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----------MTSGSGSIQ 56
Query: 214 AD--DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE--IYEELKAIGADSAE 269
L A E A+ A + S+QQ ++ L D
Sbjct: 57 FAGQPLEAWS------------ATELARHRA--YLSQQQTPPFAMPVWHYLTLHQPDKTR 102
Query: 270 PRARRILAGLGFSRAMQD---RATKNFSGGWRMRVSLARA-LYIEPT------LLLLDEP 319
+AG A+ D R+T SGG RV LA L I P LLLLDEP
Sbjct: 103 TELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159
Query: 320 TNHLDLNAVIWLDNYLQ---GWKKTLLIVSHD 348
N LD+ LD L +++ SHD
Sbjct: 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHD 348
SGG + R+ +AR + ++P ++L+DEPT+ LD + + +++ + KK T++IV+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG R RV +A AL P LL+ DEPT LD
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ D E R L + +D+ + S G + RV++A L ++P +++LDEP +
Sbjct: 110 LDKDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 323 LD------LNAVIW-LDNYLQGWKKTLLIVSHD 348
LD L ++ L N QG KT+++ +HD
Sbjct: 169 LDPRGQETLMEILDRLHN--QG--KTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
R RR L + F+ A ++A + SGG + +V +A+ L P LL++DEPT +D++A
Sbjct: 385 RYRRAL-NIKFNHA--EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
|
Length = 510 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 177 LVGPNGHGKTTLLRHIAS-RDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
++GP+G GK+T LR I DL ID E E+ ++V ADV L
Sbjct: 70 MIGPSGCGKSTFLRCINRMNDL-----IDAARVEGELTFRG----KNVYDADVDPVALRR 120
Query: 236 ECAKL--EAADFSSEQQEQLKEIYE------ELKAIGADSAEPRARRILAGLGFSRAMQD 287
+ + F K IY+ +++ D E R L ++D
Sbjct: 121 RIGMVFQKPNPFP-------KSIYDNVAYGLKIQGYDGDIDE-RVEESLRRAALWDEVKD 172
Query: 288 RATK---NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TL 342
+ + SGG + R+ +ARA+ +P ++L+DEP + LD A +++ ++ + T+
Sbjct: 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTV 232
Query: 343 LIVSHD 348
+IV+H+
Sbjct: 233 VIVTHN 238
|
Length = 285 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 258 EELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTL 313
E A+G + + L +G A R K + SGG R+ +A AL E
Sbjct: 104 ETCLALGKPADDATLTAALEAVGLENA--ARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKKT----LLIVSHD 348
++ DEPT LD+ A + + L+ + +L+V+HD
Sbjct: 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
|
Length = 254 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD--DLTAVE 221
+A+L I G + ++G +G GK+T++R + N I +V+ D D+ +
Sbjct: 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL---------NRLIEPTRGQVLIDGVDIAKIS 96
Query: 222 SVLKADVKRTE---------LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA 272
+V+R + L+ L+ F E L I A+ +A
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME-----------LAGINAEERREKA 145
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD 332
L +G + SGG R RV LARAL I P +LL+DE + LD +
Sbjct: 146 LDALRQVGLENYAHSYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204
Query: 333 NYL----QGWKKTLLIVSHD 348
+ L ++T++ +SHD
Sbjct: 205 DELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 179 GPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238
G NG GKTTLLR +A +L+ E + D ++ + D R+ +A
Sbjct: 44 GDNGAGKTTLLRVLAG----------LLHVESGQIQID---GKTATRGD--RSRFMAYLG 88
Query: 239 KLEA--ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296
L AD S+ + L + A+ LA +G + +D + S G
Sbjct: 89 HLPGLKADLSTLENLHF------LCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAG 141
Query: 297 WRMRVSLARALYIEPT-LLLLDEPTNHLDLNAVIWLDNYL 335
+ R++LAR L++ P L LLDEP +LDL + ++ +
Sbjct: 142 QKKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA---VI 329
R +LA +G D N SGG + RV++A L +EP +++LDE T+ LD ++
Sbjct: 125 RDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 330 WLDNYLQGWKKTLLIVS--HDQSFLD--NVCNEIIHLDQQKLYYYKGNYSMFKK 379
L L+ K L ++S HD +D N+ ++++ LD KL +F K
Sbjct: 184 KLIRKLKK-KNNLTVISITHD---IDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
+ DR N SGG + R+ +AR L ++P ++L+DEP + LD A +++ ++ +
Sbjct: 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE 249
Query: 341 -TLLIVSHD 348
T+++V+H+
Sbjct: 250 YTVVVVTHN 258
|
Length = 305 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 56/184 (30%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+L + G + VG NG GK+ L R +A +L + +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALAR---------------------ALAGELPLLSGERQ 61
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD------------------- 266
+ L S EQ ++L +E + D
Sbjct: 62 SQFSHITRL-----------SFEQLQKLVS--DEWQRNNTDMLSPGEDDTGRTTAEIIQD 108
Query: 267 --SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
R ++ G + A+ DR K S G + L +AL EP LL+LDEP + LD
Sbjct: 109 EVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Query: 325 LNAV 328
+ +
Sbjct: 168 VASR 171
|
Length = 490 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
SGG + R+ +AR + I P +LLLDEP + LD
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 285 MQDRATKN---FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK- 340
++DR N SGG + R+ +AR + ++P ++L+DEP + LD + + ++ ++ K+
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 341 -TLLIVSHD 348
T++IV+H+
Sbjct: 198 YTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
GLVG NG GK+TL +++ L P +L+ + + D + LLA
Sbjct: 31 GLVGANGCGKSTLFMNLSG--LLRPQKGAVLWQGKPL--------------DYSKRGLLA 74
Query: 236 ECAKLEAADFSSEQQEQLKEIYEE----LKAIGADSAEPRARRILAGLGFSRAMQDR--A 289
++ EQQ +I + L+ +G AE RR+ L A R
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-TRRVDEALTLVDAQHFRHQP 133
Query: 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVS 346
+ S G + RV++A AL ++ LLLDEPT LD +I + + ++I S
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 347 HD 348
HD
Sbjct: 194 HD 195
|
Length = 271 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 21/197 (10%)
Query: 176 GLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235
+G NG GKTT L + +PP + + + +L AV L + L
Sbjct: 960 AFLGHNGAGKTTTLSILTGL---LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295
E F Y +LK + A+ +L G + A ++ SG
Sbjct: 1017 HLTVAEHILF-----------YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA-QDLSG 1064
Query: 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNA--VIW--LDNYLQGWKKTLLIVSHDQSF 351
G + ++S+A A + +++LDEPT+ +D + IW L Y G +T+++ +H
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG--RTIIMSTHHMDE 1122
Query: 352 LDNVCNEIIHLDQQKLY 368
D + + I + Q +LY
Sbjct: 1123 ADLLGDRIAIISQGRLY 1139
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA 327
++A SGG + +V++AR L P +L+LDEPT +D+ A
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
|
Length = 501 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSF 351
SGG R R+++ARAL + +L+LDE T+ LD + + L +K T L+++H S
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 352 LDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKM 380
++ +EI+ ++ +L G Y+ KM
Sbjct: 542 IEKA-DEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578
|
Length = 582 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| KOG0066|consensus | 807 | 100.0 | ||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0927|consensus | 614 | 100.0 | ||
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0062|consensus | 582 | 100.0 | ||
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| KOG0927|consensus | 614 | 100.0 | ||
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.98 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.98 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.98 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| KOG0055|consensus | 1228 | 99.97 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| KOG0062|consensus | 582 | 99.97 | ||
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| KOG0066|consensus | 807 | 99.97 | ||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| KOG0056|consensus | 790 | 99.96 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| KOG0059|consensus | 885 | 99.95 | ||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| KOG0054|consensus | 1381 | 99.94 | ||
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.94 | |
| KOG0061|consensus | 613 | 99.94 | ||
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| KOG0054|consensus | 1381 | 99.93 | ||
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.89 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.89 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.89 | |
| KOG2355|consensus | 291 | 99.89 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.88 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.85 | |
| KOG0060|consensus | 659 | 99.83 | ||
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.82 | |
| KOG0065|consensus | 1391 | 99.81 | ||
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.8 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.8 | |
| KOG0064|consensus | 728 | 99.8 | ||
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.79 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.79 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.78 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.77 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.74 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.73 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.72 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.69 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.67 | |
| KOG0063|consensus | 592 | 99.66 | ||
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.64 | |
| KOG0063|consensus | 592 | 99.62 | ||
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.59 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.58 | |
| KOG0065|consensus | 1391 | 99.57 | ||
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.55 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.52 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.49 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.48 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.48 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.46 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.4 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.35 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.35 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.33 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.33 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.33 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.31 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.29 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.28 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.27 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.27 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.25 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.25 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.22 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.2 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.17 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.17 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.11 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.06 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.05 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.01 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.0 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.99 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.95 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.85 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.83 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.8 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.78 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.77 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.75 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.72 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.68 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.67 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.66 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.66 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.61 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.56 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.56 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.54 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.5 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.5 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 98.42 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.41 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 98.41 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 98.39 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.38 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 98.37 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.33 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 98.33 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.31 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 98.3 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.3 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 98.29 | |
| PF12848 | 85 | ABC_tran_2: ABC transporter | 98.29 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.29 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.28 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 98.26 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 98.26 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.26 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.26 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 98.26 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 98.26 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 98.24 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 98.24 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 98.23 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 98.23 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 98.23 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 98.22 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.22 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 98.21 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 98.21 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 98.2 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 98.2 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 98.2 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 98.2 |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-76 Score=603.80 Aligned_cols=438 Identities=61% Similarity=0.940 Sum_probs=400.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCccccccccccCcccccCCcccEEEEeEEEEeCCceeeEeeeEEEEC
Q psy11936 92 HKEKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIAN 171 (548)
Q Consensus 92 ~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~nls~~y~~~~iL~~vsl~I~~ 171 (548)
-+++++.+.+++++++++.+ ..+.+...+|++++...+..+...++++++|.++|++++-.++.+|.|.||.|-.
T Consensus 215 gqek~kq~~Q~Eyerq~~g~-----~~~~~l~n~FtvSQ~~ks~~q~A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~ 289 (807)
T KOG0066|consen 215 GQEKKKQKDQEEYERQMEGI-----GSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289 (807)
T ss_pred chhhhhhhHHHHHHHHhhcc-----cchhhhcccccHHHhhhhhhHHHHHhhcccceeeeeeeecccceeeeccceEEEe
Confidence 34666677888899888754 4567788899999988777777788999999999999999999999999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc--CChhH
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD--FSSEQ 249 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 249 (548)
|.+||||||||-||||||+.|+...+.+|+++.+.++.|++...+.+.+..++..+..+..++.....+...+ ...+.
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta 369 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA 369 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH
Confidence 9999999999999999999999888889999999999999999888889999999988888887666554433 35567
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy11936 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVI 329 (548)
Q Consensus 250 ~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~ 329 (548)
.+.+..+++.+..++.+.++.+++.+|..|||+.++.++|...+|||||+||+|||||+..|.+|+|||||||||..++.
T Consensus 370 aErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 370 AERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11936 330 WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSK 409 (548)
Q Consensus 330 ~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (548)
||-+||+.|..|++|||||..|++.+|+.||+|++.++++|.|||+.|..+|.+......+.|++|+++++.+++.+.+.
T Consensus 450 WLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~ 529 (807)
T KOG0066|consen 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSA 529 (807)
T ss_pred ehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCcc
Q psy11936 410 KQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADE 489 (548)
Q Consensus 410 k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~ 489 (548)
+++.++.+..+.+++.+...+.+...+.....+++.+|.++.++|.||+|.++.+|||-+.||+|+|++.+|||++++|-
T Consensus 530 KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFG 609 (807)
T KOG0066|consen 530 KQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFG 609 (807)
T ss_pred HHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhccccc
Confidence 88888888888888888777766555556677888899999999999999999999999999999999889999999996
Q ss_pred C-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 490 D-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 490 ~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
. -.-++.|.||| |||+++++|.+.|+.|....+|.++|++|.||.
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh
Confidence 4 56789999997 899999999999999999999999999999985
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=576.02 Aligned_cols=382 Identities=35% Similarity=0.498 Sum_probs=304.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC------CCCCeEEEEeceeeccCc-h
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK------VPPNIDILYCEQEVVADD-L 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~------~~~~g~I~~~~q~i~~~~-~ 217 (548)
.+|.++||+++|+++++|+++||+|.+|++|||||+||||||||||+|+|...+ .+.+.+|.|..|+..... .
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 368999999999999999999999999999999999999999999999986422 222336778888776553 3
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
+....++........+..........+... ....+..+...+..++.|..+.++..+|..+||+.. ++++++|||||
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~ 158 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADP-DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGW 158 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHH
Confidence 444555444333333333333222212111 222233344445556678999999999999999864 89999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+||+||+||+.+||||||||||||||..++.||+++|.++.+||||||||++|++.+|++|+.+++|++..|.|||+.|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc--cceeeee
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR--EYVVKFS 455 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~--~~~~~~~ 455 (548)
.+++++...+..+.++++++++++++.++.+...++.++ +++++|.+........ . ...+|. ..+..|.
T Consensus 239 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~------k~a~sr~k~l~k~~~~--~-~~~~~~~~~~~~~~~ 309 (530)
T COG0488 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKA------KKAKSRIKRLEKLEAR--L-AEERPVEEGKPLAFR 309 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHHHhh--h-hhcccccccccceee
Confidence 999999999999999999999999999988776543322 2334443333221100 0 011121 3445678
Q ss_pred cCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeee
Q psy11936 456 FPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAY 529 (548)
Q Consensus 456 f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y 529 (548)
|+.+. +++++|+.++|++++|++++++|+++||.. .|.++.|.||| |||+|+|+|.+.|..|.|..++||.++|
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igy 389 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGY 389 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEE
Confidence 87776 489999999999999977679999999986 99999999997 8999999999999999999999999999
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
|+|+-..++
T Consensus 390 f~Q~~~~l~ 398 (530)
T COG0488 390 FDQHRDELD 398 (530)
T ss_pred EEehhhhcC
Confidence 999985544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=528.35 Aligned_cols=370 Identities=31% Similarity=0.458 Sum_probs=279.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--------ccCch
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--------VADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--------~~~~~ 217 (548)
+|+++||+++|+++.+|+||||+|.+|+++|||||||||||||||+|+|. ..|.+|.|.+.+... .....
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--ISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 48899999999999999999999999999999999999999999999984 357788887765421 00011
Q ss_pred hHHHHHHHhhHHHHHHHHHHHH-HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 218 TAVESVLKADVKRTELLAECAK-LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
+.+..+... ...+..... +...... .....+..+...+...+.+....++..+|..+||.....++++.+||||
T Consensus 79 ~~~~~v~~~----~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 79 PALEYVIDG----DREYRQLEAQLHDANER-NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CHHHHHHHh----hHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 111111110 001100000 0000000 0000111111122223445667789999999999744678999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||||+||+||+.+|+||||||||||||+.++.||.++|.++++|||+||||++|+..+||+|++|++|+++.|.|+|+.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
|...+..+...+.+.|+++++++++++.++.+++..+.+ .++++++.+.... +...+. ......+.|.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~------~~~a~~r~~~l~~---~~~~~~--~~~~~~~~~~~ 302 (638)
T PRK10636 234 FEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATK------AKQAQSRIKMLER---MELIAP--AHVDNPFHFSF 302 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------HHHHHHHHHHHHH---hhcccc--cccCCceeEec
Confidence 998888777778889999999999998887654332111 1222333332211 111110 00123567788
Q ss_pred CCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 457 PDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 457 ~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+.+.++++++|+++||+++|++ +++|+|+||+. .|..+.|.||| |||+|+|+|.++|++|.|+.+++++++|+.
T Consensus 303 ~~~~~~~~~~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 303 RAPESLPNPLLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred CCCccCCCceEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEec
Confidence 8777778899999999999965 67999999985 89999999997 899999999999999999998999999999
Q ss_pred ccc
Q psy11936 532 MKP 534 (548)
Q Consensus 532 ~~~ 534 (548)
|++
T Consensus 382 Q~~ 384 (638)
T PRK10636 382 QHQ 384 (638)
T ss_pred Ccc
Confidence 986
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=522.99 Aligned_cols=381 Identities=40% Similarity=0.643 Sum_probs=294.1
Q ss_pred CcccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCCeEEEEeceeeccCchhHHH
Q psy11936 143 NAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL-KVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 143 ~~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~-~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+.+|+++||+++|+++.+|+|+||+|.+|+++||||+|||||||||++|+|..+ ..|.+|+|.|++|++...+.+...
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 4567999999999998899999999999999999999999999999999998532 268899999999986544433333
Q ss_pred HHHHhhHHH-------HHHHHHHHHHhhhc-------------CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCC
Q psy11936 222 SVLKADVKR-------TELLAECAKLEAAD-------------FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281 (548)
Q Consensus 222 ~~~~~~~~~-------~~l~~~~~~~~~~~-------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl 281 (548)
.+....... .++..+...+.... ........+..+++.+...+.|..+.++..+|..+||
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 222221111 12222221111000 0111223455566667777788899999999999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
.....++++.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|+.++.|||+||||++++..+||+|++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 86677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q psy11936 362 LDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPT 441 (548)
Q Consensus 362 L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~ 441 (548)
|++|++..|.|+|+.|...+.++...+.+.|+.++++++++++++.+.+..+.+. .+.+++.+.... +...
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~------~~~~s~~k~l~~---~~~~ 484 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRA------SLVQSRIKALDR---LGHV 484 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------HHHhhcchHHHH---Hhhh
Confidence 9999999999999999998888888888999999999999988776544322111 111111111110 0000
Q ss_pred ccccCCccceeeeecCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCC
Q psy11936 442 ELIQKPREYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPL 515 (548)
Q Consensus 442 e~~~~~~~~~~~~~f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~ 515 (548)
+.. +.+....+.||.+. ..++++|++++|+++|++.+++|+|+||.. .|..+.|.||| |||+|+|+|.++|+
T Consensus 485 ~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~ 562 (718)
T PLN03073 485 DAV--VNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS 562 (718)
T ss_pred hcc--ccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 000 01123345665432 245689999999999965457999999985 89999999996 89999999999999
Q ss_pred CCCeeeccceeeeeeeccc
Q psy11936 516 QPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 516 ~~~~~~~~n~~~~y~~~~~ 534 (548)
+|.|+.+.+.+|+|+.|++
T Consensus 563 ~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 563 SGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred CceEEECCceeEEEEeccc
Confidence 9999998899999999987
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=493.55 Aligned_cols=382 Identities=36% Similarity=0.616 Sum_probs=311.9
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+..+.++|++++|.+..+++|++|++.+|+++||+|+|||||||+|++|+|...+.|.+..++...+++.......+..+
T Consensus 73 s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v 152 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAV 152 (614)
T ss_pred cccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999998899999999999988876666666555
Q ss_pred HHh-hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKA-DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+.. ...+..+......+.... .....+.+..++.++..++.+..+.++..+|..+||...+.++.+..|||||++|++
T Consensus 153 ~~~~~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 153 VMETDHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred hhhhHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 421 111111111111111110 112334455677778888888899999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-eEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK-TLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~-TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
|||+|+.+|+||||||||||||++++.||.++|..+.. ++|+|||+.+|++.+|++|++|+++++++|.|||+.|...+
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR 311 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc-cceeeeecCCCC
Q psy11936 382 AQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR-EYVVKFSFPDPP 460 (548)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~-~~~~~~~f~~~~ 460 (548)
.+....+.++|+++|+++.+++..+.+.-... +...+++++..+...... .....+++. +..+.|.||..+
T Consensus 312 ~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~-----a~~~rka~s~~K~~~km~---~~gL~ek~~~~k~l~~~f~~vg 383 (614)
T KOG0927|consen 312 SELEENQMKAYEKQQKQIAHMKDLIARFGHGS-----AKLGRKAQSKEKTLDKME---ADGLTEKVVGEKVLSFRFPEVG 383 (614)
T ss_pred HHHhHHHHHHHHHHHhHHHHhhHHHHhhcccc-----hhhhHHHhhhhhhHHHHh---hccccccccCCceEEEEccccc
Confidence 99999999999999999999998876543210 011123333333332211 122233333 467899999999
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
..++|++.+.||+|+|+++..+|++++|-. -+-++++.||| |||+|+|+|++.|+.|.+-.|+-+.++||.||-
T Consensus 384 ~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhh
Confidence 999999999999999987667999999963 66777788886 889999999999999999999888999999985
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=504.65 Aligned_cols=372 Identities=24% Similarity=0.369 Sum_probs=272.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec--------cCc-
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV--------ADD- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~--------~~~- 216 (548)
+|+++||+++|+++.+|+||||+|.+|+++||||||||||||||++|+|. ..|.+|.|.+.+.... ...
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--~~p~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--VLLDDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEeCCCCEEEEeccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999985 4677888877653110 000
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHH---HHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLK---EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
......+................+..........+++. .+...+...+.+....++..+|..+||. .++++.+|
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~L 157 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSSL 157 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhhc
Confidence 01111110000000000000000000000001111111 1111222234455677899999999996 27899999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||||+|||||+.+|+||||||||||||+.++.||.++|.++++|||+||||++|+..+||+|++|++|+++.|.|+
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 237 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN 237 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceee
Q psy11936 374 YSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVK 453 (548)
Q Consensus 374 y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~ 453 (548)
|+.|..+++.+.......++.+++++++++.++.+ ...+.+. ++ +++.+....... ...+. .+....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~------~~-~~r~~~~~~~~~-~~~~~--~~~~~~~~ 306 (635)
T PRK11147 238 YDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRT------RN-EGRVRALKALRR-ERSER--REVMGTAK 306 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhh------hH-HHHHHHHHHhhh-hhccc--cccCCcee
Confidence 99999988887777778888888888888777654 1111111 01 222221111000 00110 00123456
Q ss_pred eecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeee
Q psy11936 454 FSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFA 528 (548)
Q Consensus 454 ~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~ 528 (548)
|.|+.+.+.++++|+++||+++|++ +++|+|+||+. .|..+.|.||| |||+|+|+|.++|++|.|+.++++.|+
T Consensus 307 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~ 385 (635)
T PRK11147 307 MQVEEASRSGKIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA 385 (635)
T ss_pred EEeCCCCCCCCceEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE
Confidence 7787776778899999999999965 67999999985 89999999997 899999999999999999989999999
Q ss_pred eeeccc
Q psy11936 529 YEGMKP 534 (548)
Q Consensus 529 y~~~~~ 534 (548)
|+.|++
T Consensus 386 y~~q~~ 391 (635)
T PRK11147 386 YFDQHR 391 (635)
T ss_pred EEeCcc
Confidence 999986
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=483.13 Aligned_cols=351 Identities=40% Similarity=0.598 Sum_probs=281.3
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+.+|.+.+++.+||++.+|++.++++..|.+|||||+||+|||||||+|+. +..+++...|++..........+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 457999999999999999999999999999999999999999999999985 23334445556655554444444
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..+..+..++.+...+.. .-...+....+|..+||++++..+++.+||||||+|++|
T Consensus 152 l~~D~~~~dfl~~e~~l~~----------------------~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaL 209 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLA----------------------GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLAL 209 (582)
T ss_pred hhccHHHHHHHHhhhhhhc----------------------cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHH
Confidence 4444333333322211100 001122233489999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~ 383 (548)
||||+.+||||||||||||||..++.||+++|..|+.|+|+||||+.|++.+|+.||++++-++-+|.|||+.|.+.+.+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCc-cceeeeecCC-CCC
Q psy11936 384 KSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPR-EYVVKFSFPD-PPP 461 (548)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~-~~~~~~~f~~-~~~ 461 (548)
+...++++|+.+.+..++++.++.+++..++++ ...++|.++.. +......+. +..+.|.||. ...
T Consensus 290 ~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra------~svqSRIk~L~------kl~~lk~~~~~~~~~~~fP~~~e~ 357 (582)
T KOG0062|consen 290 AKKNQQREFEVQMKYRAHLQVFIDKFRYNAARA------SSVQSRIKMLG------KLPALKSTLIEVLIGFLFPTEGEV 357 (582)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhccCcccc------hhHHHHHHHhc------cCCCCCccceecccceecCCCCCc
Confidence 999999999999999999999988776432221 12234444332 222222221 3467899998 456
Q ss_pred CCCCcEEEEeeEEEeCCCC-cccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccc
Q psy11936 462 LQPPILGLHNVTFAYEGMK-PLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKP 534 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~~-~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~ 534 (548)
.+.|++++.+|+|.|+.+. +++.++++.. ..-++-+.|+| ||++|+++|++.|+.|.+-.|-++||+||+||-
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhh
Confidence 7899999999999998666 6899988864 55667777775 788899999999999999999999999999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=458.09 Aligned_cols=377 Identities=24% Similarity=0.397 Sum_probs=259.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec--------eeecc-Cc
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE--------QEVVA-DD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~--------q~i~~-~~ 216 (548)
+|+++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+ |+... ..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--LEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 38899999999988999999999999999999999999999999999985 356677766643 22111 11
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAAD-FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
.+..+.+..................... ........+......+.....+....++.++|+.+|+.....++++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 1221111100000000000000000000 000000111111222233334445567889999999975444678999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||||+|||||+.+|+||||||||||||+.++.||.++|.+.+.|||+||||++++..+||+|++|++|+++.|.|+|+
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999987899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeee
Q psy11936 376 MFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFS 455 (548)
Q Consensus 376 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~ 455 (548)
.|..++........++++.+++++++++.+..+........ ..++.+.+..... ........ ......+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~ 308 (530)
T PRK15064 239 EYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKA------KQATSRAKQIDKI-KLEEVKPS---SRQNPFIR 308 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh------HHHHHHHHHHhhc-cccccCCc---cccCceee
Confidence 99887766555566667777777776665433211100000 0011111111100 00000000 00111234
Q ss_pred cCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeee
Q psy11936 456 FPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYE 530 (548)
Q Consensus 456 f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~ 530 (548)
|+.....++++|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.+.+.+++|+
T Consensus 309 ~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~ 387 (530)
T PRK15064 309 FEQDKKLHRNALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYY 387 (530)
T ss_pred CCCCCCCCCceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEE
Confidence 44444446789999999999965 67999999985 89999999996 89999999999999999988878899999
Q ss_pred eccce
Q psy11936 531 GMKPL 535 (548)
Q Consensus 531 ~~~~~ 535 (548)
.|+|.
T Consensus 388 ~q~~~ 392 (530)
T PRK15064 388 AQDHA 392 (530)
T ss_pred ccccc
Confidence 99973
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=457.61 Aligned_cols=370 Identities=25% Similarity=0.323 Sum_probs=260.0
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE--------EeceeeccC-
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL--------YCEQEVVAD- 215 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~--------~~~q~i~~~- 215 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|.. .|.+|.|. |..|+....
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~--~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD--KEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCCCEEEEEecCCCCCC
Confidence 699999999998 788999999999999999999999999999999999853 45566654 444443221
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHh-h-hcCCh---hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLE-A-ADFSS---EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
..+..+.+.................. . ..... ........+.+.+...+.+....++..+|..+|+. . .++++
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~~~ 161 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDAKV 161 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccCch
Confidence 12222221100000000000000000 0 00000 00011122233344445555677899999999996 3 58899
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|+++.|
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~ 241 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 241 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCcccccCCcc
Q psy11936 371 KGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSK-LQKADEDQGPTELIQKPRE 449 (548)
Q Consensus 371 ~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k-~~~~~~~~~~~e~~~~~~~ 449 (548)
.|+|+.|...+..........+++++++++++..+....... .. ...+.+.+ ..+.... .. ... .
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~-~~---~~~--~ 307 (556)
T PRK11819 242 EGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQ-------AKSKARLARYEELLSE-EY---QKR--N 307 (556)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hH-------HHHHHHHHHHHHhhcc-cc---ccc--C
Confidence 999999988776555555556666666666555543321100 00 00011111 0010000 00 000 1
Q ss_pred ceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 450 YVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 450 ~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+.|+.....++++|++++|+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+++
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~ 386 (556)
T PRK11819 308 ETNEIFIPPGPRLGDKVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET 386 (556)
T ss_pred CCceeecCCCCCCCCeEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence 12234455444445789999999999965 67999999985 89999999996 89999999999999999998889
Q ss_pred eeeeeeeccc
Q psy11936 525 VTFAYEGMKP 534 (548)
Q Consensus 525 ~~~~y~~~~~ 534 (548)
++|+|+.|.+
T Consensus 387 ~~i~~v~q~~ 396 (556)
T PRK11819 387 VKLAYVDQSR 396 (556)
T ss_pred eEEEEEeCch
Confidence 9999999996
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=455.22 Aligned_cols=370 Identities=25% Similarity=0.309 Sum_probs=258.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE--------eceeeccC-
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY--------CEQEVVAD- 215 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~--------~~q~i~~~- 215 (548)
+|+++||+++|+ ++++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+ ..|.....
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--DKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEecCCCEEEEEeccCCCCC
Confidence 589999999998 78899999999999999999999999999999999985 3456666544 44433221
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHH-hhhc-CChhH---HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKL-EAAD-FSSEQ---QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
..+..+.+................. .... ..... ......+.+.+...+.+....++.+++..+|+.. .++++
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~ 159 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADV 159 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCch
Confidence 1222222111000000000000000 0000 00000 0011223333444555556678889999999963 57899
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|.++++|||+||||++++..+||+|++|++|+++.|
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~ 239 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPW 239 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCcccccCCcc
Q psy11936 371 KGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSK-LQKADEDQGPTELIQKPRE 449 (548)
Q Consensus 371 ~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k-~~~~~~~~~~~e~~~~~~~ 449 (548)
.|+|+.|.+............++++++++.++..++.+.... ... ..+.+.+ ..+..+ ... ..+ +
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~--~~~---~~~-~ 305 (552)
T TIGR03719 240 EGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQA-------KSKARLARYEELLS--QEF---QKR-N 305 (552)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHH-------HHHHHHHHHHhhhh--hcc---ccc-C
Confidence 999999988766555555556666666665554443221110 000 0000000 000000 000 000 0
Q ss_pred ceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 450 YVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 450 ~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+.|+.+...++++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+++
T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~ 384 (552)
T TIGR03719 306 ETAEIYIPPGPRLGDKVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET 384 (552)
T ss_pred CCceeecCCCCCCCCeEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc
Confidence 12234445443446789999999999965 67999999985 99999999996 89999999999999999988888
Q ss_pred eeeeeeeccc
Q psy11936 525 VTFAYEGMKP 534 (548)
Q Consensus 525 ~~~~y~~~~~ 534 (548)
++|+|+.|++
T Consensus 385 ~~i~~v~q~~ 394 (552)
T TIGR03719 385 VKLAYVDQSR 394 (552)
T ss_pred eEEEEEeCCc
Confidence 9999999996
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=382.94 Aligned_cols=221 Identities=24% Similarity=0.362 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~ 224 (548)
+|+++||+++||+..+|++|||+|.+||+++||||||||||||||||.++ ..+++|.|.+.++.+.... ...++.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--E~~~~G~I~i~g~~~~~~~~~~~~R~-- 77 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--EEPDSGSITVDGEDVGDKKDILKLRR-- 77 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--cCCCCceEEECCEeccchhhHHHHHH--
Confidence 58999999999999999999999999999999999999999999999974 5789999999997764322 222222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++++|. .+.++..++.+|+....-........++++++.++|+++||.+ ..+.+|.+||||||||||||
T Consensus 78 -----~vGmVFQ~---fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 78 -----KVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred -----hcCeeccc---ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHHHHHH
Confidence 22233222 2344566777776543333444555667888999999999985 57999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||+++|+++|+|||||+|||+.+..+.+.++++ +.|+|+|||++.|+..+||||++|++|+++..+.+-+.|.+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999998888877665 68999999999999999999999999999987655455543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=417.96 Aligned_cols=321 Identities=20% Similarity=0.222 Sum_probs=226.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece----------------
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ---------------- 210 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q---------------- 210 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.+.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 4689999999988999999999999999999999999999999999985212577899887521
Q ss_pred eec--cCch----hHHH----HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC
Q psy11936 211 EVV--ADDL----TAVE----SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG 280 (548)
Q Consensus 211 ~i~--~~~~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg 280 (548)
.+. ..+. .... ...........++++. ........++.+++..... ...........++.++|+.+|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~--~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR--TFALYGDDTVLDNVLEALE-EIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEecc--ccccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcC
Confidence 000 0000 0000 0000000001111110 0011122345555432111 111111223457889999999
Q ss_pred CChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhc
Q psy11936 281 FSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 281 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~va 356 (548)
+.. ..++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+|
T Consensus 158 l~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 158 LSH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred Chh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 974 568899999999999999999999999999999999999999999998887654 579999999999999999
Q ss_pred CEEEEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11936 357 NEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADE 436 (548)
Q Consensus 357 drIi~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~ 436 (548)
|+|++|++|+++. .|+++.+..... ... . ..
T Consensus 237 d~i~~l~~G~i~~-~g~~~~~~~~~~---------------------~~~-------~---------------~~----- 267 (520)
T TIGR03269 237 DKAIWLENGEIKE-EGTPDEVVAVFM---------------------EGV-------S---------------EV----- 267 (520)
T ss_pred CEEEEEeCCEEee-ecCHHHHHHHHH---------------------hhc-------h---------------hh-----
Confidence 9999999999985 588876532100 000 0 00
Q ss_pred cCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCC----CCcccccCCccC-CCceeEeecCc----cceeec
Q psy11936 437 DQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEG----MKPLLMSKADED-QGPTELIQKPR----EYVVKF 507 (548)
Q Consensus 437 ~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~----~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~ 507 (548)
.. + .+.+.+.++|+++||+++|++ .+++|+|+||+. .|+.+.|.||| |||+|+
T Consensus 268 --~~------~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~ 329 (520)
T TIGR03269 268 --EK------E----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKI 329 (520)
T ss_pred --cc------c----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00 0 000123568999999999952 257999999985 99999999996 899999
Q ss_pred cCCCCCCCCCCeeec--c---c-------------eeeeeeeccceeee
Q psy11936 508 SFPDPPPLQPPILGL--H---N-------------VTFAYEGMKPLLVD 538 (548)
Q Consensus 508 ~~~~~~~~~~~~~~~--~---n-------------~~~~y~~~~~~~~~ 538 (548)
|+|.++|++|+|+.. . + -+|+|+.|+|.+.+
T Consensus 330 l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 330 IAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred HhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 999999999998752 1 1 13899999986543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=407.80 Aligned_cols=318 Identities=19% Similarity=0.220 Sum_probs=223.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+.++.+...........
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--~~p~~G~i~~~~~~~~~~~~~~~~~~-- 78 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--LPLLSGERQSQFSHITRLSFEQLQKL-- 78 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCceEEECCcccccCCHHHHHHH--
Confidence 58999999999988899999999999999999999999999999999985 46788999887765432111111111
Q ss_pred hhHHHHHHHHHHHHHhhh-----cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAA-----DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..+..+....... .+..++.+++ . . ......++.++++.+|+.. ..++++.+||||||||
T Consensus 79 -----i~~~~q~~~~~~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qr 143 (490)
T PRK10938 79 -----VSDEWQRNNTDMLSPGEDDTGRTTAEII-------Q-D-EVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRK 143 (490)
T ss_pred -----hceeccCcchhhcccchhhccccHHHhc-------c-c-chhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHH
Confidence 1111111000000 0011111111 0 0 1123467889999999974 5799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 222 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET-GEREEI 222 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999876 57999999999999999999999999999865 665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~ 457 (548)
.... .+..+.. ...... .... ...+. .+ +
T Consensus 223 ~~~~----------------~~~~~~~-----------------------~~~~~~-------~~~~-~~~~~--~~--~ 251 (490)
T PRK10938 223 LQQA----------------LVAQLAH-----------------------SEQLEG-------VQLP-EPDEP--SA--R 251 (490)
T ss_pred hcch----------------hhhhhhh-----------------------hhccCc-------cccC-ccccc--cc--c
Confidence 2100 0000000 000000 0000 00000 00 0
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCC-CCCCeeec-c-------
Q psy11936 458 DPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPP-LQPPILGL-H------- 523 (548)
Q Consensus 458 ~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~-~~~~~~~~-~------- 523 (548)
.....+.++|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|+|..+| ++|.|+.. +
T Consensus 252 ~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 252 HALPANEPRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred cccCCCCceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011124678999999999965 57999999985 99999999996 8999999998876 67876532 1
Q ss_pred ----ceeeeeeeccce
Q psy11936 524 ----NVTFAYEGMKPL 535 (548)
Q Consensus 524 ----n~~~~y~~~~~~ 535 (548)
+-.|+|+.|.|.
T Consensus 331 ~~~~~~~i~~v~q~~~ 346 (490)
T PRK10938 331 IWDIKKHIGYVSSSLH 346 (490)
T ss_pred HHHHHhhceEECHHHH
Confidence 124899999863
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=410.48 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=224.3
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~ 218 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|...+. |.+|+|.+.++++......
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999963 57999999999999999999999999999999999863211 2689999988876432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGG 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGG 296 (548)
....... ...+++++.... ......++.+++.................++.++|+.+|+.. ...++++.+||||
T Consensus 85 ~~~~~~~---~~ig~v~Q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 85 TLRGVRG---NKIAMIFQEPMV-SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHhc---CceEEEecCchh-hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1100000 011112211100 001112222222211100001112233567889999999974 2468899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~-g 239 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ-N 239 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe-C
Confidence 999999999999999999999999999999999999999763 67999999999999999999999999999876 4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCcccee
Q psy11936 373 NYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVV 452 (548)
Q Consensus 373 ~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~ 452 (548)
+..++..... ..+ . .. .... .. .. .+
T Consensus 240 ~~~~~~~~~~-------~~~------~---~~--------------------------~~~~--~~-~~----~~----- 265 (529)
T PRK15134 240 RAATLFSAPT-------HPY------T---QK--------------------------LLNS--EP-SG----DP----- 265 (529)
T ss_pred CHHHHhhCCC-------CHH------H---HH--------------------------HHHh--Cc-cc----cc-----
Confidence 4333211000 000 0 00 0000 00 00 00
Q ss_pred eeecCCCCCCCCCcEEEEeeEEEeCC----------CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCC
Q psy11936 453 KFSFPDPPPLQPPILGLHNVTFAYEG----------MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQP 517 (548)
Q Consensus 453 ~~~f~~~~~~~~~vL~l~~vs~~Y~~----------~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~ 517 (548)
.+. ...++++|+++||+++|+. ++.+|+|+||+. .|+.+.|.||| |||+|+|+|.++ ++|
T Consensus 266 ---~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G 340 (529)
T PRK15134 266 ---VPL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG 340 (529)
T ss_pred ---ccc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc
Confidence 000 1124578999999999952 357999999986 99999999996 899999999985 788
Q ss_pred Ceee-ccce-------------eeeeeeccc
Q psy11936 518 PILG-LHNV-------------TFAYEGMKP 534 (548)
Q Consensus 518 ~~~~-~~n~-------------~~~y~~~~~ 534 (548)
.|+. ++++ .++|+.|+|
T Consensus 341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred EEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 8764 3332 489999997
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=409.62 Aligned_cols=316 Identities=19% Similarity=0.164 Sum_probs=225.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|...+.|.+|.|.+.+.++......... .
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~---~ 81 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE---R 81 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH---H
Confidence 5999999999998899999999999999999999999999999999998531114689999988776432211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++++.. ......++.+++..... ....+ ......++.++|+.+|+.. ..++++.+|||||||||+
T Consensus 82 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 82 ---AGIAIIHQEL---ALVKELSVLENIFLGNE-ITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVE 153 (506)
T ss_pred ---CCeEEEEecc---ccCCCCcHHHHhhhccc-ccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHH
Confidence 0111111111 11123344444321110 00001 1122356788999999974 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+..
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~ 232 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAGMTE 232 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee-cccccCCH
Confidence 999999999999999999999999999999998765 57999999999999999999999999999865 44332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC-
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD- 458 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~- 458 (548)
. ... +... . ..... .+|.
T Consensus 233 ~----------------~~~---~~~~--------------------------~--~~~~~--------------~~~~~ 251 (506)
T PRK13549 233 D----------------DII---TMMV--------------------------G--RELTA--------------LYPRE 251 (506)
T ss_pred H----------------HHH---HHhh--------------------------C--cCccc--------------ccccc
Confidence 0 000 0000 0 00000 0000
Q ss_pred CCCCCCCcEEEEeeEEEeC--CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCC-CCCCCeeec-cc-----
Q psy11936 459 PPPLQPPILGLHNVTFAYE--GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPP-PLQPPILGL-HN----- 524 (548)
Q Consensus 459 ~~~~~~~vL~l~~vs~~Y~--~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~-~~~~~~~~~-~n----- 524 (548)
+...+.++|+++||+++|+ +++++|+|+||+. .|+.+.|.||| |||+|+|.|.++ |++|.|+.. .+
T Consensus 252 ~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 252 PHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred ccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC
Confidence 0112456899999999995 2357999999985 99999999996 899999999988 599988743 22
Q ss_pred ------eeeeeeeccc
Q psy11936 525 ------VTFAYEGMKP 534 (548)
Q Consensus 525 ------~~~~y~~~~~ 534 (548)
..++|+.|+|
T Consensus 332 ~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 332 PQQAIAQGIAMVPEDR 347 (506)
T ss_pred HHHHHHCCCEEeCcch
Confidence 2389999996
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=413.67 Aligned_cols=354 Identities=16% Similarity=0.145 Sum_probs=231.6
Q ss_pred ccEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 145 VDIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 145 ~~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.+|+++||+++|++ .++|+||||+|.+|+++||||+|||||||||++|+|. ..|.+|.|.+.+..+...+
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--l~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--LEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCeEEEECCEEecccccccc
Confidence 36999999999963 4799999999999999999999999999999999985 3577899988776442110
Q ss_pred -hhHHH-HHHHhhH-HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccC
Q psy11936 217 -LTAVE-SVLKADV-KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATK 291 (548)
Q Consensus 217 -~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~ 291 (548)
..... ....... ...+++.+... .......++.+++.................++.++|+.+||.. ..+++++.
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPM-TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCch-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 00000 0000000 01112222110 0112234566655432211011122234467889999999963 35789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 99999999999999999999999999999999999988888887654 57999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCC
Q psy11936 368 YYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKP 447 (548)
Q Consensus 368 ~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~ 447 (548)
+. .|+++.+..... ..|. ..+......... . ..+ .... ....... ..+
T Consensus 248 ~~-~g~~~~~~~~~~-------~~~~------~~l~~~~~~~~~--~-----------~~~-~~~~---~~~~~~~-~~~ 295 (623)
T PRK10261 248 VE-TGSVEQIFHAPQ-------HPYT------RALLAAVPQLGA--M-----------KGL-DYPR---RFPLISL-EHP 295 (623)
T ss_pred cc-cCCHHHhhcCCC-------Chhh------hhhhhccCcccc--c-----------ccc-cCCc---ccccccc-ccc
Confidence 86 577766532100 0000 000000000000 0 000 0000 0000000 000
Q ss_pred ccceeeeecCCCCCCCCCcEEEEeeEEEeCC----------CCcccccCCccC-CCceeEeecCc----cceeeccCCCC
Q psy11936 448 REYVVKFSFPDPPPLQPPILGLHNVTFAYEG----------MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDP 512 (548)
Q Consensus 448 ~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~----------~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~ 512 (548)
.. .....++.....+.++|+++||+++|+. ...+|+||||+. .|+.+.|.||| |||+|+|+|.+
T Consensus 296 ~~-~~~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 296 AK-QEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred cc-cCcccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 00 0000111111235679999999999962 146999999985 99999999996 89999999999
Q ss_pred CCCCCCeee-ccce-------------eeeeeeccc
Q psy11936 513 PPLQPPILG-LHNV-------------TFAYEGMKP 534 (548)
Q Consensus 513 ~~~~~~~~~-~~n~-------------~~~y~~~~~ 534 (548)
+|++|.|+. +.++ .|+|+.|+|
T Consensus 375 ~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 375 ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred CCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 999998764 3322 489999998
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=358.95 Aligned_cols=218 Identities=26% Similarity=0.340 Sum_probs=184.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|||+.|+++.+++|+||+|+.|++++|||||||||||+||+|.++ ..|++|.|.+++.++...+...++..++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--iept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--cCCCCceEEECCeecccCCHHHHHHhhh
Confidence 58899999999999999999999999999999999999999999999974 5799999999999987766655555555
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkqRvaLA 304 (548)
+..+..++ ++.+++.+|+..+- .+...+......++.++|..+||+. .+.+|+|++|||||+|||.+|
T Consensus 79 YviQqigL----------FPh~Tv~eNIa~VP-~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGL----------FPHLTVAENIATVP-KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhccc----------CCCccHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 54443333 44667777765432 2333334456788999999999985 589999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+.+|+|||+|||+++|||.++..|.+.+.+ +++|||+||||++++.+++|||++|+.|+++.|..+-+.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 999999999999999999999998888777654 578999999999999999999999999999999665443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=403.53 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=223.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+.|.+|.|.+.++.+........ .
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~---~- 76 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT---E- 76 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH---H-
Confidence 378999999999888999999999999999999999999999999999853111368999998887643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh----cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA----IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.....++++.. ......++.+++.... .+.. ........++.++|+.+|+.....++++.+|||||||||
T Consensus 77 --~~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 77 --RAGIVIIHQEL---TLVPELSVAENIFLGN-EITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred --hCCEEEEeecc---ccCCCCcHHHHHHhhc-cccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 00111222211 1112234444432110 0000 001122456788999999974333678999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++.. ..+.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~ 229 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM-STMS 229 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCc-ccCC
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999865322 2110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.. ..+ .. ... .. .. . .++.
T Consensus 230 ~~----------------~~~---~~--------------------------~~~--~~---~~---~--------~~~~ 248 (500)
T TIGR02633 230 ED----------------DII---TM--------------------------MVG--RE---IT---S--------LYPH 248 (500)
T ss_pred HH----------------HHH---HH--------------------------HhC--cc---cc---c--------cccc
Confidence 00 000 00 000 00 00 0 0000
Q ss_pred -CCCCCCCcEEEEeeEEEeC--CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCC-CCCCeeec-cce---
Q psy11936 459 -PPPLQPPILGLHNVTFAYE--GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPP-LQPPILGL-HNV--- 525 (548)
Q Consensus 459 -~~~~~~~vL~l~~vs~~Y~--~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~-~~~~~~~~-~n~--- 525 (548)
+.+.++++|+++|++++|+ +++.+|+|+||+. .|+.+.|.||| |||+|+|+|.++| ++|+|+.. .++
T Consensus 249 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 249 EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC
Confidence 1112456899999999994 2357999999985 99999999996 8999999999885 88988753 222
Q ss_pred --------eeeeeeccc
Q psy11936 526 --------TFAYEGMKP 534 (548)
Q Consensus 526 --------~~~y~~~~~ 534 (548)
.++|+.|.+
T Consensus 329 ~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDR 345 (500)
T ss_pred CHHHHHhCCCEEcCcch
Confidence 389999996
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=405.01 Aligned_cols=316 Identities=16% Similarity=0.128 Sum_probs=226.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.........
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~~---- 78 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA---- 78 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--cCCCccEEEECCEECCCCCHHHHH----
Confidence 58999999999988999999999999999999999999999999999985 367889999988776432211100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCC-----CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGA-----DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~-----~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
.....++++.. ......++.+++........ ..+. .....++.++|+.+|+.. ..++++.+|||||||
T Consensus 79 --~~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~q 152 (510)
T PRK09700 79 --QLGIGIIYQEL---SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQ 152 (510)
T ss_pred --HCCeEEEeecc---cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHH
Confidence 00111121111 11122344444321000000 0010 112456788999999974 578999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 231 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC-SGMVSD 231 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee-ecchhh
Confidence 999999999999999999999999999999999998765 5799999999999999999999999999974 577665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
+.... .. +..... .... .. .. ..
T Consensus 232 ~~~~~----------------~~---~~~~~~---------------------~~~~---~~--~~------------~~ 254 (510)
T PRK09700 232 VSNDD----------------IV---RLMVGR---------------------ELQN---RF--NA------------MK 254 (510)
T ss_pred CCHHH----------------HH---HHhcCC---------------------Cccc---cc--cc------------cc
Confidence 42100 00 000000 0000 00 00 00
Q ss_pred CC-CCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce----
Q psy11936 457 PD-PPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV---- 525 (548)
Q Consensus 457 ~~-~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~---- 525 (548)
+. ....++++|+++||++.|. .+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+.+. ++
T Consensus 255 ~~~~~~~~~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 255 ENVSNLAHETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331 (510)
T ss_pred cccccCCCCcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence 00 0112456899999999873 3899999985 89999999996 8999999999999999987532 32
Q ss_pred -------eeeeeeccc
Q psy11936 526 -------TFAYEGMKP 534 (548)
Q Consensus 526 -------~~~y~~~~~ 534 (548)
.++|+.|.|
T Consensus 332 ~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 332 PLDAVKKGMAYITESR 347 (510)
T ss_pred HHHHHHCCcEEccCcc
Confidence 489999974
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=401.79 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=226.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+..+..........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~--- 85 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGGNPCARLTPAKAHQ--- 85 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHHHHh---
Confidence 59999999999988999999999999999999999999999999999985 4678899999887664322111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+.. ......++.+++.... ........++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 86 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~-----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 86 ---LGIYLVPQEP---LLFPNLSVKENILFGL-----PKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred ---CCEEEEeccC---ccCCCCcHHHHhhccc-----ccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHH
Confidence 0011112111 1122334444432110 011123467888999999974 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+++.+.....
T Consensus 154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~~~ 232 (510)
T PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLSTDDI 232 (510)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcCHHHH
Confidence 999999999999999999999999999998765 5799999999999999999999999999985 688877642100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC---C
Q psy11936 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD---P 459 (548)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~---~ 459 (548)
. ..+. .. .. . ... ... ....+.+|. +
T Consensus 233 ------~----------~~~~--~~-~~----------------~-~~~-------~~~--------~~~~~~~~~~~~~ 261 (510)
T PRK15439 233 ------I----------QAIT--PA-AR----------------E-KSL-------SAS--------QKLWLELPGNRRQ 261 (510)
T ss_pred ------H----------HHHh--Cc-cc----------------c-ccc-------ccc--------ccccccccccccc
Confidence 0 0000 00 00 0 000 000 000111221 1
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------- 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------- 525 (548)
.+.++++|+++|+++ .+|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 262 ~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 262 QAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred cCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 123567899999994 1699999985 89999999996 89999999999999998865 3333
Q ss_pred ---eeeeeeccc
Q psy11936 526 ---TFAYEGMKP 534 (548)
Q Consensus 526 ---~~~y~~~~~ 534 (548)
.|+|+.|.|
T Consensus 336 ~~~~i~~v~q~~ 347 (510)
T PRK15439 336 LARGLVYLPEDR 347 (510)
T ss_pred HhCCcEECCCCh
Confidence 489999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=393.05 Aligned_cols=322 Identities=18% Similarity=0.250 Sum_probs=226.5
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~ 218 (548)
.|+++||++.|... .+++||||+|.+||++||||.|||||||+.++|.|.. +.+ .+|+|.|.++++......
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll-~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLL-PEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccC-CCCCcccceEEEECCcchhcCCHH
Confidence 69999999999543 5899999999999999999999999999999999963 333 379999999877554433
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh-hcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ-DRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~~~~~~LSGGq 297 (548)
..+.+.+. ...+++|.. +....+..+...++.+++.........++..++.++|+.+||++... +++|++|||||
T Consensus 84 ~~r~~rg~---~Ia~i~Q~p-~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 84 EMRKLRGK---RIAMIFQDP-MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHHhccc---cEEEEecCc-hhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 22221111 112222211 01111223344444433322211223456778899999999986544 46999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||.||+||+++|+|||+||||++||+.++..+.++|+++ +.++|+||||+..+..+||||++|.+|++++.+..
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999988764 68999999999999999999999999999997544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceee
Q psy11936 374 YSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVK 453 (548)
Q Consensus 374 y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~ 453 (548)
-+.|.+..... ...+.......... ....
T Consensus 240 ~~i~~~p~hpY-------------------------------------------T~~Ll~a~p~~~~~--------~~~~ 268 (539)
T COG1123 240 EEILSNPQHPY-------------------------------------------TRGLLAAVPRLGDE--------KIIR 268 (539)
T ss_pred HHHHhccCCcc-------------------------------------------cHHHHhhCCCcccc--------cccc
Confidence 44332211000 00000000000000 0000
Q ss_pred eecCCCCCCCCCcEEEEeeEEEeCC------C----CcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCC
Q psy11936 454 FSFPDPPPLQPPILGLHNVTFAYEG------M----KPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPP 518 (548)
Q Consensus 454 ~~f~~~~~~~~~vL~l~~vs~~Y~~------~----~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~ 518 (548)
.....+. .+.++|+++||++.|.. . ..+++||||.. .|+|..|.|. +|||.|+|+|..+|++|+
T Consensus 269 ~~~~~~~-~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~ 347 (539)
T COG1123 269 LPRRGPL-RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGS 347 (539)
T ss_pred ccccccc-ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 0000111 16799999999999973 1 24799999985 9999999997 699999999999999997
Q ss_pred eee-ccc
Q psy11936 519 ILG-LHN 524 (548)
Q Consensus 519 ~~~-~~n 524 (548)
|+. +++
T Consensus 348 i~~~g~~ 354 (539)
T COG1123 348 IIFDGQD 354 (539)
T ss_pred EEEeCcc
Confidence 543 555
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=365.24 Aligned_cols=225 Identities=25% Similarity=0.341 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+|++++||+.|.. ..+|+||||+|++|+++||||.||||||||+|||.+ +..|++|+|.++++++...+...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~--Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL--LERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc--cCCCCCceEEEcCEecccCChHHH
Confidence 5899999999975 368999999999999999999999999999999997 468999999999988865443332
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
+. ..+..+++++.. +.+...++.+++....+ +......+.+.|+.++|+.+||+ +..+++|.+||||||||
T Consensus 79 r~----~R~~IGMIFQhF---nLLssrTV~~NvA~PLe-iag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 79 RQ----LRQKIGMIFQHF---NLLSSRTVFENVAFPLE-LAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQR 149 (339)
T ss_pred HH----HHhhccEEeccc---cccccchHHhhhhhhHh-hcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhH
Confidence 21 222333333321 22334566666654332 33344456778999999999998 56899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+|||+|||||+|||.+...+.++|++ ++.||++|||.|+.+.++|||+.+|++|++++.+.-.+.
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999888888865 467999999999999999999999999999998777777
Q ss_pred HHHHH
Q psy11936 377 FKKMY 381 (548)
Q Consensus 377 f~~~~ 381 (548)
|...+
T Consensus 230 F~~Pk 234 (339)
T COG1135 230 FANPK 234 (339)
T ss_pred hcCcc
Confidence 76543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=399.45 Aligned_cols=310 Identities=17% Similarity=0.167 Sum_probs=221.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++........ ..
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~~ 78 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--YTRDAGSILYLGKEVTFNGPKSS---QE 78 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 58999999999988899999999999999999999999999999999985 46789999998877643221110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+.. ......++.+++..........+ ......++.++|+.+|+.. ..++++.+|||||||||+
T Consensus 79 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 79 ---AGIGIIHQEL---NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVE 151 (501)
T ss_pred ---CCEEEEEcch---hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHH
Confidence 0111222111 11223344444421100000001 1112356788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||+.+|+|||||||||+||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+..
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~ 230 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE-REVADLTE 230 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-cCcCcCCH
Confidence 999999999999999999999999999999888764 57999999999999999999999999999864 33322110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCC
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~ 459 (548)
. .. .+... . .. ... ..| . ++.
T Consensus 231 ~----------------~~---~~~~~--------------------------~--~~---~~~-~~~-----~--~~~- 251 (501)
T PRK10762 231 D----------------SL---IEMMV--------------------------G--RK---LED-QYP-----R--LDK- 251 (501)
T ss_pred H----------------HH---HHHhc--------------------------C--CC---ccc-ccc-----c--ccc-
Confidence 0 00 00000 0 00 000 000 0 111
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce--------
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV-------- 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~-------- 525 (548)
+.++++|++++|++ .+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+... ++
T Consensus 252 -~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 252 -APGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred -CCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 12356899999985 3799999985 89999999996 8999999999999999986532 22
Q ss_pred ---eeeeeeccc
Q psy11936 526 ---TFAYEGMKP 534 (548)
Q Consensus 526 ---~~~y~~~~~ 534 (548)
.++|+.|+|
T Consensus 325 ~~~~i~~v~q~~ 336 (501)
T PRK10762 325 LANGIVYISEDR 336 (501)
T ss_pred HHCCCEEecCcc
Confidence 489999997
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=365.17 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++++|+|+||+|++|+++||+||||||||||||+|+|. ..|.+|.|.++++++.......+...
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~p~~G~V~l~g~~i~~~~~kelAk~-- 77 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--LKPKSGEVLLDGKDIASLSPKELAKK-- 77 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCCchhhcCHHHHhhh--
Confidence 58999999999999999999999999999999999999999999999984 46889999999988765443332221
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++++|.. ...+..++.+.+..- +.....++ ....++.+.++|+.+|+. .+.++++.+|||||||||.
T Consensus 78 -----ia~vpQ~~---~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 78 -----LAYVPQSP---SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVL 148 (258)
T ss_pred -----EEEeccCC---CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHH
Confidence 22233221 112233333322110 00001111 122345688899999998 4789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+++|++||||||||+||+..+..++++++++ +.|||+|+||++++.++||++++|++|+++..+.+-+.+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999988776 479999999999999999999999999999886664443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=396.82 Aligned_cols=309 Identities=18% Similarity=0.167 Sum_probs=220.1
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++........ ..
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~---~~--- 72 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--YQKDSGSILFQGKEIDFKSSKEA---LE--- 72 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCEECCCCCHHHH---Hh---
Confidence 36899999988999999999999999999999999999999999985 46789999998887643221100 00
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++......+... .......++.++|+.+|+.. ..++++.+|||||||||+||||
T Consensus 73 ~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 73 NGISMVHQEL---NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred CCEEEEeccc---ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHH
Confidence 0111111111 1112334444432110000000 00112346788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ 383 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~~ 383 (548)
|+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+-+.+..
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~---- 223 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT-QPLAGLTM---- 223 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee-cChhhCCH----
Confidence 99999999999999999999999999988764 57999999999999999999999999999864 33222100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC-CCCC
Q psy11936 384 KSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD-PPPL 462 (548)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~-~~~~ 462 (548)
.... +. ... .. .. ..++. ....
T Consensus 224 ------------~~~~---~~--------------------------~~~--~~---~~-----------~~~~~~~~~~ 246 (491)
T PRK10982 224 ------------DKII---AM--------------------------MVG--RS---LT-----------QRFPDKENKP 246 (491)
T ss_pred ------------HHHH---HH--------------------------HhC--CC---cc-----------cccccccCCC
Confidence 0000 00 000 00 00 00010 0112
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce-----------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV----------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~----------- 525 (548)
++++|+++||+++| +.+|+++||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.+. ++
T Consensus 247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 45689999999985 36999999985 99999999996 8999999999999999987642 33
Q ss_pred eeeeeeccc
Q psy11936 526 TFAYEGMKP 534 (548)
Q Consensus 526 ~~~y~~~~~ 534 (548)
.++|+.|.+
T Consensus 324 ~i~~~~q~~ 332 (491)
T PRK10982 324 GFALVTEER 332 (491)
T ss_pred CCEEcCCch
Confidence 178998875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=395.27 Aligned_cols=312 Identities=18% Similarity=0.169 Sum_probs=221.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++....... ...
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~---~~~ 78 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--YQPDAGSILIDGQEMRFASTTA---ALA 78 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHH---HHh
Confidence 58999999999988899999999999999999999999999999999985 4678899999887764221110 000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++.+.. ......++.+++..... .... ........++.++|+.+|+.. ..++++.+|||||||||+|
T Consensus 79 ---~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 79 ---AGVAIIYQEL---HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred ---CCEEEEEech---hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHH
Confidence 0111111111 11122344444321100 0000 011123456788999999974 4688999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~ 380 (548)
||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.....+....
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-- 229 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD-- 229 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC--
Confidence 99999999999999999999999999999998765 5799999999999999999999999999975322221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC
Q psy11936 381 YAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP 460 (548)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~ 460 (548)
. + ...+.+ .. ...... ... .+.
T Consensus 230 -~----------~---~~~~~~-----------------------------~~--~~~~~~------------~~~-~~~ 251 (501)
T PRK11288 230 -R----------D---QLVQAM-----------------------------VG--REIGDI------------YGY-RPR 251 (501)
T ss_pred -H----------H---HHHHHh-----------------------------cC--CCcccc------------ccc-ccc
Confidence 0 0 000000 00 000000 000 011
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------- 525 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------- 525 (548)
+.++++|+++|++++ .+|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++
T Consensus 252 ~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 252 PLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred CCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 224568999999842 4999999985 99999999997 89999999999999999875 3333
Q ss_pred --eeeeeeccc
Q psy11936 526 --TFAYEGMKP 534 (548)
Q Consensus 526 --~~~y~~~~~ 534 (548)
.++|+.|+|
T Consensus 327 ~~~i~~~~q~~ 337 (501)
T PRK11288 327 RAGIMLCPEDR 337 (501)
T ss_pred hCCCEEcCcCH
Confidence 478999987
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=347.42 Aligned_cols=224 Identities=25% Similarity=0.274 Sum_probs=182.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|++++|+++||++.+|+||||+|++|++++|+||||||||||||+|.|+ ..|.+|.|.+++.++..........
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P~~GeI~i~G~~i~~ls~~~~~~-- 82 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--LRPDKGEILIDGEDIPQLSEEELYE-- 82 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--CCCCCCeEEEcCcchhccCHHHHHH--
Confidence 469999999999999999999999999999999999999999999999985 5899999999999875443222111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+.++++|.. ..+.++++.+|+...+.+...+.....+..+..-|+.+||.....+.+|++|||||++|++||
T Consensus 83 --ir~r~GvlFQ~g---ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 83 --IRKRMGVLFQQG---ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred --HHhheeEEeecc---ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 112233333322 233456777777655444444444455667778899999998778999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|+||++||||+||||.+...+.++++++ +.|+|+||||+..+..+||||++|.+|+|.++ |+.++..
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~-Gt~~el~ 234 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE-GTPEELL 234 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe-CCHHHHH
Confidence 9999999999999999999999988887777654 67999999999999999999999999999865 7776653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=349.22 Aligned_cols=215 Identities=28% Similarity=0.432 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCce----eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISAKGND----LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~----iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
++|+++||++.|+++. +|++|||+|.+||++||||+||||||||+++|+|. ..|..|+|.+.|..+........
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--EKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCceEEECCcccCccccchh
Confidence 4689999999998877 99999999999999999999999999999999984 57899999999976654321110
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..+...+++|... ....+..++.+.+ .+.+...+....+.++.++|+.+|++..+++++|.+|||||+||
T Consensus 80 ------~~~~VQmVFQDp~-~SLnP~~tv~~~l---~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 80 ------FYRPVQMVFQDPY-SSLNPRRTVGRIL---SEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ------hccceeEEecCCc-cccCcchhHHHHH---hhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 0000111111110 0011122333322 22333334456677799999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||+.+|++||||||||+||+..+..++++|.+ ++.|+||||||+..+..+||||++|++|++++..
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 9999999999999999999999999999998888865 4679999999999999999999999999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=350.28 Aligned_cols=201 Identities=30% Similarity=0.425 Sum_probs=158.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+.+++++++|++..+|+|+||+|.+||+++||||||||||||||+|+|+ ..|.+|.|.+.++.+...... + .
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--~~p~~G~V~~~g~~v~~p~~~-~----~ 75 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--EKPTSGEVLLDGRPVTGPGPD-I----G 75 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCcccCCCCCC-E----E
Confidence 58899999999999999999999999999999999999999999999985 578899999998877332211 0 1
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..++...+++... +.+|+..... +......+..+++.++|+.+||.. ..+++|++|||||||||+|||
T Consensus 76 ~vFQ~~~LlPW~T----------v~~NV~l~l~-~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 76 YVFQEDALLPWLT----------VLDNVALGLE-LRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEeccCcccchhh----------HHhhheehhh-ccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHH
Confidence 1222223333333 3333221110 111223445668999999999985 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
||+.+|+|||||||+++||..++..+.+.| .+.+.|||+||||.+++-.++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999998876655554 455789999999999999999999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=349.31 Aligned_cols=216 Identities=27% Similarity=0.369 Sum_probs=163.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|++.++|+||||+|.+|++++||||||||||||+|+|+|. ..|..|+|.+++..+.....
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~~~g~~~~~~~~------- 73 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--LKPSSGEIKIFGKPVRKRRK------- 73 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCcceEEEcccccccccc-------
Confidence 369999999999976899999999999999999999999999999999984 46778888877765422110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
..+.+|++|... ....+..++.+.+..- +.....+. .....+.+.++|+.+|+. ++.++++++|||||+|||
T Consensus 74 ---~~~IgYVPQ~~~-~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 74 ---RLRIGYVPQKSS-VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRV 148 (254)
T ss_pred ---CCeEEEcCcccc-cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHH
Confidence 011222333221 1122344444433210 00000001 122357899999999998 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
.|||||+++|+||||||||+++|+.++..+.++|+++ ++|||+||||+..+..+||+|+.|+ ++++.+ |+.++
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~-G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIAS-GPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEec-cChhh
Confidence 9999999999999999999999999999999988765 5799999999999999999999995 555555 54443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=337.16 Aligned_cols=212 Identities=24% Similarity=0.338 Sum_probs=166.0
Q ss_pred EEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
++++||++.|+.. .+|+++||+|++||+++|+|||||||||||++|.|. ..|++|.+.+.++++...+......
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--d~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--DKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEcCcCCHHHHHH
Confidence 6799999999642 689999999999999999999999999999999974 5779999999998876544322211
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. ....++++| ..+..+..++.+++.... .+..........++..+++.+|+.+...+++|.+||||||||||
T Consensus 80 ~R---~~~iGfvFQ---~~nLl~~ltv~ENv~lpl-~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 80 LR---RKKIGFVFQ---NFNLLPDLTVLENVELPL-LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HH---HHhEEEECc---cCCCCCCCCHHHHHHhHH-HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 10 111222222 234445677888765322 12222211356778899999999866555899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+.+|+|||+||||.+||..+...++++|.++ +.||||||||...+. .|||++.|.+|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999999988888765 569999999999875 79999999999954
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=359.27 Aligned_cols=217 Identities=26% Similarity=0.313 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+++|+||+|.+||+++|+||||||||||||+|+|. ..|++|+|.+.++++......
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--e~p~~G~I~l~G~~i~~lpp~------- 75 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSGEILLDGEDITDVPPE------- 75 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh-------
Confidence 58999999999999999999999999999999999999999999999984 689999999999988653321
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+..++++|. ...++.+++.+|+..- |.... ..+...++.++|+.+++.. +.+++|++||||||||||
T Consensus 76 --kR~ig~VFQ~---YALFPHltV~~NVafG---Lk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 76 --KRPIGMVFQS---YALFPHMTVEENVAFG---LKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred --hcccceeecC---cccCCCCcHHHHhhhh---hhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHH
Confidence 1122233222 2345577777776432 33112 1235578999999999985 789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~----~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|++||||||.|+||..-+..+. ++.++.+.|+|+||||.+++..++|||++|++|+|...+.+.+.|.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999987665554 4455568899999999999999999999999999998877777775
Q ss_pred HH
Q psy11936 379 KM 380 (548)
Q Consensus 379 ~~ 380 (548)
..
T Consensus 227 ~P 228 (352)
T COG3842 227 RP 228 (352)
T ss_pred Cc
Confidence 43
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=332.55 Aligned_cols=221 Identities=23% Similarity=0.339 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++|+++||++.| +++.+|++|||+|++||+++|||+||||||||||+|+| +..|+.|+|.+.+.++.......+...
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng--l~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc--ccCCCcceEEecccchhccchHHHHHH
Confidence 469999999999 88999999999999999999999999999999999998 457889999999877755443322221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHH-------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKE-------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....+++++.. +.....++.+++.. .+..+..+.......++.++|+++|+.+ ....+..+||||
T Consensus 80 ----r~~iGmIfQ~~---nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-~A~qra~~LSGG 151 (258)
T COG3638 80 ----RRDIGMIFQQF---NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-KAYQRASTLSGG 151 (258)
T ss_pred ----HHhceeEeccC---CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHhccCCcc
Confidence 11222222211 11222333333321 1111222222344567889999999985 567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+++|+|||.|||+++|||.+...++++|++. +.|||++.|+++++.++||||+-|++|++++ .|
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg 230 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DG 230 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eC
Confidence 999999999999999999999999999999999999988764 5899999999999999999999999999985 46
Q ss_pred CHHH
Q psy11936 373 NYSM 376 (548)
Q Consensus 373 ~y~~ 376 (548)
+-++
T Consensus 231 ~~~e 234 (258)
T COG3638 231 PASE 234 (258)
T ss_pred Chhh
Confidence 6544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=381.08 Aligned_cols=313 Identities=19% Similarity=0.220 Sum_probs=210.6
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-----------EeceeeccCchh
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-----------YCEQEVVADDLT 218 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-----------~~~q~i~~~~~~ 218 (548)
+++++||.+ .+|++++ ++.+|+++||+||||||||||||+|+|. ..|..|+|. |.|+++..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~~~~G~~l~~---- 150 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE--LIPNLGDYEEEPSWDEVLKRFRGTELQN---- 150 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCccccCCCcHHHHHHHhCChHHHH----
Confidence 488999874 6999999 9999999999999999999999999985 457788876 33332210
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
....+........+..+........+..++.+++ .. .....++.++|+.+||. ...++++.+|||||+
T Consensus 151 -~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l-------~~---~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~ 218 (590)
T PRK13409 151 -YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELL-------KK---VDERGKLDEVVERLGLE-NILDRDISELSGGEL 218 (590)
T ss_pred -HHHHHhccCcceeecccchhhhhhhhcchHHHHH-------Hh---hhHHHHHHHHHHHcCCc-hhhcCChhhCCHHHH
Confidence 0000000000000000000000000111222222 11 12345788999999997 467999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+||+||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++. |.|..
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~-----g~~g~ 293 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP-----GAYGV 293 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc-----cccce
Confidence 9999999999999999999999999999999999999877 7899999999999999999999997641 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeec
Q psy11936 377 FKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456 (548)
Q Consensus 377 f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f 456 (548)
+......+ ..+........ .. ....- + .....|.+
T Consensus 294 ~~~~~~~~------------~~i~~~~~~~~---------------~~----e~~~~---~-----------~~~~~~~~ 328 (590)
T PRK13409 294 VSKPKGVR------------VGINEYLKGYL---------------PE----ENMRI---R-----------PEPIEFEE 328 (590)
T ss_pred ecchhHHH------------HhHHHHHHhcc---------------hh----hhhhc---c-----------ccCcceec
Confidence 21111100 00000000000 00 00000 0 00111222
Q ss_pred CCCC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeee
Q psy11936 457 PDPP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAY 529 (548)
Q Consensus 457 ~~~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y 529 (548)
+.+. ..+.++|+++|++++|++ ..|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.. +.++|
T Consensus 329 ~~~~~~~~~~~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y 404 (590)
T PRK13409 329 RPPRDESERETLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISY 404 (590)
T ss_pred CCCccccCCceEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEE
Confidence 2111 235679999999999965 3589999984 89999999996 899999999999999999875 78999
Q ss_pred eecccee
Q psy11936 530 EGMKPLL 536 (548)
Q Consensus 530 ~~~~~~~ 536 (548)
+.|++.+
T Consensus 405 ~~Q~~~~ 411 (590)
T PRK13409 405 KPQYIKP 411 (590)
T ss_pred ecccccC
Confidence 9999753
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.37 Aligned_cols=220 Identities=25% Similarity=0.340 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...+.......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~~--- 75 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSEAELYRL--- 75 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccChhhHHHH---
Confidence 4689999999988899999999999999999999999999999999985 46788999998877643221000000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++.. ......++.+++.................++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 76 -~~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 76 -RRRMGMLFQSG---ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred -hcceEEEccCc---ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHH
Confidence 01111222211 112233555554321110000111123456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 99999999999999999999999999998764 5799999999999999999999999999975 4666554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=369.24 Aligned_cols=201 Identities=34% Similarity=0.496 Sum_probs=166.8
Q ss_pred ccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV------PPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~------~~~g~I~~~~q~i~~~~~ 217 (548)
..++++|++++|++ +.+++++||.|.+|+++|||||||+|||||||+|+|..-+. ..+..++|++|+.....
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~- 398 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELD- 398 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcC-
Confidence 46999999999966 68999999999999999999999999999999998753221 22345666666542110
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
...++. +.+........+..++.+|..|+|+.....+++..|||||
T Consensus 399 ---------------------------~~~t~~-------d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGE 444 (530)
T COG0488 399 ---------------------------PDKTVL-------EELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGE 444 (530)
T ss_pred ---------------------------ccCcHH-------HHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhH
Confidence 001111 1122222222267789999999999888899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|.||+||++++.+|+||||||||||||+.+++.|.+.|.+|.+|||+||||++|++++|++||++.+ .+..|.|+|++|
T Consensus 445 k~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHH
Q psy11936 378 KKMY 381 (548)
Q Consensus 378 ~~~~ 381 (548)
.+..
T Consensus 524 ~~~~ 527 (530)
T COG0488 524 LEQK 527 (530)
T ss_pred HHhh
Confidence 7643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=345.13 Aligned_cols=221 Identities=25% Similarity=0.333 Sum_probs=173.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~ 223 (548)
|+|.++|+++.|+...+++||||.|..||.++|+||||||||||||+|+|+ ..|+.|.|.++++-+.... .....
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--e~p~~G~I~~~~~~l~D~~~~~~~~-- 76 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--ETPDAGRIRLNGRVLFDVSNLAVRD-- 76 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--CCCCCceEEECCEeccchhccchhh--
Confidence 468999999999999999999999999999999999999999999999985 5899999999888432211 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
++.+++++.. ..++.+++.+++..-.... ...+......++.++|..+.|+. +.+++|.+||||||||||
T Consensus 77 -----R~VGfvFQ~Y---ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVA 147 (345)
T COG1118 77 -----RKVGFVFQHY---ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVA 147 (345)
T ss_pred -----cceeEEEech---hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHH
Confidence 1222222221 2334566666553211100 11122356778999999999984 789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVI----WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~----~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|++||||||+++||...+. ||.++..+++.|+|+||||.+++.++||||++|++|+|...+.+++.|.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999997654 5555556678999999999999999999999999999998877777664
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=354.38 Aligned_cols=218 Identities=25% Similarity=0.368 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+++++||+|..||+++|+||||||||||||+|||+ ..|++|+|.+.+..+.......
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--e~~~~G~I~i~g~~vt~l~P~~------ 74 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSGEILIDGRDVTDLPPEK------ 74 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChhH------
Confidence 58999999999986699999999999999999999999999999999985 5789999999999886533211
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...+++|. ...++.+++.+|+.... .+......+.++++.++++.|++.+ +++++|.+|||||||||||||
T Consensus 75 ---R~iamVFQ~---yALyPhmtV~~Niaf~L-k~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 ---RGIAMVFQN---YALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred ---CCEEEEeCC---ccccCCCcHHHHhhhhh-hhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHH
Confidence 111122221 22345677777764322 1222334567889999999999984 789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
||+.+|+++|||||+|+||...+..+...| ++++.|+|+||||..++..++|||++|++|+|...+.+.+.|.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999997766555544 44678999999999999999999999999999999888777753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=324.85 Aligned_cols=227 Identities=22% Similarity=0.322 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.++++||++.||.+.+|+|||+.|+++.++|||||||||||||||+|....-..| -.|.|.|.|+++.......+.
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~- 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE- 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH-
Confidence 5889999999999999999999999999999999999999999999986532333 258999999998765322211
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh---hhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA---MQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~---~~~~~~~~LSGGqkq 299 (548)
..++.+++++. ...|..+.++++..-. ++........++.++..|....|.++ .+++....|||||||
T Consensus 86 ----lRr~vGMVFQk----PnPFp~SIydNVayG~-r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ 156 (253)
T COG1117 86 ----LRRRVGMVFQK----PNPFPMSIYDNVAYGL-RLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ 156 (253)
T ss_pred ----HHHHheeeccC----CCCCCchHHHHHHHhH-HhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence 11222333322 1224466666654321 12222223456778888988888753 456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|++|||||+.+|+|||||||||+|||.+...+++++.+++ -|||||||++.-+.+++|++.++..|++++|+.+-..|
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999998874 59999999999999999999999999999998888777
Q ss_pred HHHHH
Q psy11936 378 KKMYA 382 (548)
Q Consensus 378 ~~~~~ 382 (548)
...+.
T Consensus 237 ~~P~~ 241 (253)
T COG1117 237 TNPKH 241 (253)
T ss_pred cCccH
Confidence 65443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=330.82 Aligned_cols=211 Identities=23% Similarity=0.299 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..........
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~- 77 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--EKPTRGKIRFNGQDLTRLRGREIPF- 77 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEehhhcChhHHHH-
Confidence 3789999999964 4699999999999999999999999999999999985 4678899999887653221111000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..+...++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|
T Consensus 78 ---~~~~i~~~~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 78 ---LRRHIGMVFQDH---RLLSDRTVYDNVAFPLR-IIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred ---HHHhceEEecCc---cccccccHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHH
Confidence 001111222111 11223355554432111 111111123467889999999974 5688999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999876 57999999999999999999999999974
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=352.61 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++++.......+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHH
Confidence 4889999999952 4699999999999999999999999999999999984 478899999999877543221111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .+..+++++. ...+...++.+++..... +..........++.++|+.+|+.+ ..++++.+|||||||||
T Consensus 79 ~~----r~~Ig~v~Q~---~~l~~~~tv~eni~~~~~-~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 79 KA----RRQIGMIFQH---FNLLSSRTVFGNVALPLE-LDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRV 149 (343)
T ss_pred HH----hcCEEEEECC---ccccccCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 10 0111122111 112223456665533211 111112234567889999999974 67999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|++|||||||++||+.+..++.++|+++ +.|||+||||++.+..+||+|++|++|+++.. |+.+++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~-g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-GTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999988764 67999999999999999999999999999975 555443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=346.62 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+||||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+++.++..... ...
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--~~p~~G~v~i~G~~~~~~~~-~~~---- 79 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--THPDAGSISLCGEPVPSRAR-HAR---- 79 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEecccchH-HHH----
Confidence 58999999999988999999999999999999999999999999999984 46889999998887643211 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++... ..+..........++.++++.+++.. ..++++.+|||||||||+||+
T Consensus 80 ---~~ig~v~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 80 ---QRVGVVPQF---DNLDPDFTVRENLLVF-GRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred ---hcEEEEecc---CcCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHH
Confidence 112222221 1122345666665422 12221122223456788999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|++|||||||+|||+.++.+|.++|.++ +.|||++||+++++..+||+|++|++|+++.. |+.+.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~-g~~~~l~ 226 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHALI 226 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999999876 57999999999999999999999999999864 6666553
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=344.01 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||++.|+ ++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++... ...+..
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--~~p~~G~i~i~G~~~~~~-~~~~~~-- 78 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--LKPTSGEILVLGYDVVKE-PAKVRR-- 78 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEEcCEeCccC-HHHHHh--
Confidence 478899999999 69999999999999999999999999999999999985 468999999999876543 111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..+++++. .......++.+++.. +..+..........++.++|+.+||.. ..++++.+||+||||||+||
T Consensus 79 -----~igy~~~~---~~~~~~lT~~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 79 -----RIGYVPQE---PSLYPELTVRENLEF-FARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred -----heEEEccC---CCCCccccHHHHHHH-HHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHH
Confidence 12222221 112334566666543 223332222234678999999999986 44888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---K-KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~-~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
+||+.+|+||||||||||||+.++..+.++|+.+ + .|||++||.++.+..+||+|++|++|++++++ ..+++.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g-~~~~l~ 225 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG-TPEELK 225 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC-CHHHHH
Confidence 9999999999999999999999999999999876 3 59999999999999999999999999999875 655543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=329.22 Aligned_cols=208 Identities=27% Similarity=0.339 Sum_probs=160.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ...
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~--~~~---- 72 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--ERPDSGEILIDGRDVTGVPP--ERR---- 72 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcCcCch--hhc----
Confidence 4689999999988899999999999999999999999999999999985 46788999998876532110 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 73 ---~i~~v~q~~---~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 ---NIGMVFQDY---ALFPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred ---cEEEEcCch---hhccCCcHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHH
Confidence 111111111 11122344444422111 100111122456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999999764 57999999999999999999999999998753
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=335.58 Aligned_cols=219 Identities=28% Similarity=0.425 Sum_probs=171.0
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc-CchhHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA-DDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~-~~~~~~~~ 222 (548)
+++.++|++++|++. .+|+++||+|.+|++++|+|+||||||||+++|+|. ..|.+|.|.+.+..+.. .+...+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--l~p~~G~v~~~g~~~~~~~~~~~~~- 78 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSGEVLVDGLDTSSEKSLLELR- 78 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--CcCCCCEEEECCeeccchhhHHHhh-
Confidence 368899999999775 899999999999999999999999999999999985 47888999777765432 1111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
+..+++.|.+ ....+..++.+.+ ...+.+.+.. +.+.++.++|..+|+.. ..++++.+|||||+||
T Consensus 79 ------~~vG~VfQnp--d~q~~~~tV~~ev---afg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqR 146 (235)
T COG1122 79 ------QKVGLVFQNP--DDQLFGPTVEDEV---AFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQR 146 (235)
T ss_pred ------cceEEEEECc--ccccccCcHHHHH---hhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceee
Confidence 1112222211 1122334444332 2233334332 36688999999999985 5899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+||.+|+++|++|||||||++||+.++.++.+++.++ +.|||+||||++++..+||++++|++|+++..+.+++.
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 99999999999999999999999999999999999876 36999999999999999999999999999876545555
Q ss_pred HH
Q psy11936 377 FK 378 (548)
Q Consensus 377 f~ 378 (548)
|.
T Consensus 227 ~~ 228 (235)
T COG1122 227 FN 228 (235)
T ss_pred hh
Confidence 43
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=318.60 Aligned_cols=212 Identities=23% Similarity=0.320 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~~ 221 (548)
+|+++||++.|++ .++|+||||+|.+||++-|+||||||||||||+|++. ..|+.|.|.++++++.... ...++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--ERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--hcCCCceEEECCeecccccccccchhh
Confidence 4889999999954 5599999999999999999999999999999999974 5799999999999886432 22222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
..++..++...+ ..+.++.+++..... ........+..++.++|+.+||.+ ..+..|.+|||||||||
T Consensus 79 R~IGvVFQD~rL----------L~~~tvyeNVA~pL~-v~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LSGGEQQRv 146 (223)
T COG2884 79 RQIGVVFQDFRL----------LPDRTVYENVALPLR-VIGKPPREIRRRVSEVLDLVGLKH-KARALPSQLSGGEQQRV 146 (223)
T ss_pred heeeeEeeeccc----------cccchHhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhccch-hhhcCccccCchHHHHH
Confidence 222222222111 234455555543221 122334456789999999999985 46788999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
+||||++.+|++||.||||.+|||.....+++++.++ +.||||.|||.+.++.+--|++.|++|+++.+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999988888877665 679999999999999999999999999999764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=329.84 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=165.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~- 78 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--IDPTEGSILIDGVDIKTIDVIDLRRK- 78 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcChHHhhhc-
Confidence 358999999999888899999999999999999999999999999999985 46789999998877632211111110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++++... .+..++.+++... . ... .....++.++++.+|+.....++++.+|||||+|||+||
T Consensus 79 ------i~~~~q~~~----~~~~tv~e~l~~~---~-~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 79 ------IGMVFQQPH----LFEGTVKDNIEYG---P-MLK-GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred ------EEEEecCch----hchhhHHHHHhcc---h-hhc-CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 111111110 1112333332110 0 011 122456788999999974567889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++..+...+.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999999988764 679999999999999999999999999999775555443
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=326.95 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+... .....
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~-~~~~~----- 72 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGRATVAGHDVVRE-PREVR----- 72 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecCcC-hHHHh-----
Confidence 4689999999988999999999999999999999999999999999985 467889999888765321 11110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 73 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 --RRIGIVFQDL---SVDDELTGWENLYIHA-RLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred --hcEEEecCCc---cccccCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHH
Confidence 1111122111 1112234444443211 1111111223457889999999974 5789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~ 216 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE-GTP 216 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-CCh
Confidence 99999999999999999999999999988764 57999999999999999999999999999865 443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=342.05 Aligned_cols=217 Identities=25% Similarity=0.319 Sum_probs=167.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
++|+++||+++|++..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~~--- 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--ISPDRGKITVLGEPVPSRA-RLAR--- 76 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccH-HHHh---
Confidence 368999999999988899999999999999999999999999999999985 4678999999887653211 1000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++.. ......++.+++... ..+..........++.++++.+|+.. ..++++.+|||||||||+||
T Consensus 77 ----~~i~~v~q~~---~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 77 ----VAIGVVPQFD---NLDPEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred ----hcEEEEeccc---cCCcCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHH
Confidence 1111222211 112234555554321 11111111122346778999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 222 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE-GRPHAL 222 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999876 57999999999999999999999999999864 665544
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=346.46 Aligned_cols=217 Identities=26% Similarity=0.357 Sum_probs=169.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++|.++.... ....
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--~~p~~G~i~i~G~~~~~~~-~~~~--- 113 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--TSPDAGKITVLGVPVPARA-RLAR--- 113 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCceEEEECCEECCcch-HHHh---
Confidence 469999999999999999999999999999999999999999999999985 4688999999998764221 1110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++. .......++.+++... ..+..........++.++++.+|+.. ..++++.+|||||||||+||
T Consensus 114 ----~~ig~v~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 114 ----ARIGVVPQF---DNLDLEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred ----ccEEEEeCC---ccCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHH
Confidence 111122211 1112234555554321 11111111123456778999999984 57899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+||+.+|+||||||||++||+.++.+|.++|.++ +.|||++||+++++..+||+|++|++|+++.. |+.+.+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~-g~~~~l 259 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE-GRPHAL 259 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999999875 57999999999999999999999999999865 665554
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=315.98 Aligned_cols=215 Identities=24% Similarity=0.385 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|++.+++++|+..+ +++||||++..|+++||+|+|||||||+||+|+++ ..|++|.|.+++-+........ .
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--L~P~~G~v~idg~d~~~~p~~v-r--- 74 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSGKVTIDGVDTVRDPSFV-R--- 74 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--ccCCCceEEEeecccccChHHH-h---
Confidence 488999999999876 89999999999999999999999999999999974 5799999999887765433221 1
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+..++++.. ......++..+++.. +..+..++..+.+.++.++.+.|++. +..++++..||-||||||+||
T Consensus 75 ----r~IGVl~~e---~glY~RlT~rEnl~~-Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 75 ----RKIGVLFGE---RGLYARLTARENLKY-FARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred ----hhcceecCC---cChhhhhhHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHH
Confidence 111222110 111224556666643 44566666777889999999999997 468999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+++|++|+|||||||||..+...+.+++.+. +.+||+.||++.++..+||+|++|++|.+++ .|+.+.
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~-~gs~~~ 219 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL-EGSIEA 219 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE-cCCHHH
Confidence 9999999999999999999999999999988765 5799999999999999999999999999985 566544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=339.56 Aligned_cols=217 Identities=24% Similarity=0.418 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++|++++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--~~~~~G~i~i~g~~~~~~~-~~~~---- 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNP-KEVQ---- 74 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCh-HHHH----
Confidence 58899999999988999999999999999999999999999999999985 4688999999887664311 1111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++... ..+..........++.++++.+|+.. ..++++..|||||+|||+|||
T Consensus 75 ---~~ig~~~q~---~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 75 ---RNIGYLPEH---NPLYLDMYVREYLQFI-AGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred ---hceEEecCC---CCCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHH
Confidence 111222221 1122234555554321 11111111223467889999999985 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|++|||||||+|||+.++.++.++|..+ +.|||++||+++++..+||+|++|++|+++. .|+.+.+.
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKLDELS 220 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999887 4799999999999999999999999999985 58877653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=323.97 Aligned_cols=208 Identities=26% Similarity=0.345 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~v~~~g~~~~~~~~~--~----- 71 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPPK--D----- 71 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc--c-----
Confidence 4689999999988999999999999999999999999999999999985 467889999988776321110 0
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 72 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 72 --RDIAMVFQNY---ALYPHMTVYDNIAFGL-KLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred --ceEEEEecCh---hhccCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHH
Confidence 0111111111 1112234444442211 111111122345678899999997 45789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999998764 57999999999999999999999999999865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=326.29 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.... .|.+|+|.+.+.++...+.. ....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~-~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD-VLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH-HHHH
Confidence 4689999999988999999999999999999999999999999999985210 57789999988765322100 0000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHhCCCChhhhhcc--cCCCCHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS---AEPRARRILAGLGFSRAMQDRA--TKNFSGGWR 298 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~~~~L~~lgl~~~~~~~~--~~~LSGGqk 298 (548)
.....++++... .+..++.+++.... ...+... ...++.++++.+|+.. ..++. +.+|||||+
T Consensus 80 ----~~~i~~~~q~~~----~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 80 ----RRRVGMVFQKPN----PFPGSIYDNVAYGL---RLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQ 147 (227)
T ss_pred ----HhhEEEEecCch----hccccHHHHHHhHH---HhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHH
Confidence 001111111111 11334444442211 1111111 3456788999999975 34555 599999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++. .|||+||||++++..+||+|++|++|+++.+
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999998763 6999999999999999999999999999865
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=340.09 Aligned_cols=225 Identities=24% Similarity=0.355 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++. .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEEeceeccccccccc
Confidence 48999999999753 599999999999999999999999999999999985 4678899988765432100
Q ss_pred ---------hhHH---H-HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCC
Q psy11936 217 ---------LTAV---E-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGF 281 (548)
Q Consensus 217 ---------~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl 281 (548)
.... . ..........+++++.. ....+..++.+++.. .....+. .....++.++|+.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~--~~~l~~~tv~e~i~~---~~~~~~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA--EYQLFEQTIEKDIIF---GPVSMGVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCc--ccccccccHHHHHHh---hHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 0000 0 00000001112222211 011223344444421 1111121 2345678899999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCE
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadr 358 (548)
.....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+|||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 755679999999999999999999999999999999999999999999999988764 67999999999999999999
Q ss_pred EEEEeCCEEEEEcCCHHHH
Q psy11936 359 IIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 359 Ii~L~~G~i~~~~g~y~~f 377 (548)
|++|++|+++..+.+++.|
T Consensus 235 v~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999998765444434
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=347.81 Aligned_cols=213 Identities=26% Similarity=0.352 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~~--~---- 77 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--EKPTEGQIFIDGEDVTHRSIQ--Q---- 77 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCHH--H----
Confidence 69999999999988899999999999999999999999999999999985 478899999999877432210 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...++..++.+++..... +..........++.++++.+|+.. +.++++.+|||||+|||+|||
T Consensus 78 ---r~ig~vfQ~---~~lfp~~tv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 ---RDICMVFQS---YALFPHMSLGENVGYGLK-MLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred ---CCEEEEeCC---cccCCCCCHHHHHHHHHh-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 111222221 112334566666543211 111122234568889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+||||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+ +.+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g-~~~ 222 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG-SPQ 222 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc-CHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999864 443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=327.45 Aligned_cols=220 Identities=23% Similarity=0.297 Sum_probs=164.8
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~-- 76 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGSVLIDGTDINKLKGKALRQL-- 76 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEeccccCHhHHHHH--
Confidence 468999999987 7899999999999999999999999999999999985 36788999998876643221000000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-------HHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-------ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.....++++.. ..++..++.+++..... .+..........++.++++.+|+. ...++++.+||||||
T Consensus 77 --~~~i~~~~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~ 150 (241)
T cd03256 77 --RRQIGMIFQQF---NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQ 150 (241)
T ss_pred --HhccEEEcccC---cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHH
Confidence 01111222111 11122344444421110 000001122345678899999997 457889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~ 229 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD-GPP 229 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee-cCH
Confidence 9999999999999999999999999999999999988764 57999999999999999999999999999864 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 230 ~~~ 232 (241)
T cd03256 230 AEL 232 (241)
T ss_pred HHh
Confidence 654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=348.02 Aligned_cols=216 Identities=23% Similarity=0.288 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+..... ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~--~~---- 75 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--ERQTAGTIYQGGRDITRLPP--QK---- 75 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH----
Confidence 58999999999988899999999999999999999999999999999985 47889999999887643211 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...++..++.+++..... ...........++.++++.+||.. +.++++.+|||||||||+|||
T Consensus 76 ---r~ig~v~Q~---~~lfp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 ---RDYGIVFQS---YALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred ---CCEEEEeCC---cccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHH
Confidence 111222221 122334567666643211 111112234567899999999984 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++.++.+.+.|
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999875544444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=327.62 Aligned_cols=221 Identities=25% Similarity=0.332 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++....... ..
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~-~~--- 74 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--EEITSGDLIVDGLKVNDPKVDE-RL--- 74 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCChhH-HH---
Confidence 37899999999988899999999999999999999999999999999985 4678999999887664211100 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
......++.+.. ...+..++.+++.................++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 75 -~~~~i~~~~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~ 149 (240)
T PRK09493 75 -IRQEAGMVFQQF---YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIAR 149 (240)
T ss_pred -HhhceEEEeccc---ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHH
Confidence 001111222111 112234555544321111111111223456788999999974 568999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 999999999999999999999999999998765 5799999999999999999999999999985 47776653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=325.03 Aligned_cols=210 Identities=23% Similarity=0.346 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++..........
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--DRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--cCCCceeEEECCEehhhcchhHHHH
Confidence 468999999986 6899999999999999999999999999999999985 4678899999887653221111000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. .....++.+.. ..+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 79 ~~---~~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03255 79 FR---RRHIGFVFQSF---NLLPDLTALENVELPL-LLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVA 150 (218)
T ss_pred HH---hhcEEEEeecc---ccCCCCcHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHH
Confidence 00 00111111111 1122335555443211 1111111123456788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++. +||+|++|++|++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999998765 579999999999997 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=333.50 Aligned_cols=221 Identities=24% Similarity=0.310 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+...........
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~-- 82 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--IAPDHGEILFDGENIPAMSRSRLYTV-- 82 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccChhhHHHH--
Confidence 58999999999988999999999999999999999999999999999985 46788999998876643221111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ......++.+++.................++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 83 --~~~i~~v~q~~---~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 83 --RKRMSMLFQSG---ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred --hhcEEEEeccc---ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHH
Confidence 00111122111 112233555554321111000111112346778899999974 578899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 231 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH-GSAQAL 231 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999988765 57999999999999999999999999999864 665554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=324.96 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++. ++|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.++++.. ....+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~-~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPDAGFATVDGFDVVK-EPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCceEEECCEEccc-CHHHHH
Confidence 37899999999876 799999999999999999999999999999999984 46788999998876642 111110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....++++.. ..+...++.+++.... .+..........++.++++.+|+. ...++++.+|||||+|||
T Consensus 78 -------~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 78 -------RRLGFVSDST---GLYDRLTARENLEYFA-GLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred -------hhEEEecCCc---ccCcCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHH
Confidence 1111122111 1112235555543211 111111122345778899999997 467899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999999999999999999999999875 57999999999999999999999999999753
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.90 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=165.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~~~~~~~~~ 223 (548)
.+|+++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+. .+........
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~~igy~~Q~~~--- 385 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--LAPVSGEIGLAKGIKLGYFAQHQL--- 385 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCCEEEEEecCcch---
Confidence 369999999999998999999999999999999999999999999999985 3577788776421 1110000000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.......++.+.+ ..........++..+|..|+|.....++++.+|||||||||+|
T Consensus 386 -----------------~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 386 -----------------EFLRADESPLQHL-------ARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred -----------------hhCCccchHHHHH-------HHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHH
Confidence 0000011111111 1111122345788999999997556789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|++|+.+|+||||||||||||+.++.+|.++|..+++|||+||||++++..+||+|++|++|+++.|.|+|++|.+
T Consensus 442 a~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999999989999999999999999999999999999989999999954
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=347.71 Aligned_cols=214 Identities=24% Similarity=0.303 Sum_probs=169.3
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++| ++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ..
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~~--~~--- 75 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--ERITSGEIWIGGRVVNELEP--AD--- 75 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH---
Confidence 58999999999 788899999999999999999999999999999999985 46889999999987743211 10
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+...++++. ...++..++.+++..... ...........++.++|+.+|+. ...++++.+|||||||||+||
T Consensus 76 ----r~ig~v~Q~---~~lfp~~tv~eNi~~~~~-~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 76 ----RDIAMVFQN---YALYPHMSVRENMAYGLK-IRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred ----CCEEEEeCC---ccccCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 111222221 112234566666643211 11111123346788999999997 478999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||+.++..+||+|++|++|+++.+ |+.++
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~-g~~~~ 221 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI-GTPVE 221 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE-CCHHH
Confidence 9999999999999999999999999888877653 67999999999999999999999999999976 44443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=321.96 Aligned_cols=210 Identities=26% Similarity=0.333 Sum_probs=158.7
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++|++++| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~- 77 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--LTPSRGQVRIAGEDVNRLRGRQLPLL- 77 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHHHH-
Confidence 37899999999 567899999999999999999999999999999999985 45789999998877643221110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ......++.+++.... .+..........++.++++.+|+.. ..++.+.+|||||+|||+||
T Consensus 78 ---~~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 78 ---RRRIGVVFQDF---RLLPDRTVYENVALPL-EVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred ---HhheEEEecCh---hhccCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHH
Confidence 00111111111 1112234444443211 1111111123457788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999865 5799999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=322.66 Aligned_cols=208 Identities=28% Similarity=0.429 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+|+||+|.+| ++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+.
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~~----- 71 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL--TPPSSGTIRIDGQDVLKQP-QKLR----- 71 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCCccccch-HHHH-----
Confidence 46899999998888999999999999 9999999999999999999985 4678999999887653211 1110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ..+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 72 --~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 --RRIGYLPQEF---GVYPNFTVREFLDYIA-WLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred --hheEEecCCC---cccccCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHH
Confidence 1111122111 1112234555443211 1111111223456788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999876 47999999999999999999999999999753
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=321.33 Aligned_cols=205 Identities=29% Similarity=0.415 Sum_probs=156.3
Q ss_pred EEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 149 VENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 149 l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~---- 75 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--LGPTSGEVLVDGKDLTKLSLKELRR---- 75 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEcccCCHHHHHh----
Confidence 6799999987 7899999999999999999999999999999999985 4678899999887664322111111
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...++.+... ...+..++.+++.... ............++.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 76 ---~i~~~~q~~~--~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 76 ---KVGLVFQNPD--DQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred ---hceEEecChh--hhcCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHH
Confidence 1112221110 0112334444442211 010011112345678899999997 45788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999765 4699999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=332.00 Aligned_cols=218 Identities=26% Similarity=0.373 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~-- 79 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--YLPQRGRVKVMGREVNAENEKWVRS-- 79 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHh--
Confidence 589999999996 56799999999999999999999999999999999985 4678999999988764322111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++++.. ....+..++.+++.... ............++..+|+.+|+. ...++++.+|||||+|||+||
T Consensus 80 -----~i~~v~q~~--~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 80 -----KVGLVFQDP--DDQVFSSTVWDDVAFGP-VNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred -----hEEEEecCh--hhhhccCcHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 111222211 01112234444443111 011111112345678899999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.|
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE-GDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHh
Confidence 9999999999999999999999999999999765 57999999999999999999999999999865 555554
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=326.33 Aligned_cols=221 Identities=21% Similarity=0.317 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.+.+.++..........
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~---- 76 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR---- 76 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc----
Confidence 4689999999988899999999999999999999999999999999985212578899999887664322111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc------CCCChHHHHHHHHHhCCCChhhhhcccC-CCCHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI------GADSAEPRARRILAGLGFSRAMQDRATK-NFSGGWRM 299 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqkq 299 (548)
....+..+.. ......++.+++.......... .......++.++++.+|+.....++++. +|||||||
T Consensus 77 --~~i~~v~q~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 77 --AGLFLAFQYP---EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred --cceEeeeccc---cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 0011111111 1112233444433221111100 1112245678899999997545677776 59999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y~ 375 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++. .|+.+
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~ 230 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVE 230 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHH
Confidence 999999999999999999999999999999999999876 47999999999999998 89999999999975 46766
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
.+
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=335.15 Aligned_cols=219 Identities=23% Similarity=0.363 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||++.|++ +.+|+||||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++..... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEECCEECCCcCccHH
Confidence 4889999999974 4699999999999999999999999999999999985 46889999999887643211 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGq 297 (548)
.+.. ..+++++... ...+..++.+++.... ............++.++|+.+||. ....++++.+|||||
T Consensus 80 ~~~~-------~ig~v~q~~~--~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 80 DIRK-------KVGLVFQYPE--YQLFEETIEKDIAFGP-INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ 149 (287)
T ss_pred HHhh-------ceEEEecCch--hccccccHHHHHHhHH-HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence 1111 1122222110 1112334555443111 111111122345688999999996 235789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~-g~ 228 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ-GT 228 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CC
Confidence 99999999999999999999999999999999999998764 57999999999999999999999999999975 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 229 ~~~~ 232 (287)
T PRK13637 229 PREV 232 (287)
T ss_pred HHHH
Confidence 5443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=328.07 Aligned_cols=215 Identities=27% Similarity=0.346 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~--~---- 73 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--ERPDSGTILFGGEDATDVPVQ--E---- 73 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCCcc--c----
Confidence 58999999999988899999999999999999999999999999999985 467889999988765321110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc----CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI----GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....++.+.. ......++.+++..... .... .......++.++++.+|+. ...++++.+|||||+|||
T Consensus 74 ---~~i~~v~q~~---~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl 145 (239)
T cd03296 74 ---RNVGFVFQHY---ALFRHMTVFDNVAFGLR-VKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRV 145 (239)
T ss_pred ---cceEEEecCC---cccCCCCHHHHHhhhhh-hccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHH
Confidence 0011111110 11122344444422111 1000 0111234677899999997 457889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV-GTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHHHH
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999864 555443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=320.04 Aligned_cols=200 Identities=27% Similarity=0.417 Sum_probs=156.0
Q ss_pred EEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 149 VENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 149 l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
++||+++|++ +.+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+.. ....
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~---~~~~------ 70 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKA---KERR------ 70 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEhhh---HHhh------
Confidence 6799999987 7899999999999999999999999999999999985 46889999988876521 0000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....++++... ...+..++.+++.... ... .....++.++++.+|+.. ..++++.+|||||||||+|||||
T Consensus 71 -~~i~~~~q~~~--~~~~~~tv~e~l~~~~---~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral 141 (205)
T cd03226 71 -KSIGYVMQDVD--YQLFTDSVREELLLGL---KEL--DAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred -cceEEEecChh--hhhhhccHHHHHhhhh---hhc--CccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHH
Confidence 01111111110 0011223444432111 111 122457889999999974 57899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999876 579999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=328.27 Aligned_cols=225 Identities=27% Similarity=0.369 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH-HHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA-VESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~-~~~~~ 224 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.++.+....... .....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--EQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccccccchhhHH
Confidence 58999999999988899999999999999999999999999999999985 4678899999888764221000 00000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
........++.+.. ......++.+++.................++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 81 ~~~~~~i~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 81 RQLRQHVGFVFQNF---NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred HHhhhhEEEEecCc---ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHH
Confidence 00000111111111 111234555554321111111111123456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 231 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ-GPAKAL 231 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999988764 57999999999999999999999999999864 666554
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=326.70 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~---- 74 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--IEPTSGEIFIDGEDIREQDPVELR---- 74 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCeEcCcCChHHhh----
Confidence 468999999988 7899999999999999999999999999999999985 467889999988765432211111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ...++++.+|||||+|||+||
T Consensus 75 ---~~i~~~~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 75 ---RKIGYVIQQI---GLFPHMTVEENIALVP-KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred ---cceEEEccCc---cccCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 0111222211 1122345555543211 1111111123456788999999974 367899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||+|++|++|+++.. |+.+.+
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 223 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV-GTPDEI 223 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999988764 57999999999999999999999999999865 555443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=326.01 Aligned_cols=222 Identities=23% Similarity=0.336 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~~~ 222 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--EMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccccchhhHHH
Confidence 58999999999988999999999999999999999999999999999985 4678899999888653110 000000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
. .....++++.. ......++.+++......+..........++.++++.+|+. ...++.+.+|||||+|||+
T Consensus 80 ~----~~~i~~~~q~~---~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 80 L----RRNVGMVFQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred H----HhheEEEecCc---cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHH
Confidence 0 00111111111 11123345554432111111111112345678899999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|+++. .|+++.+.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHhc
Confidence 999999999999999999999999999999998864 5799999999999999999999999999985 47776653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=326.29 Aligned_cols=218 Identities=23% Similarity=0.321 Sum_probs=164.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~---- 74 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIAR---- 74 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEECCCCCHHHHHh----
Confidence 4689999999988899999999999999999999999999999999985 3678899999887664322111100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---------CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---------GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---------~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....++++.. ......++.+++.......... .......++.++++.+|+.. ..++++.+|||||
T Consensus 75 --~~i~~v~q~~---~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~ 148 (236)
T cd03219 75 --LGIGRTFQIP---RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQ 148 (236)
T ss_pred --cCEEEEeccc---ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHH
Confidence 0011111111 1112234555443211100000 01122446788999999974 5788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.
T Consensus 149 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 227 (236)
T cd03219 149 QRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTP 227 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCH
Confidence 99999999999999999999999999999999999999764 4799999999999999999999999999985 4665
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 228 ~~~ 230 (236)
T cd03219 228 DEV 230 (236)
T ss_pred HHh
Confidence 543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=343.55 Aligned_cols=219 Identities=25% Similarity=0.345 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+ ++.+|+|+||+|++|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--ERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHH
Confidence 488999999997 36799999999999999999999999999999999985 467899999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .....++++. ...+...++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||
T Consensus 79 ~~----~~~ig~v~q~---~~l~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 79 KA----RRQIGMIFQH---FNLLSSRTVFDNVALPL-ELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRV 149 (343)
T ss_pred HH----hcCEEEEeCC---CccCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 00 0111111111 11122345555553221 1111111123457788999999974 57899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~-g~~~~ 227 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ-GTVSE 227 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 9999999999999999999999999999999998765 57999999999999999999999999999865 54443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=345.78 Aligned_cols=216 Identities=27% Similarity=0.346 Sum_probs=168.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|.|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++..... ..
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~~--~~--- 73 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--EHQTSGHIRFHGTDVSRLHA--RD--- 73 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCH--HH---
Confidence 358999999999988999999999999999999999999999999999985 46889999999987643211 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+...++++. ...+...++.+++........ .........++.++|+.+|+. ...++++.+|||||+|||
T Consensus 74 ----r~i~~v~Q~---~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 74 ----RKVGFVFQH---YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRV 145 (353)
T ss_pred ----CCEEEEecC---cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHH
Confidence 111122221 112234566665532211000 011112356788999999997 467999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~-g~~~~ 223 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA-GTPDQ 223 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 9999999999999999999999999998888887654 57999999999999999999999999999976 44433
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=326.33 Aligned_cols=221 Identities=25% Similarity=0.322 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~- 77 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--VEPSSGSILLEGTDITKLRGKKLRKL- 77 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCccEEEECCEEhhhCCHHHHHHH-
Confidence 378999999998 77899999999999999999999999999999999985 46788999998876532211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-------HHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-------ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.....++++.. ......++.+++..... .+..........++.++++.+|+. ...++++.+|||||
T Consensus 78 ---~~~i~~v~q~~---~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 78 ---RRRIGMIFQHY---NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQ 150 (243)
T ss_pred ---HhheEEEcCCC---cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHH
Confidence 01111111110 11122344444321100 000000112345678899999997 45788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~ 229 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGA 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCC
Confidence 99999999999999999999999999999999999998765 5799999999999999999999999999985 466
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+.+
T Consensus 230 ~~~~ 233 (243)
T TIGR02315 230 PSEL 233 (243)
T ss_pred HHHh
Confidence 6554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.53 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+++ ++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--ERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcccCCHHHHH
Confidence 37899999999876 899999999999999999999999999999999985 467889999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .....++++. ...+...++.+++..... ............+.++++.+|+. ...++++.+|||||+|||
T Consensus 79 ~~----~~~i~~~~q~---~~~~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 79 KA----RRRIGMIFQH---FNLLSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRV 149 (233)
T ss_pred HH----HhheEEEccC---cccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHH
Confidence 00 0111112211 111223455555432111 11111112245678899999997 456889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|+++.. |+.+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999999998764 57999999999999999999999999999864 565543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=322.67 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=158.7
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++. .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+...+.....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEccccchhhHH
Confidence 37899999999765 799999999999999999999999999999999985 467889999988766432110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--C-hHHH-HHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--S-AEPR-ARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~-~~~~-~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.. .....++.+.... ......++.+++... +...+.. . .... +.++++.+++.....++++.+|||||
T Consensus 79 ~~----~~~i~~~~q~~~~-~~~~~~tv~~nl~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 150 (228)
T cd03257 79 IR----RKEIQMVFQDPMS-SLNPRMTIGEQIAEP---LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQ 150 (228)
T ss_pred Hh----hccEEEEecCchh-hcCCcCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHH
Confidence 00 0011111111100 011223444444221 1111111 1 1122 25789999996446788999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999999998765 5799999999999999999999999999875
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=321.74 Aligned_cols=210 Identities=25% Similarity=0.388 Sum_probs=158.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~-~~~~--- 74 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--EEPDSGTIIIDGLKLTDDKKN-INEL--- 74 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccchh-HHHH---
Confidence 4689999999988999999999999999999999999999999999985 467889999988765321100 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++.+.. ......++.+++.................++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 75 -~~~i~~~~q~~---~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 149 (213)
T cd03262 75 -RQKVGMVFQQF---NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARA 149 (213)
T ss_pred -HhcceEEeccc---ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHH
Confidence 01111111111 111223454544321111111111123456788999999974 5789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999865 57999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=328.59 Aligned_cols=226 Identities=26% Similarity=0.336 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh--HH---
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT--AV--- 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~--~~--- 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+...... .+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccccccccccccc
Confidence 48999999999988999999999999999999999999999999999985 457889999988765321000 00
Q ss_pred H-HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 221 E-SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
. ...........++++.. ......++.+++......+..........++.++++.+|+.....++++.+|||||+|
T Consensus 83 ~~~~~~~~~~~i~~v~q~~---~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHF---NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred cchHHHHHhhceEEEecCc---ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 0 00000000111111110 1111234555543211111111112234577889999999754457889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 5799999999999999999999999999986 477766
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=333.93 Aligned_cols=220 Identities=24% Similarity=0.331 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hH
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~ 219 (548)
+|+++||+++|+.. .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--LQPTEGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEECcccccccc
Confidence 48899999999732 599999999999999999999999999999999985 46889999998887632110 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.... .....++.+.. ....+..++.+++... ....+ ......++.++|+.+|+.....++++.+|||||
T Consensus 79 ~~~~----~~~ig~v~q~~--~~~l~~~tv~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 149 (288)
T PRK13643 79 IKPV----RKKVGVVFQFP--ESQLFEETVLKDVAFG---PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQ 149 (288)
T ss_pred HHHH----HhhEEEEecCc--chhcccchHHHHHHhH---HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHH
Confidence 0000 01111222111 0012223444444311 11112 122345688999999996556789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||||+|||||+.+|+||||||||++||+.++.+|.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~-g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC-GTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999999999999999999999999999999999988754 57999999999999999999999999999865 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 229 ~~~ 231 (288)
T PRK13643 229 SDV 231 (288)
T ss_pred HHH
Confidence 554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=369.60 Aligned_cols=210 Identities=27% Similarity=0.407 Sum_probs=167.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+ +..+..
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--~~p~~G~i~~-~~~~~i---------- 384 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--LQADSGRIHC-GTKLEV---------- 384 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEE-CCCcEE----------
Confidence 369999999999988999999999999999999999999999999999985 3677888866 332100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++.+.. .......++.+++..... ..........+..+|..|+|.....++++.+|||||||||+||
T Consensus 385 -------~y~~q~~--~~l~~~~tv~e~l~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 385 -------AYFDQHR--AELDPEKTVMDNLAEGKQ---EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred -------EEEeCcc--cccCCCCCHHHHHHhhcc---cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 0000000 001112233333321100 0000112446788999999975567899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe-CCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD-QQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~-~G~i~~~~g~y~~f~~ 379 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|+ +|+++.|.|+|++|..
T Consensus 453 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 453 RLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999999998999999999999999999999998 8999999999999964
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.98 Aligned_cols=219 Identities=20% Similarity=0.324 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCC----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~ 215 (548)
+|+++||++.|+. ..+|+||||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--ETPTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCcEEEECCEEcCcC
Confidence 5899999999962 4699999999999999999999999999999999985 357789999998876433
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
........ .....++++... .......++.+++.................++.++|+.+||.....++++.+|||
T Consensus 83 ~~~~~~~~----r~~i~~v~Q~~~-~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 83 DPEAQKLL----RQKIQIVFQNPY-GSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred CHHHHHHH----hCCEEEEEcCch-hhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 22111110 011122222110 0111222333333221111011112223467889999999975567999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||+|++|++|++++++
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999988654 679999999999999999999999999999864
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=321.86 Aligned_cols=205 Identities=29% Similarity=0.370 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~------ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPVTGPG------ 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECcccc------
Confidence 468999999987 7899999999999999999999999999999999985 4678899998887653110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++++.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||||||+
T Consensus 73 ------~~i~~v~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 73 ------PDRGYVFQQD---ALLPWLTVLDNVALGL-ELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVA 141 (220)
T ss_pred ------CcEEEEeccc---ccccCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHH
Confidence 0011111110 1111234444432211 1111111123456788999999974 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYY 370 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~ 370 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++..
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 999999999999999999999999999999998764 5799999999999999999999999 7998753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=332.26 Aligned_cols=219 Identities=22% Similarity=0.362 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++ ..+|+||||+|.+|+++||+|+|||||||||++|+|. ..|..|+|.+++.++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 4899999999964 3699999999999999999999999999999999984 4688999999988764311
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...+.. ..+++++.. ....+..++.+++..... ...........++.++|..+|+.....++++.+||||
T Consensus 80 ~~~~~~-------~ig~v~q~~--~~~l~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 80 IRPVRK-------RIGMVFQFP--ESQLFEDTVEREIIFGPK-NFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred HHHHHh-------heEEEecCh--HhccchhhHHHHHHhhHH-HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 111111 112222211 001122244444321110 0011112244677899999999744678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.. |
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~-g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ-T 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 999999999999999999999999999999999999998764 57999999999999999999999999999865 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 229 ~~~~~ 233 (286)
T PRK13646 229 SPKEL 233 (286)
T ss_pred CHHHH
Confidence 65553
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=319.52 Aligned_cols=206 Identities=25% Similarity=0.421 Sum_probs=160.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+.. ...
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~----~~~----- 69 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGEVLFDGKPLDI----AAR----- 69 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCCchhH----HHH-----
Confidence 4689999999988899999999999999999999999999999999985 46788999988765421 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+.. ......++.+++... ..+...........+.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 70 --~~i~~~~q~~---~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 70 --NRIGYLPEER---GLYPKMKVIDQLVYL-AQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred --ccEEEeccCC---cCCcCCcHHHHHHHH-HHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHH
Confidence 0111111111 111223455544321 11111111223456788999999974 5688899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|++|+++.+
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 99999999999999999999999999999865 47999999999999999999999999999754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.03 Aligned_cols=224 Identities=20% Similarity=0.329 Sum_probs=169.1
Q ss_pred ccEEEEeEEEEeCC-------------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 145 VDIKVENFSISAKG-------------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 145 ~~I~l~nls~~y~~-------------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+|+++||+++|+. ..+|+||||+|.+||++||+|+||||||||+++|+|. ..|.+|+|.+.+++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--~~p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--VKATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCcEEEECCEE
Confidence 36999999999962 4689999999999999999999999999999999985 35788999999987
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhccc
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRAT 290 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 290 (548)
+........... .....++++... .......++.+++........ .........++.++|+.+|+.....++++
T Consensus 85 i~~~~~~~~~~~----r~~i~~v~Q~~~-~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 85 LLGMKDDEWRAV----RSDIQMIFQDPL-ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred CCcCCHHHHHHH----hCceEEEecCch-hhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 753322111110 011122222210 011223455555543221110 11112334567899999999756779999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|.+|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999998888654 6799999999999999999999999999
Q ss_pred EEEEcCCHHH
Q psy11936 367 LYYYKGNYSM 376 (548)
Q Consensus 367 i~~~~g~y~~ 376 (548)
+++. |+.++
T Consensus 240 ive~-g~~~~ 248 (331)
T PRK15079 240 AVEL-GTYDE 248 (331)
T ss_pred EEEE-cCHHH
Confidence 9975 55443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=332.58 Aligned_cols=222 Identities=22% Similarity=0.316 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhH
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~ 219 (548)
.|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 5889999999974 4699999999999999999999999999999999985 4688999999988763211 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
.... .....++.+.. ....+..++.+++.... ............++.++|+.+|+.....++++.+|||||||
T Consensus 80 ~~~~----~~~ig~v~q~~--~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (287)
T PRK13641 80 LKKL----RKKVSLVFQFP--EAQLFENTVLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMR 152 (287)
T ss_pred HHHH----HhceEEEEeCh--hhhhccchHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHH
Confidence 0000 00111111110 00112234444442111 11111112234568899999999744678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 231 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH-ASPKE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999998865 47999999999999999999999999999864 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 232 ~ 232 (287)
T PRK13641 232 I 232 (287)
T ss_pred H
Confidence 4
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.93 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK--VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~--~~~~g~I~~~~q~i~~~~~~~ 219 (548)
+|+++||++.|+. ..+|+||||+|.+|+++||||+||||||||+++|+|...+ .+.+|+|.+.++++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 4699999999999999999999999999999999996321 136899999998775433222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGGW 297 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGGq 297 (548)
...... ....++++... .......++.+++.................++.++|+.+||.. ...++++.+|||||
T Consensus 83 ~~~~r~---~~i~~v~Q~~~-~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 83 RRNLVG---AEVAMIFQDPM-TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHhC---CCEEEEecCch-hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 111100 01112222110 0011122333333222111111111223567889999999973 45688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|.+|+|++. |+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CC
Confidence 99999999999999999999999999999999998888764 57999999999999999999999999999986 44
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
.+
T Consensus 238 ~~ 239 (326)
T PRK11022 238 AH 239 (326)
T ss_pred HH
Confidence 33
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=318.62 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=159.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++++|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~--~~~~----- 71 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQKN--IEAL----- 71 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCCcccch--HHHH-----
Confidence 4689999999888999999999999999999999999999999999985 367889999988755321 1000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++. ....+..++.+++..... ..+ ....++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 72 --~~i~~~~q~---~~~~~~~tv~e~l~~~~~---~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 --RRIGALIEA---PGFYPNLTARENLRLLAR---LLG--IRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred --hhEEEecCC---CccCccCcHHHHHHHHHH---hcC--CcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHH
Confidence 111111111 111223455555432111 111 13457888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999988764 5799999999999999999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=349.57 Aligned_cols=218 Identities=28% Similarity=0.388 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+++..+.......+..
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--l~p~sG~I~l~G~~i~~~~~~~~~~--- 77 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--LTPTAGTVLVAGDDVEALSARAASR--- 77 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEEcCcCCHHHHhc---
Confidence 58999999999999999999999999999999999999999999999985 4688999999998764322211111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
..+++.+. ....+..++.+++..... ....+. ......++.++|+.+|+. ...++++.+|||||||||+
T Consensus 78 ----~ig~v~q~---~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~ 149 (402)
T PRK09536 78 ----RVASVPQD---TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVL 149 (402)
T ss_pred ----ceEEEccC---CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHH
Confidence 11122111 112234455554432100 000111 112346788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+++|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||+|++|++|+++.+ |+.+++
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~-G~~~ev 226 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA-GPPADV 226 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 999999999999999999999999999999888765 57999999999999999999999999999864 676654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=332.88 Aligned_cols=217 Identities=21% Similarity=0.335 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC----c
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD----D 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~----~ 216 (548)
.|+++||+++|++ ..+|+||||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.++++.+... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--LQPTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECccccccch
Confidence 3889999999974 4699999999999999999999999999999999985 468889999999876421 1
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
...... ...++++... ...+..++.+++... ....+ ......++.++|+.+||.....++++.+||
T Consensus 80 ~~~~~~-------~ig~v~q~~~--~~l~~~tv~eni~~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 80 LKPLRK-------KVGIVFQFPE--HQLFEETVEKDICFG---PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred HHHHHh-------hEEEEeeCch--hhhhhhhHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 111111 1111111100 011123444443211 11111 112345788899999997556789999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999988764 57999999999999999999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+++
T Consensus 228 -g~~~~~ 233 (290)
T PRK13634 228 -GTPREI 233 (290)
T ss_pred -CCHHHH
Confidence 665553
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.19 Aligned_cols=214 Identities=21% Similarity=0.269 Sum_probs=161.1
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||++.| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~- 77 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--ERPSAGKIWFSGHDITRLKNREVPFL- 77 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCChhHHHHH-
Confidence 37899999999 677899999999999999999999999999999999985 46789999998876632211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....+..+.. ...+..++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 78 ---~~~i~~~~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 78 ---RRQIGMIFQDH---HLLMDRTVYDNVAIPL-IIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred ---HhheEEEecCc---cccccccHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHH
Confidence 00111111111 1122334444442211 1111111122345778999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|++|||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++.-
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 9999999999999999999999999998888765 57999999999999999999999999998643
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=322.78 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=164.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~---- 74 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPMHKRAR---- 74 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccCCHhHHHh----
Confidence 4689999999988999999999999999999999999999999999985 4678899999887653222111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++. .......++.+++..... ...........++.++++.+|+. ...++.+.+|||||+|||+||||
T Consensus 75 --~~i~~~~q~---~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 75 --LGIGYLPQE---ASIFRKLTVEENILAVLE-IRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred --ccEEEecCC---ccccccCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHH
Confidence 001111111 111122345554432111 11111112345677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+.+.+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHh
Confidence 99999999999999999999999999988764 5799999999999999999999999999985 4665544
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=345.89 Aligned_cols=214 Identities=25% Similarity=0.323 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--~~p~~G~I~~~g~~i~~~~~--~~---- 74 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--EDITSGDLFIGEKRMNDVPP--AE---- 74 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCH--hH----
Confidence 48999999999988899999999999999999999999999999999985 46889999998887642111 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. ...+...++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 75 ---~~i~~v~Q~---~~l~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 ---RGVGMVFQS---YALYPHLSVAENMSFGLK-LAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred ---CCEEEEeCC---cccCCCCCHHHHHHhHHh-hcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHH
Confidence 011122211 112223456665532211 11111122345788999999997 4678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~ 220 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLE 220 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999888887654 67999999999999999999999999999876 44443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=345.21 Aligned_cols=216 Identities=25% Similarity=0.326 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--~~p~~G~I~~~g~~i~~~~~--~~---- 85 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--ETPDSGRIMLDGQDITHVPA--EN---- 85 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCCH--HH----
Confidence 58999999999988899999999999999999999999999999999985 46889999999987643211 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...++..++.+++..... ...........++.++++.+|+. ...++++.+|||||||||+|||
T Consensus 86 ---r~ig~vfQ~---~~lfp~ltv~eNi~~~l~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 86 ---RHVNTVFQS---YALFPHMTVFENVAFGLR-MQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred ---CCEEEEecC---cccCCCCCHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHH
Confidence 111222221 112335566666543211 11111122345788999999998 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||..++.+|.+.|+.+ +.|+|+||||..++..+||+|++|++|+++..+.+.+.|
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999988888654 689999999999999999999999999999774443333
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=344.48 Aligned_cols=213 Identities=24% Similarity=0.311 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC--eEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN--IDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~--g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+ |+|.+.+.++..... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~~~G~i~~~g~~~~~~~~--~~-- 78 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--VKAAGLTGRIAIADRDLTHAPP--HK-- 78 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCCEEEEECCEECCCCCH--HH--
Confidence 48899999999988899999999999999999999999999999999985 46778 999999887642111 10
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+...++++. ...+...++.+++..... ...........++.++++.+||.. ..++++.+|||||||||+|
T Consensus 79 -----r~ig~vfQ~---~~l~p~~tv~enl~~~l~-~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 79 -----RGLALLFQN---YALFPHLKVEDNVAFGLR-AQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred -----CCEEEEECC---cccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHH
Confidence 111122211 112234566666643221 111112234567889999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||+.+|+||||||||++||+.++.++.+.|.++ +.|+|+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~-g~~~ 224 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH-GEPQ 224 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 99999999999999999999999999988887653 57999999999999999999999999999976 4444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=318.16 Aligned_cols=210 Identities=25% Similarity=0.333 Sum_probs=158.3
Q ss_pred EEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...........
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~-- 76 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--ELPTSGTIRVNGQDVSDLRGRAIPYL-- 76 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHHHH--
Confidence 468999999964 6899999999999999999999999999999999985 46788999998876643221110000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ......++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 77 --~~~i~~v~q~~---~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 77 --RRKIGVVFQDF---RLLPDRNVYENVAFALE-VTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred --HHheEEEecCc---hhccCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHH
Confidence 01111111111 11222345554432211 111111123456788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998765 47999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=326.79 Aligned_cols=224 Identities=21% Similarity=0.360 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeC---------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK---------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~---------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--EKPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEccccC
Confidence 488999999995 36799999999999999999999999999999999985 4688899999887664322
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....... .....++++... .......++.+++......+..........++.++++.+|+.....++++.+||||
T Consensus 80 ~~~~~~~----~~~i~~v~q~~~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 80 RKQRRAF----RRDVQLVFQDSP-SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHHH----hhceEEEecChh-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence 1110000 001111111110 00112234444443221111111222234578899999999645678899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++.. |
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g 233 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE-C 233 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE-C
Confidence 999999999999999999999999999999998888888764 67999999999999999999999999999864 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 234 ~~~~~ 238 (265)
T TIGR02769 234 DVAQL 238 (265)
T ss_pred CHHHH
Confidence 65544
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=328.18 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=160.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... .
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~-~------ 71 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--VPYQHGSITLDGKPVEGPGA-E------ 71 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCC-c------
Confidence 37899999999888899999999999999999999999999999999985 46788999998876532110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..++.+. .......++.+++.... ............++.++|+.+|+.. ..++++.+|||||+|||+|||
T Consensus 72 -----~~~v~q~---~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 72 -----RGVVFQN---EGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred -----EEEEeCC---CccCCCCcHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHH
Confidence 0111111 01112234444432211 1111111122456889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~ 370 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++..
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999999999999999999999998775 5799999999999999999999998 5998764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=320.28 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=162.6
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||++.|++ +++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++.... ..+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~-~~~~--- 74 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--LRPTSGTAYINGYSIRTDR-KAAR--- 74 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEecccch-HHHh---
Confidence 468999999987 7899999999999999999999999999999999985 4678999999887653211 1110
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++.+.. ......++.+++.... ............++.++++.+|+. ...++++.+|||||+|||+||
T Consensus 75 ----~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 75 ----QSLGYCPQFD---ALFDELTVREHLRFYA-RLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred ----hhEEEecCcC---CccccCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHH
Confidence 1111222111 1112334444443211 111111112345678899999997 456889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
|||+.+|++|||||||++||+.+..++.++|.++. .|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~-~~~~ 217 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI-GSPQ 217 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec-CCHH
Confidence 99999999999999999999999999999998753 6999999999999999999999999999864 5443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=328.89 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--hHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--TAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~~~~~~ 223 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++..... ..+..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~~~- 77 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKPLDYSKRGLLALRQ- 77 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCccEEEECCEEcccccCCHHHHHh-
Confidence 48899999999988899999999999999999999999999999999985 46789999998887632111 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
...++++... ...+..+..+++... +...+.. ....++.++++.+|+.. ..++++.+|||||+|||
T Consensus 78 ------~i~~v~q~~~--~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl 145 (271)
T PRK13638 78 ------QVATVFQDPE--QQIFYTDIDSDIAFS---LRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRV 145 (271)
T ss_pred ------heEEEeeChh--hccccccHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHH
Confidence 1111111100 001111222332211 1111111 22345778999999974 56889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+++
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 223 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH-GAPGEV 223 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999998775 57999999999999999999999999999865 555443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=327.93 Aligned_cols=222 Identities=17% Similarity=0.253 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCC---------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAKG---------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~---------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||+++|++ .++|+|+||+|++|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCc
Confidence 5899999999962 4699999999999999999999999999999999985 4678899999887664211
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...... ...++++.... ......++.+++..................+.++|+.+|+.....++++.+||||
T Consensus 82 ~~~~~~-------~i~~v~q~~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 82 YSYRSQ-------RIRMIFQDPST-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred hhhHhc-------cEEEEecCchh-hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 111000 01111111000 0001112222221111000001111234567889999999645668889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cC
Confidence 999999999999999999999999999999999999988764 5799999999999999999999999999985 56
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 766553
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=325.64 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~--- 76 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--LTPQSGTVFLGDKPISMLSSRQLAR--- 76 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCCcEEEECCEEhHHCCHHHHhh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999887653211111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH-HHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIY-EELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++.. ......++.+++.... ......+ ......++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 77 ----~i~~~~q~~---~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 77 ----RLALLPQHH---LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAF 148 (255)
T ss_pred ----heEEecccC---CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHH
Confidence 111222111 1112234444432110 0000011 1123456788999999964 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHh
Confidence 999999999999999999999999999999998764 5799999999999999999999999999985 4666554
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=322.92 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-----CeEEEEeceeeccCc--hh
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-----NIDILYCEQEVVADD--LT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-----~g~I~~~~q~i~~~~--~~ 218 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. .|. +|+|.+.++++.... ..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN--DLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC--CCCcCCCCceEEEECCEEccccccchH
Confidence 378999999999888999999999999999999999999999999999853 444 899999888664211 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCCCChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGADSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+. ....++++.. . .+..++.+++.... .+.. ........++..+++.+|+.. ...++++.+||
T Consensus 79 ~~~-------~~i~~v~q~~---~-~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 146 (247)
T TIGR00972 79 ELR-------RRVGMVFQKP---N-PFPMSIYDNIAYGP-RLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLS 146 (247)
T ss_pred HHH-------hheEEEecCc---c-cCCCCHHHHHHhHH-HhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCC
Confidence 111 1111111111 1 11244444443211 1111 011123456788999999972 35688999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|.++. .|||+||||++++..+||+|++|++|+++.. |
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~ 225 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY-G 225 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe-C
Confidence 999999999999999999999999999999999999999998753 7999999999999999999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 226 ~~~~~ 230 (247)
T TIGR00972 226 PTEQI 230 (247)
T ss_pred CHHHH
Confidence 55544
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=318.22 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++..........
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--DNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEhhhcCHhHHHH
Confidence 789999999964 4699999999999999999999999999999999985 4678999999887664322111100
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.. .....++.+.. ......++.+++.... .+..........++.++++.+|+.. ..++++.+|||||+|||+
T Consensus 80 ~~---~~~i~~v~q~~---~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 80 LR---NKKLGFIYQFH---HLLPDFTALENVAMPL-LIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVA 151 (221)
T ss_pred HH---HhcEEEEeccc---ccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHH
Confidence 00 00111122111 1112345555443211 1111111123456788999999974 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++.. ||+|++|++|+++
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999999998754 5799999999999965 8999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=325.05 Aligned_cols=225 Identities=21% Similarity=0.300 Sum_probs=163.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee-----eccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE-----VVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~-----i~~~~~~~~ 220 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.+ +........
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCccccccccccCCHHHH
Confidence 58999999999888899999999999999999999999999999999985 46788999998876 432111111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.... .....++++... .......+..+++......+..........++.++++.+|+.....++.+.+|||||+||
T Consensus 84 ~~~~---~~~i~~v~q~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 84 RRLL---RTEWGFVHQHPR-DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHh---hcceEEEeeCcc-cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 0000 000111111110 000111222233221110010000112345678899999997446789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.+..++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~ 238 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES-GLTDQ 238 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999999999988653 67999999999999999999999999999864 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 239 ~ 239 (258)
T PRK11701 239 V 239 (258)
T ss_pred H
Confidence 3
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=328.17 Aligned_cols=219 Identities=23% Similarity=0.330 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
.|+++||+++|++ .++|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccC
Confidence 4889999999975 3699999999999999999999999999999999985 4678999999887664211
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
...+.. ...++.+... ...+..++.+++.... ............++.++|+.+|+.....++++.+||||
T Consensus 80 ~~~~~~-------~i~~~~q~~~--~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (280)
T PRK13649 80 IKQIRK-------KVGLVFQFPE--SQLFEETVLKDVAFGP-QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG 149 (280)
T ss_pred HHHHHh-------heEEEeeChh--hhhccccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 111111 1111111110 0112234444442111 11111111234467788999999754568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS-GK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe-CC
Confidence 999999999999999999999999999999999999998765 57999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=322.48 Aligned_cols=218 Identities=24% Similarity=0.355 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~---~- 76 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--VPRDAGNIIIDDEDISLLPLHAR---A- 76 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---H-
Confidence 58999999999988999999999999999999999999999999999985 46788999998876643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++++.. ......++.+++.... .+. .........++.++++.+|+.. ..++++.+|||||+|||+||
T Consensus 77 --~~~i~~~~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 77 --RRGIGYLPQEA---SIFRRLSVYDNLMAVL-QIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred --HhCeEEeccCC---cccccCcHHHHHhhhh-hcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHH
Confidence 00111121111 1112234444443211 111 0111223456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++. .|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 224 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEI 224 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHH
Confidence 9999999999999999999999999888877653 6799999999999999999999999999986 4776655
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=323.48 Aligned_cols=220 Identities=21% Similarity=0.290 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+.++.......+..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 589999999999888999999999999999999999999999999999963221 46899999988764222111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
...++++.. ...+..++.+++.... ..... ........+.++++.+|+.. ...++++.+|||||
T Consensus 83 -------~i~~v~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 83 -------RVQMVFQIP---NPIPNLSIFENVALGL-KLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred -------cEEEEeccC---ccCCCCcHHHHHHHHH-HhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 111122111 1123345555543211 11111 01122456788999999853 34688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 230 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW-GPTR 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE-CCHH
Confidence 99999999999999999999999999999999999999875 47999999999999999999999999999864 6655
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 231 ~~ 232 (250)
T PRK14247 231 EV 232 (250)
T ss_pred HH
Confidence 54
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=321.95 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||++.|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+ .|.+|+|.+.++++...+...+..
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~-- 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK-- 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh--
Confidence 58899999999988899999999999999999999999999999999995321 367899999988764322111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqkq 299 (548)
...++++.. ..+..++.+++.... .+... .......++..+++.+|+.. ...++.+.+|||||+|
T Consensus 80 -----~i~~~~q~~----~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 149 (246)
T PRK14269 80 -----NVGMVFQQP----NVFVKSIYENISYAP-KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149 (246)
T ss_pred -----hEEEEecCC----ccccccHHHHhhhHH-hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence 111222111 112234444442111 11110 01123446778999999953 3457888999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..+...
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999764 679999999999999999999999999999764433
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=335.64 Aligned_cols=226 Identities=19% Similarity=0.208 Sum_probs=164.5
Q ss_pred cEEEEeEEEEe----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISA----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK--VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~--~~~~g~I~~~~q~i~~~~~~~ 219 (548)
+|+++||+++| +...+|+||||+|.+|+++||+|+||||||||+++|+|...+ .+.+|+|.|.++++.......
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999 345799999999999999999999999999999999996321 257899999998764332221
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHhCCCCh--hhhhcccCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-----DSAEPRARRILAGLGFSR--AMQDRATKN 292 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~~~L~~lgl~~--~~~~~~~~~ 292 (548)
...... ....++++.... ......++.+++..........+. .....++.++|+.+||.. ...++++.+
T Consensus 83 ~~~~~~---~~i~~v~Q~~~~-~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~ 158 (330)
T PRK15093 83 RRKLVG---HNVSMIFQEPQS-CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE 158 (330)
T ss_pred HHHHhC---CCEEEEecCcch-hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 111000 011122221100 011122333333221110000010 123457889999999974 346889999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||+|++|++|+|+
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999988764 679999999999999999999999999998
Q ss_pred EEcCCHHH
Q psy11936 369 YYKGNYSM 376 (548)
Q Consensus 369 ~~~g~y~~ 376 (548)
+. |+.++
T Consensus 239 e~-g~~~~ 245 (330)
T PRK15093 239 ET-APSKE 245 (330)
T ss_pred EE-CCHHH
Confidence 76 55433
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=334.80 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----
Q psy11936 146 DIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---- 216 (548)
Q Consensus 146 ~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---- 216 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+..+...-
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--IKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCEEccccccccc
Confidence 5999999999974 3599999999999999999999999999999999985 4688999999887653210
Q ss_pred ---------hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh
Q psy11936 217 ---------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD 287 (548)
Q Consensus 217 ---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~ 287 (548)
...... ......++.+.. ....+..++.+++..... ...........++.++++.+|+.....+
T Consensus 99 ~~~~~~~~~~~~~~~----~~~~ig~v~Q~~--~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 99 LITNPYSKKIKNFKE----LRRRVSMVFQFP--EYQLFKDTIEKDIMFGPV-ALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccchHHH----HHhcEEEEEECc--hhccccchHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 000000 001111111111 001222344444321100 0011112234567889999999745678
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+.+.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998754 57999999999999999999999999
Q ss_pred CEEEEEcCCHHHH
Q psy11936 365 QKLYYYKGNYSMF 377 (548)
Q Consensus 365 G~i~~~~g~y~~f 377 (548)
|+++.. |+.+++
T Consensus 252 G~i~~~-g~~~~~ 263 (320)
T PRK13631 252 GKILKT-GTPYEI 263 (320)
T ss_pred CEEEEe-CCHHHH
Confidence 999875 555544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=318.06 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++.+...+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--DDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeeEEECCEEcccCCHHHHH
Confidence 5899999999975 3599999999999999999999999999999999985 467899999988766432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
... .....++++.. ......++.+++.... .+..........++.++|+.+|+. ...++++.+|||||+|||
T Consensus 84 ~~~---~~~i~~~~q~~---~l~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 84 KLR---AKHVGFVFQSF---MLIPTLNALENVELPA-LLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRV 155 (228)
T ss_pred HHH---hheEEEEEccc---ccCCCcCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHH
Confidence 000 00111111111 1112234445443211 111111122345788999999997 456889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||++++|++|+++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999999998654 5799999999999865 99999999999864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=326.53 Aligned_cols=201 Identities=25% Similarity=0.316 Sum_probs=158.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+. .+.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~-----~~~--- 80 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--ETPSAGELLAGTAPLA-----EAR--- 80 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEHH-----Hhh---
Confidence 459999999999988999999999999999999999999999999999985 4678899987665431 000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++.+.. ......++.+++.... ......++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 81 ----~~i~~v~q~~---~l~~~~tv~enl~~~~-------~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 81 ----EDTRLMFQDA---RLLPWKKVIDNVGLGL-------KGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALA 145 (257)
T ss_pred ----CceEEEecCc---cCCCCCcHHHHHHhcc-------cchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHH
Confidence 0011111110 1111234444432110 0113456788999999974 56889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999888654 57999999999999999999999999999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=320.17 Aligned_cols=215 Identities=23% Similarity=0.342 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~i~~~~~~~~----- 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDLRRAPRAAL----- 73 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcccCChhhh-----
Confidence 37899999999988999999999999999999999999999999999985 46788999998876532111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .............+.++++.+|+.. ..++.+.+|||||+|||+|||
T Consensus 74 ---~~i~~~~q~---~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ---ARLGVVFQQ---PTLDLDLSVRQNLRYHA-ALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIAR 145 (236)
T ss_pred ---hhEEEeCCC---CCCcccCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHH
Confidence 011111111 01112334444432211 1111111123456788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|+++.. |+.+.+
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~-~~~~~~ 219 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD-GAAAEL 219 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe-CCHHHH
Confidence 999999999999999999999999999988764 5799999999999975 999999999999864 665544
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=317.03 Aligned_cols=214 Identities=22% Similarity=0.271 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|++.++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~----- 73 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGSIRFDGRDITGLPPHERA----- 73 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCCCCHHHHH-----
Confidence 4689999999988899999999999999999999999999999999985 467889999988766432211100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++.. ..+...++.+++..... .........++..+++.+ ++. ...++++.+|||||+|||+|||
T Consensus 74 -~~~i~~~~q~~---~~~~~~t~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~lar 145 (222)
T cd03224 74 -RAGIGYVPEGR---RIFPELTVEENLLLGAY---ARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIAR 145 (222)
T ss_pred -hcCeEEecccc---ccCCCCcHHHHHHHHhh---hcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHH
Confidence 00112222211 11223355554432111 111122344567788888 465 4568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 218 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE-GTAAE 218 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe-CCHHH
Confidence 999999999999999999999999999999765 47999999999999999999999999999854 55544
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=333.12 Aligned_cols=208 Identities=25% Similarity=0.404 Sum_probs=161.1
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.... ..+. ...++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~-~~~~-------~~i~~ 70 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--LRPTSGTARVAGYDVVREP-RKVR-------RSIGI 70 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEcccCH-HHHH-------hhcEE
Confidence 468888899999999999999999999999999999999985 4688999999987764211 1111 11122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+++. .......++.+++... ..+..........++.++|+.+|+.. ..++++.+|||||||||+||+||+.+|++
T Consensus 71 ~~q~---~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 71 VPQY---ASVDEDLTGRENLEMM-GRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred ecCC---CCCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2221 1122334555555321 11111111223456889999999974 57899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~l 211 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE-GTPEEL 211 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 9999999999999999999999875 47999999999999999999999999999864 676654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=323.40 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc--------hh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--------LT 218 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~--------~~ 218 (548)
|+++||++.|++..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+.... ..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--EPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccccccc
Confidence 4689999999988999999999999999999999999999999999985 4678999999887663211 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
... . ........++.+. ....+..++.+++..................+.++++.+|+.. ..++.+.+|||||+
T Consensus 79 ~~~-~-~~~~~~i~~v~q~---~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 79 EKH-L-RQMRNKIGMVFQS---FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQ 152 (252)
T ss_pred hhH-H-HHHhhCeEEEecC---cccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHH
Confidence 000 0 0000011111111 1112234555544321110011111123456788999999974 67889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 231 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ-GKP 231 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCH
Confidence 9999999999999999999999999999999999988754 57999999999999999999999999999854 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+.+
T Consensus 232 ~~~ 234 (252)
T TIGR03005 232 DEI 234 (252)
T ss_pred HHH
Confidence 655
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=328.43 Aligned_cols=227 Identities=22% Similarity=0.324 Sum_probs=170.8
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchh
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLT 218 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~ 218 (548)
|+++||+.+|.. ..+++||||+|.+||++||||.||||||||.+.|+|+ ++.+ .+|+|.|.++++...+..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l-lp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL-LPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc-cCCCCCeEeeeEEEECCcccccCCHH
Confidence 789999999953 3689999999999999999999999999999999985 3322 357899999887554432
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChh--hhhcccCCCCH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRA--MQDRATKNFSG 295 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSG 295 (548)
....+.+ ....+++|... ..+.+..+...++.+.+...... ...++..++.++|+.+||++. .++.+|++|||
T Consensus 81 ~~~~iRG---~~I~mIfQ~p~-~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRG---KEIAMIFQDPM-TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred HHHhhcC---ceEEEEEcCch-hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 2111111 11122222211 11122334444444433321111 223456789999999999854 78999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+||.||+.+|+|||.||||++||...+..+.++|++ .+.|+|+||||+..+..+||||+||..|+|++++
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 999999999999999999999999999999999888888865 4689999999999999999999999999999986
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
...+.|.
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 5555553
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=320.94 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~~~--- 76 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--TRPDEGSVLFGGTDLTGLPEHQIAR--- 76 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEECCeecCCCCHHHHHh---
Confidence 48899999999888899999999999999999999999999999999985 3678899999887653222111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-----c---CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----I---GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....+.++. .......++.+++..... ... + .......++.++++.+|+.. ..++++.+|||||
T Consensus 77 ---~~i~~~~q~---~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge 148 (242)
T TIGR03411 77 ---AGIGRKFQK---PTVFENLTVFENLELALP-RDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQ 148 (242)
T ss_pred ---cCeeEeccc---cccCCCCCHHHHHHHhhh-cccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHH
Confidence 011122211 111223355554432111 000 0 00123456788999999974 5688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~-~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE-GSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee-CCHH
Confidence 99999999999999999999999999999999999999876 36999999999999999999999999999854 6766
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 65
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=321.26 Aligned_cols=223 Identities=20% Similarity=0.282 Sum_probs=165.4
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--C-CCCCeEEEEeceeeccCchhHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--K-VPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~-~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+..|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|..- + .|.+|+|.+.++++.......
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~- 82 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV- 82 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH-
Confidence 346999999999988889999999999999999999999999999999999531 1 146899999888764211100
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
... .....++.+.. ..+..++.+++.... ....... .....++..+++.+|+.. ...++++.+||||
T Consensus 83 ~~~----~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 83 VEL----RRRVGMVFQKP----NPFPKSIFENVAYGL-RVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred HHH----hhcEEEEecCC----CCCcCcHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 000 00111111111 112234445443211 1111111 112456788899999853 2457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~ 232 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV-GPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999876 36999999999999999999999999999865 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14242 233 EQI 235 (253)
T ss_pred HHH
Confidence 544
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=325.49 Aligned_cols=219 Identities=24% Similarity=0.396 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+.......+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~- 79 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--LKPTSGSVLIRGEPITKENIREVRKF- 79 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHHhh-
Confidence 488999999995 45799999999999999999999999999999999985 46889999998887643221111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++.+... ...+..++.+++.... ............++.++++.+|+. ...++.+.+|||||+|||+||
T Consensus 80 ------i~~v~q~~~--~~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 80 ------VGLVFQNPD--DQIFSPTVEQDIAFGP-INLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred ------eEEEecCcc--cccccccHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 111111100 0112234444442111 000111112335678899999997 467899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~-g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY-GTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE-CCHHHHh
Confidence 9999999999999999999999999999988754 57999999999999999999999999999864 7766653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=302.50 Aligned_cols=229 Identities=25% Similarity=0.321 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hh--HH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LT--AV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~--~~ 220 (548)
.|+++||.++||...+|++|||+-..|+++.|||.||||||||||||. .+..|..|.|...++++.... .. ..
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN--~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH--hhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 488999999999999999999999999999999999999999999998 356899999999998874211 00 00
Q ss_pred -HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 221 -ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
...+.....+.++.++. .+....+++.+++.+.--..-.....++.++++.+|..+|+.+ ..+.+|..|||||+|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~---FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LSGGQQQ 159 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQH---FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE-KADAYPAHLSGGQQQ 159 (256)
T ss_pred CHHHHHHHHHHhhHhhhh---cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-hhhcCccccCchHHH
Confidence 00000111111222221 1122234444444332111222334456778999999999985 567999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|++|||||+.+|+++|+|||||+|||+-+-.+...++++ +.|+++|||.+.|+..++++|++|++|.|-+.+.+-..
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 999999999999999999999999999888877777654 78999999999999999999999999999876555555
Q ss_pred HHHH
Q psy11936 377 FKKM 380 (548)
Q Consensus 377 f~~~ 380 (548)
|-+.
T Consensus 240 f~nP 243 (256)
T COG4598 240 FGNP 243 (256)
T ss_pred hcCC
Confidence 5443
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=304.53 Aligned_cols=174 Identities=34% Similarity=0.536 Sum_probs=146.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
+++||+++|++..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~------ 72 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSPKELA------ 72 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCcCCHHHHH------
Confidence 368999999888899999999999999999999999999999999985 467889999988766422211100
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....+++ .+++.+|+.. ..++.+.+|||||+||++|||||
T Consensus 73 -~~i~~~~--------------------------------------q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral 112 (180)
T cd03214 73 -RKIAYVP--------------------------------------QALELLGLAH-LADRPFNELSGGERQRVLLARAL 112 (180)
T ss_pred -HHHhHHH--------------------------------------HHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHH
Confidence 0000000 0677788874 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998765 5699999999999999999999999999874
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=323.25 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~p~~G~i~~~g~~~~~~~~~~~~---- 75 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--LSPDSGEVRLNGRPLADWSPAELA---- 75 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcccCCHHHhh----
Confidence 48899999999988899999999999999999999999999999999985 467889999988765322111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++..... ...........++.++|+.+||. ...++.+.+|||||+|||+|||
T Consensus 76 ---~~i~~~~q~---~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 76 ---RRRAVLPQH---SSLSFPFTVEEVVAMGRA-PHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred ---hheEEEccC---CcCCCCCCHHHHHHhhhc-ccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHH
Confidence 011122211 111123345444422110 00001112345678899999997 4578999999999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALY------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+ .+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHH
Confidence 999 599999999999999999999988888754 4799999999999999999999999999985 46665
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 54
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=326.67 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch--hHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL--TAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~--~~~~~ 222 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++..... ..+..
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--LKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCEECCCCcchHHHHHh
Confidence 589999999996 57899999999999999999999999999999999985 46888999999887632111 11111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++... ...+..++.+++...... ..........++..+++.+|+. ...++++.+|||||+||++
T Consensus 83 -------~ig~v~q~~~--~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 -------SVGMVFQDPD--NQLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred -------hEEEEecCcc--hhhccccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHH
Confidence 1111111110 011223444444221100 0111112345678899999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++. .|+++.+.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999888888654 5799999999999999999999999999985 47776653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=319.56 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=153.9
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++. ...
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~-----~~~------- 67 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--LKPTSGSIRVFGKPLE-----KER------- 67 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCccHH-----HHH-------
Confidence 67999999888899999999999999999999999999999999985 4678899998876542 000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-c--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-I--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+...+. ..+..++.+++......... . .......++..+++.+|+. ...++++.+|||||||||+|||
T Consensus 68 ~~i~~v~q~~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 68 KRIGYVPQRRSID-RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred hheEEeccccccc-cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHH
Confidence 0111222111100 01123444444221100000 0 0011345678899999997 4678899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|.+
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 999999999999999999999999999998875 47999999999999999999999988643
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=317.76 Aligned_cols=214 Identities=22% Similarity=0.327 Sum_probs=160.6
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++.........
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--DTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCHHHHH
Confidence 5899999999964 4799999999999999999999999999999999985 467899999998876432211110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.... ....++.+.. ..+...++.+++.... .+..........++.++++.+|+.. ..++.+.+|||||||||
T Consensus 83 ~~~~---~~i~~v~q~~---~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 83 ELRN---QKLGFIYQFH---HLLPDFTALENVAMPL-LIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRV 154 (233)
T ss_pred HHHh---ccEEEEecCc---ccCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 0000 0111111111 1122335555543211 1111111223456889999999974 56888999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ +++++|++|+++..
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~ 226 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998764 57999999999999874 69999999999753
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=320.38 Aligned_cols=225 Identities=21% Similarity=0.305 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee-----eccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE-----VVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~-----i~~~~~~~~ 220 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.+ +........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEecccccccccccCCHHHH
Confidence 58999999999888899999999999999999999999999999999985 46788999988754 321111100
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
..... ....++.+.... ......+..+++......+...........+.++++.+|+.....++.+..|||||+||
T Consensus 81 ~~~~~---~~i~~~~q~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qr 156 (253)
T TIGR02323 81 RRLMR---TEWGFVHQNPRD-GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQR 156 (253)
T ss_pred HHhhh---cceEEEEeCccc-ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHH
Confidence 00000 001111111000 00111122222221110010000012345778899999997446788999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|++|||||||+|||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+.
T Consensus 157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~-~~~~~ 235 (253)
T TIGR02323 157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES-GLTDQ 235 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999888653 57999999999999999999999999999865 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 236 ~ 236 (253)
T TIGR02323 236 V 236 (253)
T ss_pred H
Confidence 4
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=334.02 Aligned_cols=225 Identities=20% Similarity=0.309 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i~~~~~~ 218 (548)
+|+++||++.|+ ...+|+||||+|.+|+++||+|+||||||||+++|+|.. .|. +|+|.|.++++......
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~--~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL--AANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC--CCCCCCCeEEEECCEECCcCCHH
Confidence 689999999994 246999999999999999999999999999999999853 343 89999999887543322
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGG 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGG 296 (548)
.+..... ....++++... .......++.+++.................++.++|+.+||.. ...++++.+||||
T Consensus 90 ~~~~~r~---~~i~~v~Q~~~-~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRA---EQISMIFQDPM-TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHhc---CCEEEEEcCch-hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 2111100 01112222110 0111223334433322111111111223457888999999974 2357899999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|++|+|++. |
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-G 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 999999999999999999999999999999999988887654 67999999999999999999999999999976 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 245 ~~~~i 249 (330)
T PRK09473 245 NARDV 249 (330)
T ss_pred CHHHH
Confidence 55443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=324.67 Aligned_cols=217 Identities=18% Similarity=0.308 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHHh
Confidence 5899999999964 4599999999999999999999999999999999985 4688999999988764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++.+.. ....+..++.+++.... ............++.++|+.+|+. ...++++.+|||||+|||+
T Consensus 82 -------~i~~v~q~~--~~~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 82 -------KIGMVFQNP--DNQFVGATVEDDVAFGL-ENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVA 150 (279)
T ss_pred -------hceEEEcCh--HHhcccccHHHHHHhhH-HhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 111221111 01122334444443211 111111122345788999999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+.+
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~-g~~~~~ 227 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVEST-STPREL 227 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999999888754 579999999999994 7999999999999864 555543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=327.56 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-----
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD----- 215 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~----- 215 (548)
.|+++||+++|+++ .+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--IISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEccccccccc
Confidence 58999999999764 499999999999999999999999999999999985 467889999888765310
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
....+... ..++.+... ...+..++.+++.... ............++.++++.+++.....++++.+|||
T Consensus 84 ~~~~~~~~-------i~~v~q~~~--~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKE-------IGLVFQFPE--YQLFQETIEKDIAFGP-VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSG 153 (289)
T ss_pred cHHHHhcc-------EEEEEeCcc--hhhhhhHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCH
Confidence 00111100 111111100 0011123333332110 0000111112345778899999964567899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~- 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI- 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-
Confidence 9999999999999999999999999999999999999888754 57999999999999999999999999999876
Q ss_pred CCHHH
Q psy11936 372 GNYSM 376 (548)
Q Consensus 372 g~y~~ 376 (548)
|+.++
T Consensus 233 g~~~~ 237 (289)
T PRK13645 233 GSPFE 237 (289)
T ss_pred CCHHH
Confidence 44444
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=320.47 Aligned_cols=221 Identities=18% Similarity=0.281 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.++.+...... ...
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD-ILE 85 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc-HHH
Confidence 589999999999888999999999999999999999999999999999863221 3589999988765321110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... .... .......++..+++.+++. ....++++.+||||||
T Consensus 86 ~----~~~i~~v~q~~----~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 86 L----RRKIGMVFQTP----NPFLMSIYDNISYGPK-IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred H----hhceEEEeecc----ccccCcHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence 0 00111121111 1122445554432111 1110 0112345677889998874 2346888999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 235 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE-SSTDE 235 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999876 37999999999999999999999999999865 55554
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 236 ~ 236 (254)
T PRK14273 236 L 236 (254)
T ss_pred H
Confidence 3
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=319.68 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|.....| .+|+|.+.++++..... ..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 5899999999998889999999999999999999999999999999998532234 48999998876632110 011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++++.. ..+..++.+++.... ........ ....++..+++.+++.. ...++.+.+||||
T Consensus 85 ~~-------~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14239 85 RK-------EIGMVFQQP----NPFPMSIYENVVYGL-RLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGG 152 (252)
T ss_pred hh-------cEEEEecCC----ccCcCcHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHH
Confidence 10 111122111 112234555443211 11111111 12356777899998742 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 231 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY-NDT 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999875 47999999999999999999999999999876 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 232 ~~ 233 (252)
T PRK14239 232 KQ 233 (252)
T ss_pred HH
Confidence 43
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=325.21 Aligned_cols=218 Identities=22% Similarity=0.327 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.......+.
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~---- 84 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--QPPSEGEILLDAQPLESWSSKAFA---- 84 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEehhhCCHHHHh----
Confidence 58999999999988999999999999999999999999999999999985 467889999988765322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+. ....+..++.+++......... .+ ......++..+|+.+|+. ...++++.+|||||+|||+
T Consensus 85 ---~~i~~v~q~---~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 85 ---RKVAYLPQQ---LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred ---hheEEeccC---CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHH
Confidence 011111111 0112233444444211000000 00 112345678899999996 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~-~~~~~~ 235 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ-GTPAEL 235 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHHHh
Confidence 999999999999999999999999999888888654 57999999999999999999999999999754 554443
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=316.47 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
++++++|+++||+-.+++||||++.+|+++|||||||||||||+++|+| +..|++|+|.+.++++.......+..
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG--~~~P~~G~v~~~G~~it~l~p~~iar--- 78 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG--FYKPSSGTVIFRGRDITGLPPHRIAR--- 78 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc--cccCCCceEEECCcccCCCCHHHHHh---
Confidence 5789999999999999999999999999999999999999999999998 46899999999999887654332111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-H--H-HhcC-------CCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-E--L-KAIG-------ADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~--l-~~~~-------~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
.++. ...+....+..+++.+++..... . + ..++ .....+++.++|+.+||.+ ..+.+..+||
T Consensus 79 -----~Gi~-RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~Ls 151 (250)
T COG0411 79 -----LGIA-RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLS 151 (250)
T ss_pred -----ccce-eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCC
Confidence 1110 01111223446667666543211 0 0 0111 1234567889999999985 6799999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|||+|+.|||||+.+|+|||||||.+||.+.....+.++|+++ +.||++|.||+.++..+||||++|+.|+++.
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA- 230 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA- 230 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-
Confidence 99999999999999999999999999999999988888888765 4799999999999999999999999999986
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
.|++++-
T Consensus 231 eG~P~eV 237 (250)
T COG0411 231 EGTPEEV 237 (250)
T ss_pred cCCHHHH
Confidence 5777654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.91 Aligned_cols=219 Identities=18% Similarity=0.279 Sum_probs=164.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC-CCCC--CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD-LKVP--PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~-~~~~--~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++|+++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.. ...+ .+|+|.+.++.+..... ...
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 689999999999888999999999999999999999999999999999852 1222 47999999887642111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
. ....++++.. ..+..++.+++..... ...... ......+.++++.+|+.. ...++++.+||||
T Consensus 83 ~-------~~i~~v~q~~----~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 83 R-------KNVGMVFQRP----NPFPKSIFENVAYGLR-VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred h-------hheEEEecCC----ccCcccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 1 0111222111 1112244444422111 111100 113356778899999853 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~-~~~ 229 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY-DDT 229 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE-CCH
Confidence 999999999999999999999999999999999999999875 47999999999999999999999999999865 565
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 230 ~~~ 232 (250)
T PRK14245 230 KKI 232 (250)
T ss_pred HHH
Confidence 554
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=342.84 Aligned_cols=216 Identities=23% Similarity=0.298 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+.... ...
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--~~p~~G~I~i~g~~i~~~~--~~~---- 90 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--EQPTAGQIMLDGVDLSHVP--PYQ---- 90 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECCCCC--HHH----
Confidence 59999999999988899999999999999999999999999999999985 4788999999888764211 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...++..++.+++..... ...........++.++++.+|+.. +.++++.+|||||||||+|||
T Consensus 91 ---r~ig~vfQ~---~~lfp~ltv~eNi~~~l~-~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 91 ---RPINMMFQS---YALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred ---CCEEEEeCC---CccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 111222221 122335567666643211 111112234567889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||..++.++.+.|. +.+.|+|+||||++++..+||+|++|++|+++.++.+.+.|
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999988775554 45789999999999999999999999999999875443333
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=321.67 Aligned_cols=220 Identities=20% Similarity=0.311 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++++.... ...+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 589999999999889999999999999999999999999999999999963222 35899999887663211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFS---RAMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGG 296 (548)
.. ...++.+. .......++.+++..... .... .......++.++|+.+|+. ....++++.+||||
T Consensus 84 ~~-------~i~~~~q~---~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 84 RR-------TIGMVFQR---PNPFPTMSIRDNVVAGLK-LNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred hc-------ceEEEccc---cccCCCCcHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 00 11111111 111223455555432211 1110 1112345677889999984 23568889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe------CCEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD------QQKLY 368 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~------~G~i~ 368 (548)
|+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999999999999875 4799999999999999999999997 79998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 233 ~~-~~~~~~ 240 (258)
T PRK14241 233 EI-DDTEKI 240 (258)
T ss_pred ec-CCHHHH
Confidence 65 565544
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=322.06 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCc--hhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADD--LTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~--~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|++++|+|||||||||||++|+|...+. +.+|+|.+.+..+.... ......
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 589999999999889999999999999999999999999999999999863222 23589999887663211 000000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---H-H-hcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---L-K-AIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l-~-~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. .....++++.. ...+..++.+++...... + . ..+ ......++.++++.+|+. ...++.+.+|||
T Consensus 84 ~----~~~i~~~~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~ 155 (262)
T PRK09984 84 S----RANTGYIFQQF---NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSG 155 (262)
T ss_pred H----HhheEEEcccc---ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCH
Confidence 0 01111222211 112233444444211100 0 0 000 112345788999999997 467899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++. .
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~-~ 234 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY-D 234 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-e
Confidence 9999999999999999999999999999999999999999865 4799999999999999999999999999975 5
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 777765
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=319.80 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccC--chhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVAD--DLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~--~~~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+. +.+|+|.+.++++... ....+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 589999999999888999999999999999999999999999999999853221 3589999988876311 11111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
. ....++.+.. ......++.+++.... ...... ......++.++++.+|+.. ...++++.+|||
T Consensus 84 ~-------~~i~~~~q~~---~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 84 R-------REVGMVFQYP---NPFPHLTIYDNVAIGV-KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred h-------hceeEEecCC---ccCCCCcHHHHHHHHH-HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 0 0111222111 1122335555543211 111110 1112346778899999852 346788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~ 231 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV-GP 231 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe-CC
Confidence 9999999999999999999999999999999999999999876 37999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 232 ~~~~ 235 (253)
T PRK14267 232 TRKV 235 (253)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=319.22 Aligned_cols=217 Identities=28% Similarity=0.355 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~---- 75 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRARAR---- 75 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCCEEEECCEEcccCCHHHHhh----
Confidence 6799999999988999999999999999999999999999999999985 4678899999887664322111110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-c--CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-I--GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+.. ...+..++.+++......... . .......++.++++.+|+. ...++++.+|||||+|||+|
T Consensus 76 ---~i~~~~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 76 ---RVALVEQDS---DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ---heEEecccC---ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 111222111 112233455544321100000 1 1112334678899999996 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA-GPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe-cCHHHh
Confidence 99999999999999999999999999999998875 57999999999999999999999999999864 665543
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=321.66 Aligned_cols=221 Identities=19% Similarity=0.285 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--C-CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--K-VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~-~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|... + .|.+|+|.+.++++....... ..
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV-VN 99 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH-HH
Confidence 5899999999998899999999999999999999999999999999999531 1 157899999888764211100 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... ...... ......+.+++..+++.. ...++++.+|||||+
T Consensus 100 ~----~~~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 100 L----RREIGMVFQKP----NPFPKSIYNNITHALK-YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred H----hccEEEEecCC----ccCcccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 0 00111111110 1112244444332111 100000 112345677888888842 346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~ 249 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY-DQTEQ 249 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999876 47999999999999999999999999999876 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 250 ~ 250 (268)
T PRK14248 250 I 250 (268)
T ss_pred H
Confidence 3
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=321.24 Aligned_cols=220 Identities=19% Similarity=0.291 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.++.+........ .
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~-~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV-E 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH-H
Confidence 59999999999988899999999999999999999999999999999986321 1468999998876532111000 0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqkq 299 (548)
. .....++.+.. ..+..++.+++.... ............++.++++.+|+. ....++++.+|||||+|
T Consensus 91 -~---~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 91 -L---RKNVGMVFQKP----NPFPMSIYDNVAYGP-RIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred -H---hhhEEEEecCC----ccCcccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHH
Confidence 0 00111111111 112234555443211 111111111234577899999884 23467889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.. |..++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 239 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF-GQTRQ 239 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999999875 47999999999999999999999999999865 55444
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=317.44 Aligned_cols=218 Identities=22% Similarity=0.350 Sum_probs=162.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.+.++.... ...+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 4889999999998889999999999999999999999999999999999532223 5899999888764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++.... ...... ......++.++++.+++.. ...++++.+||||
T Consensus 83 ~~-------~i~~~~q~~----~~~~~t~~~ni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14240 83 RK-------RVGMVFQQP----NPFPMSIYDNVAYGP-RTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG 150 (250)
T ss_pred hc-------cEEEEecCC----ccCcccHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence 10 111111111 112234444443211 111100 0123456778888888742 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~-~~~ 229 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF-GDT 229 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe-CCH
Confidence 999999999999999999999999999999999999999876 47999999999999999999999999999876 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 230 ~~ 231 (250)
T PRK14240 230 VD 231 (250)
T ss_pred HH
Confidence 43
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=314.18 Aligned_cols=215 Identities=19% Similarity=0.238 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+.....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~----- 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGSIRLDGEDITKLPPHERA----- 73 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEECCCCCHHHHH-----
Confidence 4689999999988999999999999999999999999999999999985 467889999988766432211100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++.. ..+...++.+++.... ...+ ......+..++..+++-....++++.+|||||+|||+||||
T Consensus 74 -~~~i~~~~q~~---~~~~~~tv~~~l~~~~---~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 74 -RAGIAYVPQGR---EIFPRLTVEENLLTGL---AALP-RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred -HhCeEEeccCC---cccCCCcHHHHHHHHH---HhcC-cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 01112222211 1112234444442211 1111 11233456778887632245688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~-~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS-GAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHc
Confidence 99999999999999999999999999998764 57999999999999999999999999999864 565543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=353.09 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=165.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+. ..+..
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~-~~~~i---------- 389 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIG-ETVKL---------- 389 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEC-CceEE----------
Confidence 369999999999988999999999999999999999999999999999985 46778888763 22100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++++.. .......++.+++.... ...+.......+..+|+.+||.....++++.+|||||||||+||
T Consensus 390 -------~~v~q~~--~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 390 -------AYVDQSR--DALDPNKTVWEEISGGL---DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred -------EEEeCch--hhcCCCCCHHHHHHhhc---ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 0000000 00111223333332110 00011111334567899999975456899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC-CEEEEEcCCHHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ-QKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~-G~i~~~~g~y~~f~~~~ 381 (548)
|||+.+|+||||||||||||+.++.+|.++|.++.+|||+||||++++..+||+|++|++ |++..|.|+|++|.+..
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999999999999999999988999999999999999999999986 89998999999986554
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=325.18 Aligned_cols=219 Identities=23% Similarity=0.283 Sum_probs=164.5
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.+.|+++.|++..+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+.++...+...+.....
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--~~p~~G~i~i~g~~~~~~~~~~~~~~~~-- 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELRELRR-- 101 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccChhhhhhhhc--
Confidence 467999999999999999999999999999999999999999999985 4678899999887654322111100000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
....++++. ....+..++.+++.... .+..........++.++|+.+|+. ...++++.+|||||+|||+|||||
T Consensus 102 -~~i~~v~q~---~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 102 -KKISMVFQS---FALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred -CcEEEEecC---cccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHH
Confidence 011112211 11122345555543211 111111112345678899999997 457899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+++
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 248 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV-GTPEEI 248 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999988765 57999999999999999999999999999865 555544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=319.15 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~--- 79 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIAR--- 79 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--cCCCcceEEECCEECCCCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999888664322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH---------HHHh---cCCC--ChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYE---------ELKA---IGAD--SAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~---------~l~~---~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
....+.++. .......++.+++..... .+.. .... ....++.++++.+|+. ...++++.
T Consensus 80 ---~~i~~~~q~---~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~ 152 (255)
T PRK11300 80 ---MGVVRTFQH---VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAG 152 (255)
T ss_pred ---cCeEEeccC---cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChh
Confidence 001111111 111222344444432110 0000 0001 1234677889999996 46789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||+|||+|||||+.+|+||||||||++||+.++..|.++|.++ +.|||+||||++++..+||++++|++|++
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999988754 57999999999999999999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+. .|+.+.+
T Consensus 233 ~~-~~~~~~~ 241 (255)
T PRK11300 233 LA-NGTPEEI 241 (255)
T ss_pred Ee-cCCHHHH
Confidence 85 4555544
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=321.25 Aligned_cols=220 Identities=21% Similarity=0.338 Sum_probs=165.2
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|..|+|.+.+..+...... ....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~-~~~~- 76 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--LKPTSGEVLIKGEPIKYDKKS-LLEV- 76 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEECccccch-HHHH-
Confidence 378999999996 46799999999999999999999999999999999985 467789999998876321110 0000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+||++||
T Consensus 77 ---~~~i~~v~q~~~--~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 77 ---RKTVGIVFQNPD--DQLFAPTVEEDVAFGPL-NLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred ---HhheEEEeeChh--hhhccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHH
Confidence 011111111110 01122344444421110 001111123356788999999974 67899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 224 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE-GTPKEV 224 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999865 57999999999999999999999999999875 666654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=320.99 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+..
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~--- 81 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTPAHGHVWLDGEHIQHYASKEVAR--- 81 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEEhhhCCHHHHhh---
Confidence 58999999999988899999999999999999999999999999999985 4677899999887653222111110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++++.. ...+..++.+++......... ... .....++.++++.+|+. ...++++.+|||||+|||+
T Consensus 82 ----~i~~v~q~~---~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 82 ----RIGLLAQNA---TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred ----heEEeeccC---cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHH
Confidence 111222111 111223343333210000000 000 11234678899999997 4678999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |..+++
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 231 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ-GAPKEI 231 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999988764 57999999999999999999999999999864 555443
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=319.85 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.++++.........
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~- 97 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE- 97 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH-
Confidence 59999999999988899999999999999999999999999999999995322 14789999988876421110000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc--CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI--GADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. .....++.+.. ..+..++.+++.... .+... .......++.++++.+|+.. ...++++.+|||||
T Consensus 98 -~---~~~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 98 -L---RARVGMVFQKP----NPFPKSIYENVAYGP-RIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred -H---hhceEEEecCC----CCCCCcHHHHHHHHH-HhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 0 00111111110 112224455443211 11111 11123456788999999963 24578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 247 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV-GDTE 247 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999875 36999999999999999999999999999865 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 248 ~~ 249 (267)
T PRK14235 248 KM 249 (267)
T ss_pred HH
Confidence 43
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=346.44 Aligned_cols=226 Identities=24% Similarity=0.330 Sum_probs=169.5
Q ss_pred cccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 144 AVDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
...++++||++.|.. ..+++||||+|.+||++||||+||||||||.|+|+|+ ..|.+|.|.++++++
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--~~P~~G~i~~~g~~~ 355 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQDL 355 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEEeCccc
Confidence 356889999999973 2479999999999999999999999999999999985 467899999999873
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
... ....... .....+.++.. .....+..++.+.+.+...............++.++|+.+|++...++++|++
T Consensus 356 ~~~-~~~~~~~----r~~~QmvFQdp-~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e 429 (539)
T COG1123 356 DLT-GGELRRL----RRRIQMVFQDP-YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429 (539)
T ss_pred ccc-cchhhhh----hhheEEEEeCc-ccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 211 1111110 00111111111 01111233444444433221111112334467889999999998889999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|++||+|||||+||+..+..+.++|.++ +.|+||||||+.++..+||||++|++|+|+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 9999999999999999999999999999999999998888888654 689999999999999999999999999999
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
+.+.....|
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 986333334
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=319.13 Aligned_cols=220 Identities=20% Similarity=0.295 Sum_probs=164.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||+++|++..+|+|+||+|.+|+++||+|||||||||||++|+|...+ .|.+|+|.+.++++.... ...+
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 58999999999988899999999999999999999999999999999996321 146899999887763211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ....++++.. ..+..++.+++.................++.++++.+++.. ...++++.+|||||
T Consensus 93 ~-------~~i~~~~q~~----~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 93 R-------AKVGMVFQKP----TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred h-------cceEEEecCC----ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 1 0111111111 11223444444221110001111122356788999999842 34678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF-GNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 46999999999999999999999999999876 5555
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 241 ~~ 242 (260)
T PRK10744 241 TI 242 (260)
T ss_pred HH
Confidence 44
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=316.81 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++.+...... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~-~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD-LVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch-HHH
Confidence 589999999999888999999999999999999999999999999999953211 3689999988876321110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++..... ...... .....++.++++.+++. ....++++.+|||||+
T Consensus 83 ~----~~~i~~~~q~~----~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 83 L----RKEVGMVFQQP----TPFPFSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred h----hccEEEEecCC----ccCCCcHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHH
Confidence 0 00111111111 1122344444422111 111110 11234567889999984 2345788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 231 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTE 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHH
Confidence 9999999999999999999999999999999999999876 57999999999999999999999999999876 4443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=321.79 Aligned_cols=217 Identities=19% Similarity=0.269 Sum_probs=164.7
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||++.|++ +++|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--LLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCcHHHHhhh
Confidence 5899999999974 5699999999999999999999999999999999985 46889999999987643221111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..++++.. ....+..++.+++..... ...........++.+++..+||. ...++.+.+|||||+|||+|
T Consensus 83 -------i~~~~q~~--~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 83 -------VGMVFQNP--DNQFVGATVQDDVAFGLE-NIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAI 151 (279)
T ss_pred -------eEEEEeCH--HHhcccccHHHHHhhhHh-hCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 11111110 001222344444422111 11111122345688899999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+.+
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~~ 227 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEE-GTPEEI 227 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999998764 579999999999997 5999999999999864 665554
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=317.95 Aligned_cols=223 Identities=19% Similarity=0.289 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.++.+........ .
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~-~ 82 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV-S 82 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH-H
Confidence 489999999999888999999999999999999999999999999999953211 357999998887642111000 0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqkq 299 (548)
. .....++++. .......++.+++.................++.++++.+|+.. ...+..+.+|||||+|
T Consensus 83 ~----~~~i~~~~q~---~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 83 I----RRRVGMVFQK---PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred h----hccEEEEecC---CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 0 0011111111 1112224555554321110000111223456788899999853 3456789999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.+ |+.+++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 234 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC-GETKKI 234 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999999999876 57999999999999999999999999999876 554443
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=315.64 Aligned_cols=219 Identities=20% Similarity=0.300 Sum_probs=158.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH-HHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE-SVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~-~~~ 224 (548)
+|+++||++.|+++++|+++||+|.+|++++|+|+|||||||||++|+|.....|.+|+|.+.+.++...+..... ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 3789999999998889999999999999999999999999999999998521257889999888665322111110 000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc------CCCChHHHHHHHHHhCCCChhhhhcccC-CCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI------GADSAEPRARRILAGLGFSRAMQDRATK-NFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGq 297 (548)
....+...+. ...+.......+...+... ........+.++++.+++.....++.+. +|||||
T Consensus 81 ~~~~q~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 81 FMAFQYPVEI----------PGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred EEEecCchhc----------cchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 0000000000 0001111111010001000 0112245667889999996555677775 799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|..+ ++|||+||||++++..+ ||+|++|++|+++. .|+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~ 229 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGD 229 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCC
Confidence 99999999999999999999999999999999999887654 57999999999999887 89999999999985 577
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
++
T Consensus 230 ~~ 231 (248)
T PRK09580 230 FT 231 (248)
T ss_pred HH
Confidence 66
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=316.46 Aligned_cols=216 Identities=18% Similarity=0.201 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+...+.... .
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~- 78 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--PRATSGRIVFDGKDITDWQTAKI---M- 78 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCceEEECCEecCCCCHHHH---H-
Confidence 58999999999988899999999999999999999999999999999985 46788999998887643221110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ..+...++.+++.... ...........+.++++.+ ++. ...++++.+|||||+|||+||
T Consensus 79 --~~~i~~~~q~~---~~~~~~tv~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 79 --REAVAIVPEGR---RVFSRMTVEENLAMGG---FFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred --HhCEEEeccCc---ccCCCCcHHHHHHHhh---hccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHH
Confidence 00111111111 1112234444442211 0011112234566777877 465 346788999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.++.
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 224 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE-DTGDAL 224 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee-CCHHHH
Confidence 9999999999999999999999999999988754 57999999999999999999999999999854 666544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=316.75 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.....| .+|+|.+.++.+....... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~-~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV-VQ 83 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH-HH
Confidence 5899999999998889999999999999999999999999999999998532123 4899999887663211100 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. .....++.+.. ..+..++.+++.... ......... ...++.++++.+++. ....++++.+|||||+
T Consensus 84 ~----~~~i~~~~q~~----~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 84 L----RKQVGMVFQQP----NPFPFSIYENVIYGL-RLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred h----cCeEEEEECCC----ccCCCcHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 0 00111111110 011234444432211 111111111 134566778888764 2346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++.+++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 47999999999999999999999999999988666665
Q ss_pred HH
Q psy11936 377 FK 378 (548)
Q Consensus 377 f~ 378 (548)
|.
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 53
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=313.25 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=160.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+...+......
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~--- 81 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDISTLKPEIYRQ--- 81 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEcCcCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985 4678899999887654322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++++.. ..+..++.+++.... .+ ........++.++++.+|+.....++++.+|||||+|||+|||
T Consensus 82 ----~i~~~~q~~----~l~~~tv~enl~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 82 ----QVSYCAQTP----TLFGDTVYDNLIFPW-QI--RNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred ----ccEEEeccc----ccccccHHHHHHhHH-hh--cCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 111111111 112234444443211 11 1112234567789999999655678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEe--CCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLD--QQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~--~G~i~~~~g~y~ 375 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++. .||+|++|+ .|+|. .|+|+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~--~~~~~ 223 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ--EARYE 223 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh--hhhhc
Confidence 999999999999999999999999999988765 579999999999996 699999996 45543 46654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=320.68 Aligned_cols=217 Identities=26% Similarity=0.341 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~~ 223 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+..... ..+...
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--LRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEECCccccHHHHHhh
Confidence 378999999995 56799999999999999999999999999999999985 46788999998876632211 111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
..++.+... ...+..++.+++.... ............++.++++.+|+.. ..++++..|||||+|||+|
T Consensus 79 -------i~~v~q~~~--~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 -------VGIVFQNPE--TQFVGRTVEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred -------eEEEEEChh--hhcccchHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHH
Confidence 111111100 0012234444432111 0101111223456788999999974 5789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+++
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~ 222 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLE-GEPENV 222 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999988754 579999999999995 6999999999999864 665554
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=310.63 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=156.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++. .|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++..... ..
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~~~~--~~----- 69 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--ETPQSGRVLINGVDVTAAPP--AD----- 69 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEcCcCCH--hH-----
Confidence 46899999998754 399999999999999999999999999999985 46788999998876642211 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+.. ......++.+++..... .... ....+.++.++++.+|+.. ..++++.+|||||||||+|||
T Consensus 70 --~~i~~~~q~~---~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 70 --RPVSMLFQEN---NLFAHLTVEQNVGLGLS--PGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALAR 141 (211)
T ss_pred --ccEEEEeccc---ccCCCCcHHHHHhcccc--cccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHH
Confidence 0111111111 11122344444421110 0001 1123456888999999974 578899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999999999999999999999998764 5799999999999999999999999999875
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=336.13 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=160.3
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
+.++...|+...+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+.++...+...+.....
T Consensus 31 ~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--~~p~sG~I~i~G~~i~~~~~~~l~~~~~--- 105 (400)
T PRK10070 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--IEPTRGQVLIDGVDIAKISDAELREVRR--- 105 (400)
T ss_pred HHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCCEEEECCEECCcCCHHHHHHHHh---
Confidence 33333444333489999999999999999999999999999999985 4688999999988764322211110000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
....++++. ...++..++.+++.... .+..........++.++|+.+||.. ..++++.+|||||||||+|||||+
T Consensus 106 ~~igyv~Q~---~~l~~~~Tv~enl~~~~-~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~ 180 (400)
T PRK10070 106 KKIAMVFQS---FALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALA 180 (400)
T ss_pred CCEEEEECC---CcCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHh
Confidence 011122211 11222345666553221 1111111223457888999999974 678999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~-g~~~~l 252 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV-GTPDEI 252 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec-CCHHHH
Confidence 999999999999999999999999988654 57999999999999999999999999999864 555554
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=314.09 Aligned_cols=219 Identities=20% Similarity=0.302 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccC-chhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVAD-DLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~-~~~~~~ 221 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|...+. +.+|+|.+.+.++... +...+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 589999999999888999999999999999999999999999999999953211 3589999988765321 111111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ...++.+.. ..+..++.+++.... ....... .....++.++++.+|+.. ...++++.+|||||
T Consensus 83 ~-------~i~~~~q~~----~~~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 83 I-------KVGMVFQKP----NPFPMSIYENVAYGL-RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred h-------heeEEecCC----CcCcccHHHHHHhHH-HhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 1 111121111 112234444442111 0111111 112345677888888753 34578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 229 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH-DDTQ 229 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 47999999999999999999999999999865 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
.+
T Consensus 230 ~~ 231 (249)
T PRK14253 230 VI 231 (249)
T ss_pred HH
Confidence 43
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=316.63 Aligned_cols=217 Identities=19% Similarity=0.289 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.++++.... ...+
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 5999999999998889999999999999999999999999999999999632113 4899999888764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.. ...++++.. ..+..++.+++... ....+. .....++.++++.+|+.. ...++++.+||
T Consensus 92 ~~-------~i~~v~q~~----~~~~~tv~enl~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 157 (259)
T PRK14274 92 RK-------NIGMVFQKG----NPFPQSIFDNVAYG---PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLS 157 (259)
T ss_pred hh-------ceEEEecCC----cccccCHHHHHHhH---HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCC
Confidence 11 111111111 11122444444211 111111 112345778899999853 34678899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g 236 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC-N 236 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-C
Confidence 99999999999999999999999999999999999999999876 47999999999999999999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 237 ~~~~~ 241 (259)
T PRK14274 237 DTNKM 241 (259)
T ss_pred CHHHH
Confidence 65554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=314.24 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.+.++..... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 589999999999888999999999999999999999999999999999953221 368999998877642111 011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++++.. ..+..++.+++.... ..... .......++.++++.+|+.. ...++++.+||||
T Consensus 84 ~~-------~i~~~~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 84 RK-------RVGMVFQKP----NPFPMSIYDNVAYGP-RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred Hh-------heEEEecCC----CcCCCcHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 11 111222111 112234444442111 11111 01122356778899998742 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++ +.
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~-~~ 230 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN-KT 230 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC-CH
Confidence 999999999999999999999999999999999999999876 479999999999999999999999999998764 44
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 231 ~~ 232 (251)
T PRK14270 231 EK 232 (251)
T ss_pred HH
Confidence 33
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=313.08 Aligned_cols=213 Identities=28% Similarity=0.316 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|.++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|..|.|.+.++++...... ..
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~--~~---- 72 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--ETPTSGEILLDGKDITNLPPH--KR---- 72 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCChh--hc----
Confidence 4689999999988999999999999999999999999999999999985 467789999988766422110 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
...+..+.. ......++.+++..... ...........++..+++.+|+. ...++.+..|||||+|||+||||
T Consensus 73 ---~i~~~~q~~---~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 73 ---PVNTVFQNY---ALFPHLTVFENIAFGLR-LKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred ---ceEEEeccc---ccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHH
Confidence 111111111 11112344444322111 11111122345677899999997 46788999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+.+|++|||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~ 217 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI-GTPEE 217 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec-CCHHH
Confidence 99999999999999999999999999988764 57999999999999999999999999999876 44443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=316.32 Aligned_cols=220 Identities=25% Similarity=0.315 Sum_probs=161.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~--~~~~ 220 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.+ .+|+|.+.+..+.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 5889999999998899999999999999999999999999999999999632222 3799999887664211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ......++.+++..... ....... ...+.+.+++..+++.. ...++++.+||||
T Consensus 84 ~~-------~i~~~~q~~---~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 152 (252)
T PRK14272 84 RR-------RVGMVFQKP---NPFPTMSVFDNVVAGLK-LAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGG 152 (252)
T ss_pred hc-------eeEEEeccC---ccCcCCCHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHH
Confidence 10 111111111 11122345554432111 1111011 12344566677777632 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|+++. .|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~ 231 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH-GPT 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 9999999999999999999999999999999999999998763 7999999999999999999999999999864 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 232 ~~~ 234 (252)
T PRK14272 232 DQL 234 (252)
T ss_pred HHH
Confidence 443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=335.27 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=163.9
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+.|+++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++++...+...+.... .....+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--~~p~~G~I~i~G~~i~~~~~~~~~~~r---r~~i~~ 75 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--IEPTAGQIFIDGENIMKQSPVELREVR---RKKIGM 75 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CCCCceEEEECCEECCcCCHHHHHHHH---hCcEEE
Confidence 468888999999999999999999999999999999999985 478899999999887543322211000 011122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+++. ...++..++.+++..... +..........++.++|+.+||. ...++++.+|||||||||+|||||+.+|+|
T Consensus 76 v~Q~---~~l~~~~TV~eNi~~~~~-~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 76 VFQQ---FALFPHMTILQNTSLGPE-LLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EECC---CcCCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2221 122234566666543211 11111122356788999999997 467999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||||++||+.++.++.+.|..+ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~-g~~~ei 217 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV-GTPDEI 217 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee-CCHHHH
Confidence 9999999999999999999988654 57999999999999999999999999999875 555544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=317.75 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=163.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc-hhHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD-LTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~-~~~~ 220 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+..+.... ...+
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 4689999999999889999999999999999999999999999999999953221 46899999887653211 1011
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGW 297 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGq 297 (548)
. ....++++.. ..+..++.+++..................+.++++.+|+.. ...++.+.+|||||
T Consensus 100 ~-------~~i~~v~q~~----~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 100 R-------RRVGMLFQRP----NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred h-------hheEEeccCC----ccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHH
Confidence 1 1111222111 11223444444221100000011112234567889999863 23578899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.+|.++|..+ ..|||+||||++++..+||++++|++|+++.. |+.+
T Consensus 169 ~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~-g~~~ 247 (276)
T PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE-GPTE 247 (276)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 47999999999999999999999999999865 5555
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 248 ~~ 249 (276)
T PRK14271 248 QL 249 (276)
T ss_pred HH
Confidence 44
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=313.01 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|...+. |.+|+|.+.+.++....... ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~-~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV-TE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH-HH
Confidence 589999999999889999999999999999999999999999999999853221 36899999887653211000 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++++.. ..+..++.+++..... ...... ...+..+.++++.+|+.. ...++++.+|||||+
T Consensus 82 ~----~~~i~~~~q~~----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 82 Y----RKKVGMVFQKP----TPFPMSIYDNVAFGPR-IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred h----hhhEEEEecCC----ccCcccHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence 0 00111111111 1122344444432111 111111 112345677889999853 246889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY-GPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHH
Confidence 9999999999999999999999999999999999999875 47999999999999999999999999999865 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 232 ~ 232 (250)
T PRK14262 232 I 232 (250)
T ss_pred H
Confidence 3
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=318.33 Aligned_cols=218 Identities=22% Similarity=0.351 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeC---------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK---------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~---------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
+|+++||++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--ESPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEeccccC
Confidence 589999999997 46899999999999999999999999999999999985 4678899999887654322
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
....... .....++.+.... ......+..+++......+..........++.++++.+|+.....++.+.+||||
T Consensus 81 ~~~~~~~----~~~i~~v~q~~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 81 RAQRKAF----RRDIQMVFQDSIS-AVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGG 155 (268)
T ss_pred hhHHHHH----HhcEEEEEcChhh-ccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChH
Confidence 1110000 0011111111000 0111223333322111111111111223467899999999745678999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+|||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++..
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999999998888888654 57999999999999999999999999999865
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=314.85 Aligned_cols=220 Identities=21% Similarity=0.338 Sum_probs=163.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccC--chhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVAD--DLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~--~~~~ 219 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+.| .+|+|.+.++++... ....
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 36899999999998899999999999999999999999999999999998532223 379999988876432 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
... ...++.+.. ..+..++.+++.... ...... ....+..+.++++.+++.. ...++.+.+|||
T Consensus 85 ~~~-------~i~~~~q~~----~~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 85 LRR-------KIGMVFQRP----NPFPKSIYENVAYGP-RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred hhc-------eEEEEecCC----ccCcccHHHHHHhhH-HhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 100 111111111 112234445443211 111100 1122345677888888742 245788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+
T Consensus 153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~-g~ 231 (253)
T PRK14261 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF-DK 231 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc-CC
Confidence 9999999999999999999999999999999999999999875 47999999999999999999999999999865 55
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+++
T Consensus 232 ~~~~ 235 (253)
T PRK14261 232 TTQI 235 (253)
T ss_pred HHHH
Confidence 5443
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=315.28 Aligned_cols=221 Identities=20% Similarity=0.295 Sum_probs=160.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.....|.+|+|.+.+.++...........
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~- 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL- 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee-
Confidence 3699999999998888999999999999999999999999999999999852235788999998876543221110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---hcC---CCChHHHHHHHHHhCCCChhhhhcccC-CCCHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---AIG---ADSAEPRARRILAGLGFSRAMQDRATK-NFSGGW 297 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGq 297 (548)
...+..+.. ......+..+++........ ... ......++.++|+.+|+.....++.+. .|||||
T Consensus 85 -----~~~~~~q~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 85 -----GIFLAFQYP---IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred -----eEEEEeccc---cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 000000100 00111122222211110000 000 011234677899999997445677787 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~-~~ 235 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT-GD 235 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe-cC
Confidence 99999999999999999999999999999999999999765 57999999999999887 999999999999864 55
Q ss_pred HH
Q psy11936 374 YS 375 (548)
Q Consensus 374 y~ 375 (548)
.+
T Consensus 236 ~~ 237 (252)
T CHL00131 236 AE 237 (252)
T ss_pred hh
Confidence 44
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=319.93 Aligned_cols=217 Identities=21% Similarity=0.296 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC---eEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN---IDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~---g~I~~~~q~i~~~~~~~~ 220 (548)
+|+++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|.. .|.. |+|.+.+.++........
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~--~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL--LPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc--CCCCCCCcEEEECCEECCcCCHHHH
Confidence 5899999999964 46999999999999999999999999999999999853 4544 899998887643221111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
... .+++.+.. ....+..++.+++.... ............++.++++.+|+. ...++++.+|||||+||
T Consensus 83 ~~~-------ig~v~q~~--~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REK-------VGIVFQNP--DNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQR 151 (282)
T ss_pred Hhh-------eEEEEECH--HHhhccCCHHHHHHhhH-HhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHH
Confidence 111 11111110 01122334455442111 011111112345688899999997 46789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++.+|.++|..+ +.|||+||||++++. +||+|++|++|+++.+ |+.++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~ 229 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQ-GSPVE 229 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999999999988764 579999999999995 7999999999999976 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 230 ~ 230 (282)
T PRK13640 230 I 230 (282)
T ss_pred H
Confidence 3
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=317.76 Aligned_cols=218 Identities=17% Similarity=0.295 Sum_probs=165.1
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCc--hhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADD--LTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~--~~~ 219 (548)
.+|+++||+++|+++++|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+.++.... ...
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 369999999999988999999999999999999999999999999999996322 257899999887763211 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNF 293 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~L 293 (548)
+.. ...++++.. ..+..++.+++.... ...+. .....++.++++.+++.. ...++++.+|
T Consensus 99 ~~~-------~i~~v~q~~----~~~~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 164 (267)
T PRK14237 99 MRK-------HIGMVFQRP----NPFAKSIYENITFAL---ERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL 164 (267)
T ss_pred Hhc-------ceEEEecCC----ccccccHHHHHHhHH---HhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence 111 111111111 111234445443211 11111 123456778899999852 3568889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~- 243 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY- 243 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999998875 37999999999999999999999999999976
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+.+
T Consensus 244 g~~~~~ 249 (267)
T PRK14237 244 DKTRNI 249 (267)
T ss_pred CCHHHH
Confidence 555544
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=310.06 Aligned_cols=203 Identities=28% Similarity=0.394 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.....
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~~~~~~--------- 69 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGEIIFDGHPWTRKDL--------- 69 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEecccccc---------
Confidence 4689999999988999999999999999999999999999999999985 46788999988865421110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++. .......++.+++.... .+ .+ ....++.++++.+|+.. ..++++.+|||||+||++||||
T Consensus 70 --~~~~~~~q~---~~~~~~~t~~~~~~~~~-~~--~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 70 --HKIGSLIES---PPLYENLTARENLKVHT-TL--LG--LPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIA 138 (223)
T ss_pred --ccEEEEcCC---CCccccCCHHHHHHHHH-HH--cC--CCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHH
Confidence 001111111 01112234444442211 11 11 12457888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999765 469999999999999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=345.98 Aligned_cols=212 Identities=28% Similarity=0.429 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+. ..+..
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~G~i~~~-~~~~i---------- 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--EQPDSGTIKIG-ETVKL---------- 387 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--CCCCCeEEEEC-CceEE----------
Confidence 369999999999988999999999999999999999999999999999985 35778888763 22100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
+++.+.. .......++.+++.... ...+......++..+|..+||.....++++.+|||||||||+||
T Consensus 388 -------~~v~q~~--~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 388 -------AYVDQSR--DALDPNKTVWEEISGGL---DIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred -------EEEeCCc--cccCCCCcHHHHHHhhc---cccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 0000000 00011223333322110 00011112334567899999975456889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC-CEEEEEcCCHHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ-QKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~-G~i~~~~g~y~~f~~~~ 381 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++ |++..|.|+|++|.+.+
T Consensus 456 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 456 KTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK 533 (552)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999988999999999999999999999987 68988999998886543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=308.93 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=151.8
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|+++.|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+..........
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 78 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGSVLLDGTDIRQLDPADLRR-- 78 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCeEEECCEEhHHCCHHHHHh--
Confidence 789999999975 5799999999999999999999999999999999985 3678899999887653211111100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcc-----------cCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRA-----------TKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~-----------~~~L 293 (548)
...++.+.. ..+..++.+++ ...........+.++++.+++.. ..++. +.+|
T Consensus 79 -----~i~~~~q~~----~~~~~tv~e~l-------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~L 141 (220)
T cd03245 79 -----NIGYVPQDV----TLFYGTLRDNI-------TLGAPLADDERILRAAELAGVTD-FVNKHPNGLDLQIGERGRGL 141 (220)
T ss_pred -----hEEEeCCCC----ccccchHHHHh-------hcCCCCCCHHHHHHHHHHcCcHH-HHHhccccccceecCCCccC
Confidence 111111110 01112222222 11111122445667888888864 34543 4699
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||+|||+|||||+.+|++|||||||++||+.++.++.++|.++. .|||+||||++++ .+||+|++|++|+++.+
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999998763 6999999999987 69999999999998753
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=311.23 Aligned_cols=198 Identities=22% Similarity=0.275 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
+.++|+++.|+++++|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+.....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~i~~~g~~~~~~~~--------- 91 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRGRVSSLLGL--------- 91 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEchhhcc---------
Confidence 6788999999999999999999999999999999999999999999985 46888999988765421000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
. ....+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 92 ---~----------~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~lara 156 (224)
T cd03220 92 ---G----------GGFNPELTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIA 156 (224)
T ss_pred ---c----------ccCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHH
Confidence 0 000112333343321110 111111122345678899999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999888888764 47999999999999999999999999998753
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=312.08 Aligned_cols=213 Identities=22% Similarity=0.275 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++.. .++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... ..
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~--~~--- 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--LTPASGSLTLNGQDHTTTPPS--RR--- 71 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCeecCcCChh--hc---
Confidence 378999999998643 499999999999999999999999999999985 467889999988765321110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++++.. ......++.+++..... .... ......++.++++.+|+. ...++++.+|||||+|||+||
T Consensus 72 ----~i~~~~q~~---~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 72 ----PVSMLFQEN---NLFSHLTVAQNIGLGLN--PGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred ----cEEEEeccc---ccccCCcHHHHHhcccc--cccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHH
Confidence 011111110 11112344444321110 0001 112345688899999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|++++ .|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW-DGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999988888654 5799999999999999999999999999985 57777654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=344.78 Aligned_cols=209 Identities=27% Similarity=0.461 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.....
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--~~p~~G~i~~~~~~~i~---------- 385 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--LEPDSGTVKWSENANIG---------- 385 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCceEEE----------
Confidence 369999999999988899999999999999999999999999999999985 46778888765531100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
++.+... .......++.+++.. +. .......++.++|+.+|+.....++++.+|||||||||+||
T Consensus 386 --------~~~q~~~-~~~~~~~t~~~~~~~----~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 386 --------YYAQDHA-YDFENDLTLFDWMSQ----WR--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred --------EEccccc-ccCCCCCcHHHHHHH----hc--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 0000000 000011222222210 10 11123456888999999964567999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKM 380 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~ 380 (548)
|||+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++|+++.+.|++++|.+.
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999998788999887543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=318.29 Aligned_cols=217 Identities=25% Similarity=0.299 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--------CeEEEEeceeeccCch
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP--------NIDILYCEQEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~--------~g~I~~~~q~i~~~~~ 217 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|.. .|. +|+|.+.+.++.....
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~--~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL--TGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCcccccccCCceEEEECCEEcccCCH
Confidence 378999999999889999999999999999999999999999999999852 444 7999998876542221
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
..+.. ...++++.. ...+..++.+++....... ...+. .....++..+|+.+|+.. ..++++.+||
T Consensus 79 ~~~~~-------~~~~v~q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS 147 (272)
T PRK13547 79 PRLAR-------LRAVLPQAA---QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLS 147 (272)
T ss_pred HHHHh-------hcEEecccC---CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCC
Confidence 11111 011112111 1122334444442210000 00000 112346788999999974 5689999999
Q ss_pred HHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 295 GGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 295 GGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|||+|||+|||||+ .+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999999988754 57999999999999999999999
Q ss_pred EeCCEEEEEcCCHHH
Q psy11936 362 LDQQKLYYYKGNYSM 376 (548)
Q Consensus 362 L~~G~i~~~~g~y~~ 376 (548)
|++|+++.. |+.++
T Consensus 228 l~~G~i~~~-g~~~~ 241 (272)
T PRK13547 228 LADGAIVAH-GAPAD 241 (272)
T ss_pred EECCeEEEe-cCHHH
Confidence 999999864 55443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=316.76 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~- 83 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSGEIKIDGITISKENLKEIRK- 83 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCcCCHHHHhc-
Confidence 689999999995 46799999999999999999999999999999999985 4678899999887764222111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+... ..++..++.+++..... ...........++.++++.+|+. ...++.+.+|||||+||++|
T Consensus 84 ------~i~~v~q~~~--~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 84 ------KIGIIFQNPD--NQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred ------ceEEEEeCHH--HhcCcccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHH
Confidence 1111111110 01123344554432110 10111112334678899999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.++
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~ 228 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQ-GKPKE 228 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEe-cCHHH
Confidence 99999999999999999999999999999999765 379999999999986 7999999999999865 55444
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=322.27 Aligned_cols=327 Identities=19% Similarity=0.238 Sum_probs=231.7
Q ss_pred ccEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~ 217 (548)
..|+++||++.|. ...++++|||+|.+||.+||||.||||||-....|+|++-. ..++|+|.|.|.++.....
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 3689999999995 46799999999999999999999999999999999985321 2346899999998876554
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSG 295 (548)
..++.+-+.. ..++++... ....+-.+...++.+.+.....++...++.++.++|+.+|+.+ ..++.+|++|||
T Consensus 85 ~~lr~iRG~~---I~MIFQEPM-tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNK---IGMIFQEPM-TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred HHHhhhcccc---eEEEecccc-cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 4443332211 112222110 0111112333444444444455666778889999999999973 467899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||+||.||+++|++||.||||.+||...+..+.++|+++ ++++++||||+..+.++||||++|.+|++++.+
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 9999999999999999999999999999999999888888764 789999999999999999999999999999865
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccce
Q psy11936 372 GNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYV 451 (548)
Q Consensus 372 g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~ 451 (548)
..-..|.... .-..+++...+ |.-
T Consensus 241 ~t~~lF~~Pq-------------------------------------------HpYTr~Ll~ae-----------P~g-- 264 (534)
T COG4172 241 TTETLFAAPQ-------------------------------------------HPYTRKLLAAE-----------PSG-- 264 (534)
T ss_pred cHHHHhhCCC-------------------------------------------ChHHHHHHhcC-----------CCC--
Confidence 4433332110 00111121110 100
Q ss_pred eeeecCCCCCCCCCcEEEEeeEEEeCCC----------CcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCC
Q psy11936 452 VKFSFPDPPPLQPPILGLHNVTFAYEGM----------KPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQ 516 (548)
Q Consensus 452 ~~~~f~~~~~~~~~vL~l~~vs~~Y~~~----------~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~ 516 (548)
.-++.+..++++|++++|...|+-. -..++++||+. .|.|+-|.|- +|||=..|.+.+++.+
T Consensus 265 ---~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G 341 (534)
T COG4172 265 ---DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG 341 (534)
T ss_pred ---CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCc
Confidence 0011223467899999999999621 12577888874 8999999885 6898888889988774
Q ss_pred CCeeecccee-eeeeeccc
Q psy11936 517 PPILGLHNVT-FAYEGMKP 534 (548)
Q Consensus 517 ~~~~~~~n~~-~~y~~~~~ 534 (548)
.-.+.+.-+. .++=++.|
T Consensus 342 ~I~F~G~~i~~~~~~~mrp 360 (534)
T COG4172 342 EIRFDGQDIDGLSRKEMRP 360 (534)
T ss_pred eEEECCccccccChhhhhh
Confidence 4455555544 33334444
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=317.19 Aligned_cols=217 Identities=21% Similarity=0.297 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+.......+...
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--EKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHHHhh
Confidence 5899999999975 3599999999999999999999999999999999985 46788999998887643221111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+ .++.+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|
T Consensus 85 i-------~~v~q~~~--~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 I-------GIVFQNPD--NQFVGSIVKYDVAFGLE-NHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred e-------eEEEeChH--HhcccccHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHH
Confidence 1 11111100 01111222222211100 000111122356778999999974 6788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|+++.. |+.+.+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~~ 229 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE-GTPTEI 229 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999999988764 5799999999999975 999999999999865 555543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=318.40 Aligned_cols=221 Identities=23% Similarity=0.298 Sum_probs=163.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|..... |.+|.|.+.++.+........
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~- 116 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV- 116 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH-
Confidence 4689999999998888999999999999999999999999999999999953112 478999998876532110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCC---hhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFS---RAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGq 297 (548)
. . .....++.+.. ..+..++.+++.... .+..... .....++.++++.+|+. ....++++.+|||||
T Consensus 117 ~-~---~~~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 117 L-L---RKKIGMVFQKP----NPFPKSIFDNIAYGP-RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred H-h---hhcEEEECCCC----CCCccCHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 0 0 00111111111 112234555543211 1111111 11234567888888874 235678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||.+++..+||+|++|++|+++.+ |..+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~-g~~~ 266 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH-APTA 266 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999999999876 35999999999999999999999999999865 5544
Q ss_pred H
Q psy11936 376 M 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 267 ~ 267 (286)
T PRK14275 267 Q 267 (286)
T ss_pred H
Confidence 4
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=306.46 Aligned_cols=210 Identities=24% Similarity=0.359 Sum_probs=151.5
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|++++|++ +.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+.......+...+
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 3789999999975 5799999999999999999999999999999999985 367789999888765321111111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~~~~~L 293 (548)
....+...+ +..++.+++ ..........++..++..+ |+.. ..++++.+|
T Consensus 80 ~~~~q~~~~-----------~~~tv~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~L 140 (229)
T cd03254 80 GVVLQDTFL-----------FSGTIMENI-------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT-VLGENGGNL 140 (229)
T ss_pred EEecCCchh-----------hhhHHHHHH-------hccCCCCCHHHHHHHHHHhChHHHHHhCcccccC-HhhcCCCcC
Confidence 111111000 011222221 1100111122333333333 3432 345668999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++.+|.++|..+ +.|||+||||+.++. .||+|++|++|+++. .
T Consensus 141 S~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~-~ 218 (229)
T cd03254 141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIE-E 218 (229)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEE-e
Confidence 999999999999999999999999999999999999999999876 379999999999996 599999999999985 5
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+++.+.
T Consensus 219 ~~~~~~~ 225 (229)
T cd03254 219 GTHDELL 225 (229)
T ss_pred CCHHHHH
Confidence 7776654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=285.11 Aligned_cols=228 Identities=23% Similarity=0.316 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|.++|+++.||...+|-||+|+...|+.+.|+||||+|||||+|.|. .+..|.+|...+-++.+.......- ..+.
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln--lle~p~sg~l~ia~~~fd~s~~~~~-k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN--LLEMPRSGTLNIAGNHFDFSKTPSD-KAIR 78 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH--HHhCCCCCeEEecccccccccCccH-HHHH
Confidence 589999999999999999999999999999999999999999999997 4567888888887776654332211 1111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+..+++++. ....+.+++.+++.+.-.....+....+..++.++|.++.+.+ ..|+.|-.|||||+|||+|||
T Consensus 79 ~lr~~vgmvfqq---y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiar 154 (242)
T COG4161 79 DLRRNVGMVFQQ---YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHHHhhhhhhhh---hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHH
Confidence 112222333221 2233456777776554444445556667788999999999984 689999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
||++.|++||+||||++|||+-...+.++++++ +.|-++|||..+++..+|+++++|++|+|++. |+-+.|....
T Consensus 155 almmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~-g~a~~ft~p~ 232 (242)
T COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCFTEPQ 232 (242)
T ss_pred HHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee-cchhhccCcc
Confidence 999999999999999999999888888887765 67999999999999999999999999999975 7777776543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=308.84 Aligned_cols=213 Identities=26% Similarity=0.314 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+++.|++. +|+|+||+|.+|+++||+|+|||||||||++|+|. ..|..|.|.+.+.++..... ..
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--~~p~~G~v~i~g~~~~~~~~--~~----- 70 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGKILLNGKDITNLPP--EK----- 70 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEcCcCCh--hH-----
Confidence 4689999999875 89999999999999999999999999999999985 46888999999876642111 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+..+. ...+...++.+++.... .............+.++++.+|+. ...++++.+|||||+|||+||||
T Consensus 71 --~~i~~~~q~---~~~~~~~t~~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 71 --RDISYVPQN---YALFPHMTVYKNIAYGL-KKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred --cCEEEEeec---CccCCCccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHH
Confidence 011111111 11112334444443211 011011122345677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||+.++..+||+|++|++|+++.. |+++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 217 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV-GKPEEV 217 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999988764 57999999999999999999999999999864 666554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=316.34 Aligned_cols=217 Identities=20% Similarity=0.275 Sum_probs=162.3
Q ss_pred cEEEEeEEEEeCC------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-h
Q psy11936 146 DIKVENFSISAKG------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~ 218 (548)
+|+++||+++|++ +.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+..+..... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeccccccHH
Confidence 5899999999963 4699999999999999999999999999999999985 46788999998876632110 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.+.. ...++++... ...+..++.+++.... ............++..+++.+|+. ...++++.+|||||+
T Consensus 82 ~~~~-------~i~~v~q~~~--~~~~~~~v~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 82 DIRN-------KAGMVFQNPD--NQIVATIVEEDVAFGP-ENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQK 150 (280)
T ss_pred HHhh-------heEEEecChh--hhhccccHHHHHHhhH-hhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHH
Confidence 1111 1111111110 0011122333322110 000111122345678899999997 467899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++.. ||++++|++|+++.. |+.
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~-g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME-GTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEe-cCH
Confidence 9999999999999999999999999999999999998764 5799999999999976 999999999999865 666
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 229 ~~~ 231 (280)
T PRK13633 229 KEI 231 (280)
T ss_pred HHH
Confidence 554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=310.96 Aligned_cols=216 Identities=20% Similarity=0.296 Sum_probs=160.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-----CeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-----NIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-----~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|.. .|. .|.|.+.+.++..... .
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN--DIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CccccCCcccEEEECCEEccccccChH
Confidence 588999999999888999999999999999999999999999999999853 333 5899988876532111 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+.. ...++++.. ..+..++.+++.... .+..... ......+..++..+++.. ...++++.+||
T Consensus 82 ~~~~-------~i~~v~q~~----~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 149 (251)
T PRK14249 82 NLRK-------RVGMVFQQP----NPFPKSIFDNVAFGP-RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALS 149 (251)
T ss_pred Hhhc-------eEEEEecCC----ccCcCcHHHHHhhHH-HhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCC
Confidence 1110 111122111 111224444443111 1111111 112345667788888742 34678999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.+ |
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~-~ 228 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY-G 228 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe-C
Confidence 99999999999999999999999999999999999999999876 47999999999999999999999999999876 4
Q ss_pred CHHH
Q psy11936 373 NYSM 376 (548)
Q Consensus 373 ~y~~ 376 (548)
+.++
T Consensus 229 ~~~~ 232 (251)
T PRK14249 229 RTGE 232 (251)
T ss_pred CHHH
Confidence 4443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=314.51 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=154.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccC--chhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVAD--DLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~--~~~~ 219 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+.++... +...
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 469999999999988899999999999999999999999999999999995321 15789999988765321 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGG 296 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGG 296 (548)
+.. ...++++.. ..+..++.+++.... .+.... .....++.++++.+++. ....++++.+||||
T Consensus 92 ~~~-------~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 92 VRR-------RIGMVFQQP----NPFPKSIYENIAFGA-RINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGG 158 (269)
T ss_pred Hhh-------ceEEEccCC----ccchhhHHHHHhhhh-hhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence 110 111111111 011124444432111 111111 11234567788888774 23468889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++
T Consensus 159 ~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 159 QQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999999999876 36999999999999999999999996
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=314.58 Aligned_cols=219 Identities=24% Similarity=0.348 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+ .|.+|.|.+.+.++..... ..+
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 69999999999888899999999999999999999999999999999996321 1468999998877642111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++.... .+..... .....++.++++.+++.. ...++.+.+||||
T Consensus 105 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 105 RR-------RVGMVFQRP----NPFPKSIYENVVYGL-RLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred hc-------cEEEEecCC----ccCcccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 11 111111110 111224444442111 1111100 112345778889999853 3467889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY-GDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec-CCH
Confidence 999999999999999999999999999999999999999876 47999999999999999999999999999865 555
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 252 ~~~ 254 (272)
T PRK14236 252 DTL 254 (272)
T ss_pred HHH
Confidence 554
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=315.44 Aligned_cols=220 Identities=19% Similarity=0.319 Sum_probs=163.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+ .|.+|+|.+.+..+........
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~- 116 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV- 116 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH-
Confidence 469999999999888899999999999999999999999999999999986321 1578999998876532110000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. . .....++.+.. ..+..++.+++.... .+.... .....++.++++.+|+.. ...++++.+||||||
T Consensus 117 ~-~---~~~i~~v~q~~----~l~~~tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 117 A-L---RRRIGMVFQKP----NPFPKSIYDNVAYGL-KIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred h-h---hccEEEEecCC----ccCcCCHHHHHHHHH-HHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 0 0 00111111111 111224444443211 111111 123456788999999852 356888999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE-EEeCCEEEEEcCCHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII-HLDQQKLYYYKGNYS 375 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi-~L~~G~i~~~~g~y~ 375 (548)
|||+|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+++ +|++|+++.+ |+..
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~-g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF-DDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe-CCHH
Confidence 9999999999999999999999999999999999999877 4799999999999999999975 6799999875 5544
Q ss_pred H
Q psy11936 376 M 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 266 ~ 266 (285)
T PRK14254 266 K 266 (285)
T ss_pred H
Confidence 3
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=305.43 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|++++|+++||++.+++|+||++++|++.|++|+|||||||++|+|.|. ..|++|.|.++++++...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~---------- 69 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQE---------- 69 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhh----------
Confidence 58999999999999999999999999999999999999999999999974 578899999999876432
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+.+++++... .+..+++.+.+.. +..+.++...+...++..+|+++++.. ...+++.+||-|++|++.+..
T Consensus 70 -~~~rIGyLPEERG---Ly~k~tv~dql~y-la~LkGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 70 -IKNRIGYLPEERG---LYPKMTVEDQLKY-LAELKGMPKAEIQKKLQAWLERLEIVG-KKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred -hhhhcccChhhhc---cCccCcHHHHHHH-HHHhcCCcHHHHHHHHHHHHHhccccc-cccchHHHhhhhhhHHHHHHH
Confidence 1223444444332 2334566555532 345555666667788999999999985 468899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
+++++|++||||||+|||||.+.+.|.+.+.++ +.|||++||.|+-+.++||++++|+.|+.+.| |+....++
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~-G~v~~ir~ 219 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDIRR 219 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe-ccHHHHHH
Confidence 999999999999999999999999999987654 68999999999999999999999999999976 66655443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=328.60 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=158.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----hhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD----LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~----~~~~~ 221 (548)
+|++ ||+++|++..+ |+||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+..+.... .....
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--TRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccccccccchhh
Confidence 3677 99999987543 89999999999999999999999999999985 4678899999887653211 00000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+...++++. ...++..++.+++.... . .....++.++|+.+|+.. ..++++.+|||||||||
T Consensus 76 -------~~i~~v~q~---~~l~~~~tv~enl~~~~---~----~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRv 137 (352)
T PRK11144 76 -------RRIGYVFQD---ARLFPHYKVRGNLRYGM---A----KSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRV 137 (352)
T ss_pred -------CCEEEEcCC---cccCCCCcHHHHHHhhh---h----hhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHH
Confidence 111122211 11222345555543211 1 123457889999999974 67999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.++.
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999998888754 5799999999999999999999999999987643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=314.51 Aligned_cols=218 Identities=20% Similarity=0.311 Sum_probs=161.0
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-C--CCCeEEEEeceeeccCch--hH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-V--PPNIDILYCEQEVVADDL--TA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~--~~~g~I~~~~q~i~~~~~--~~ 219 (548)
.+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.... . |.+|+|.+.+..+..... ..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 369999999999988899999999999999999999999999999999995321 1 578999998876532111 11
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHhCCCC---hhhhhcccCCC
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS---AEPRARRILAGLGFS---RAMQDRATKNF 293 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~~~~L~~lgl~---~~~~~~~~~~L 293 (548)
+.. ...++++.. ..+..++.+++.... ...+... ....+.+++..+++. ....++++.+|
T Consensus 103 ~~~-------~i~~v~q~~----~~~~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 103 LRT-------NVGMVFQKP----NPFPKSIYDNVTYGP---KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred Hhh-------hEEEEecCC----ccccccHHHHHHHHH---HhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 110 111111111 111224444432211 1111111 133456677777542 13467889999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~- 247 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY- 247 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999876 47999999999999999999999999999876
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+++
T Consensus 248 g~~~~~ 253 (271)
T PRK14238 248 DDTDKI 253 (271)
T ss_pred CCHHHH
Confidence 555544
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=291.33 Aligned_cols=213 Identities=23% Similarity=0.318 Sum_probs=163.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|.+.+|.++|+..+. .++++|..||+++|+|||||||||||++|+|. ..|.+|.|.+++++........
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--~~P~~G~i~i~g~d~t~~~P~~------- 70 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF--ETPASGEILINGVDHTASPPAE------- 70 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhc--cCCCCceEEEcCeecCcCCccc-------
Confidence 668899999987543 56899999999999999999999999999985 5899999999999886543211
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+...++++. .+.+...++.+++..-.. -.+. ....++++..++..+|+.. ..++.|.+|||||||||+|||
T Consensus 71 --RPVSmlFQE---nNLFaHLtV~qNigLGl~--P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALAR 142 (231)
T COG3840 71 --RPVSMLFQE---NNLFAHLTVAQNIGLGLS--PGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALAR 142 (231)
T ss_pred --CChhhhhhc---cccchhhhhhhhhcccCC--cccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHH
Confidence 011122221 222333444443321000 0000 1234567889999999985 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
+|+.+-+|||||||+++|||.-+..+..++.+. +.|++||||..+.+.+++++++++++|+|.+ .|..++|..
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~-~g~~~~~~~ 219 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA-QGSTQELLS 219 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe-eccHHHHhc
Confidence 999999999999999999999888777776654 5799999999999999999999999999985 566666543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=349.78 Aligned_cols=223 Identities=19% Similarity=0.266 Sum_probs=167.1
Q ss_pred ccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 145 VDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
.+|+++||++.|+. ..+|+||||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--VESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCcEEEECCEECC
Confidence 46999999999962 4699999999999999999999999999999999985 3678999999988764
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.......... .....++++... .......++.+++..... +... .......++.++|+.+||.....++++.+
T Consensus 390 ~~~~~~~~~~----~~~i~~v~Q~~~-~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~ 463 (623)
T PRK10261 390 TLSPGKLQAL----RRDIQFIFQDPY-ASLDPRQTVGDSIMEPLR-VHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE 463 (623)
T ss_pred cCCHHHHHHh----cCCeEEEecCch-hhcCCCCCHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCccc
Confidence 3221111100 001122222110 011223445555432211 1111 01123457889999999975567999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ .+.|||+||||++++..+||+|++|++|+++
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998854 3679999999999999999999999999998
Q ss_pred EEcCCHHH
Q psy11936 369 YYKGNYSM 376 (548)
Q Consensus 369 ~~~g~y~~ 376 (548)
.. |..++
T Consensus 544 ~~-g~~~~ 550 (623)
T PRK10261 544 EI-GPRRA 550 (623)
T ss_pred Ee-cCHHH
Confidence 65 55444
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=312.24 Aligned_cols=219 Identities=23% Similarity=0.258 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCc------------------------eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q psy11936 146 DIKVENFSISAKGN------------------------DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP 201 (548)
Q Consensus 146 ~I~l~nls~~y~~~------------------------~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~ 201 (548)
.|+++||++-||.+ .-++|+||+|+.||++.|.|-||||||||+|||.++ ..|+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--iept 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEPT 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--CCCC
Confidence 36777888777642 137899999999999999999999999999999974 5789
Q ss_pred CeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCC
Q psy11936 202 NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGF 281 (548)
Q Consensus 202 ~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl 281 (548)
.|+|.+.+.++...+...+..+.. ....+++|.. ..++..++.++...- -++......+.++++.++|+.+||
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr---~~~sMVFQ~F---aLlPhrtVl~Nv~fG-Lev~Gv~~~er~~~a~~~l~~VgL 154 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRR---KKISMVFQSF---ALLPHRTVLENVAFG-LEVQGVPKAEREERALEALELVGL 154 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHh---hhhhhhhhhh---ccccchhHhhhhhcc-eeecCCCHHHHHHHHHHHHHHcCc
Confidence 999999999887666554443211 1223333322 123344444443211 112333344567789999999999
Q ss_pred ChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH----HHHHHHHHhhcCCeEEEEecCHHHHHhhcC
Q psy11936 282 SRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA----VIWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 282 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s----~~~L~~~L~~~~~TvIiVSHD~~~l~~vad 357 (548)
.. +.+++|++|||||||||.|||||+.+|+|||+|||+|+|||-- +..|.++-.++++||||||||++++.++.|
T Consensus 155 ~~-~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~ 233 (386)
T COG4175 155 EG-YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGD 233 (386)
T ss_pred hh-hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccc
Confidence 84 6799999999999999999999999999999999999999954 455555556678999999999999999999
Q ss_pred EEEEEeCCEEEEEcCCH
Q psy11936 358 EIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 358 rIi~L~~G~i~~~~g~y 374 (548)
||.+|.+|+|+..+.+-
T Consensus 234 rIaimkdG~ivQ~Gtp~ 250 (386)
T COG4175 234 RIAIMKDGEIVQVGTPE 250 (386)
T ss_pred eEEEecCCeEEEeCCHH
Confidence 99999999999875443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=306.06 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=153.5
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~ 229 (548)
||+++|+++.+ |+||+|.+ +++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... ..... ..
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~----~~ 75 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--EKPDGGTIVLNGTVLFDSRKKINLPPQ----QR 75 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEecccccchhhhhhH----hh
Confidence 89999998766 99999999 99999999999999999999985 467889999888765321100 00000 00
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
...++.+. .......++.+++.... ..........++.++++.+|+. ...++++.+|||||||||+|||||+.
T Consensus 76 ~i~~~~q~---~~~~~~~t~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQ---YALFPHLNVRENLAFGL---KRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecC---CccCCCCCHHHHHHHHH---hhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 11111111 11112334444442211 1111112345678899999997 45788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999988764 57999999999999999999999999998753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=313.20 Aligned_cols=219 Identities=19% Similarity=0.307 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc-CchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA-DDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~-~~~~~~~~~~ 224 (548)
+|.++|++++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.|.-... .+.......
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--~~~~~G~v~~~G~~~~~g~~~~~~~~~- 86 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--IEIYDSKIKVDGKVLYFGKDIFQIDAI- 86 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCcCceeEcCEEEECCcccccCCHH-
Confidence 58999999999999999999999999999999999999999999999985 35666655544321110 010000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD---SAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
.......+..+.. ......++.+++.... ...+.. ....++.++++.+|+.. ...++.+..|||||+
T Consensus 87 -~~~~~i~~~~q~~---~~~~~~tv~~nl~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 -KLRKEVGMVFQQP---NPFPHLSIYDNIAYPL---KSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQ 159 (257)
T ss_pred -HHhcceEEEccCC---ccCCCCcHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHH
Confidence 0001111222111 1122335555543211 111111 22356788999999852 346788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++.+++..
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999876 379999999999999999999999999999875443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=303.88 Aligned_cols=205 Identities=23% Similarity=0.284 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++++||+++|+. ++.++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~--~~~~---- 70 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--IEPASGSIKVNDQSHTGLA--PYQR---- 70 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccCC--hhcc----
Confidence 468999999974 57899999999999999999999999999999985 4678899999887653211 1100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++.+. ...+...+..+++..... .... ......++.++++.+|+. ...++.+.+|||||+|||+|||
T Consensus 71 ---~i~~v~q~---~~~~~~~t~~en~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~lar 141 (213)
T TIGR01277 71 ---PVSMLFQE---NNLFAHLTVRQNIGLGLH--PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALAR 141 (213)
T ss_pred ---ceEEEecc---CccCCCCcHHHHHHhHhh--ccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHH
Confidence 11111111 111223455555432111 0011 112345678899999997 4578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++...
T Consensus 142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999999999999999999998888764 57999999999999999999999999999865
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=310.73 Aligned_cols=219 Identities=19% Similarity=0.307 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-C--CCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-P--PNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~--~~g~I~~~~q~i~~~~~--~~~ 220 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. | .+|+|.+.++++..... ..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 589999999999888999999999999999999999999999999999963211 2 47999998876632110 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. ...++.+.. ..+..++.+++..... ... ........++.+++..+|+.. ...++++.+||||
T Consensus 87 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 87 RR-------QIGMVFQRP----NPFPMSIYENVAYGVR-ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred hh-------heEEEeccc----ccCCccHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 10 111111111 1122344444422111 110 011122356778899998842 3567889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe-----CCEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD-----QQKLYY 369 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~-----~G~i~~ 369 (548)
|+|||+|||||+.+|++|||||||++||+.+..++.++|..+ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999999999999875 4799999999999999999999998 599987
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+..++
T Consensus 235 ~-~~~~~~ 241 (259)
T PRK14260 235 F-GVTTQI 241 (259)
T ss_pred e-CCHHHH
Confidence 5 554443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=311.13 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=151.3
Q ss_pred EEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 154 ~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+.|+.+++|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.... .... ....+
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~~~~~~-~~~~-------~~i~~ 98 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGLVPWKRR-KKFL-------RRIGV 98 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEccccc-hhhc-------ccEEE
Confidence 567778899999999999999999999999999999999985 4678899998876532111 0000 00111
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
+.+ .........++.+++... ..+..........++..+++.+|+.. ..++++.+|||||+||++|||||+.+|+|
T Consensus 99 ~~~--~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l 174 (236)
T cd03267 99 VFG--QKTQLWWDLPVIDSFYLL-AAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEI 174 (236)
T ss_pred EcC--CccccCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 110 000111223444443221 11111111223446778899999974 56889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||++||+.++.+|.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 175 LFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999876 4799999999999999999999999999875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=302.28 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=150.3
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+............ .
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~---~ 75 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--EKFDSGQVYLNGKETPPLNSKKASKFR---R 75 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEccccchhhHHHHH---H
Confidence 46899999988999999999999999999999999999999999985 467889999988765311110000000 0
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
+...+..+.. ......++.+++.... ............++.++++.+|+. ...++++.+|||||+||++|||||+
T Consensus 76 ~~i~~~~q~~---~~~~~~t~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 76 EKLGYLFQNF---ALIENETVEENLDLGL-KYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred hCeeEEecch---hhccCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 0111111111 1112234444443211 111111122345678899999996 4568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++ .+||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999999999875 57999999999987 479999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=308.26 Aligned_cols=214 Identities=28% Similarity=0.358 Sum_probs=163.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+..+..... ..
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~i~g~~~~~~~~--~~----- 71 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--EQPDSGRIRLNGQDATRVHA--RD----- 71 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEEcCcCCh--hh-----
Confidence 4689999999988999999999999999999999999999999999985 46788999988876532111 00
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++.. ..+...+..+++.... .............+.++++.+++. ...++.+.+|||||+||++||||
T Consensus 72 --~~i~~~~q~~---~~~~~~t~~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 72 --RKIGFVFQHY---ALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred --cCEEEEecCh---hhccCCcHHHHHHhHH-HhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHH
Confidence 0111111111 1111234444442111 111111112245677899999997 46789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++..+||+|++|++|+++.. |+.+.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~~ 218 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI-GSPDEV 218 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999999764 57999999999999999999999999999865 555544
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=304.10 Aligned_cols=199 Identities=22% Similarity=0.286 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~i~~~~---~~---- 81 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--LHVESGQIQIDGKTATRGD---RS---- 81 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCCeeEEECCEEccchh---hh----
Confidence 58999999999988899999999999999999999999999999999985 4678899999887653210 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. .......+..+++.... ..........+.+++..+|+.. ..++++.+|||||+|||+|||
T Consensus 82 ---~~i~~~~q~---~~~~~~~t~~e~l~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 ---RFMAYLGHL---PGLKADLSTLENLHFLC----GLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred ---hceEEeecC---cccccCCcHHHHHHHHH----HhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHH
Confidence 001111111 01111224444432211 1112234556788999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||++++|+.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999999765 68999999999999999999999863
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=313.69 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++.+.......+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEECCcCCHHHHhc
Confidence 5899999999974 3599999999999999999999999999999999985 4688899999888764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
...++.+... ...+..++.+++..... ...........++..+++.+|+. ...++++.+|||||+|||+
T Consensus 82 -------~i~~v~q~~~--~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 82 -------KIGMVFQNPD--NQFVGATVEDDVAFGME-NQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVA 150 (277)
T ss_pred -------ceEEEEECHH--HhhccCCHHHHHHhhHH-HcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHH
Confidence 1111111110 01223344444422111 00111112235678899999996 4678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++.+|.++|.++ +.|||+||||++++. .||+|++|++|+++.. |+.+++
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~~ 227 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKE-AAPSEL 227 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999999999999999999988654 679999999999997 5999999999999865 565554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=310.28 Aligned_cols=215 Identities=20% Similarity=0.309 Sum_probs=160.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++||+++| ++.+|+|+||+|.+|+++||+|+|||||||||++|+|.. .| .+|+|.+.+.++..... ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~~~~~G~i~~~g~~i~~~~~--~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL--PAGVRQTAGRVLLDGKPVAPCAL--RG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCCcCCEEEECCeecccccc--cc
Confidence 58999999999 668999999999999999999999999999999999853 34 78999988876531100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhcccCCCCHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDRATKNFSGGWRM 299 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSGGqkq 299 (548)
....++++.... ......+..+++.. .+...+......++.++++.+|+... ..++.+.+|||||+|
T Consensus 79 -------~~i~~v~q~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~q 147 (254)
T PRK10418 79 -------RKIATIMQNPRS-AFNPLHTMHTHARE---TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQ 147 (254)
T ss_pred -------ceEEEEecCCcc-ccCccccHHHHHHH---HHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHH
Confidence 001111111000 00001122222211 11112222234678889999999742 468899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence 999999999999999999999999999999988888764 5799999999999999999999999999985 46655
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 227 ~~ 228 (254)
T PRK10418 227 TL 228 (254)
T ss_pred HH
Confidence 54
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=301.84 Aligned_cols=199 Identities=22% Similarity=0.317 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|.|.+.+..+.... ....
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~v~~~g~~~~~~~-~~~~---- 73 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--ARPDAGEVLWQGEPIRRQR-DEYH---- 73 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccch-HHhh----
Confidence 47899999999988899999999999999999999999999999999985 4678899999887653211 0000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. .......++.+++.... .+ .+ .....++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 74 ---~~~~~~~~~---~~~~~~~tv~e~l~~~~-~~--~~-~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 ---QDLLYLGHQ---PGIKTELTALENLRFYQ-RL--HG-PGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALAR 142 (204)
T ss_pred ---hheEEeCCc---cccCcCCcHHHHHHHHH-Hh--cC-ccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHH
Confidence 011111111 01112235555543211 11 11 134567889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||..+++.+..|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999999876 579999999999999977888877
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=310.49 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchh-HH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLT-AV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~-~~ 220 (548)
..|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|...+.| .+|+|.+.++.+...+.. ..
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 35899999999998899999999999999999999999999999999999643223 589999887654311000 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD-SAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
.. . .....+..+.. ..+..++.+++..... ....... ..+.++..++..+++.. ...++.+.+||||
T Consensus 95 ~~-~---~~~i~~~~q~~----~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 95 IE-V---RMRISMVFQKP----NPFPKSIFENVAYGLR-IRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGG 165 (265)
T ss_pred HH-H---hccEEEEccCC----cCCcchHHHHHHhHHH-HcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHH
Confidence 00 0 00111111110 1112244444421111 1111111 12356677888887742 3457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++.++...
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 369999999999999999999999999999875443
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
+.
T Consensus 246 ~~ 247 (265)
T PRK14252 246 TI 247 (265)
T ss_pred HH
Confidence 33
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=305.58 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+...+...+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCeehHhcCHHHHhhcE
Confidence 468999999963 5799999999999999999999999999999999985 367889999988765322211111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHH---------HHHHHHhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR---------ARRILAGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~~~L~~l--gl~~~~~~~~~~~L 293 (548)
.++++.. ..+..++.+++.. ......... +.+++..+ ++.. ..++++.+|
T Consensus 79 -------~~~~q~~----~~~~~tv~~nl~~-------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~L 139 (237)
T cd03252 79 -------GVVLQEN----VLFNRSIRDNIAL-------ADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGL 139 (237)
T ss_pred -------EEEcCCc----hhccchHHHHhhc-------cCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcC
Confidence 1111110 0111222222210 000000111 22344444 4442 357789999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||++|||++++. .||+|++|++|+++.+
T Consensus 140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~- 217 (237)
T cd03252 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQ- 217 (237)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999875 479999999999996 5999999999999865
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|+.+++
T Consensus 218 ~~~~~~ 223 (237)
T cd03252 218 GSHDEL 223 (237)
T ss_pred cCHHHH
Confidence 665554
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=308.20 Aligned_cols=184 Identities=27% Similarity=0.384 Sum_probs=160.1
Q ss_pred ccEEEEeEEEEeCC---------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC
Q psy11936 145 VDIKVENFSISAKG---------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD 215 (548)
Q Consensus 145 ~~I~l~nls~~y~~---------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~ 215 (548)
++++++||++.|.- ..+++||||+|.+||.+||||.||||||||-|+|+|+ ..|++|+|.|.++++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhhc
Confidence 36899999999942 2689999999999999999999999999999999974 578999999998865321
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. .....+++.++|+.+|+..+..++++++|||
T Consensus 81 ~------------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 81 S------------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred c------------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 1 0112346778999999998899999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+||++|||||+.+|+++++|||||+||...+..+.++|.++ +.|.|+||||+..+..+||||++|..|+|++.+
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence 9999999999999999999999999999999988888888764 679999999999999999999999999999986
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
..-+.|.
T Consensus 193 ~~~~~~~ 199 (268)
T COG4608 193 PTEEVFS 199 (268)
T ss_pred CHHHHhh
Confidence 5555553
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=306.66 Aligned_cols=217 Identities=20% Similarity=0.307 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~~ 220 (548)
.|+++||++.|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|..-.. |.+|+|.++++.+.... ....
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 588999999999888999999999999999999999999999999999853211 37899999988764211 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.. ...++++.. ..+..+..+++.... ...+. .....++.++++.+|+.. ...++++.+||
T Consensus 83 ~~-------~i~~~~q~~----~~~~~t~~~nl~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 148 (250)
T PRK14266 83 RK-------KVGMVFQKP----NPFPKSIFDNVAYGL---RIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLS 148 (250)
T ss_pred hh-------heEEEecCC----ccCcchHHHHHHhHH---hhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCC
Confidence 11 111111111 112224444432211 11111 113456778899998853 34578899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||+.++..+||++++|++|++... |
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~-g 227 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES-G 227 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe-C
Confidence 99999999999999999999999999999999999999999865 47999999999999999999999999999865 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+.+
T Consensus 228 ~~~~~ 232 (250)
T PRK14266 228 LTDQI 232 (250)
T ss_pred CHHHH
Confidence 66554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=302.61 Aligned_cols=209 Identities=29% Similarity=0.387 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
|+++||++.|++ ..+|+++||++.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++.+..........
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--RSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEhHhcCHhHHHH
Confidence 789999999975 6799999999999999999999999999999999984 4678899998887663221110000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
. .....++++.. ......+..+++.... .+. .........++.++++.+|+. ...++++.+|||||+||+
T Consensus 80 ~----~~~i~~~~q~~---~~~~~~t~~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 80 L----RRNIGYIFQAH---NLLGFLTARQNVQMAL-ELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred H----HhheEEEcCCh---hhcCCCCHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHH
Confidence 0 01111111111 1112234444443211 111 011122345688999999996 466889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||+++. .+||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999888888654 58999999999965 69999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=346.52 Aligned_cols=207 Identities=28% Similarity=0.420 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+..-..
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--l~p~~G~I~~~~~~~ig--------- 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--LQPSSGTVFRSAKVRMA--------- 575 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCceEEECCceeEE---------
Confidence 46999999999964 5699999999999999999999999999999999985 35677777654321000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
++.+.. . ...+...+..... ..... .....++..+|..+||.....++++.+|||||||||+|
T Consensus 576 ---------yv~Q~~-~----~~l~~~~~~~~~~--~~~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaL 638 (718)
T PLN03073 576 ---------VFSQHH-V----DGLDLSSNPLLYM--MRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 638 (718)
T ss_pred ---------EEeccc-c----ccCCcchhHHHHH--HHhcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHH
Confidence 000000 0 0000000000000 00011 12346678899999998556788999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
||||+.+|+||||||||||||+.++.+|.+.|..+++|||+||||++++..+||+|++|++|+++.+.|+|+.|.+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999998888999999999999999999999999999988999998854
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=308.77 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
-+++||+++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+. |..|+|.+.++.+........ .
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~-~- 83 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV-L- 83 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH-H-
Confidence 35889999999889999999999999999999999999999999999963211 468999998876532110000 0
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCCh---hhhhcccCCCCHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSR---AMQDRATKNFSGGWR 298 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGGqk 298 (548)
. .....++++.. ..+..++.+++.... .+..... ......+.++++.+|+.. ...++.+.+|||||+
T Consensus 84 ~---~~~i~~v~q~~----~~~~~tv~~ni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 84 L---RAKVGMVFQKP----NPFPKSIYDNVAYGP-KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred H---hhhEEEEecCc----ccccCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 0 00111111111 111224444432111 1111100 112345678899999863 245778999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY-NTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe-CCHHH
Confidence 9999999999999999999999999999999999999765 47999999999999999999999999999865 55444
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 3
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=309.57 Aligned_cols=217 Identities=19% Similarity=0.288 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CCeEEEEeceeeccCch--h
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP-----PNIDILYCEQEVVADDL--T 218 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-----~~g~I~~~~q~i~~~~~--~ 218 (548)
.|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. .| .+|.|.++++++..... .
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~--~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN--ELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc--CCCCCccccceEEECCEEhhccccchH
Confidence 589999999998888999999999999999999999999999999999863 23 26888888876532110 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCCh---hhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSR---AMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LS 294 (548)
.+.. ...++.+.. . .+..++.+++.... ..... .......++..+++.+++.. ...++++.+||
T Consensus 85 ~~~~-------~i~~~~q~~---~-l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 152 (261)
T PRK14258 85 RLRR-------QVSMVHPKP---N-LFPMSVYDNVAYGV-KIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS 152 (261)
T ss_pred Hhhc-------cEEEEecCC---c-cCcccHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 1110 011111110 1 11234444432211 01111 01112345778899998742 34678899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC-----C
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ-----Q 365 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~-----G 365 (548)
|||+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++ |
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCc
Confidence 99999999999999999999999999999999999999988763 67999999999999999999999999 9
Q ss_pred EEEEEcCCHHHH
Q psy11936 366 KLYYYKGNYSMF 377 (548)
Q Consensus 366 ~i~~~~g~y~~f 377 (548)
+++.. |+.++.
T Consensus 233 ~i~~~-~~~~~~ 243 (261)
T PRK14258 233 QLVEF-GLTKKI 243 (261)
T ss_pred eEEEe-CCHHHH
Confidence 99865 555443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=331.58 Aligned_cols=299 Identities=20% Similarity=0.211 Sum_probs=214.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+|+|++..+|++|||+|.+||++||+|.||||||||+|+|+|. ..|++|+|.+.++.+...+......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--~~p~~G~I~~~G~~~~~~sp~~A~~--- 82 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--YPPDSGEILIDGKPVAFSSPRDALA--- 82 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--ccCCCceEEECCEEccCCCHHHHHh---
Confidence 58899999999999999999999999999999999999999999999984 5799999999999886654332111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.|. .+..+++++.+|+..-.+. +..++......++.++|..+|+... .+.++.+||+||||.|+
T Consensus 83 ---~GI~~V~QE---l~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 83 ---AGIATVHQE---LSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVE 155 (500)
T ss_pred ---CCcEEEeec---hhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHH
Confidence 001111111 1123345555554211100 0111223456778899999999633 78899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|||||..+++||||||||++|+....+.|.++++++ +.+||+|||.++++.++||||.+|.+|+++.....-.++..
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~ 235 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH
Confidence 999999999999999999999999999888888765 67999999999999999999999999998753210111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC--
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP-- 457 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~-- 457 (548)
.++-++ +.- + + +.-.||
T Consensus 236 -----------------~~lv~~----------------------------MvG---r----~---------~~~~~~~~ 254 (500)
T COG1129 236 -----------------DELVRL----------------------------MVG---R----E---------LEDLFPEP 254 (500)
T ss_pred -----------------HHHHHH----------------------------hhC---c----c---------hhhhcccc
Confidence 000000 000 0 0 000111
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeec
Q psy11936 458 DPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGL 522 (548)
Q Consensus 458 ~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~ 522 (548)
.....+.+++++++++..- .|.|+||.. +|+-.=|.|= .+.|+++|+|..++.+|+|+..
T Consensus 255 ~~~~~~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~ 319 (500)
T COG1129 255 PEEGIGEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319 (500)
T ss_pred cccCCCCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEEC
Confidence 1113467899999988642 688999874 7777666552 5678899999999999987653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=290.13 Aligned_cols=159 Identities=25% Similarity=0.314 Sum_probs=134.0
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++++|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|.|.+.++.+...+...
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~------- 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--YKPDSGEILVDGKEVSFASPRD------- 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCcCCHHH-------
Confidence 4689999999988999999999999999999999999999999999985 4678899998877553211000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.. -..+++ +.+|||||+||++||||
T Consensus 72 --------------------------------~~---------------~~~i~~--------~~qLS~G~~qrl~lara 96 (163)
T cd03216 72 --------------------------------AR---------------RAGIAM--------VYQLSVGERQMVEIARA 96 (163)
T ss_pred --------------------------------HH---------------hcCeEE--------EEecCHHHHHHHHHHHH
Confidence 00 000111 12299999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|+.+|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999766 5799999999999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=308.39 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.....
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~~~i~----------- 70 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGKLRIG----------- 70 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCccCEE-----------
Confidence 58999999999988899999999999999999999999999999999985 46778888775421000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
++++...+.. ....+..+++ . ........++..+++.+|+.. ..++++.+|||||+|||+|||
T Consensus 71 -------~v~q~~~~~~-~l~~~~~~~~-------~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 71 -------YVPQKLYLDT-TLPLTVNRFL-------R-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred -------Eecccccccc-ccChhHHHHH-------h-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHH
Confidence 0000000000 0000111110 0 011112356778999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++ +++. .|+.+++
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~~~~~ 207 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGTPEVV 207 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCCHHHH
Confidence 999999999999999999999999999988654 67999999999999999999999965 6665 4665543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=304.44 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=152.7
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......+...+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--YDVDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--ccCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 4689999999875 799999999999999999999999999999999985 367889999988765322111111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH---------HHHHHHHhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP---------RARRILAGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---------~~~~~L~~l--gl~~~~~~~~~~~L 293 (548)
.++.+.. ..+..++.+++.. ........ .+.+++..+ ++.. ..++++.+|
T Consensus 79 -------~~~~q~~----~~~~~tv~enl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~L 139 (234)
T cd03251 79 -------GLVSQDV----FLFNDTVAENIAY-------GRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKL 139 (234)
T ss_pred -------EEeCCCC----eeccccHHHHhhc-------cCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcC
Confidence 1111110 0112233332211 00000111 123445554 5543 356788999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.. ||+|++|++|+++. .
T Consensus 140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~ 217 (234)
T cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-R 217 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-e
Confidence 999999999999999999999999999999999999999999875 5799999999999976 99999999999985 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+.+.+.
T Consensus 218 ~~~~~~~ 224 (234)
T cd03251 218 GTHEELL 224 (234)
T ss_pred CCHHHHH
Confidence 6666553
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=311.09 Aligned_cols=221 Identities=20% Similarity=0.311 Sum_probs=161.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|+++.+|+++||+|.+|++++|+|+|||||||||++|+|...+.| ..|.|.+.++++........
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~- 97 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV- 97 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH-
Confidence 46999999999998889999999999999999999999999999999998632222 58999998876632111000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC---hhhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS---RAMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~---~~~~~~~~~~LSGGqk 298 (548)
. . .....++++.. ..+..++.+++.... ..... .......+..+++.+++. ....++++.+|||||+
T Consensus 98 ~-~---~~~i~~v~q~~----~l~~~tv~~nl~~~~-~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 98 K-L---RRQVGMVFQRP----NPFPKSIYENIAFAP-RANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQ 167 (274)
T ss_pred H-H---hhcEEEEccCC----ccccccHHHHHHhHH-HhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHH
Confidence 0 0 00111111111 011123344332110 00000 011234456778888874 2345788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe---------CCEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD---------QQKL 367 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~---------~G~i 367 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999876 4799999999999999999999998 7999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.+ |+-+++
T Consensus 248 ~~~-g~~~~~ 256 (274)
T PRK14265 248 VEF-SPTEQM 256 (274)
T ss_pred EEe-CCHHHH
Confidence 875 555443
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=303.08 Aligned_cols=207 Identities=26% Similarity=0.342 Sum_probs=151.3
Q ss_pred cEEEEeEEEEeCC-------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece----eecc
Q psy11936 146 DIKVENFSISAKG-------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ----EVVA 214 (548)
Q Consensus 146 ~I~l~nls~~y~~-------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q----~i~~ 214 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+. ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--YLPDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEEEecCCCccchhh
Confidence 3789999999963 4799999999999999999999999999999999985 4577899988631 2211
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.+........ .....++.+.. ......++.+++... +...+. .....++.++++.+|+.....++++.+
T Consensus 79 ~~~~~~~~~~---~~~i~~~~q~~---~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 79 ASPREVLEVR---RKTIGYVSQFL---RVIPRVSALEVVAEP---LLERGVPREAARARARELLARLNIPERLWHLPPAT 149 (224)
T ss_pred cCHHHHHHHH---hcceEEEeccc---ccCCCccHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCccc
Confidence 1111000000 00111222111 112223444443321 111121 123457788999999975455789999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
|||||+||++|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||+|+.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999998765 5799999999999999999999873
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=310.05 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=161.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCc--hhH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADD--LTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~--~~~ 219 (548)
.+|+++||+++|++..+|+|+||+|.+|+++||+|+|||||||||++|+|...+. |.+|+|.+.+..+.... ...
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 3699999999999889999999999999999999999999999999999853211 36899999887653211 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh---hhhhcccCCCCHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR---AMQDRATKNFSGG 296 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---~~~~~~~~~LSGG 296 (548)
+.. ...++.+.. ..+..++.+++..... .... ......++..++..+++.. ...++.+.+||||
T Consensus 89 ~~~-------~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 155 (264)
T PRK14243 89 VRR-------RIGMVFQKP----NPFPKSIYDNIAYGAR-INGY-KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG 155 (264)
T ss_pred Hhh-------hEEEEccCC----ccccccHHHHHHhhhh-hcCc-chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence 110 111111110 0111234444321110 0000 1122345667788888742 2457889999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe---------CC
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD---------QQ 365 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~---------~G 365 (548)
|+|||+|||||+.+|+||||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|+ +|
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g 235 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYG 235 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999876 3799999999999999999999998 79
Q ss_pred EEEEEcCCHHHH
Q psy11936 366 KLYYYKGNYSMF 377 (548)
Q Consensus 366 ~i~~~~g~y~~f 377 (548)
+++.. |...++
T Consensus 236 ~i~~~-~~~~~~ 246 (264)
T PRK14243 236 YLVEF-DRTEKI 246 (264)
T ss_pred eEEEe-CCHHHH
Confidence 99865 555443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.38 Aligned_cols=209 Identities=23% Similarity=0.289 Sum_probs=158.0
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~ 229 (548)
||+++|++..+ ++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .... ...
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--~~p~~G~I~~~g~~i~~~~~~~~~~~----~~~ 75 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--TRPDEGEIVLNGRTLFDSRKGIFLPP----EKR 75 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECccCccccccch----hhC
Confidence 89999987654 99999999999999999999999999999985 467889999988776321100 0000 000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
...++++. ...+...++.+++.... ..........++.++|+.+||. ...++++.+|||||||||+|||||+.
T Consensus 76 ~i~~v~q~---~~l~~~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 76 RIGYVFQE---ARLFPHLSVRGNLRYGM---KRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred CeEEEecC---CccCCCCcHHHHHHHHh---hccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 11111111 11222345555553211 1111122345688999999997 46789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 217 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA-GPIA 217 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE-CCHH
Confidence 99999999999999999999988888764 57999999999999999999999999999865 5543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=302.73 Aligned_cols=209 Identities=23% Similarity=0.351 Sum_probs=148.3
Q ss_pred EEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
|+++|+++.|++ .++|+|+||+|++|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++...+...+...
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--CCCCCCEEEECCEehhhcCHHHHHhh
Confidence 468999999964 4699999999999999999999999999999999985 46788999998876532211111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHhC--CCChhhhhcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR---------ILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---------~L~~l--gl~~~~~~~~~~~ 292 (548)
+ .++.+... .+..++.+++. ..........+.. ++..+ ++.. ..++++.+
T Consensus 79 i-------~~~~q~~~----~~~~tv~e~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 139 (238)
T cd03249 79 I-------GLVSQEPV----LFDGTIAENIR-------YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT-LVGERGSQ 139 (238)
T ss_pred E-------EEECCchh----hhhhhHHHHhh-------ccCCCCCHHHHHHHHHHcChHHHHHhhccccce-eeccCCcc
Confidence 1 11111100 00112222211 0000001111222 22333 3332 34667899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||+|||||+.+|++|||||||++||+.++.++.++|..+ +.|||++|||++++. +||+|++|++|+++.
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~- 217 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE- 217 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999999999765 479999999999997 899999999999975
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
.|+.+.+.
T Consensus 218 ~~~~~~~~ 225 (238)
T cd03249 218 QGTHDELM 225 (238)
T ss_pred eCCHHHHh
Confidence 46655543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=327.65 Aligned_cols=204 Identities=18% Similarity=0.261 Sum_probs=157.5
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+++++||+++|++ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+...... ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--l~P~sGeI~I~G~~~~i~-~~--- 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--TMPNKGTVDIKGSAALIA-IS--- 93 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--CCCCceEEEECCEeeeEE-ec---
Confidence 36899999999976 4699999999999999999999999999999999985 467889998877542100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
. ......++.+++.... .+..........++..+++.+|+.. ..++++.+|||||||||
T Consensus 94 ---------~----------~l~~~lTV~EnL~l~~-~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRV 152 (549)
T PRK13545 94 ---------S----------GLNGQLTGIENIELKG-LMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRL 152 (549)
T ss_pred ---------c----------ccCCCCcHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHH
Confidence 0 0001122333321100 0011111112345667899999974 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.++
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~-G~~~e 229 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY-GDIKE 229 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 9999999999999999999999999999999988765 57999999999999999999999999999876 44433
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=340.12 Aligned_cols=223 Identities=22% Similarity=0.349 Sum_probs=165.5
Q ss_pred ccEEEEeEEEEeC-----------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 145 VDIKVENFSISAK-----------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~-----------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
.+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|.. |.+|+|.+.+.++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI---NSQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC---CCCcEEEECCEEcc
Confidence 3699999999995 357999999999999999999999999999999999852 47899999887664
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
..+...... . .....++++... .......++.+++..... +.. ........++.++|+.+|+.....++++.
T Consensus 351 ~~~~~~~~~-~---~~~i~~v~q~~~-~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 351 NLNRRQLLP-V---RHRIQVVFQDPN-SSLNPRLNVLQIIEEGLR-VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred ccchhhHHH-h---hhceEEEEeCch-hhcCCcccHHHHHHHHHH-hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 221111100 0 001111111110 011223455555432111 110 11112345688999999997445789999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999998753 57999999999999999999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.. |+.+++
T Consensus 505 ~~~-~~~~~~ 513 (529)
T PRK15134 505 VEQ-GDCERV 513 (529)
T ss_pred EEE-cCHHHH
Confidence 864 555544
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=312.89 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=157.0
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+... ..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~----~~--- 76 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQA----LQ--- 76 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEhHHh----hc---
Confidence 489999999995 57899999999999999999999999999999999985 467889999888754210 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.....++++...+. ..+.....+++... ........ ......++.++++.+|+.. ..++++.+|||||+|||
T Consensus 77 ---~~~i~~v~q~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 77 ---KNLVAYVPQSEEVD-WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRV 151 (272)
T ss_pred ---cceEEEeccccccc-cCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHH
Confidence 00011111110000 00001111111000 00000000 1112456778899999974 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+++++ +|+++.. |+.++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~-g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS-GPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee-cCHHh
Confidence 9999999999999999999999999999999999765 579999999999999999999877 8999865 55544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=292.97 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|||++..++.+|+++||++.+||+++|+||||||||||||.|+|. ..|.+|.+.+++..+.......+.
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--l~p~~G~v~~~g~~l~~~~~~~lA---- 74 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEELA---- 74 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--cCCCCCeEeeCCcChhhCCHHHHH----
Confidence 48899999999999999999999999999999999999999999999985 468899999999877544333221
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+...++++... ..|..++.+.+.. ..+. ..+.. +....++.+|...++.. +..+...+|||||||||.
T Consensus 75 ---~~raVlpQ~s~---laFpFtv~eVV~m--Gr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVq 145 (259)
T COG4559 75 ---RHRAVLPQNSS---LAFPFTVQEVVQM--GRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQ 145 (259)
T ss_pred ---HHhhhcccCcc---cccceEHHHHHHh--cccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHH
Confidence 12223333221 2233344332210 0000 11122 23344788999999874 678888999999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 303 LARALYI------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 303 LAraL~~------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||+|++ ++.+|+||||||+||+..+..+.++.+++ ++.|+.|-||++.+..+||||++|.+|+++..+.+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9999976 44599999999999999988888887776 57999999999999999999999999999987666
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
.+.+.
T Consensus 226 ~~vlt 230 (259)
T COG4559 226 QDVLT 230 (259)
T ss_pred HHhcC
Confidence 55543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=309.94 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=157.1
Q ss_pred cEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++| ++..+|+|+||+|.+|+++||+|+|||||||||++|+|.. +.+|.|.+++.++...+...+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~---~~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---CCCcEEEECCEEhhhCCHHHHhhh
Confidence 37899999999 4567999999999999999999999999999999999863 367999998877643222111111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC-----------
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN----------- 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----------- 292 (548)
..++++.. ..+..++.+++. ..+. ....++.++++.+|+.. ..++.+..
T Consensus 79 -------i~~v~q~~----~lf~~tv~~nl~-------~~~~-~~~~~~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~ 138 (275)
T cd03289 79 -------FGVIPQKV----FIFSGTFRKNLD-------PYGK-WSDEEIWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCV 138 (275)
T ss_pred -------EEEECCCc----ccchhhHHHHhh-------hccC-CCHHHHHHHHHHcCCHH-HHHhCcccccceecCCCCC
Confidence 11111110 111223333321 1111 23456778899999974 46777766
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||+|||||+.+|+||||||||++||+.+...+.+.|... ++|||+||||++++.. ||+|++|++|+++.+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~ 217 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY 217 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec
Confidence 9999999999999999999999999999999999999999999864 5799999999999875 999999999999987
Q ss_pred cCCHH
Q psy11936 371 KGNYS 375 (548)
Q Consensus 371 ~g~y~ 375 (548)
+.+.+
T Consensus 218 g~~~~ 222 (275)
T cd03289 218 DSIQK 222 (275)
T ss_pred CCHHH
Confidence 54433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=285.91 Aligned_cols=213 Identities=24% Similarity=0.338 Sum_probs=164.5
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++++++..+. -.||++|+|.|.+||.++|||||||||||||-+++|+ ..|.+|.|.+.++.+...+.....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--d~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--DDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--CCCCCceEEEcCcchhhcCHHHHH
Confidence 5888899888754 3699999999999999999999999999999999985 588999999999988654433221
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+.. ...+++++.. ...++++..+++.... .+..-+.......+..+|..+|+.. .+..+|.+|||||+|||
T Consensus 84 ~~R~---~~vGfVFQSF---~Lip~ltAlENV~lPl-eL~ge~~~~~~~~A~~lL~~vGLg~-Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 84 ALRA---RHVGFVFQSF---HLIPNLTALENVALPL-ELRGESSADSRAGAKALLEAVGLGK-RLTHYPAQLSGGEQQRV 155 (228)
T ss_pred Hhhc---cceeEEEEee---eccccchhhhhccchh-hhcCCccccHHHHHHHHHHHhCccc-ccccCccccCchHHHHH
Confidence 1110 1112222211 1123445555543322 2332234556677999999999985 56899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+..|+||+.||||.+||..+-..+.++|- +.+.|+|+||||...+.+ |+|++.|.+|+|+.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 99999999999999999999999998877777764 456899999999999876 99999999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=339.30 Aligned_cols=222 Identities=15% Similarity=0.185 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC---CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAK---GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~---~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+ +..+|+|+||+|.+|+++||+|+|||||||||++|+|. .. |.+|+|.+.++++.......
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~~~G~i~~~g~~~~~~~~~~-- 334 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--YPGRWEGEIFIDGKPVKIRNPQQ-- 334 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCcEEEECCEECCCCCHHH--
Confidence 699999999993 45799999999999999999999999999999999985 24 47899999887763221110
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH-HHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY-EELKAI---GADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
. . .....++.+...........++.+++.... ..+... .......++.++|+.+|+.....++++.+|||||
T Consensus 335 ~-~---~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 335 A-I---AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred H-H---HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 0 0 001122222110001122344555443211 011100 1111235688999999996335689999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||++++|++|+++.. |+.
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~-~~~ 489 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD-LIN 489 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-ecc
Confidence 99999999999999999999999999999999988887654 67999999999999999999999999999754 444
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 490 ~~ 491 (506)
T PRK13549 490 HN 491 (506)
T ss_pred cc
Confidence 44
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=298.07 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ..+.
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--SPPLAGRVLLNGGPLDFQR-DSIA----- 72 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEeccccc-HHhh-----
Confidence 4689999999988999999999999999999999999999999999985 4678899998877653211 1000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+. ....+..++.+++... .......++.++++.+|+.. ..++++.+|||||+||++||||
T Consensus 73 --~~i~~~~q~---~~~~~~~tv~e~l~~~-------~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~lara 139 (201)
T cd03231 73 --RGLLYLGHA---PGIKTTLSVLENLRFW-------HADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARL 139 (201)
T ss_pred --hheEEeccc---cccCCCcCHHHHHHhh-------cccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHH
Confidence 111111111 1111233444443211 01123567888999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||...+..+|++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999999765 679999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=299.89 Aligned_cols=209 Identities=23% Similarity=0.375 Sum_probs=149.3
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++|++++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...+...+...+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 46899999996 57799999999999999999999999999999999985 4678899998887654322111111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHhC--CCChhhhhcccCCCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR---------ILAGL--GFSRAMQDRATKNFS 294 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---------~L~~l--gl~~~~~~~~~~~LS 294 (548)
+..+.. ..+..++.+++.. .........+.. .+..+ |+.. ..++++.+||
T Consensus 79 -------~~~q~~----~~~~~tv~~nl~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~LS 139 (236)
T cd03253 79 -------VVPQDT----VLFNDTIGYNIRY-------GRPDATDEEVIEAAKAAQIHDKIMRFPDGYDT-IVGERGLKLS 139 (236)
T ss_pred -------EECCCC----hhhcchHHHHHhh-------cCCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCC
Confidence 111100 0111222222211 000011111222 23333 3332 3456788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|..+ +.|||+|||+.+++.. ||++++|++|+++. .|
T Consensus 140 ~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~-~~ 217 (236)
T cd03253 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE-RG 217 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEe-eC
Confidence 99999999999999999999999999999999999999998765 5699999999999965 99999999999985 46
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+.+++.
T Consensus 218 ~~~~~~ 223 (236)
T cd03253 218 THEELL 223 (236)
T ss_pred CHHHHh
Confidence 655543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=315.63 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCchhH
Q psy11936 145 VDIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 145 ~~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~~~ 219 (548)
..|+++|++++|. ...+|+|+||+|.+|+++||+|+|||||||||++|+|.... .|.+|.|.++++++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4699999999995 35799999999999999999999999999999999986321 256899999998774211110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCCh---hhhhcccCCCCH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFSR---AMQDRATKNFSG 295 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~~---~~~~~~~~~LSG 295 (548)
. . + .....++++.. ..+..+..+++... ..+....... ....+..+++.+++.. ...+.++.+|||
T Consensus 159 ~-~-l---r~~i~~v~q~~----~~~~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 159 L-E-L---RTRIGMVFQKP----TPFEMSIFDNVAYG-PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228 (329)
T ss_pred H-h-h---hccEEEEecCC----ccCCCcHHHHHHhH-HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence 0 0 0 01111222211 12334555555311 0010010011 1233677888888742 245788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||+|||||+.+|+||||||||++||+.+..++.+.|..+ +.|||+|||+++++..+||+|++|++|+++.+ |+
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~-g~ 307 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA-GE 307 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CC
Confidence 9999999999999999999999999999999999999998865 47999999999999999999999999999987 44
Q ss_pred HHH
Q psy11936 374 YSM 376 (548)
Q Consensus 374 y~~ 376 (548)
..+
T Consensus 308 ~~~ 310 (329)
T PRK14257 308 TKT 310 (329)
T ss_pred HHH
Confidence 444
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=325.18 Aligned_cols=216 Identities=24% Similarity=0.268 Sum_probs=162.2
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee----eccCchhHHHHHHHh
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE----VVADDLTAVESVLKA 226 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~----i~~~~~~~~~~~~~~ 226 (548)
++.+.|+...+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.++. +...+...+....
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r-- 104 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--NPVSRGSVLVKDGDGSIDVANCDAATLRRLR-- 104 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEecccccccCCHHHHHHHh--
Confidence 567788888999999999999999999999999999999999985 46889999998752 2211111111100
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....++++. ...++..++.+++.... .+..........++.++|+.+||.. ..++++.+|||||+|||+||||
T Consensus 105 -~~~i~~vfQ~---~~l~p~~Tv~eNi~~~~-~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 105 -THRVSMVFQK---FALMPWLTVEENVAFGL-EMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred -cCCEEEEECC---CcCCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHH
Confidence 0011111111 11222346666654221 1111112223467889999999974 6789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|+||||||||++||+.++.++.+.|.++ +.||||||||++++.++||+|++|++|+++.. |+.+++
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~-g~~~ei 252 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH-GTPEEI 252 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHHHH
Confidence 99999999999999999999999999888654 67999999999999999999999999999875 555443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=298.45 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||+++|++ +.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+..+.......+..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 78 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--VELSSGSILIDGVDISKIGLHDLRS-- 78 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhHhCCHHHHhh--
Confidence 789999999964 4799999999999999999999999999999999985 4678899999887653222111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
...+..+... .+..++.+++. ... .....++.++++.+++.... .+.++..||
T Consensus 79 -----~i~~~~q~~~----l~~~tv~enl~-------~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS 141 (221)
T cd03244 79 -----RISIIPQDPV----LFSGTIRSNLD-------PFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLS 141 (221)
T ss_pred -----hEEEECCCCc----cccchHHHHhC-------cCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCC
Confidence 1111111100 11122322221 011 11234455566666664322 246789999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. ||++++|++|+++.+
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999875 4799999999999975 999999999999865
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=295.20 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|.++||.++|+.+.++++|||+|++||++||+|||||||||.+.++.|+ ..|++|+|.++++++.........
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--v~~d~G~i~ld~~diT~lPm~~RA---- 77 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSGKILLDDEDITKLPMHKRA---- 77 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--EecCCceEEECCcccccCChHHHh----
Confidence 58899999999999999999999999999999999999999999999984 578999999999998765432211
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++++|... .+-.+++.+++..+.+... ...+ ....++.++|+.|++. +..+.+..+||||||+|+.|
T Consensus 78 --rlGigYLpQE~S---IFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 78 --RLGIGYLPQEAS---IFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred --hcCcccccccch---HhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHH
Confidence 112234443321 2234567777665544322 1222 2234567999999998 47899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNY---LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~---L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||||+.+|.++|||||++|.||.++..+.++ |+..+..|+|+-|+..+...+|||.+++.+|++... |+.++..
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~-G~p~ei~ 227 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE-GSPEEIV 227 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec-CCHHHHh
Confidence 9999999999999999999999887665555 555678999999999999999999999999999865 6655543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=299.62 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=148.9
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.+|+++||+++|++ ..+|+++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+..+.........
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCcEEEECCCchHHcCHHHHH
Confidence 36899999999975 3699999999999999999999999999999999985 467889999888655322111111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--HHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGq 297 (548)
..+....+...++ ..++.+++...... ............+.++++.+ |+.. ..+.++.+|||||
T Consensus 88 ~~i~~~~q~~~l~-----------~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~ 155 (226)
T cd03248 88 SKVSLVGQEPVLF-----------ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQ 155 (226)
T ss_pred hhEEEEecccHHH-----------hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHH
Confidence 1111111111111 11222221100000 00000000011245677888 7764 4688899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. ||+|++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99999999999999999999999999999999999999875 3699999999999964 999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=303.23 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=146.8
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+++||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.++++...... ..++.+. .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~------------~~~v~q~---~ 63 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--AQPTSGGVILEGKQITEPGPD------------RMVVFQN---Y 63 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCChh------------heEEecC---c
Confidence 5789999999999999999999999999999985 467899999988876422110 0111111 1
Q ss_pred hhcCChhHHHHHHHHHHH-HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 242 AADFSSEQQEQLKEIYEE-LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
......++.+++...... +..........++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 64 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 64 SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111224555554321110 00111112234578899999997 4678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 321 NHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 321 n~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 143 ~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 999999999999988764 57999999999999999999999999999865
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=320.80 Aligned_cols=307 Identities=21% Similarity=0.194 Sum_probs=224.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH-HHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV-ESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~-~~~~ 224 (548)
.|+++++++.|++..++++|||+|.+||+.||+|.||||||||+++|.| +..|++|.|.++|+.+...+.... ..-+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G--~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG--LYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC--cccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4889999999999999999999999999999999999999999999997 468999999999999877654321 1111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE--LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+...+++.++ ...++.+|+..-.+. ...++......++.++.+.+||+- ..+.++..||-|+||||.
T Consensus 82 GMVhQHF~Lv----------~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLV----------PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccc----------cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHH
Confidence 1122222222 234455544211110 001122345678889999999984 468999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|-+||+.+|++|||||||+.|-|...+.|...|+++ ++|||+|||-+.++.++|||+-+|..|+++- .++.-.
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg---t~~~~~- 226 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG---TVDPVA- 226 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe---eecCCC-
Confidence 999999999999999999999999999999988765 6899999999999999999999999999763 322100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCC
Q psy11936 380 MYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDP 459 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~ 459 (548)
+.-.++++++.-. . + +. .... ++ +
T Consensus 227 -------------~~t~~ela~lMvG----------------------------------~-~-v~----~~~~--~~-~ 250 (501)
T COG3845 227 -------------ETTEEELAELMVG----------------------------------R-E-VV----LRVV--KP-P 250 (501)
T ss_pred -------------CCCHHHHHHHhcC----------------------------------C-c-cc----cccc--cC-C
Confidence 0000111111100 0 0 00 0001 12 2
Q ss_pred CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC--c--cceeeccCCCCCCCCCCee-eccce
Q psy11936 460 PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP--R--EYVVKFSFPDPPPLQPPIL-GLHNV 525 (548)
Q Consensus 460 ~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~--~--~~~~~~~~~~~~~~~~~~~-~~~n~ 525 (548)
...+.+||++++|+..-..+-+.+++|||.. +|+-.-|-|= | +.|+..|+|+.+|..|.|+ .++.+
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 2346899999999997543346899999985 9999999883 4 7799999999877778754 45554
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=291.45 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+++++|++|++|.+++|||||||||||||.+++.+ ...++|.|.+.+.++...+...+...+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~~d~G~i~i~g~~~~~~~s~~LAk~l- 77 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--LKKDSGEITIDGLELTSTPSKELAKKL- 77 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh--ccccCceEEEeeeecccCChHHHHHHH-
Confidence 47899999999999999999999999999999999999999999999964 467899999999998765544443322
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH-HhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL-KAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++.+...+ ....++.+.+.. .++ ...| ..+.+..+.++++.|+|. .+.+++..+||||||||+.
T Consensus 78 ------SILkQ~N~i---~~rlTV~dLv~F--GRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAf 145 (252)
T COG4604 78 ------SILKQENHI---NSRLTVRDLVGF--GRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAF 145 (252)
T ss_pred ------HHHHhhchh---hheeEHHHHhhc--CCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhh
Confidence 223222111 112222221110 000 0011 123456788999999998 4789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|..|+++.+.+|||||.|+||......+++.|+ ++++|||+|-||.+|+..++|+|+-|.+|+++. .|+.++
T Consensus 146 IAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~e 222 (252)
T COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPDE 222 (252)
T ss_pred hheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHHH
Confidence 9999999999999999999999987766666665 468999999999999999999999999999986 465544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=336.83 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=160.7
Q ss_pred ccEEEEeEEEEe---CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISA---KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y---~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.+|+++|++++| +++.+|+|+||+|.+|+++||+|||||||||||++|+|. .. |.+|+|.+.+.++......
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--~~p~~~G~i~~~g~~~~~~~~~-- 331 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--YPGKFEGNVFINGKPVDIRNPA-- 331 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--CCCCCCeEEEECCEECCCCCHH--
Confidence 369999999999 346799999999999999999999999999999999985 24 3689999988766321110
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
.. . ....+++.+...........++.+++... ...+.... ......++.++|+.+++.....++++.+||||
T Consensus 332 ~~-~---~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 407 (500)
T TIGR02633 332 QA-I---RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGG 407 (500)
T ss_pred HH-H---hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHH
Confidence 00 0 01112222221000112233444443221 11111000 01123567889999999643468999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||++++|++|+++..
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999988877654 67999999999999999999999999999764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=310.41 Aligned_cols=220 Identities=20% Similarity=0.344 Sum_probs=163.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEeceeeccCch--hHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQEVVADDL--TAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~~q~i~~~~~--~~~ 220 (548)
+|.++||+++|+++.+|+++||+|.+|+++||+|+|||||||||++|+|...+ .|.+|.|.+.+..+..... ..+
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 68999999999988999999999999999999999999999999999996321 2578999998876532111 111
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH---------hcCC---CChHHHHHHHHHhCCCCh---hh
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK---------AIGA---DSAEPRARRILAGLGFSR---AM 285 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~---------~~~~---~~~~~~~~~~L~~lgl~~---~~ 285 (548)
.. ...++.+.. ..+..++.+++........ ..+. ......+..+++.+++.. ..
T Consensus 125 ~~-------~i~~v~q~~----~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 125 RK-------RVGMVFQSP----NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred hh-------ceEEEccCC----ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 10 111111111 0112244444432111000 0001 112456788899998842 34
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE-EEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI-IHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI-i~L 362 (548)
.++++.+|||||+|||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999876 469999999999999999997 578
Q ss_pred eCCEEEEEcCCHHHH
Q psy11936 363 DQQKLYYYKGNYSMF 377 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f 377 (548)
++|+++.+ |+.+.+
T Consensus 274 ~~G~i~~~-g~~~~~ 287 (305)
T PRK14264 274 TGGELVEY-DDTDKI 287 (305)
T ss_pred cCCEEEEe-CCHHHH
Confidence 99999875 665544
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=292.37 Aligned_cols=174 Identities=29% Similarity=0.395 Sum_probs=132.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++........ . .
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~-~-~-- 74 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--EEPDSGSILIDGEDLTDLEDELP-P-L-- 74 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEEccccchhHH-H-H--
Confidence 4689999999888899999999999999999999999999999999985 46778999998876532110000 0 0
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
.....+..+.. ......+. .+.+.+ .|||||+||++||||
T Consensus 75 -~~~i~~~~q~~---~~~~~~t~--------------------------~~~l~~----------~lS~G~~qr~~la~a 114 (178)
T cd03229 75 -RRRIGMVFQDF---ALFPHLTV--------------------------LENIAL----------GLSGGQQQRVALARA 114 (178)
T ss_pred -hhcEEEEecCC---ccCCCCCH--------------------------HHheee----------cCCHHHHHHHHHHHH
Confidence 00000000000 00000011 000111 199999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||++++..+||+|++|++|+
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999988764 5799999999999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=292.75 Aligned_cols=218 Identities=21% Similarity=0.242 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+..||...+|++|||++.+||+++|+|+||+||||||++|+|. ..+.+|+|.+.++++..........
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--~~~~~G~I~~~G~dit~~p~~~r~r--- 77 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSGRIIFDGEDITGLPPHERAR--- 77 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeeEEECCeecCCCCHHHHHh---
Confidence 68999999999999999999999999999999999999999999999984 4667899999999987654322110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH-HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP-RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++- ...+..+++.+|+..-... ........ ..+++++.|---.+..+++.++|||||||.++||
T Consensus 78 ---~Gi~~VPeg---R~iF~~LTVeENL~~g~~~---~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 78 ---LGIAYVPEG---RRIFPRLTVEENLLLGAYA---RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred ---CCeEeCccc---ccchhhCcHHHHHhhhhhc---ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 011122221 2233456677766421111 11111112 2667777775434677899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC----CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~----~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|||+.+|++|||||||.+|-|.-+..+.+.|+.++ .|||+|.++..++..++||.++|++|+++. .|+-++..
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~-~G~~~eL~ 225 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL-SGTAAELL 225 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE-ecCHHHHh
Confidence 99999999999999999999999998888887653 499999999999999999999999999986 56655543
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=294.41 Aligned_cols=182 Identities=24% Similarity=0.375 Sum_probs=140.1
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|+++.+|+|+||+|.+|+++||+|+|||||||||++|+|.....|.+|+|.++++++..........
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~---- 76 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERAR---- 76 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhh----
Confidence 4689999999988899999999999999999999999999999999985213578899999988764322111000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....+.++... ..... .+.+.+ .....+|||||+|||+||||
T Consensus 77 --~~i~~v~q~~~---~~~~~-----------------------~~~~~l----------~~~~~~LS~G~~qrv~lara 118 (200)
T cd03217 77 --LGIFLAFQYPP---EIPGV-----------------------KNADFL----------RYVNEGFSGGEKKRNEILQL 118 (200)
T ss_pred --CcEEEeecChh---hccCc-----------------------cHHHHH----------hhccccCCHHHHHHHHHHHH
Confidence 00011111000 00000 011111 22346899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHh-hcCEEEEEeCCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDN-VCNEIIHLDQQKLYYY 370 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~-vadrIi~L~~G~i~~~ 370 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++.. +||++++|++|+++..
T Consensus 119 l~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999875 5799999999999988 7999999999999865
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=341.43 Aligned_cols=214 Identities=26% Similarity=0.320 Sum_probs=164.8
Q ss_pred ccEEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+|+|+.. .+|+|+||+|++||++||||+||||||||+|+|+|. ..|..|+|.+++.++...+...+++
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl--y~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--YKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEeHHhcCHHHHHh
Confidence 369999999999765 699999999999999999999999999999999974 6899999999999987666655544
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
.+....+.. ..+..+..+++. ........+.+.+++...|..+. ........
T Consensus 548 ~ig~V~Q~~-----------~Lf~gSI~eNi~-------l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 548 QVGYVLQDP-----------FLFSGSIRENIA-------LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred heeEEcccc-----------hhhcCcHHHHHh-------cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 333322211 123334443332 11122222334444443333322 22445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.++. +|+|+|||+.+.+. .||+|++|++|+|+..
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceecc
Confidence 99999999999999999999999999999999999999999999885 89999999999996 5999999999999974
Q ss_pred cCCHHHHHHH
Q psy11936 371 KGNYSMFKKM 380 (548)
Q Consensus 371 ~g~y~~f~~~ 380 (548)
|+.++..+.
T Consensus 689 -gs~~ell~~ 697 (709)
T COG2274 689 -GSHEELLAQ 697 (709)
T ss_pred -CCHHHHHHh
Confidence 787776543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=294.03 Aligned_cols=196 Identities=26% Similarity=0.319 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|++..+|+|+||+|.+|+++||+|+||||||||+++|+|. ..|.+|+|.+.+.++.. .. +.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~--~~-~~---- 72 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAGTIKLDGGDIDD--PD-VA---- 72 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEeCcc--hh-hH----
Confidence 58999999999988899999999999999999999999999999999985 45788999998865421 00 10
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .+ .+ ....++.++++.+|+.. ..++++.+|||||+||++|||
T Consensus 73 ---~~~~~~~~~---~~~~~~~tv~~~l~~~~-~~--~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 73 ---EACHYLGHR---NAMKPALTVAENLEFWA-AF--LG--GEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALAR 140 (207)
T ss_pred ---hhcEEecCC---CcCCCCCcHHHHHHHHH-Hh--cC--CcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHH
Confidence 011111110 11112344555443211 11 11 12346889999999974 568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++.. |+++.+..
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 999999999999999999999999999999765 6799999999999986 99988854
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=290.20 Aligned_cols=170 Identities=31% Similarity=0.467 Sum_probs=132.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|++..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+.... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--LKPDSGEIKVLGKDIKKEP-EEVK----- 72 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEcccch-Hhhh-----
Confidence 4689999999888899999999999999999999999999999999985 4578899998887653211 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++++.. ......++.++ + .|||||+|||+||||
T Consensus 73 --~~i~~~~q~~---~~~~~~tv~~~-----------------------~---------------~LS~G~~qrv~lara 109 (173)
T cd03230 73 --RRIGYLPEEP---SLYENLTVREN-----------------------L---------------KLSGGMKQRLALAQA 109 (173)
T ss_pred --ccEEEEecCC---ccccCCcHHHH-----------------------h---------------hcCHHHHHHHHHHHH
Confidence 0001111100 00000011100 0 099999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+++..+||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999876 47999999999999999999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=299.85 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=163.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..+.++++++.|++..+|+++||+|.+|+++||+|+|||||||||++|+|...+. +.+|+|.+.++++........
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~- 85 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV- 85 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH-
Confidence 4588999999999889999999999999999999999999999999999863221 368999999887642111100
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh---hhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA---MQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~---~~~~~~~~LSGGqk 298 (548)
. . .....+.++.. ..+..++.+++..... +... ......++.++++.+++... ..++++.+|||||+
T Consensus 86 ~-~---~~~i~~v~q~~----~~~~~tv~enl~~~~~-~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 86 V-V---RRYIGMVFQQP----NPFSMSIFDNVAFGLR-LNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred h-h---hhceEEEecCC----ccccccHHHHHHHHHh-hcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 0 0 00111111111 1123444444432111 1000 11234567889999998532 34577889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe--------CCEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD--------QQKLY 368 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~--------~G~i~ 368 (548)
||++|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|+ +|+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999999876 4699999999999999999999996 89998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 236 ~~-g~~~~~ 243 (261)
T PRK14263 236 EM-GPTAQI 243 (261)
T ss_pred Ee-CCHHHH
Confidence 75 565544
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=332.29 Aligned_cols=220 Identities=26% Similarity=0.322 Sum_probs=161.8
Q ss_pred ccEEEEeEEEEeC-----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe-ceee---ccC
Q psy11936 145 VDIKVENFSISAK-----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-EQEV---VAD 215 (548)
Q Consensus 145 ~~I~l~nls~~y~-----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~-~q~i---~~~ 215 (548)
.+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+. +... ...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--LEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEEecCCcccccccc
Confidence 3699999999994 25799999999999999999999999999999999985 35788999885 4321 110
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----hhhhcccC
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----AMQDRATK 291 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----~~~~~~~~ 291 (548)
....... . .....++++.. ......++.+++..... + .........++.++|+.+||.. ...++++.
T Consensus 356 ~~~~~~~-~---~~~i~~v~q~~---~l~~~~tv~e~l~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 356 GPDGRGR-A---KRYIGILHQEY---DLYPHRTVLDNLTEAIG-L-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred chhhHHH-H---hhhEEEEccCc---ccCCCCcHHHHHHHHHH-c-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 0000000 0 00112222211 11223455555432111 1 1111112356788999999974 25689999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ ++.|||+||||++++..+||+|++|++|++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999998854 467999999999999999999999999999
Q ss_pred EEEcCCHHH
Q psy11936 368 YYYKGNYSM 376 (548)
Q Consensus 368 ~~~~g~y~~ 376 (548)
+.. |+.++
T Consensus 507 ~~~-g~~~~ 514 (520)
T TIGR03269 507 VKI-GDPEE 514 (520)
T ss_pred EEE-CCHHH
Confidence 864 55444
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=288.04 Aligned_cols=172 Identities=27% Similarity=0.377 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+... ...+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~-~~~~---- 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--LKPQQGEITLDGVPVSDL-EKAL---- 73 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCEEEECCEEHHHH-HHHH----
Confidence 4689999999765 799999999999999999999999999999999985 467789998887654210 0000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++.+.. ..+..+ +.+ ..+.+|||||+||++||
T Consensus 74 ---~~~i~~~~q~~----~~~~~t-----------------------v~~-------------~i~~~LS~G~~qrv~la 110 (178)
T cd03247 74 ---SSLISVLNQRP----YLFDTT-----------------------LRN-------------NLGRRFSGGERQRLALA 110 (178)
T ss_pred ---HhhEEEEccCC----eeeccc-----------------------HHH-------------hhcccCCHHHHHHHHHH
Confidence 00000000000 000000 000 01678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++. .||++++|++|++++
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999875 579999999999996 699999999999975
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=298.15 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=143.7
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.........
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--~~p~~G~I~~~g~~~~~~~~~--------------------- 94 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--LSPTVGKVDRNGEVSVIAISA--------------------- 94 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--cCCCceEEEECCEEeEEeccc---------------------
Confidence 489999999999999999999999999999999985 467789888776421100000
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
......++.+++.... .............+..++..+++.. ..++++.+|||||+|||+|||||+.+|+|||||||
T Consensus 95 --~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEP 170 (264)
T PRK13546 95 --GLSGQLTGIENIEFKM-LCMGFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170 (264)
T ss_pred --CCCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 0000112222221100 0001111112234556788888874 67889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 320 TNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
|++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.+ |+.+++..
T Consensus 171 t~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~-g~~~~~~~ 232 (264)
T PRK13546 171 LSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY-GELDDVLP 232 (264)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe-CCHHHHHH
Confidence 9999999999988888665 67999999999999999999999999999865 77666543
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=303.38 Aligned_cols=209 Identities=25% Similarity=0.309 Sum_probs=155.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
+++||++. .+|+|+||+|.+|+++||+|+|||||||||++|+|.. +.+|+|.+.++++..........
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~---~~~G~i~~~g~~i~~~~~~~~~~----- 69 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL---PGSGSIQFAGQPLEAWSAAELAR----- 69 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCeEEEECCEecCcCCHHHHhh-----
Confidence 46788875 3899999999999999999999999999999999852 45899999888764322111111
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
...++++.. ...+..++.+++.... ...........++.++++.+|+. ...++++.+|||||+|||+|||||
T Consensus 70 --~i~~v~q~~---~~~~~~tv~~nl~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 70 --HRAYLSQQQ---TPPFAMPVFQYLTLHQ--PDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred --heEEecccC---ccCCCccHHHHHHhcC--ccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHH
Confidence 011111110 1112234444332110 00001112245678899999997 456889999999999999999999
Q ss_pred cc-------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 308 YI-------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 308 ~~-------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+. +|++|||||||++||+.++.++.++|..+ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 220 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS-GRRDEV 220 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 97 67999999999999999999999998765 47999999999999999999999999999864 565543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=335.74 Aligned_cols=216 Identities=17% Similarity=0.229 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||++.|+ .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.++...... .. .
T Consensus 265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~g~~~~~~~~~--~~-~- 336 (510)
T PRK09700 265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--DKRAGGEIRLNGKDISPRSPL--DA-V- 336 (510)
T ss_pred EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCEECCCCCHH--HH-H-
Confidence 699999999874 489999999999999999999999999999999985 367889999988766321110 00 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH----HHh-cC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE----LKA-IG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~-~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
.....++++...........++.+++...... +.. .+ ......++.++|+.+|+.....++++.+|||||
T Consensus 337 --~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 337 --KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred --HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 00112222210000111223444443211000 000 00 011234577899999996345789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+|||||+.+|+|||||||||+||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++...
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999998764 679999999999999999999999999998654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=287.30 Aligned_cols=168 Identities=29% Similarity=0.450 Sum_probs=129.5
Q ss_pred EEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++ ..+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|.|.+.+.++.......+..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGRVRLDGADISQWDPNELGD-- 76 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEEcccCCHHHHHh--
Confidence 468999999975 5699999999999999999999999999999999985 4678899998887653221111000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++.+.. ..+..+ + .+. + |||||+|||+||
T Consensus 77 -----~i~~~~q~~----~~~~~t-----------------------v---~~~-----------l--LS~G~~qrv~la 108 (173)
T cd03246 77 -----HVGYLPQDD----ELFSGS-----------------------I---AEN-----------I--LSGGQRQRLGLA 108 (173)
T ss_pred -----heEEECCCC----ccccCc-----------------------H---HHH-----------C--cCHHHHHHHHHH
Confidence 000000000 000000 0 000 0 999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++. +||+|++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 9999999999999999999999999999998765 469999999999985 7999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=297.19 Aligned_cols=208 Identities=25% Similarity=0.327 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---CCCeEEEEeceeeccCchh
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---~~~g~I~~~~q~i~~~~~~ 218 (548)
.+.++||++.|.+ +++|+|+||+|.+|+++||+||||||||||+++|+|. .. |.+|+|.+.++++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--~~~~~~~~G~i~~~g~~~~~---~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--VEGGGTTSGQILFNGQPRKP---D 77 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--cCCCCCCceEEEECCEECCh---H
Confidence 3678999999964 5799999999999999999999999999999999985 24 678999998876521 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-C--ChHHHHHH-HHHhCCCChhhhhcccCCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-D--SAEPRARR-ILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~--~~~~~~~~-~L~~lgl~~~~~~~~~~~LS 294 (548)
... ....++++. ...+...++.+++.... ....... . ....++.. +|..+++. ...++.+.+||
T Consensus 78 ~~~-------~~i~~~~q~---~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS 145 (226)
T cd03234 78 QFQ-------KCVAYVRQD---DILLPGLTVRETLTYTA-ILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGIS 145 (226)
T ss_pred Hhc-------ccEEEeCCC---CccCcCCcHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcC
Confidence 000 011111111 11122335555543211 1110000 1 11223445 88999987 35688899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCH-HHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQ-SFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~-~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+|||+. ..+..+||+|++|++|+++..
T Consensus 146 ~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999999998764 57999999998 688899999999999999753
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=330.18 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=158.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-chhHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-DLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~-~~~~~~~~ 223 (548)
.+|+++||++.|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. .+.+.+|+|.+.+..+... ......
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-~~~~~~G~i~~~g~~~~~~~~~~~~~-- 335 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYSNDLTLFGRRRGSGETIWDIK-- 335 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCcccCCeEEEecccCCCCCCHHHHH--
Confidence 469999999999988899999999999999999999999999999999984 2222589999988654211 111011
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH-HHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE-LKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
....++.+...+.. ....+..+.+...... ...... .....++.++|+.+|+.....++++.+||||||||
T Consensus 336 -----~~i~~v~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 336 -----KHIGYVSSSLHLDY-RVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred -----hhceEECHHHHhhc-ccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 11122222110000 0011111111100000 000001 11235678999999997536789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CeEEEEecCHHHHHh-hcCEEEEEeCCEEEEEcC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---K-KTLLIVSHDQSFLDN-VCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~-~TvIiVSHD~~~l~~-vadrIi~L~~G~i~~~~g 372 (548)
|+|||||+.+|+||||||||++||+.++.++.++|.++ + .|||+||||++++.. +||++++|++|+++.+..
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999999875 2 479999999999987 599999999999988743
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=291.24 Aligned_cols=180 Identities=23% Similarity=0.311 Sum_probs=137.8
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
.|+++|+++.|++ +.+|+++||+|.+|++++|+|||||||||||++|+|.....|.+|+|.++++++. ....
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5889999999975 6799999999999999999999999999999999985323478899998887652 0000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
....+..+. ....+..++.+++... . . ..+|||||+|||
T Consensus 79 -------~~i~~~~q~---~~~~~~~tv~~~l~~~-----------------~----------~----~~~LSgGe~qrv 117 (192)
T cd03232 79 -------RSTGYVEQQ---DVHSPNLTVREALRFS-----------------A----------L----LRGLSVEQRKRL 117 (192)
T ss_pred -------hceEEeccc---CccccCCcHHHHHHHH-----------------H----------H----HhcCCHHHhHHH
Confidence 011111111 0111122333322100 0 0 018999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeC-CEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQ-QKLYYY 370 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~-G~i~~~ 370 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|||+||||.+ .+..+||+|++|++ |+++++
T Consensus 118 ~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 9999999999999999999999999999999998765 579999999998 47788999999999 999864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=290.88 Aligned_cols=196 Identities=22% Similarity=0.322 Sum_probs=147.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++++|++ ..+|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+..........
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~~~g~~~~~~~~~~~~~- 82 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGKIEIDGIDISTIPLEDLRS- 82 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCeEEECCEEhHHCCHHHHHh-
Confidence 4889999999975 4799999999999999999999999999999999985 4678899999887653221111110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...++.+.. ..+..++.+++. ..... ....+.++++ .++++.+|||||+|||+|
T Consensus 83 ------~i~~v~q~~----~~~~~tv~~~l~-------~~~~~-~~~~~~~~l~--------~~~~~~~LS~G~~qrv~l 136 (207)
T cd03369 83 ------SLTIIPQDP----TLFSGTIRSNLD-------PFDEY-SDEEIYGALR--------VSEGGLNLSQGQRQLLCL 136 (207)
T ss_pred ------hEEEEecCC----cccCccHHHHhc-------ccCCC-CHHHHHHHhh--------ccCCCCcCCHHHHHHHHH
Confidence 111111111 111223333321 11111 1223334443 256789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||.+++.. ||++++|++|++..++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999875 4799999999999976 9999999999998653
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=316.66 Aligned_cols=212 Identities=29% Similarity=0.414 Sum_probs=165.5
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.++++||||+|.++. +|+|+||++.+||+++|+|++|||||||+.+|+|. ..|.+|+|...+.++...+...++..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~--~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA--WDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc--cCCCCCeeeECCcChhhCChhhHHHH
Confidence 689999999997754 99999999999999999999999999999999984 57889999999988865443333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc----------ccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR----------ATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~----------~~~~L 293 (548)
+....++..+ |..+..+|+ ..-..+..++.+.++|+.+|+.+...+. ....|
T Consensus 414 i~vl~Qr~hl-----------F~~Tlr~NL-------~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L 475 (573)
T COG4987 414 ISVLTQRVHL-----------FSGTLRDNL-------RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475 (573)
T ss_pred HhhhccchHH-----------HHHHHHHHH-------hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC
Confidence 2222222211 223333332 2223444566777788888876433332 34679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||+||++|||+|+++.+++||||||.|||+.+...+...|.+. ++|+|+|||++..+.. ||+|++|++|+++. .
T Consensus 476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~ 553 (573)
T COG4987 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-E 553 (573)
T ss_pred CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-c
Confidence 999999999999999999999999999999999999998888654 5799999999999964 99999999999997 4
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|+|.+...
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 88877543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=338.81 Aligned_cols=210 Identities=27% Similarity=0.398 Sum_probs=165.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF--ETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 599999999995 35799999999999999999999999999999999984 57889999999998865554443332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh----------hcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ----------DRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~----------~~~~~~L 293 (548)
+.. +.|. ...+..+..+|+.. +....++++.++++..|+.+... ......|
T Consensus 529 i~~-------v~Q~----~~lf~gTI~eNi~~--------~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 529 LGV-------VLQN----GRLMSGSIFENIAG--------GAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred cEE-------EccC----CccCcccHHHHHhc--------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 222 2221 12234455554421 11134556677777777753221 1234679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|.++++|+|+|||+++.+.. ||+|++|++|+++.. |+
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~-G~ 667 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQ-GT 667 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEEE-CC
Confidence 9999999999999999999999999999999999999999999988999999999999865 999999999999975 78
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 668 ~~~Ll 672 (686)
T TIGR03797 668 YDELM 672 (686)
T ss_pred HHHHH
Confidence 77653
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=289.94 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=147.4
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||++.|+++.+|+++||+|.+|+++||+||||||||||+++|+|. ..|.+|+|.+.+.++.... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~-~~~~----- 72 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--LRPDSGEVRWNGTALAEQR-DEPH----- 72 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccch-HHhh-----
Confidence 4689999999999999999999999999999999999999999999985 4678899998887653211 0000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
....++.+. .......++.+++.... .+ .. . ...++.++++.+|+.. ..++++.+|||||+|||+||||
T Consensus 73 --~~i~~~~q~---~~~~~~~tv~~~l~~~~-~~--~~-~-~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 --RNILYLGHL---PGLKPELSALENLHFWA-AI--HG-G-AQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARL 141 (198)
T ss_pred --hheEEeccC---cccccCCcHHHHHHHHH-HH--cC-C-cHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHH
Confidence 011111111 01112234555443211 11 11 1 2446788999999974 5688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|+.+|++|||||||++||+.++.++.++|.++ +.|||+||||...+ .|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 99999999999999999999999999999875 57999999998654 4787765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=287.14 Aligned_cols=176 Identities=23% Similarity=0.344 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|++++| +|+++||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++........ .
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~~~~~~~---~- 73 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--RPPASGEITLDGKPVTRRSPRDA---I- 73 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCccCHHHH---H-
Confidence 58999999999 99999999999999999999999999999999985 46788999998876643221100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....+..+........+..++.+++. +. ..|||||+|||+|||
T Consensus 74 --~~~i~~~~q~~~~~~~~~~~t~~e~l~--------------------------~~--------~~LS~G~~qrl~la~ 117 (182)
T cd03215 74 --RAGIAYVPEDRKREGLVLDLSVAENIA--------------------------LS--------SLLSGGNQQKVVLAR 117 (182)
T ss_pred --hCCeEEecCCcccCcccCCCcHHHHHH--------------------------HH--------hhcCHHHHHHHHHHH
Confidence 000111111000000011112222110 00 009999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++
T Consensus 118 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 118 WLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998875 57999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=296.01 Aligned_cols=203 Identities=21% Similarity=0.288 Sum_probs=147.4
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP----PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~----~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~ 236 (548)
+|+|+||+|.+|++++|+|||||||||||++|+|. ..| .+|+|.+.+.++.... ... ....++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~~~~~G~i~~~g~~~~~~~--~~~-------~~i~~~~q 69 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--LPPGLTQTSGEILLDGRPLLPLS--IRG-------RHIATIMQ 69 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCccCccccEEEECCEechhhh--hhh-------heeEEEec
Confidence 57899999999999999999999999999999985 345 7899999887653210 000 00111111
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh--hhhhcccCCCCHHHHHHHHHHHHHccCCCEE
Q psy11936 237 CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR--AMQDRATKNFSGGWRMRVSLARALYIEPTLL 314 (548)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~P~lL 314 (548)
.... ......+..+++...... ..........++.++++.+|+.. ...++++.+|||||+|||+|||||+.+|+||
T Consensus 70 ~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl 147 (230)
T TIGR02770 70 NPRT-AFNPLFTMGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL 147 (230)
T ss_pred Cchh-hcCcccCHHHHHHHHHHH-cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1000 000112233332211110 00001122456788999999973 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 315 LLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 315 LLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |..+++
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 213 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER-GTVKEI 213 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 999999999999999998888754 57999999999999999999999999999865 555544
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=284.88 Aligned_cols=203 Identities=28% Similarity=0.354 Sum_probs=160.4
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++.+.+++.+|++++ +|+|+|++|.+||.++++|||||||||||++++|. ..|..|+|..++..+...+...
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--~~P~~G~i~l~~r~i~gPgaer---- 76 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--VTPSRGSIQLNGRRIEGPGAER---- 76 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--cCcccceEEECCEeccCCCccc----
Confidence 467889999999877 99999999999999999999999999999999984 5788999999988776543211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH--hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK--AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
+-.++...+++.. ++.+|+ ...+. .+.......++.++|..+|+.+ ..++++.+|||||||||
T Consensus 77 -gvVFQ~~~LlPWl----------~~~dNv---afgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRv 141 (259)
T COG4525 77 -GVVFQNEALLPWL----------NVIDNV---AFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRV 141 (259)
T ss_pred -eeEeccCccchhh----------HHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHH
Confidence 0111222222222 222322 22233 3333444567889999999985 45899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeC--CEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~ 369 (548)
.|||||+.+|++||||||+++||.-+++.+..+|-+ .++.+++||||.+++--+++++++|+. |+|+.
T Consensus 142 GiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 142 GIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred HHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999999999999888877776644 478999999999999999999999984 78775
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=330.41 Aligned_cols=217 Identities=15% Similarity=0.219 Sum_probs=157.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||++.| +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++....... ..
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~~~~~---~~ 321 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--REKSAGTITLHGKKINNHNANE---AI 321 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--CcCCccEEEECCEECCCCCHHH---HH
Confidence 369999999984 4699999999999999999999999999999999985 4678899999887664221110 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHH-HHHHHHHHh-cC---CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQL-KEIYEELKA-IG---ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~-~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
. ....++++.......+...+..++. ......+.. .+ .......+..+++.+++.....++++.+|||||||
T Consensus 322 ~---~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 322 N---HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred H---CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 0 0011111111000011112221110 000000000 11 11224567889999999633568999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||+|||||+.+|+||||||||+|||+.++..+.++|.. .+.|||+||||++++..+||++++|++|+++.+.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999888854 4789999999999999999999999999998643
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=291.74 Aligned_cols=194 Identities=22% Similarity=0.244 Sum_probs=149.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.++++.. ....+.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~~G~v~~~g~~~~~-~~~~~~---- 73 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--LNPEKGEILFERQSIKK-DLCTYQ---- 73 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeeEEECCCcccc-CHHHHH----
Confidence 37899999999988999999999999999999999999999999999985 46788999998876532 111000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... . . ......+.++++.+++.. ..++++.+|||||+|||+|||
T Consensus 74 ---~~i~~~~q~---~~~~~~~tv~~~~~~~~---~-~--~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 ---KQLCFVGHR---SGINPYLTLRENCLYDI---H-F--SPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLR 140 (200)
T ss_pred ---hheEEeccc---cccCcCCCHHHHHHHHH---h-c--CcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHH
Confidence 111111111 11112345555443211 0 1 112356788999999974 568889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi 360 (548)
||+.+|++|||||||++||+.++.++.++|.++ +.|||+|||+.++++. ||.-+
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 999999999999999999999999999999864 5799999999999976 88654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.77 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||||+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 5999999999974 5799999999999999999999999999999999984 57889999999988755444333332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+....+.. ..+..+..+++. .......++++.++++..|+.+.. .......|
T Consensus 555 i~~v~Q~~-----------~lf~gTi~eNi~-------l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~L 616 (710)
T TIGR03796 555 VAMVDQDI-----------FLFEGTVRDNLT-------LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616 (710)
T ss_pred eeEEecCC-----------hhhhccHHHHhh-------CCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCC
Confidence 22222111 122334444331 111223345556666666554221 22334679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
|||||||++|||||+.+|++||||||||+||..+...+.+.|...++|+|+|||+++.+.. ||+|++|++|+++.. |+
T Consensus 617 SGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~-G~ 694 (710)
T TIGR03796 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR-GT 694 (710)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe-cC
Confidence 9999999999999999999999999999999999999999998888999999999999865 999999999999964 78
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 695 ~~~Ll 699 (710)
T TIGR03796 695 HEELW 699 (710)
T ss_pred HHHHH
Confidence 77654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=297.12 Aligned_cols=209 Identities=19% Similarity=0.266 Sum_probs=151.5
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++|++ ..+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.+.++.......+..
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--VDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--cCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46999999999976 5799999999999999999999999999999999985 4678899999887664322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHH---------HHHHhC--CCChhhhhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRAR---------RILAGL--GFSRAMQDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---------~~L~~l--gl~~~~~~~~~~ 291 (548)
.+....+... .+..++.+++. . ........+. .++..+ |+.. ..+.++.
T Consensus 96 ~i~~v~q~~~-----------l~~~tv~~nl~-------~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~ 155 (257)
T cd03288 96 RLSIILQDPI-----------LFSGSIRFNLD-------P-ECKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGE 155 (257)
T ss_pred hEEEECCCCc-----------ccccHHHHhcC-------c-CCCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCC
Confidence 1111111100 11112111110 0 0000111222 333333 4442 3455678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||+||++|||||+.+|++|||||||++||+.+..++.++|..+ +.|||+|||+++.+.. ||+|++|++|+++.
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 5799999999999976 99999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+.+++
T Consensus 235 ~-g~~~~~ 241 (257)
T cd03288 235 C-DTPENL 241 (257)
T ss_pred e-CCHHHH
Confidence 4 666654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=282.68 Aligned_cols=167 Identities=31% Similarity=0.473 Sum_probs=129.2
Q ss_pred EEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++|++++|++. .+|+++||+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.++.+.......+..
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~-- 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDLDLESLRK-- 76 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEECCEEhhhcCHHHHHh--
Confidence 4689999999876 799999999999999999999999999999999985 4577899998887653211110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...++.+.. ..+.. .+.+. + |||||+|||+||
T Consensus 77 -----~i~~~~~~~----~~~~~-----------------------t~~e~--------------l--LS~G~~~rl~la 108 (171)
T cd03228 77 -----NIAYVPQDP----FLFSG-----------------------TIREN--------------I--LSGGQRQRIAIA 108 (171)
T ss_pred -----hEEEEcCCc----hhccc-----------------------hHHHH--------------h--hCHHHHHHHHHH
Confidence 000000000 00000 00000 0 999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999876 4699999999999987 99999999874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=276.18 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+++.++.+.-++..+|+++||++.+||+++|+||||||||||+|+++. +..|++|.+.|.|+++...+...++..+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~--Lisp~~G~l~f~Ge~vs~~~pea~Rq~V- 79 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS--LISPTSGTLLFEGEDVSTLKPEAYRQQV- 79 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh--ccCCCCceEEEcCccccccChHHHHHHH-
Confidence 3566777777788999999999999999999999999999999999995 4578999999999998766655544332
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.++.+.. ..|..++.+++...+ ...........+..+|.+++++...+++.+.+|||||+||++|+|
T Consensus 80 ------sY~~Q~p----aLfg~tVeDNlifP~---~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR 146 (223)
T COG4619 80 ------SYCAQTP----ALFGDTVEDNLIFPW---QIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIR 146 (223)
T ss_pred ------HHHHcCc----cccccchhhccccch---HHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHH
Confidence 2333221 234455555543222 112233456778899999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
-|..-|+||||||||++||+.+...++++|..| +.+++.||||-+...+.+|++|-+..|.+-
T Consensus 147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999999999988888766 479999999999988999999999998763
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=271.83 Aligned_cols=144 Identities=43% Similarity=0.671 Sum_probs=128.2
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|++++|++..+|+++||++++|++++|+|+||||||||+++|+|. ..|.+|+|.+.+...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~~G~i~~~~~~~-------------- 64 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--LEPDEGIVTWGSTVK-------------- 64 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--CCCCceEEEECCeEE--------------
Confidence 4689999999888899999999999999999999999999999999985 467788887765310
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
+++ +.+|||||+||++||||
T Consensus 65 ----------------------------------------------------i~~--------~~~lS~G~~~rv~lara 84 (144)
T cd03221 65 ----------------------------------------------------IGY--------FEQLSGGEKMRLALAKL 84 (144)
T ss_pred ----------------------------------------------------EEE--------EccCCHHHHHHHHHHHH
Confidence 000 01199999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+.+|++|||||||++||+.++.++.++|++++.|||+|||+.+++..+||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999988999999999999999999999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=284.94 Aligned_cols=181 Identities=25% Similarity=0.380 Sum_probs=137.9
Q ss_pred cEEEEeEEEEeCC------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH
Q psy11936 146 DIKVENFSISAKG------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~ 219 (548)
.|+++||+++|++ ..+|+++||+|.+|++++|+|||||||||||++|+|.....|.+|+|.++++++... .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH---h
Confidence 3789999999975 679999999999999999999999999999999998420167889999988865320 0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
+. ....+..+.. ......+..+++.. .. ...+|||||+|
T Consensus 80 ~~-------~~i~~~~q~~---~~~~~~t~~~~i~~--------------------~~-----------~~~~LS~G~~q 118 (194)
T cd03213 80 FR-------KIIGYVPQDD---ILHPTLTVRETLMF--------------------AA-----------KLRGLSGGERK 118 (194)
T ss_pred hh-------heEEEccCcc---cCCCCCcHHHHHHH--------------------HH-----------HhccCCHHHHH
Confidence 00 0111111110 01111222222110 00 01189999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEE
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~ 370 (548)
||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||.. .+..+||++++|++|+++..
T Consensus 119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 999999999999999999999999999999999998765 479999999996 78889999999999999753
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=330.45 Aligned_cols=211 Identities=25% Similarity=0.315 Sum_probs=160.4
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||++.| +++++|+|+||+|++|+++||||+||||||||+++|+|. . |.+|.|.++++++...+...++..+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~--~-p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF--L-PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--C-CCCcEEEECCEecccCCHHHHHhhe
Confidence 49999999765 567899999999999999999999999999999999985 4 7899999999887654443333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 294 (548)
. +++|. ...|+.+..+|+.. ...+..++++.++++..++.+ .........||
T Consensus 426 ~-------~v~Q~----~~LF~~TI~eNI~~-------g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 426 S-------WVGQN----PQLPHGTLRDNVLL-------GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred E-------EecCC----CcCCCcCHHHHhhc-------CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 2 22221 12344555555421 112233445555555554432 12233456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+|||||||||+||..+...+.+.|.++ +.|+|+|||+++.+.. ||+|++|++|+++. .|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G 565 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QG 565 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cC
Confidence 99999999999999999999999999999999999999988876 4799999999998865 99999999999986 58
Q ss_pred CHHHHHH
Q psy11936 373 NYSMFKK 379 (548)
Q Consensus 373 ~y~~f~~ 379 (548)
++++..+
T Consensus 566 ~~~eL~~ 572 (588)
T PRK11174 566 DYAELSQ 572 (588)
T ss_pred CHHHHHh
Confidence 8776643
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=327.07 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.++++|+++. .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.++++........ .
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~g~~~~~~~~~~~---~- 326 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--TRRTAGQVYLDGKPIDIRSPRDA---I- 326 (501)
T ss_pred EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--CcCCCceEEECCEECCCCCHHHH---H-
Confidence 5889999842 589999999999999999999999999999999985 36788999998876532211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH-hcC----CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK-AIG----ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~----~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.....++++...........++.+++........ ..+ .......+.++|+.+||.....++++.+||||||||
T Consensus 327 --~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 327 --RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred --hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 0011122221100011222344444321100000 000 011234678899999995345789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+|||||+.+|+||||||||+|||+.++..|.++|.+ .+.|||+||||++++..+||++++|++|+++.. |..++|
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~-~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE-LAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE-EccccC
Confidence 9999999999999999999999999999999988754 468999999999999999999999999999864 444444
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=311.60 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+++|+.+. +|+++||+|++|+++||||+|||||||+||+|.+. ...+|+|.++|+++.......++..+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF---~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF---FDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH---hccCCcEEECCeeHhhhChHHhhhhe
Confidence 499999999998776 99999999999999999999999999999999974 23889999999998766655555544
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
+..++... .|+.+...++. .-..+...+.+.+++++.|+.+. ....+...||
T Consensus 428 g~VPQd~~-----------LFndTIl~NI~-------YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 428 GVVPQDSV-----------LFNDTILYNIK-------YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred eEeCCccc-----------ccchhHHHHhh-------cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 43333221 23333333321 11223334556666666665432 2234456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+||||++.+|+|+|||||||+||.++...+.+.+... ++|+|+|-||++.+.. ||+|++|++|++..+ |
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-g 567 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-G 567 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-c
Confidence 99999999999999999999999999999999999999998873 5899999999999976 999999999999987 7
Q ss_pred CHHHHHH
Q psy11936 373 NYSMFKK 379 (548)
Q Consensus 373 ~y~~f~~ 379 (548)
+.+++..
T Consensus 568 th~ell~ 574 (591)
T KOG0057|consen 568 THSELLA 574 (591)
T ss_pred cHHHHhh
Confidence 8777765
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=276.88 Aligned_cols=163 Identities=28% Similarity=0.361 Sum_probs=129.0
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
|+++|++++|+ ++.+|+++||+|.+|++++|+|+||||||||+++|+|. ..|.+|+|.+.+....
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~~~~~i------------ 66 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--WPWGSGRIGMPEGEDL------------ 66 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCCceE------------
Confidence 46899999995 46899999999999999999999999999999999985 3577888877542100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.++.+.. ..+..++.+++. +. .+.+|||||+||++|||
T Consensus 67 ------~~~~q~~----~~~~~tv~~nl~--------------------------~~------~~~~LS~G~~~rv~lar 104 (166)
T cd03223 67 ------LFLPQRP----YLPLGTLREQLI--------------------------YP------WDDVLSGGEQQRLAFAR 104 (166)
T ss_pred ------EEECCCC----ccccccHHHHhh--------------------------cc------CCCCCCHHHHHHHHHHH
Confidence 0000000 001112222110 00 36789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
||+.+|++|||||||++||+.++.++.++|.+++.|+|+||||.+++ .+||+|++|+++.
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999999999889999999999876 5899999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=327.61 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=162.9
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|++|+|++ .++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 5999999999964 5799999999999999999999999999999999984 578899999999887654443333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
. +++|. ...++.+..+|+.. +....++++.++++.+|+.+.. .......||
T Consensus 418 ~-------~v~Q~----~~lF~~Ti~~NI~~--------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 418 A-------MVQQD----PVVLADTFLANVTL--------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred E-------EEccC----CccccchHHHHHHh--------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 2 22221 12244455554421 1122355667777777765321 122345799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+|||+.+.+. .||+|++|++|+++.. |
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~-G 556 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQ-G 556 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEE-c
Confidence 99999999999999999999999999999999999999999875 589999999999886 4999999999999974 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 557 ~~~~L~ 562 (592)
T PRK10790 557 THQQLL 562 (592)
T ss_pred CHHHHH
Confidence 877653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=326.13 Aligned_cols=212 Identities=20% Similarity=0.259 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|+++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++........ ..
T Consensus 268 ~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~g~~i~~~~~~~~---~~ 337 (510)
T PRK15439 268 VLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--RPARGGRIMLNGKEINALSTAQR---LA 337 (510)
T ss_pred eEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 699999984 269999999999999999999999999999999985 46788999998876643221110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
....++++...........++.+++... ...+.. ........++.++|+.+||.....++++.+|||||||||+|
T Consensus 338 ---~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 338 ---RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred ---CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 0111222111000111223344433211 000000 01111234678899999996335689999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999998764 67999999999999999999999999999864
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.21 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=157.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++.+....... ..
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--~~p~~G~I~~~g~~i~~~~~~~---~~ 325 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--LPRTSGYVTLDGHEVVTRSPQD---GL 325 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCCCCHHH---HH
Confidence 3689999985 379999999999999999999999999999999985 4678899999887764322110 00
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH-HHHh----cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYE-ELKA----IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
....+++++...........++.+++..... .+.. ........++.++|+.+|+.....++++.+|||||||
T Consensus 326 ---~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 326 ---ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred ---HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 0011222221100011223344444422110 0100 0011224568899999999533568999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+|||||+.+|+||||||||++||+.++..+.++|..+ +.|||+||||++++..+||+|++|++|+++..
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998775 46999999999999999999999999999754
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=285.14 Aligned_cols=213 Identities=26% Similarity=0.342 Sum_probs=162.4
Q ss_pred cccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHH
Q psy11936 144 AVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~ 222 (548)
...|+++||++.|+++.+|+|+||+|++||.++|+|||||||||||++|+|. ..|.+|.+..++..+-..+. ..++.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCcchHHHHH
Confidence 3579999999999999999999999999999999999999999999999985 45668888888876643333 33333
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC------ChHHHHHHHHHhCCCChhhhhcccCCCCHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD------SAEPRARRILAGLGFSRAMQDRATKNFSGG 296 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 296 (548)
.++.... .+..... ....+.+.+. ...+..++.+ ....++..+|+.+|+.. ..+++..+||-|
T Consensus 107 ~IG~vS~--~L~~~~~------~~~~v~dvVl--Sg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSS--ELHERFR------VRETVRDVVL--SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQG 175 (257)
T ss_pred HhCccCH--HHHhhcc------cccccceeee--ecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHh
Confidence 2221110 0000000 0011111100 0011122222 23456788999999985 789999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||.|||||+.+|.+|||||||++||...++.|.+.|.++. .++|+|||..+.+-...++++.|.+|+++.
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999988763 479999999999999999999999999975
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=331.11 Aligned_cols=211 Identities=26% Similarity=0.378 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl--~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--YQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHhc
Confidence 5999999999964 5699999999999999999999999999999999974 57889999999988765444333332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+....+... .+..+..+++. .......++++.++++..|+.+.. .......|
T Consensus 541 i~~v~Q~~~-----------lf~~TI~eNi~-------~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 541 IGYVPQDPR-----------LFYGTLRDNIA-------LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred cEEECCChh-----------hhhhhHHHHHh-------CCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 222221111 12333333331 111122345556666666554221 22334679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.+. ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~- 680 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD- 680 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee-
Confidence 999999999999999999999999999999999999999999876 579999999999885 6999999999999975
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 681 G~~~eLl 687 (694)
T TIGR03375 681 GPKDQVL 687 (694)
T ss_pred CCHHHHH
Confidence 7777653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=325.89 Aligned_cols=212 Identities=21% Similarity=0.284 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.++++++...+...+...
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCceEEECCEEhhhcCHHHHHhh
Confidence 4999999999964 5799999999999999999999999999999999984 57889999999988754443333222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .++++. ...++.+..+++.. .......++++.++++.+|+.+.. ......+|
T Consensus 419 i-------~~v~Q~----~~lf~~Ti~~Ni~~------~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 419 V-------ALVSQN----VHLFNDTIANNIAY------ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred c-------eEEccC----ceeecchHHHHHhc------CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 2 222221 12234444444321 001112455666677776654221 12223569
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||+.+...+.+.|.+. ++|+|+|||+.+.+. .||+|++|++|++++.
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~- 559 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVER- 559 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 479999999999875 5999999999999875
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 560 g~~~~l~ 566 (582)
T PRK11176 560 GTHAELL 566 (582)
T ss_pred CCHHHHH
Confidence 7776653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=324.08 Aligned_cols=211 Identities=24% Similarity=0.378 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999964 4699999999999999999999999999999999984 57889999999988755444333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh---------hcccCCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ---------DRATKNFS 294 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~---------~~~~~~LS 294 (548)
+.. +.+.. ..+..+..+++. .......++.+.++++.+|+.+... ......||
T Consensus 416 i~~-------v~Q~~----~lf~~ti~~Ni~-------~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LS 477 (574)
T PRK11160 416 ISV-------VSQRV----HLFSATLRDNLL-------LAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLS 477 (574)
T ss_pred eeE-------Ecccc----hhhcccHHHHhh-------cCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCC
Confidence 221 22111 123334444331 1112234567788888888864321 12456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ ++|+|+|||+++.+.. ||+|++|++|+++.. |
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~-g 555 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQ-G 555 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEe-C
Confidence 99999999999999999999999999999999999999999876 5799999999999865 999999999999975 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 556 ~~~~l~ 561 (574)
T PRK11160 556 THQELL 561 (574)
T ss_pred CHHHHH
Confidence 776653
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=326.13 Aligned_cols=211 Identities=20% Similarity=0.321 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ ..+|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV--FDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999975 5799999999999999999999999999999999984 578899999999887654433333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
.. +++. ...+..+..+++. .......++++..+++.+|+.+. ........||
T Consensus 412 ~~-------v~Q~----~~lf~~Ti~~Ni~-------~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 412 AV-------VFQD----AGLFNRSIEDNIR-------VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred EE-------EecC----cccccccHHHHHh-------cCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 22 1111 1123344444431 11112234445555555554321 1223345799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||++|||||+.+|+||||||||++||+.+...+.+.|... ++|+|+|||+...+. .||+|++|++|+++.. |
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~-g 551 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVES-G 551 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEe-C
Confidence 99999999999999999999999999999999999999988775 489999999999875 5999999999999864 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 552 ~~~~l~ 557 (588)
T PRK13657 552 SFDELV 557 (588)
T ss_pred CHHHHH
Confidence 766553
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=301.76 Aligned_cols=226 Identities=24% Similarity=0.381 Sum_probs=171.5
Q ss_pred cccEEEEeEEEEeCC-----------ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 144 AVDIKVENFSISAKG-----------NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-----------~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
...|++++|.+.|.- ..++++|||++.+|+.+||||.||||||||-.+|.++ .+..|.|.|.|+++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL---~~s~G~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL---IPSQGEIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh---cCcCceEEECCccc
Confidence 467999999998832 2478999999999999999999999999999999974 56679999999998
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh----cCCCChHHHHHHHHHhCCCChhhhhc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA----IGADSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
...+...+.-. ..+..++++.. +....+.+++.+.+. +.+.. ....+...++.++|..+|++....++
T Consensus 351 ~~~~~~~mrpl----R~~mQvVFQDP-ygSLsPRmtV~qII~---EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R 422 (534)
T COG4172 351 DGLSRKEMRPL----RRRMQVVFQDP-YGSLSPRMTVGQIIE---EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR 422 (534)
T ss_pred cccChhhhhhh----hhhceEEEeCC-CCCCCcccCHHHHhh---hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc
Confidence 75443222110 00111111110 001111223333222 22222 22344567899999999999989999
Q ss_pred ccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+|+++|||||||++|||||+.+|.+++||||||+||..-+..+.++|+++ +.+.||||||+..+..+|++|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 99999999999999999999999999999999999999888888888764 57999999999999999999999999
Q ss_pred CEEEEEcCCHHHHHHH
Q psy11936 365 QKLYYYKGNYSMFKKM 380 (548)
Q Consensus 365 G~i~~~~g~y~~f~~~ 380 (548)
|+|++.+..-+.|.+.
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999976555555443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=315.30 Aligned_cols=211 Identities=27% Similarity=0.349 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
..++++||++.|++. ++++|+||++++|+.++|||+||||||||+++|+|. ..|..|+|.+++++....+...++..
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~--~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCccccccCHHHHHhH
Confidence 456677999999654 899999999999999999999999999999999985 46789999999988765444433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh---------hhcccCCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM---------QDRATKNFS 294 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~---------~~~~~~~LS 294 (548)
+ .++.+. ...+..+..+|+. ....+..++.+.++++..|+.+.. .......||
T Consensus 397 i-------~~v~Q~----p~lf~gTireNi~-------l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LS 458 (559)
T COG4988 397 I-------SWVSQN----PYLFAGTIRENIL-------LARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLS 458 (559)
T ss_pred e-------eeeCCC----CccccccHHHHhh-------ccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCC
Confidence 1 122211 1123344444432 222334566777777777665321 122334599
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||+|||+|||||+.+++|+||||||+|||.++...+.+.|.+. +.|||+|||+++.+.. ||+|++|++|+++.. |
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~-g 536 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQ-G 536 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceecc-C
Confidence 99999999999999999999999999999999999999988775 4799999999999976 999999999999974 6
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
++++.
T Consensus 537 ~~~~L 541 (559)
T COG4988 537 THEEL 541 (559)
T ss_pred CHHHH
Confidence 66654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=285.68 Aligned_cols=189 Identities=20% Similarity=0.215 Sum_probs=139.4
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.++++||+|.|+ ++.+|+++||+|.+|+++||+|+|||||||||++|+|...+. |.+|.|.+.+.++..... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~-~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE-KY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchh-hh
Confidence 478999999995 457999999999999999999999999999999999853211 778999998876532110 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
. ....+..+. ....+..++.+++.... .+. .++++..|||||+||
T Consensus 82 ~-------~~i~~~~q~---~~~~~~~tv~~~l~~~~--------------------~~~-----~~~~~~~LS~Ge~qr 126 (202)
T cd03233 82 P-------GEIIYVSEE---DVHFPTLTVRETLDFAL--------------------RCK-----GNEFVRGISGGERKR 126 (202)
T ss_pred c-------ceEEEEecc---cccCCCCcHHHHHhhhh--------------------hhc-----cccchhhCCHHHHHH
Confidence 0 001111111 01112234433332100 000 356788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEE-ecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIV-SHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiV-SHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
++|||||+.+|+||||||||++||+.++..+.++|.++ +.|+|++ +|+.+.+..+||++++|++|+++..
T Consensus 127 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 127 VSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 99999999999999999999999999999999988764 3465555 5667888899999999999999753
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.66 Aligned_cols=212 Identities=24% Similarity=0.279 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl--~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 599999999996 46799999999999999999999999999999999984 578899999999887554444333322
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
....+.. ..+..+..+++.. .......++++.++++..|+.+. ........||
T Consensus 551 ~~v~Q~~-----------~lf~gTI~eNi~l------~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 551 NYLPQEP-----------YIFSGSILENLLL------GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred EEEecCc-----------eehhHHHHHHHhc------cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 2221111 1233344444321 00112234455556665555321 1233456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||++|||||+.+|++|||||||++||..+...+.+.|..+ ++|+|+|||+++.+. .||+|++|++|+++. .|+
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~ 691 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGS 691 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECC
Confidence 99999999999999999999999999999999999999998876 579999999999885 599999999999986 488
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
+++..
T Consensus 692 ~~~L~ 696 (708)
T TIGR01193 692 HDELL 696 (708)
T ss_pred HHHHH
Confidence 77653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=287.52 Aligned_cols=208 Identities=23% Similarity=0.373 Sum_probs=159.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+++|+||+|++|+++|++|+|||||||+||+|+|. ..|.+|.|...|..........+ +..++.. .+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--l~p~~G~v~V~G~~Pf~~~~~~~--------~~~~~v~--gq 105 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--LLPTSGKVRVNGKDPFRRREEYL--------RSIGLVM--GQ 105 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--cccCCCeEEecCcCcchhHHHHH--------HHHHHHh--hh
Confidence 478999999999999999999999999999999984 57889999887765433211111 1111111 00
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
......+....+.+ .+...+..++.....++...+-+.+++.. .++.++..||-|||+|+.||.+|+++|+||+||||
T Consensus 106 k~ql~Wdlp~~ds~-~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~-~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 106 KLQLWWDLPALDSL-EVLKLIYEIPDDEFAERLDFLTEILDLEG-FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hheeeeechhhhhH-HHHHHHHhCCHHHHHHHHHHHHHHhcchh-hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 11111111122211 22333445555666778888888999975 56889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 320 TNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
|-+||..++..+.++|+.+ +.||+++||+++-+..+|+||++|+.|+++ |.|+.+.+.+.+.
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f~ 249 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQFG 249 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHhC
Confidence 9999999999999999876 479999999999999999999999999998 5788888766553
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=277.96 Aligned_cols=182 Identities=25% Similarity=0.364 Sum_probs=131.7
Q ss_pred EEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc--CchhH
Q psy11936 147 IKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA--DDLTA 219 (548)
Q Consensus 147 I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~--~~~~~ 219 (548)
|+++||+++|++. .+|+++||+|++|++++|+|||||||||||++|+|. ..|.+|+|.+.+. +.. .+..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--~~~~~G~i~~~g~-i~~~~q~~~- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPGS-IAYVSQEPW- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCCeEEEcCE-EEEEecCch-
Confidence 4689999999764 699999999999999999999999999999999985 4677888877651 111 1100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhc
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDR 288 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~ 288 (548)
+ +..++.+++.. ..........+++..+ |+. ...+.
T Consensus 77 -------------l-----------~~~t~~enl~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 123 (204)
T cd03250 77 -------------I-----------QNGTIRENILF--------GKPFDEERYEKVIKACALEPDLEILPDGDL-TEIGE 123 (204)
T ss_pred -------------h-----------ccCcHHHHhcc--------CCCcCHHHHHHHHHHcCcHHHHHhccCccc-ceecC
Confidence 0 00011111100 0000001111122222 222 12456
Q ss_pred ccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 289 ATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
++.+|||||+||++|||||+.+|++|||||||++||+.+..++.+ ++..+ +.|||+|||+.+++.. ||++++|++
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~ 202 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDN 202 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeC
Confidence 688999999999999999999999999999999999999998887 45433 4799999999999987 999999998
Q ss_pred CE
Q psy11936 365 QK 366 (548)
Q Consensus 365 G~ 366 (548)
|+
T Consensus 203 G~ 204 (204)
T cd03250 203 GR 204 (204)
T ss_pred CC
Confidence 84
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=306.41 Aligned_cols=211 Identities=28% Similarity=0.383 Sum_probs=169.3
Q ss_pred cccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 144 AVDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+..|.+.||+|.|.+. .++++++|-|..+++++||||||||||||||+|+|.. .|..|.+.-.......
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl--~p~~G~vs~~~H~~~~-------- 456 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL--QPTIGMVSRHSHNKLP-------- 456 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc--ccccccccccccccch--------
Confidence 4579999999999766 6899999999999999999999999999999999853 5666655432221110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+.+.. ......+.+..+++.. ........+.++.+|.++||+.+....++.+||+|||.||+
T Consensus 457 ----------~y~Qh~-~e~ldl~~s~le~~~~------~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 457 ----------RYNQHL-AEQLDLDKSSLEFMMP------KFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVL 519 (614)
T ss_pred ----------hhhhhh-HhhcCcchhHHHHHHH------hccccchHHHHHHHHHHhCCCccccccchhhcccccchhHH
Confidence 000100 0111122222222221 11223456678899999999988889999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
+|++++..|.||||||||||||+.++..+.++|.+|.++||+||||+.++.+++++||+..+|.+..|.|.|..|....
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997544
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.16 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+...
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF--YEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 5999999999964 5799999999999999999999999999999999984 57889999999987754433332222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCChhhh----------hcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSRAMQ----------DRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~----------~~~~~~ 292 (548)
+ .++++. ...+..+..+++. .... ...+.++.++++.+|+.+... ......
T Consensus 408 i-------~~v~Q~----~~lf~~Ti~~Ni~-------~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 408 V-------ALVSQD----VVLFNDTIANNIA-------YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred c-------eEEccC----cccccccHHHHHh-------cCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 1 222221 1223444444432 1111 234566777777777653211 122356
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|+||||||||++||..+...+.+.|.++ ++|+|+|||+...+. .||+|++|++|+++..
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVER 548 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999886 479999999998874 6999999999999875
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|++++.
T Consensus 549 -g~~~~l 554 (571)
T TIGR02203 549 -GTHNEL 554 (571)
T ss_pred -CCHHHH
Confidence 666654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=279.84 Aligned_cols=185 Identities=26% Similarity=0.346 Sum_probs=133.7
Q ss_pred eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 156 y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|.|.+.+.++...... .... .....++.
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~-~~~~----~~~i~~~~ 74 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--LRPQSGAVLIDGEPLDYSRKG-LLER----RQRVGLVF 74 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceeEEECCEEccccccc-hHHH----HhhEEEEe
Confidence 4567899999999999999999999999999999999985 467899999988776321110 0000 00111122
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEE
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLL 315 (548)
+... ...+..++.+++..... ...........++.++++.+|+.. ..++++.+|||||+|||+|||||+.+|+|||
T Consensus 75 q~~~--~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 75 QDPD--DQLFAADVDQDVAFGPL-NLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred cChh--hccccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1110 01122344444421110 001111122356788999999974 5789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH
Q psy11936 316 LDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF 351 (548)
Q Consensus 316 LDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~ 351 (548)
|||||++||+.++.++.++|.++ +.|||+||||+++
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999999775 5799999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=319.61 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ++++|+|+||+|++|+++|||||||||||||+++|+| +..|.+|.|.++|+++...+...++..+
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r--~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR--LYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc--cCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 499999999998 5799999999999999999999999999999999997 4577899999999888765555444333
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHH---------HhC--CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRIL---------AGL--GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L---------~~l--gl~~~~~~~~~~~L 293 (548)
.. ++|. ...|..+..+|+.. -..+..++.+.+++ ..+ |++. ........|
T Consensus 406 ~~-------V~Qd----~~LF~~TI~~NI~~-------g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt-~vge~G~~L 466 (567)
T COG1132 406 GI-------VSQD----PLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEFIANLPDGYDT-IVGERGVNL 466 (567)
T ss_pred cE-------Eccc----ceeecccHHHHHhc-------CCCCCCHHHHHHHHHHhChHHHHHhCcccccc-eecCCCccC
Confidence 22 2211 12233444444321 11111223333333 333 4442 223445689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+|||||||||+||..+...+.+.+.+. ++|+|+|+|++..+.. ||+|++|++|+++++
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~- 544 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER- 544 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999888643 3599999999999987 999999999998875
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|+++++..
T Consensus 545 G~h~eLl~ 552 (567)
T COG1132 545 GTHEELLA 552 (567)
T ss_pred cCHHHHHH
Confidence 88877654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.62 Aligned_cols=201 Identities=23% Similarity=0.284 Sum_probs=140.7
Q ss_pred EEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 148 KVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 148 ~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
.+.|++++|+ +..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+..+............
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i~~~g~~~~~~~~~~~~~~~-- 77 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--MQTLEGKVHWSNKNESEPSFEATRSRN-- 77 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--CCCCCCeEEECCcccccccccccchhh--
Confidence 4789999996 46799999999999999999999999999999999985 357789998887654321100000000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCCHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFSGG 296 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LSGG 296 (548)
.....++.+.. ..+..++.+++.. .... ....+..+++.+++.... .+.++..||||
T Consensus 78 -~~~i~~~~q~~----~~~~~t~~~nl~~-------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 78 -RYSVAYAAQKP----WLLNATVEENITF-------GSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred -cceEEEEcCCC----ccccccHHHHHhh-------cCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 00011111110 0112233333211 0011 122344566666654221 24578899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH--HHh---hcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN--YLQ---GWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~--~L~---~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+|||+|||||+.+|++|||||||++||+.++..+.+ ++. +.+.|||+||||.+++. .||++++|++|.
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 9999999999999999999999999999999888776 443 44689999999999985 699999998873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=315.66 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|.|.++++++...+...+...+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 5999999999965 5699999999999999999999999999999999984 578899999999887544333322221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh--hc--ccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ--DR--ATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~--~~~~LSGGqkqR 300 (548)
....+...++ ..+..++ +....++.+.++++.+++..... +. ...+||||||||
T Consensus 400 ~~v~q~~~lf-----------~~ti~~n-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qR 457 (547)
T PRK10522 400 SAVFTDFHLF-----------DQLLGPE-----------GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKR 457 (547)
T ss_pred EEEecChhHH-----------HHhhccc-----------cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHH
Confidence 1111111111 1111000 11223455677888888864321 11 135899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|+|+|||+.+.+. .||+|++|++|+++.+.|+..
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 9999999999999999999999999999988877753 3689999999998875 699999999999999877643
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=287.53 Aligned_cols=178 Identities=25% Similarity=0.367 Sum_probs=132.8
Q ss_pred eeeEeeeEEEE-----CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 160 DLFVNANLLIA-----NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 160 ~iL~~vsl~I~-----~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
..|.+++|++. +|+++||+|||||||||||++|+|. ..|.+|.|.+.+..+.....
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~~i~~~~q----------------- 68 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELDTVSYKPQ----------------- 68 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCceEEEecc-----------------
Confidence 35566666665 7999999999999999999999985 46778888776643321100
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEE
Q psy11936 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314 (548)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lL 314 (548)
.. ...+..++.+++.... .... .....+.++++.+|+. ...++++.+|||||+|||+|||||+.+|++|
T Consensus 69 --~~---~~~~~~tv~e~l~~~~---~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 69 --YI---KADYEGTVRDLLSSIT---KDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred --cc---cCCCCCCHHHHHHHHh---hhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 0011223333221110 0011 1123456788999997 4578999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 315 LLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 315 LLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+++..
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 999999999999999999988775 57999999999999999999999976543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=327.26 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=158.6
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ +++|+|+||+|++|++++||||||||||||+++|+|. ..|.+|+|.++++++...+...+..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHh
Confidence 5999999999964 4699999999999999999999999999999999984 5788999999998875444333322
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
.+ .++.|. ...+..+..+|+.. ......++.+.++++..++.+. .......+
T Consensus 556 ~i-------~~v~Q~----~~lF~gTIreNI~~-------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 556 QV-------ALVGQE----PVLFSGSVRENIAY-------GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred hc-------eEEecC----ccccccCHHHHHhc-------CCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 22 222221 12244455554421 1112234556666666665421 12223457
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||||||||++|||||+++|+||||||||++||..+...+.+.....++|+|+|||+++.+. .||+|++|++|+++.. |
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~-G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEM-G 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEe-e
Confidence 9999999999999999999999999999999999998888833333689999999999886 4999999999999875 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 696 t~~eL~ 701 (711)
T TIGR00958 696 THKQLM 701 (711)
T ss_pred CHHHHH
Confidence 776653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=318.12 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=149.5
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++|+++.|++. .|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+. ..+..
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl--~~p~~G~I~~~-~~i~y---------- 404 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV--LKPDEGEVDPE-LKISY---------- 404 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEe-eeEEE----------
Confidence 469999999999875 59999999999999999999999999999999985 35777877653 11100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.++.. ...+..++.+++.... ... .....+.++|+.+|+. ...++++.+|||||||||+||
T Consensus 405 ---------~~Q~~---~~~~~~tv~e~l~~~~---~~~---~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 405 ---------KPQYI---KPDYDGTVEDLLRSIT---DDL---GSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIA 465 (590)
T ss_pred ---------ecccc---cCCCCCcHHHHHHHHh---hhc---ChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHH
Confidence 00000 0012233333332110 111 1123567899999997 567999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+.+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||+|++|++ ++..+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~ 534 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKH 534 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceee
Confidence 9999999999999999999999999999999875 67999999999999999999999965 66554
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=277.30 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=143.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+++ +||+|++|+++||+|+|||||||||++|+|. ..|.+|.|.+.+.++.... .
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~i~~~~----~---- 69 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI--MQPSSGNIYYKNCNINNIA----K---- 69 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCcccChhh----h----
Confidence 378999999998877776 9999999999999999999999999999985 4678899998886552110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....++.+. ....+..++.+++.... .. .....++..+++.+++. ...++.+.+|||||+||++|||
T Consensus 70 ---~~~~~~~~~---~~~~~~~tv~~~l~~~~-~~-----~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~ 136 (195)
T PRK13541 70 ---PYCTYIGHN---LGLKLEMTVFENLKFWS-EI-----YNSAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIAR 136 (195)
T ss_pred ---hhEEeccCC---cCCCccCCHHHHHHHHH-Hh-----cccHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHH
Confidence 001111111 01123344555443211 01 11245677889999997 4568899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrI 359 (548)
||+.+|++|||||||++||+.++.++.++|.. .+.|||+||||+.++.. ||.|
T Consensus 137 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999999998863 35899999999998865 6644
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.48 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=138.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-EeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-YCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
++|+||||+|++|+++||+|||||||||||++|+|. ..|.+|+|. +.+..+... .
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~~~sG~i~~~~~~~~~~~----------~------------ 56 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--DAPDEGDFIGLRGDALPLG----------A------------ 56 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCCCEEEecCceeccc----------c------------
Confidence 479999999999999999999999999999999985 467888885 444322100 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
........+..+++..... . .+. ........++..+++.. ..++++..||||||||++|||||+.+|++|||||
T Consensus 57 -~~~l~~~ltv~enl~~~~~-~--~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE 130 (213)
T PRK15177 57 -NSFILPGLTGEENARMMAS-L--YGL-DGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG 130 (213)
T ss_pred -ccccCCcCcHHHHHHHHHH-H--cCC-CHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0001122344444432111 1 111 11222233445667764 5688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhh-c-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 319 PTNHLDLNAVIWLDNYLQG-W-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~-~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||++||+.+...+.++|.. . +.|+|+||||+.++..+||+|++|++|++++ .++-+..
T Consensus 131 P~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 190 (213)
T PRK15177 131 KLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM-CEDLAQA 190 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE-eCCHHHH
Confidence 9999999999888887643 2 4689999999999999999999999999985 4665554
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=318.81 Aligned_cols=210 Identities=20% Similarity=0.334 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.+++.++...+...+...+
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV--YDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC--CCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999975 5799999999999999999999999999999999984 578899999988876433322222111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-----------CCChhhhhcccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-----------GFSRAMQDRATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~~~~~L 293 (548)
.++.+. ...+..+..+++.. ......++.+..++... |+.. ........|
T Consensus 412 -------~~v~q~----~~lf~~ti~~Ni~~-------~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t-~~~~~~~~L 472 (585)
T TIGR01192 412 -------ATVFQD----AGLFNRSIRENIRL-------GREGATDEEVYEAAKAAAAHDFILKRSNGYDT-LVGERGNRL 472 (585)
T ss_pred -------EEEccC----CccCcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhccccccc-hhcCCCCCC
Confidence 111111 11223333333311 00111122233333322 3332 345567789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+|||+.+.+. .||+|++|++|+++. .
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~ 550 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-K 550 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999999998775 579999999999995 599999999999986 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|+++++.
T Consensus 551 g~~~~l~ 557 (585)
T TIGR01192 551 GSFQELI 557 (585)
T ss_pred CCHHHHH
Confidence 7776653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=316.92 Aligned_cols=209 Identities=24% Similarity=0.424 Sum_probs=154.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|.|.+++.++...+...+...
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI--WPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEehhhCCHHHHhhh
Confidence 5999999999954 5799999999999999999999999999999999985 46888999998887643332222211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHH---------HHHHHhC--CCChhhhhcccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA---------RRILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---------~~~L~~l--gl~~~~~~~~~~~ 292 (548)
+. +.++. ...+..+..+++. .......++++ .++++.+ |++. .......+
T Consensus 394 i~-------~v~q~----~~lf~~ti~~Ni~-------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t-~~~~~g~~ 454 (544)
T TIGR01842 394 IG-------YLPQD----VELFPGTVAENIA-------RFGENADPEKIIEAAKLAGVHELILRLPDGYDT-VIGPGGAT 454 (544)
T ss_pred eE-------EecCC----cccccccHHHHHh-------ccCCCCCHHHHHHHHHHhChHHHHHhCcccccc-ccCCCcCC
Confidence 11 11111 1112223333331 01111112222 2344444 4442 34556788
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||+|++|++|+++.
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIAR 533 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998875 479999999999875 699999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+++++
T Consensus 534 ~-g~~~~l 540 (544)
T TIGR01842 534 F-GERDEV 540 (544)
T ss_pred e-CCHHHH
Confidence 4 777654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=344.85 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
+|+++||++.|++ +.+|+|+||+|.+||++||+||||||||||||+|+|. ..|.+|+|.+.|.++.. .....
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--l~ptsG~I~i~G~~i~~-~~~~~--- 2010 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--TTVTSGDATVAGKSILT-NISDV--- 2010 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECcc-hHHHH---
Confidence 5999999999986 5799999999999999999999999999999999985 46889999998887632 11111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..++.++. .......++.+++.. +..+........+.++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 2011 ----r~~IGy~pQ~---~~L~~~LTv~E~L~l-~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2011 ----HQNMGYCPQF---DAIDDLLTGREHLYL-YARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred ----hhhEEEEecc---ccCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHH
Confidence 0111222221 112234556665532 222222222223456778999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+||+.+|+||||||||+|||+.++..+.++|.++ +.|||++||+++++..+||||++|.+|+++.. |+.+...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~-Gs~q~Lk 2158 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL-GTIQHLK 2158 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 99999999999999999999999999999988764 57999999999999999999999999999865 6665543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=313.60 Aligned_cols=211 Identities=22% Similarity=0.377 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|..+ ++|+|+||+|++|+++|||||||+||||+..+|.. ++.|.+|+|.++|.++...+...+.
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r--fY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR--FYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCeehhhcCHHHHH
Confidence 469999999999765 59999999999999999999999999999999985 5789999999999988766554443
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH---------HHHHHHHhC--CCChhhhhccc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP---------RARRILAGL--GFSRAMQDRAT 290 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---------~~~~~L~~l--gl~~~~~~~~~ 290 (548)
..+ +++.|. ...|..+..+|+.. ... ...++ .+.+.+..| |++. ....+.
T Consensus 542 ~~I-------g~V~QE----PvLFs~sI~eNI~Y------G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T-~VGEkG 602 (716)
T KOG0058|consen 542 RKI-------GLVGQE----PVLFSGSIRENIAY------GLD-NATDEEIEAAAKMANAHEFITNFPDGYNT-VVGEKG 602 (716)
T ss_pred HHe-------eeeecc----ceeecccHHHHHhc------CCC-CCCHHHHHHHHHHhChHHHHHhCcccccc-ccCCcc
Confidence 322 223222 22344455554421 001 11111 122333333 4432 345566
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+||||||||+||||||+.+|.||||||.||+||.++...+.+.|.+. +.|||+|.|.++.+.+ ||+|+++++|+++
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV 681 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE
Confidence 789999999999999999999999999999999999988888888654 4899999999999975 9999999999999
Q ss_pred EEcCCHHHHH
Q psy11936 369 YYKGNYSMFK 378 (548)
Q Consensus 369 ~~~g~y~~f~ 378 (548)
+. |++++..
T Consensus 682 E~-G~h~eLl 690 (716)
T KOG0058|consen 682 EM-GTHDELL 690 (716)
T ss_pred ec-ccHHHHh
Confidence 75 7777654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.38 Aligned_cols=211 Identities=23% Similarity=0.334 Sum_probs=158.9
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|+|.+++.++...+...++..
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~--~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL--YTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEehhhCCHHHHHHh
Confidence 5999999999953 5699999999999999999999999999999999984 57889999999988765443333222
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+....+. ...+..+..+++. ........+.+.++++..|+.+. .......+|
T Consensus 533 i~~v~q~-----------~~lf~~ti~eNi~-------~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 533 MGVVLQE-----------NVLFSRSIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred CeEEccC-----------CeehhhhHHHHHh-------cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 2111111 1122333333331 11112234444555555544321 223445789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+.. ||+|++|++|+++..
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~- 672 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAES- 672 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEe-
Confidence 999999999999999999999999999999999999999999876 4799999999999865 999999999999864
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 673 g~~~~l~ 679 (694)
T TIGR01846 673 GRHEELL 679 (694)
T ss_pred CCHHHHH
Confidence 7777654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.31 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=157.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|+|.++++++...+...+...
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc--cCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 5899999999964 5699999999999999999999999999999999984 57889999999887654332222221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+ .+..+. ...+..+..+++. .......++.+..+++..++.+. ..+.....|
T Consensus 391 i-------~~v~q~----~~lf~~ti~~Ni~-------~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 452 (569)
T PRK10789 391 L-------AVVSQT----PFLFSDTVANNIA-------LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452 (569)
T ss_pred e-------EEEccC----CeeccccHHHHHh-------cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC
Confidence 1 111111 1122334444331 11112234455555665555321 123345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||+|++|++|+++..
T Consensus 453 SgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~- 530 (569)
T PRK10789 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQR- 530 (569)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEe-
Confidence 999999999999999999999999999999999999999999875 579999999999886 5999999999999865
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 531 g~~~~l~ 537 (569)
T PRK10789 531 GNHDQLA 537 (569)
T ss_pred cCHHHHH
Confidence 7766543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=343.35 Aligned_cols=217 Identities=21% Similarity=0.290 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||++.|+ ++.+|+|+||+|.+|+++||+|+|||||||||++|+|. ..|.+|+|.+.|.++.. .....+
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL--l~PtsG~I~i~G~dI~~-~~~~~r-- 1002 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDIET-NLDAVR-- 1002 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC--CCCCceEEEECCEECcc-hHHHHh--
Confidence 599999999995 57899999999999999999999999999999999985 46889999998877632 111110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..++..+. .......++.+++... ..+........+.++.++|+.+|+.+ ..++++.+|||||||||+|
T Consensus 1003 -----~~IG~~pQ~---~~L~~~LTV~E~L~f~-~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1003 -----QSLGMCPQH---NILFHHLTVAEHILFY-AQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred -----hcEEEEecC---CcCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHH
Confidence 111122211 1122345666655421 12222212233567889999999974 5789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+||+.+|+||||||||+|||+.++..+.++|+++ +.|||++|||++++..+||||++|++|+++.. |+.....
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~-Gs~~~Lk 1148 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS-GTPLFLK 1148 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-cCHHHHH
Confidence 99999999999999999999999999999999876 57999999999999999999999999999865 5555443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.85 Aligned_cols=201 Identities=24% Similarity=0.299 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCc-----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKGN-----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~-----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.|+++||+|+|++. ++|+|+||+|++|++++|+||||||||||+++|+|. ..|.+|.|.+++.++...+...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH
Confidence 59999999999752 599999999999999999999999999999999974 57899999999987754433322
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh-----cccCCCCH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD-----RATKNFSG 295 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----~~~~~LSG 295 (548)
...+....+...+ +..+..++ ......++++.++++.+++.+.... .....|||
T Consensus 415 ~~~i~~v~q~~~l-----------f~~ti~~n----------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 415 RDLFSAIFADFHL-----------FDDLIGPD----------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred HhhCcEEccChhh-----------hhhhhhcc----------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 2221111111111 11111111 1122235567788888888743211 12357999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-h---hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-Q---GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~---~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||++|||||+.+|++|||||||++||+.+...+.+.+ . ..++|+|+|||+++.+. .||+|++|++|+++..
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998887643 2 24689999999999775 7999999999999863
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=315.02 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=158.2
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl--~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF--YDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEHHhcCHHHHHH
Confidence 4999999999964 5699999999999999999999999999999999984 4688899999988765433332222
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
. ..++++. ...+..+..+|+. .......++++.++++.+|+.+. ........
T Consensus 415 ~-------i~~~~Q~----~~lf~~Ti~~Ni~-------~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 415 R-------MALVPQD----PVLFAASVMENIR-------YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred h-------ceEEccC----CccccccHHHHHh-------cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 1 1222221 1223444444432 11112234556666666665321 11233457
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+...+. .||+|++|++|+++..
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999888876 579999999998875 5999999999999975
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+++..
T Consensus 556 -g~~~~l 561 (576)
T TIGR02204 556 -GTHAEL 561 (576)
T ss_pred -ecHHHH
Confidence 666654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=270.38 Aligned_cols=144 Identities=28% Similarity=0.358 Sum_probs=123.4
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
.||+++|+++.+++++ |+|.+|++++|+|||||||||||++|+|. ..|.+|+|.+.+..+...
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~i~~~-------------- 66 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--LIPNGDNDEWDGITPVYK-------------- 66 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCcEEEECCEEEEEE--------------
Confidence 4899999999999984 99999999999999999999999999985 467889998876532100
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+. . + .||||||||++|||||+.
T Consensus 67 ---------------~q-------------------------------------~-----~-~LSgGq~qrv~laral~~ 88 (177)
T cd03222 67 ---------------PQ-------------------------------------Y-----I-DLSGGELQRVAIAAALLR 88 (177)
T ss_pred ---------------cc-------------------------------------c-----C-CCCHHHHHHHHHHHHHhc
Confidence 00 0 0 099999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|+++-.+
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999999888888764 379999999999999999999999877443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=280.77 Aligned_cols=194 Identities=25% Similarity=0.368 Sum_probs=134.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||++. ++.+|+++||+|.+|+++||+|+|||||||||++|+|. ..|.+|.|.+.+. +....... .
T Consensus 39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--~~p~~G~I~i~g~-i~yv~q~~--~--- 108 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--LEPSEGKIKHSGR-ISFSSQFS--W--- 108 (282)
T ss_pred eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCE-EEEEeCcc--c---
Confidence 5899999985 46799999999999999999999999999999999985 3567787766442 11000000 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCCCH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNFSG 295 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LSG 295 (548)
.+..++.+++.. +......++..++..+++.. ...+..+.+|||
T Consensus 109 ------------------l~~~tv~enl~~--------~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 109 ------------------IMPGTIKENIIF--------GVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred ------------------ccccCHHHHhhc--------ccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 000011111100 00000001111222222211 122345679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
||+|||+|||||+.+|++|||||||++||+.++..+.+.+ ..+ +.|||+||||++++. .||+|++|++|+++.+ |
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~-g 240 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY-G 240 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEE-C
Confidence 9999999999999999999999999999999999887643 332 579999999999985 7999999999999865 5
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+++
T Consensus 241 ~~~~~ 245 (282)
T cd03291 241 TFSEL 245 (282)
T ss_pred CHHHH
Confidence 55554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=286.03 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=141.7
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE-----------EeceeeccCchh
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL-----------YCEQEVVADDLT 218 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~-----------~~~q~i~~~~~~ 218 (548)
||+++|++. .+|+|+|+ +.+|++++|+|||||||||||++|+|. ..|.+|.|. +.++++...
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~~~~~~~~~~~~~~g~~~~~~--- 78 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--LKPNLGKFDDPPDWDEILDEFRGSELQNY--- 78 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEeeccccchhhhhccCchhhhh---
Confidence 789999765 59999995 999999999999999999999999985 568888886 223222100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
......... ...+..+.. .. ........+. .. +.....+..+.++++.+|+.. ..++.+.+|||||+
T Consensus 79 -~~~~~~~~~-~i~~~~~~~---~~-~~~~~~~~i~---~~---l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 145 (255)
T cd03236 79 -FTKLLEGDV-KVIVKPQYV---DL-IPKAVKGKVG---EL---LKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGEL 145 (255)
T ss_pred -hHHhhhccc-ceeeecchh---cc-CchHHHHHHH---HH---hchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHH
Confidence 000000000 000000000 00 0111111111 11 112233567889999999974 56889999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
||++|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+ |++.
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence 9999999999999999999999999999998888888764 5799999999999999999999995 4443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=320.80 Aligned_cols=208 Identities=25% Similarity=0.404 Sum_probs=156.6
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|+.+ .+|+|+||.|++|+.++|||+|||||||++.+|.+ +..|..|.|.++|.++...+...++
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R--fydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR--FYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCceEEEcCccchhcchHHHH
Confidence 479999999999876 48999999999999999999999999999999997 5789999999999888665554443
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhC-----------CCChhhhhcc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGL-----------GFSRAMQDRA 289 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~l-----------gl~~~~~~~~ 289 (548)
..+ +++.|.+ ..|..+..+++. .+. +....++.++++.. |++.. ....
T Consensus 427 ~~i-------glV~QeP----vlF~~tI~eNI~--------~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~-vge~ 486 (1228)
T KOG0055|consen 427 SQI-------GLVSQEP----VLFATTIRENIR--------YGKPDATREEIEEAAKAANAHDFILKLPDGYDTL-VGER 486 (1228)
T ss_pred hhc-------Ceeeech----hhhcccHHHHHh--------cCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc-ccCC
Confidence 322 2222222 223334443331 111 11122222222211 33222 2233
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
..+|||||||||||||||+.+|+||||||||++||+++...+.+.|.+. +.|.|+|+|++..+.+ ||+|++|++|+|
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~I 565 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKI 565 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEE
Confidence 4469999999999999999999999999999999999999999999876 5799999999999987 999999999999
Q ss_pred EEEcCCHHH
Q psy11936 368 YYYKGNYSM 376 (548)
Q Consensus 368 ~~~~g~y~~ 376 (548)
++. |+.++
T Consensus 566 vE~-G~h~E 573 (1228)
T KOG0055|consen 566 VEQ-GTHDE 573 (1228)
T ss_pred EEe-cCHHH
Confidence 975 44433
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=267.25 Aligned_cols=219 Identities=21% Similarity=0.337 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec-eeeccCchhHHHH-
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE-QEVVADDLTAVES- 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~-q~i~~~~~~~~~~- 222 (548)
..|.++||+++|++..+|+++||+|.+||.-+|||||||||||+|.+|+|. ..|..|++.|.+ .++...+...+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--trp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--TRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--CCCCcceEEEcCchhhccCCHHHHHHh
Confidence 468999999999999999999999999999999999999999999999984 467789999887 4554332221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHH-------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKE-------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
-++..++... .+...++.+|+.. ++..+........+.++.++|...||.+ ..++....||-
T Consensus 82 GIGRKFQ~Pt----------Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPT----------VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSH 150 (249)
T ss_pred ccCccccCCe----------ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhcc
Confidence 0111111111 1223344444422 1112222122344568999999999985 56889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||++.|+..|+++|++||||||++|+-........++|+.+ ..+||+|.|||.|+..+|++|-+|+.|.+.. .|+
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~-EGs 229 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGS 229 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee-ccc
Confidence 9999999999999999999999999999998888888888876 3699999999999999999999999999975 588
Q ss_pred HHHH
Q psy11936 374 YSMF 377 (548)
Q Consensus 374 y~~f 377 (548)
.+..
T Consensus 230 ld~v 233 (249)
T COG4674 230 LDEV 233 (249)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=277.83 Aligned_cols=193 Identities=26% Similarity=0.360 Sum_probs=140.6
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFS 246 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (548)
|+|++|+++||+|+||||||||+++|+|. ..|.+|+|.+++.++.. .. ....++.+...+. ..+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~i~~~g~~~~~-----~~-------~~i~~v~q~~~~~-~~~~ 65 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGK-----GW-------RHIGYVPQRHEFA-WDFP 65 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCccchH-----hh-------CcEEEeccccccc-CCCC
Confidence 57899999999999999999999999984 46788999988765310 00 0111111111000 0011
Q ss_pred hhHHHHHHHHHHHH-HhcC--CCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy11936 247 SEQQEQLKEIYEEL-KAIG--ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323 (548)
Q Consensus 247 ~~~~~~l~~~~~~l-~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L 323 (548)
.++.+++....... .... ......++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 23333332110000 0010 1122356788999999974 568889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 324 DLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 324 D~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.++.++.++|.++ +.|||+||||++++..+||+|++| +|+++. .|+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~-~~~~~~~ 199 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA-DGTPQQL 199 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHHh
Confidence 999999999999865 469999999999999999999999 799985 4666654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=265.25 Aligned_cols=153 Identities=23% Similarity=0.281 Sum_probs=121.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
..+|+|+||+|.+|++++|+|||||||||||++|.+ ..|.+.+.+..... . +
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~~-~-------------~-------- 59 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPKF-S-------------R-------- 59 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccccc-c-------------c--------
Confidence 468999999999999999999999999999999863 35555544321000 0 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccC--CCEEEE
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE--PTLLLL 316 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~--P~lLLL 316 (548)
....+. . . .++|..+++.....++++.+|||||+||++|||||+.+ |++|||
T Consensus 60 --~~~~~~---~------------------q---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLl 113 (176)
T cd03238 60 --NKLIFI---D------------------Q---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFIL 113 (176)
T ss_pred --ccEEEE---h------------------H---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 000000 0 0 34678888864346888999999999999999999999 999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 317 DEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 317 DEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
||||++||+.+...+.++|.++ +.|||+|||+++++ ..||+|++|++|.
T Consensus 114 DEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 114 DEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGS 165 (176)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCC
Confidence 9999999999999999988764 68999999999998 4799999997644
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=259.04 Aligned_cols=153 Identities=38% Similarity=0.566 Sum_probs=127.8
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhH
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADV 228 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~ 228 (548)
++|+++.|.+..+|+++||+|.+|++++|+|+||||||||+++|+|. ..+..|++.+.+..+.......
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~~~~~~~~~~~~~~--------- 70 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILIDGKDIAKLPLEE--------- 70 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCccEEEECCEEcccCCHHH---------
Confidence 67999999888899999999999999999999999999999999985 3577899988876542110000
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc
Q psy11936 229 KRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY 308 (548)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 308 (548)
+...+++ +.+|||||+||++|||+|+
T Consensus 71 ----------------------------------------------~~~~i~~--------~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 71 ----------------------------------------------LRRRIGY--------VPQLSGGQRQRVALARALL 96 (157)
T ss_pred ----------------------------------------------HHhceEE--------EeeCCHHHHHHHHHHHHHh
Confidence 0001111 1129999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.+|+++||||||++||+.++.++.++|..+ +.|+|+|||+++++..+||++++|++|+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999998765 3699999999999999999999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=259.66 Aligned_cols=220 Identities=23% Similarity=0.299 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.+++.++|+.|++..-++||||.+.+||++||||.|||||||||+||++. ..|..|.|.|....-...+.-.......
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 58899999999999999999999999999999999999999999999986 3688899988653221111111100000
Q ss_pred hhHH--HHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 226 ADVK--RTELLAECAKLEAAD---FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 226 ~~~~--~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...- ..++..+.......+ ...+..+.+..+- ..........+..+|+.+.++....+..|.++||||+||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 0000 011111111000000 0111122221110 011123566788999999998777788899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
+.|||-|+..|.++++||||.+||...+..|.++++. ++.++||||||+..+.-+++|.++|.+|++++.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 9999999999999999999999999988888887765 4679999999999999999999999999998753
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=307.04 Aligned_cols=196 Identities=26% Similarity=0.409 Sum_probs=149.6
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEehhhCCHHHHHhh
Confidence 5999999999976 3699999999999999999999999999999999984 57889999999987754443322221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+ .++.+. ...+..+..+++.. ......++.+.++++..++.+. .......+|
T Consensus 398 i-------~~v~Q~----~~lf~~ti~~Ni~~-------~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L 459 (529)
T TIGR02857 398 I-------AWVPQH----PFLFAGTIAENIRL-------ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL 459 (529)
T ss_pred e-------EEEcCC----CcccCcCHHHHHhc-------cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC
Confidence 1 122221 12234455554421 1112234566667777666431 123345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ ++|+|+|||+++.+. .||+|++|
T Consensus 460 SgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 999999999999999999999999999999999999999999875 579999999999985 69999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=334.34 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=161.7
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC----------------------
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---------------------- 200 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---------------------- 200 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|. ..|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~--ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF--YDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh--CCCcccccccccccccccccccccc
Confidence 5999999999963 4799999999999999999999999999999999985 333
Q ss_pred --------------------------------CCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 201 --------------------------------PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 201 --------------------------------~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
.+|.|.++|.++...+...++..+ +++.|. ...|..+
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i-------~~V~Qe----p~LF~gT 1311 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF-------SIVSQE----PMLFNMS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhc-------cEeCCC----Ccccccc
Confidence 589999999888655544443322 222222 2234555
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
..+++.. -.....++.+.++++..++.+. ........||||||||++|||||+.+|+||||||
T Consensus 1312 IreNI~~-------g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1312 IYENIKF-------GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred HHHHHhc-------CCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5555421 1112234455666665554321 1233456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC----CEEEEEcCCHHHHH
Q psy11936 319 PTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ----QKLYYYKGNYSMFK 378 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~----G~i~~~~g~y~~f~ 378 (548)
|||+||.++...+.+.|.+. +.|+|+|||++..+. .||+|++|++ |+++...|++++..
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999988875 579999999999986 4999999999 89765568888764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.52 Aligned_cols=217 Identities=21% Similarity=0.251 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++|++++|++ ..+|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|++.++++++...+...+.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--DKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEcCcCCHHHHH
Confidence 5899999999953 4699999999999999999999999999999999985 467899999999876543322111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
... .+...+..+.. ..+...+..+++.... ............++.++++.+|+.. ..++.+.+|||||+||+
T Consensus 82 ~~~---~~~i~~v~q~~---~l~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv 153 (648)
T PRK10535 82 QLR---REHFGFIFQRY---HLLSHLTAAQNVEVPA-VYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRV 153 (648)
T ss_pred HHH---hccEEEEeCCc---ccCCCCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHH
Confidence 000 00111111111 1112234444443211 1111111223456788999999974 57899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
+|||||+.+|++|||||||++||+.++.++.++|.++ +.|+|+|||+++++. .||++++|++|+++..+..
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998765 579999999999886 6999999999999977554
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=314.51 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=159.6
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|...+...+|+|.++++++... .
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~----~------- 138 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ----I------- 138 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh----h-------
Confidence 36688999999999999999999999999999999999999999998632112379999988765210 0
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCChhh----hhcccCCCCHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSRAM----QDRATKNFSGGWRMR 300 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~----~~~~~~~LSGGqkqR 300 (548)
.+..+++.+. .......++.+++... ..+..... .+...++.++++.+|+.+.. .++.+..||||||||
T Consensus 139 ~~~i~yv~Q~---~~l~~~lTV~E~l~~~-a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR 214 (659)
T PLN03211 139 LKRTGFVTQD---DILYPHLTVRETLVFC-SLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214 (659)
T ss_pred ccceEEECcc---cccCCcCCHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH
Confidence 0111222221 1112234566555321 11110011 11235678899999996421 244577899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+||++|+.+|+||||||||+|||+.+..++.++|+++ +.|||++||+++ .+..+||+|++|++|++++. |+.++
T Consensus 215 v~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~-G~~~~ 293 (659)
T PLN03211 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF-GKGSD 293 (659)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE-CCHHH
Confidence 99999999999999999999999999999999998864 579999999998 47789999999999999854 66655
Q ss_pred HHH
Q psy11936 377 FKK 379 (548)
Q Consensus 377 f~~ 379 (548)
...
T Consensus 294 ~~~ 296 (659)
T PLN03211 294 AMA 296 (659)
T ss_pred HHH
Confidence 443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=332.07 Aligned_cols=210 Identities=22% Similarity=0.298 Sum_probs=162.2
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ .++|+|+||+|++||++||||+||||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl--~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI--VELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc--CCCCCceEEECCEecccCCHHHHHhc
Confidence 5999999999964 3699999999999999999999999999999999974 57889999999998866554444332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+. +++|. ...|..+..+|+.. +....++.+.++|+..++.+. .......+|
T Consensus 1315 Is-------iVpQd----p~LF~GTIreNLd~--------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nL 1375 (1622)
T PLN03130 1315 LG-------IIPQA----PVLFSGTVRFNLDP--------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375 (1622)
T ss_pred cE-------EECCC----CccccccHHHHhCc--------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCC
Confidence 22 22221 12234455444421 112234456666666555321 122334689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+|||||||||+||..+...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~- 1453 (1622)
T PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF- 1453 (1622)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 5899999999999976 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 1454 Gt~~eLl 1460 (1622)
T PLN03130 1454 DTPENLL 1460 (1622)
T ss_pred CCHHHHH
Confidence 6666554
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=331.14 Aligned_cols=210 Identities=20% Similarity=0.318 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ .++|+|+||+|++|+++||||+||||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI--VELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCceEEECCEEhhhCCHHHHHhh
Confidence 5999999999953 4799999999999999999999999999999999974 57889999999998865544433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. +....++.+.++|+..++.+.. ......+|
T Consensus 1312 i-------~iVpQd----p~LF~gTIr~NL~~--------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1372 (1495)
T PLN03232 1312 L-------SIIPQS----PVLFSGTVRFNIDP--------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372 (1495)
T ss_pred c-------EEECCC----CeeeCccHHHHcCC--------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC
Confidence 2 222221 12234455544421 1122345566666666654321 22334579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+++|+|||||||||+||.++...+.+.|++. ++|+|+|+|+++.+.. ||+|++|++|+++++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~- 1450 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY- 1450 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999875 5799999999999976 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 1451 Gt~~eLl 1457 (1495)
T PLN03232 1451 DSPQELL 1457 (1495)
T ss_pred CCHHHHH
Confidence 6666654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=259.99 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=168.3
Q ss_pred ccEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++|+++||+.+.+++ .||++|||+|++||+.+|+||||||||||.++|+|..-+..+.|+|.+.++++...........
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 469999999999985 9999999999999999999999999999999999976667889999999999876543321110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC--CCChHHHHHHHHHhCCCChhhhhcccC-CCCHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG--ADSAEPRARRILAGLGFSRAMQDRATK-NFSGGWRMR 300 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqkqR 300 (548)
...+.+|. .......+..+.+...+....... .......+++.++.++++..+++|++. .||||||+|
T Consensus 82 ------GifLafQ~---P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 82 ------GIFLAFQY---PVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred ------CCEEeecC---CccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 00011111 111122233333322111111100 123466788999999999889999986 599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~ 373 (548)
..|+.+++.+|++.|||||-||||+.+...+.+.+..+ +.++|+|||....++.+ .|++.+|-+|+|+..+++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999988887776655 57999999999999876 399999999999976544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=302.98 Aligned_cols=183 Identities=26% Similarity=0.372 Sum_probs=138.8
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ +++|+|+||+|++|++++||||||||||||+++|+|. ..|.+|+|.++++++... ...++..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~i~g~~i~~~-~~~lr~~- 409 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL--LDPLQGEVTLDGVSVSSL-QDELRRR- 409 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhH-HHHHHhh-
Confidence 5999999999975 5699999999999999999999999999999999974 578899999999877533 2222221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
..+++|. ...++.+..+|+.. ......++++.++++..++.+.. .......||
T Consensus 410 ------i~~V~Q~----~~lF~~TI~eNI~~-------g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 410 ------ISVFAQD----AHLFDTTVRDNLRL-------GRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ------eEEEccC----cccccccHHHHHhc-------cCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 1222221 12244455555421 11223456677777777765321 122345699
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQ 349 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~ 349 (548)
||||||++|||||+.+|+|||||||||+||..+...+.+.|.+. ++|+|+|||++
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999876 57999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=305.42 Aligned_cols=184 Identities=21% Similarity=0.329 Sum_probs=139.8
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE--------eceeeccCc
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY--------CEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~--------~~q~i~~~~ 216 (548)
.|+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|. ..+.+|.|.+ ..|+....
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl--~~~~~G~i~~~~~~~i~~v~Q~~~l~- 527 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL--WPVYGGRLTKPAKGKLFYVPQRPYMT- 527 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCeEeecCCCcEEEECCCCCCC-
Confidence 599999999995 56899999999999999999999999999999999985 3455665543 33322111
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc-CCCChHHHHHHHHHhCCCChhhhhcc------
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI-GADSAEPRARRILAGLGFSRAMQDRA------ 289 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~L~~lgl~~~~~~~~------ 289 (548)
..+..+++..... .... .....+.++.++++.+|+.+ ..+++
T Consensus 528 -----------------------------~~tv~eni~~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~ 576 (659)
T TIGR00954 528 -----------------------------LGTLRDQIIYPDS-SEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSAV 576 (659)
T ss_pred -----------------------------CcCHHHHHhcCCC-hhhhhccCCCHHHHHHHHHHcCCHH-HHhhcCCcccc
Confidence 1122222210000 0000 01123455677888888864 33443
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 290 ---TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 290 ---~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
..+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||++++ ..||+|++|+.
T Consensus 577 ~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 577 QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 378999999999999999999999999999999999999999999999889999999999987 57999999963
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=326.02 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|.+ ..+|+||||+|.+|+++||||++|||||||+++|.|. ..|.+|.|.++|.++...+...++..
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--VEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEEcccCCHHHHHhc
Confidence 5999999999964 3599999999999999999999999999999999974 57889999999998865554443322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. .....++.+.++|+..|+.+.. ......+|
T Consensus 1386 I-------~iVpQd----p~LF~gTIreNIdp--------~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1386 F-------SMIPQD----PVLFDGTVRQNVDP--------FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred c-------eEECCC----CccccccHHHHhCc--------ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 2 222221 12344555555421 1122356677778777775321 12233679
Q ss_pred CHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIE-PTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~-P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||++|||||+.+ |+|||||||||+||..+...+.+.|.+. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM 1525 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999995 8999999999999999999999999874 5799999999999965 999999999999987
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 1526 -Gt~~eLl 1532 (1560)
T PTZ00243 1526 -GSPRELV 1532 (1560)
T ss_pred -CCHHHHH
Confidence 6666543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=326.42 Aligned_cols=209 Identities=20% Similarity=0.282 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|+. .++|+|+||+|++|+++||||++|||||||+++|.|. ..|.+|+|.++|.++...+...++..
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl--~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI--NESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--ccCCCCeEEECCEEccccCHHHHHhc
Confidence 5999999999964 4699999999999999999999999999999999974 57889999999999866554444332
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 293 (548)
+. +++|. ...|..+..+|+.. .+ ...++.+.++|+..++.+. ........|
T Consensus 1362 i~-------iVpQd----p~LF~gTIr~NLdp-------~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1362 IT-------IIPQD----PVLFSGSLRMNLDP-------FS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred Ce-------EECCC----CcccCccHHHHcCc-------cc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 22 22221 12234454444421 11 2234455666666655421 112234579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||.++...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+|+++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~- 1500 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF- 1500 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999864 5799999999999976 999999999999987
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
|++++.
T Consensus 1501 G~~~eL 1506 (1522)
T TIGR00957 1501 GAPSNL 1506 (1522)
T ss_pred CCHHHH
Confidence 565554
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=322.15 Aligned_cols=206 Identities=21% Similarity=0.342 Sum_probs=150.2
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe-ceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC-EQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~-~q~i~~~~~~~~~ 221 (548)
.|+++||+|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|. ..|.+|.|.++ +.++...+...++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL--YDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh--ccCCCCeEEEeCCcchhhCCHHHHH
Confidence 5999999999975 3699999999999999999999999999999999984 57889999985 4554332222222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH--------------------------------------------
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIY-------------------------------------------- 257 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------- 257 (548)
..+. ++.+.. ..+..+..+++....
T Consensus 460 ~~Ig-------~V~Q~~----~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 460 SKIG-------VVSQDP----LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred Hhcc-------Eecccc----cchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 2111 222111 112223333332100
Q ss_pred ----HHHHh--cCCCChHHHHHHHHHhCCCChhh----------hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 258 ----EELKA--IGADSAEPRARRILAGLGFSRAM----------QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 258 ----~~l~~--~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
+.+.. ......++.+.++++.+++.+.. ....+.+|||||||||+|||||+.+|+||||||||+
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 00000 00012345677777777775321 245678899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 322 HLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 322 ~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+||+.+...+.+.|.++ +.|+|+|||+++.+ ..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 99999999999999876 47999999999998 579999999986
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=263.89 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=87.4
Q ss_pred HHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEec
Q psy11936 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347 (548)
Q Consensus 273 ~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSH 347 (548)
.++|..+|+.....++++.+|||||+|||+|||||+.+| ++|||||||++||+.++..+.++|..+ +.|||+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 568999999754568899999999999999999999998 599999999999999999998888654 579999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEE
Q psy11936 348 DQSFLDNVCNEIIHL------DQQKLYYY 370 (548)
Q Consensus 348 D~~~l~~vadrIi~L------~~G~i~~~ 370 (548)
|++++ .+||+|++| ++|+|+++
T Consensus 198 ~~~~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 198 DEDTI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred CHHHH-HhCCEEEEeCCCccccCCEEEec
Confidence 99998 489999999 89999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-32 Score=281.65 Aligned_cols=184 Identities=27% Similarity=0.344 Sum_probs=137.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q psy11936 177 LVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI 256 (548)
Q Consensus 177 LvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 256 (548)
|+|||||||||||++|+|. ..|.+|+|.+.+.++..... .. +...++++.. ..+...++.+++...
T Consensus 1 l~G~nGsGKSTLl~~iaGl--~~p~~G~I~i~g~~i~~~~~--~~-------~~i~~v~q~~---~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF--EQPDSGSIMLDGEDVTNVPP--HL-------RHINMVFQSY---ALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC--CCCCceEEEECCEECCCCCH--HH-------CCEEEEecCc---cccCCCcHHHHHHHH
Confidence 6899999999999999985 46889999998887632111 00 0111112111 112234555555322
Q ss_pred HHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q psy11936 257 YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ 336 (548)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~ 336 (548)
.. +..........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.
T Consensus 67 ~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~ 144 (325)
T TIGR01187 67 LK-MRKVPRAEIKPRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELK 144 (325)
T ss_pred Hh-hcCCCHHHHHHHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11 111111122456788999999974 6789999999999999999999999999999999999999999999998887
Q ss_pred hc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 337 GW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 337 ~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
++ +.|||+||||++++..+||+|++|++|++... |+.+++
T Consensus 145 ~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~-g~~~~~ 188 (325)
T TIGR01187 145 TIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQI-GTPEEI 188 (325)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 64 57999999999999999999999999999865 555443
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=252.12 Aligned_cols=221 Identities=16% Similarity=0.284 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCc---------eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc
Q psy11936 146 DIKVENFSISAKGN---------DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~~~---------~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~ 216 (548)
.++++|+++.|..+ .+++.|||++..|+.+||||.||||||||.|+|+|. ..|++|+|.++++.+...+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--i~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--IEPTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--cCCCCceEEECCccccccc
Confidence 47889999987432 378999999999999999999999999999999984 5789999999999886655
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH-HHh---cCCCChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE-LKA---IGADSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
.......++ ++++. .+..++ ...++..+.+. +.. +......+++.+.|..+|+.++..+-++..
T Consensus 82 y~~R~k~IR-------MiFQD---pnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~ 149 (267)
T COG4167 82 YSFRSKRIR-------MIFQD---PNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM 149 (267)
T ss_pred hHhhhhhee-------eeecC---CccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhh
Confidence 432222111 11111 011111 11122222211 111 112233456778899999988888999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
||-||||||+|||||+.+|.|+|.||..++||...+..|.++..+ .+.+.|.|+.++..+..++|.|++|+.|+++
T Consensus 150 la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 999999999999999999999999999999999998888887654 4789999999999999999999999999999
Q ss_pred EEcCCHHHHHHH
Q psy11936 369 YYKGNYSMFKKM 380 (548)
Q Consensus 369 ~~~g~y~~f~~~ 380 (548)
+|+.+-+.|...
T Consensus 230 E~G~t~~v~a~P 241 (267)
T COG4167 230 ERGSTADVLASP 241 (267)
T ss_pred ecCChhhhhcCC
Confidence 998777766543
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=306.65 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=164.2
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+|+|+.+ ++|+|+||+|++|+.+||||||||||||.+.+|-. ++.|..|.|.++++++...+...++
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR--fYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER--FYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH--hcCCCCCeEEECCcccccCCHHHHH
Confidence 369999999999765 59999999999999999999999999999999985 5789999999999998776665554
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHH---------HHhC--CCChhhhhccc
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRI---------LAGL--GFSRAMQDRAT 290 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~---------L~~l--gl~~~~~~~~~ 290 (548)
..+ +++.|.+ ..|+.+..+|+.. +. ..-.+..+.++ +..| |++. ....+.
T Consensus 1064 ~~i-------~lVsQEP----~LF~~TIrENI~Y------G~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT-~vGerG 1124 (1228)
T KOG0055|consen 1064 KQI-------GLVSQEP----VLFNGTIRENIAY------GS-EEVSEEEIIEAAKLANAHNFISSLPQGYDT-RVGERG 1124 (1228)
T ss_pred Hhc-------ceeccCc----hhhcccHHHHHhc------cC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccC-ccCccc
Confidence 332 2232222 2234444444321 00 11122233333 3322 4443 334556
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+||||||||+||||||+.+|+||||||.||+||.++...+.+.|.+. +.|.|+|.|.+..+.+ ||.|+||++|+|+
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVV 1203 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEE
Confidence 789999999999999999999999999999999999999999999875 5799999999999975 9999999999999
Q ss_pred EEcCCHHHHHH
Q psy11936 369 YYKGNYSMFKK 379 (548)
Q Consensus 369 ~~~g~y~~f~~ 379 (548)
+ .|+.++..+
T Consensus 1204 E-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1204 E-QGTHDELLA 1213 (1228)
T ss_pred e-cccHHHHHh
Confidence 7 588887655
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=321.46 Aligned_cols=209 Identities=19% Similarity=0.322 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|+. .++|+|+||+|++|+++||||+||||||||+++|+|. . +.+|+|.++|.++...+...++..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~--~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-L--STEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-c--CCCcEEEECCEEcccCCHHHHHhc
Confidence 5999999999963 6799999999999999999999999999999999985 2 368999999998865544433322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh------hc----ccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ------DR----ATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~------~~----~~~~L 293 (548)
+ .+++|. ...|..+..+|+.. . ....++.+.++|+.+++.+... +. ....|
T Consensus 1294 i-------s~IpQd----p~LF~GTIR~NLdp-------~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL 1354 (1490)
T TIGR01271 1294 F-------GVIPQK----VFIFSGTFRKNLDP-------Y-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354 (1490)
T ss_pred e-------EEEeCC----CccCccCHHHHhCc-------c-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC
Confidence 2 222221 22345566555521 1 1224567777888887753221 11 22479
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|||||||++|||||+.+|+||||||||++||..+...+.+.|++. ++|||+|||+++.+.. ||+|++|++|+|+++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~- 1432 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY- 1432 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999999875 5799999999999875 999999999999987
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++....
T Consensus 1433 g~p~~Ll 1439 (1490)
T TIGR01271 1433 DSIQKLL 1439 (1490)
T ss_pred CCHHHHH
Confidence 5555443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=249.57 Aligned_cols=213 Identities=26% Similarity=0.277 Sum_probs=156.4
Q ss_pred EEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 147 IKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 147 I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
|.+.|+.+.|.. +++|+++||+|..|+++.|+|.|||||||||++|+|. ..|++|.|.++++++.........
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--LKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--cccCCceEEECceecccCCHHHHh
Confidence 566777777632 4699999999999999999999999999999999985 478899999999998654432222
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCC---CChHHHHHHHHHhC--CCChhhhhcccCCCC
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGA---DSAEPRARRILAGL--GFSRAMQDRATKNFS 294 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~---~~~~~~~~~~L~~l--gl~~~~~~~~~~~LS 294 (548)
..+...+ |.+ .......++..+++.....+-.. ++. .......++-+..+ ||. ..++.++.-||
T Consensus 80 ~~larVf-------Qdp-~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLS 150 (263)
T COG1101 80 NLLARVF-------QDP-LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLS 150 (263)
T ss_pred hHHHHHh-------cch-hhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhcc
Confidence 2221111 111 11122345666665432221001 111 11223344556665 444 35688899999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~----L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||-|+|+.|-+..|+||||||-|++|||.+...+++. +.+.+.|.+||||+++.+-.+.+|.|+|+.|+|+..
T Consensus 151 GGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred chHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999988777654 455678999999999999999999999999999863
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=263.84 Aligned_cols=206 Identities=26% Similarity=0.322 Sum_probs=155.0
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKR 230 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~ 230 (548)
|+.+.+|+. -=+++|+++.-.+++|.|+||||||||+|+|+|+ ..|..|.|..++..+....... .+....++
T Consensus 5 ~~~~~lG~~--~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--~rPdeG~I~lngr~L~Ds~k~i---~lp~~~Rr 77 (352)
T COG4148 5 NFRQRLGNF--ALDANFTLPARGITALFGPSGSGKTSLINMIAGL--TRPDEGRIELNGRVLVDAEKGI---FLPPEKRR 77 (352)
T ss_pred ehhhhcCce--EEEEeccCCCCceEEEecCCCCChhhHHHHHhcc--CCccccEEEECCEEeecccCCc---ccChhhhe
Confidence 344455543 2378999987689999999999999999999984 5899999999887664322110 01112233
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
.+|+++...+ ++..++..|+.. +.+. .......+...+|+. .+++++|.+|||||||||+|+|||+.
T Consensus 78 iGYVFQDARL---FpH~tVrgNL~Y--------G~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt 145 (352)
T COG4148 78 IGYVFQDARL---FPHYTVRGNLRY--------GMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLT 145 (352)
T ss_pred eeeEeecccc---ccceEEecchhh--------hhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhc
Confidence 4444443322 233344333321 1222 345677899999997 57899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
.|++||||||.++||......++-||.++ +..|++|||.++++.++||+|++|++|++..++..-+
T Consensus 146 ~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 146 APELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHH
Confidence 99999999999999999888888877654 6799999999999999999999999999998854433
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=252.67 Aligned_cols=189 Identities=23% Similarity=0.290 Sum_probs=144.2
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
..+|+||||+|++||++||||+||||||||||+|+| +..|++|.|...+.-.......
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG--i~~Pt~G~v~v~G~v~~li~lg-------------------- 97 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG--IYKPTSGKVKVTGKVAPLIELG-------------------- 97 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC--ccCCCCceEEEcceEehhhhcc--------------------
Confidence 468999999999999999999999999999999998 4678899888766532110000
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
.......+..+++.. ...+.++...+.+.+++++.+.-.|. +..+.|+.++|-||+.|+++|-|...+|+||||||
T Consensus 98 --~Gf~pelTGreNi~l-~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 98 --AGFDPELTGRENIYL-RGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred --cCCCcccchHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 000112233333321 11222233344566777777777775 47899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 319 PTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
-.+-.|+.-++.-.+.+.++ +.|||+||||+.++.++||++++|++|++..++..
T Consensus 174 vlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 174 VLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH
Confidence 99999998766655555544 48999999999999999999999999999987544
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=271.05 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=165.7
Q ss_pred cccEEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 144 AVDIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 144 ~~~I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
...|++.+|+|.|... .++.++++.++.-++++++|+||+||||+++++.|.+ .|..|.+...+.--.
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l--~~~rgi~~~~~r~ri-------- 429 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL--TPTRGIVGRHPRLRI-------- 429 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC--Ccccceeeeccccee--------
Confidence 3579999999999654 4899999999999999999999999999999999853 445554443322100
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.++.+...- .++.. ....+.+.....-..++.++.-|..||++.++..+++.+||||||-||
T Consensus 430 ----------~~f~Qhhvd---~l~~~-----v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv 491 (582)
T KOG0062|consen 430 ----------KYFAQHHVD---FLDKN-----VNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV 491 (582)
T ss_pred ----------cchhHhhhh---HHHHH-----hHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHH
Confidence 000000000 00000 011112222222236778899999999999888889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~ 381 (548)
+||.+...+|.+|+|||||||||.++...|...|+.|++.||+||||.+|+..+|+.+|+.++|++..+.|..+.|.+..
T Consensus 492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~ 571 (582)
T KOG0062|consen 492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLL 571 (582)
T ss_pred HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998886543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=242.78 Aligned_cols=190 Identities=23% Similarity=0.314 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+++.+||+...+.+.+|.++||+|.+||.+-|.||||||||||||+|+|+ ..|..|.|.+.+..+.....+ +..
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--l~p~~G~v~~~~~~i~~~~~~-~~~--- 75 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAGEVYWQGEPIQNVRES-YHQ--- 75 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--cCCCCCeEEecCCCCccchhh-HHH---
Confidence 46788999999999999999999999999999999999999999999985 578999999987765432110 100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..-++.. ....-..+++.+++.... .+ ........+.++|+.+||.. ..+.++.+||-|||+||+|||
T Consensus 76 ----~l~yLGH---~~giK~eLTa~ENL~F~~-~~---~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlAr 143 (209)
T COG4133 76 ----ALLYLGH---QPGIKTELTALENLHFWQ-RF---HGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALAR 143 (209)
T ss_pred ----HHHHhhc---cccccchhhHHHHHHHHH-HH---hCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHH
Confidence 0011111 111112456666664322 22 22234567888999999984 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLD 353 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~ 353 (548)
.+++.+++.||||||++||..++..|..++... ++.||++||..-.+.
T Consensus 144 L~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 144 LWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999999999999999988753 678999999876553
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=310.84 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=159.0
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.|+++||++.|+ .+.+|+||||+|.+|+++||+|||||||||||++|+|.... .+.+|+|.++|+++.. .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hh
Confidence 589999999995 45799999999999999999999999999999999986311 2567999998876521 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC---CCChHHHHHHHHHhCCCChhhhhcccC----CC
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG---ADSAEPRARRILAGLGFSRAMQDRATK----NF 293 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~L~~lgl~~~~~~~~~~----~L 293 (548)
. +..+++.+. ....+..++.+++.... .+..-. ......++.++++.+|+.+ ..++.++ .|
T Consensus 835 ~-------~~i~yv~Q~---~~~~~~~Tv~E~L~~~a-~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~L 902 (1394)
T TIGR00956 835 Q-------RSIGYVQQQ---DLHLPTSTVRESLRFSA-YLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGL 902 (1394)
T ss_pred h-------cceeeeccc---ccCCCCCCHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCC
Confidence 1 111222221 11233456666654211 121100 1122356789999999974 5677776 79
Q ss_pred CHHHHHHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH-HHhhcCEEEEEeCC-EE
Q psy11936 294 SGGWRMRVSLARALYIEPT-LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF-LDNVCNEIIHLDQQ-KL 367 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~-lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~-l~~vadrIi~L~~G-~i 367 (548)
||||||||+||++|+.+|+ ||||||||+|||..+...+.++|+++ +.|||++||++.. +...||++++|++| ++
T Consensus 903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 9999999999999999997 99999999999999999999998765 5799999999986 34679999999997 98
Q ss_pred EEEc
Q psy11936 368 YYYK 371 (548)
Q Consensus 368 ~~~~ 371 (548)
++++
T Consensus 983 v~~G 986 (1394)
T TIGR00956 983 VYFG 986 (1394)
T ss_pred EEEC
Confidence 8654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=287.83 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=153.2
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP---PNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~---~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
+++.+|+|+|++|++|++++|+|||||||||||++|+|.. .+ .+|+|.+++..+.. ..+. +...+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~--~~~~~~~G~i~~~g~~~~~---~~~~-------~~i~y 103 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS--PKGVKGSGSVLLNGMPIDA---KEMR-------AISAY 103 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCcceeEEEECCEECCH---HHHh-------hhcee
Confidence 3567999999999999999999999999999999999863 23 36889998876531 1111 11122
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccC------CCCHHHHHHHHHH
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATK------NFSGGWRMRVSLA 304 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~------~LSGGqkqRvaLA 304 (548)
..+. .......++.+++... ..+..- .......++.++++.+|+.+ ..+..++ .|||||||||+||
T Consensus 104 v~Q~---~~~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia 178 (617)
T TIGR00955 104 VQQD---DLFIPTLTVREHLMFQ-AHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFA 178 (617)
T ss_pred eccc---cccCccCcHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHH
Confidence 2221 1122345666665321 111110 11123456889999999974 4567665 5999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCEEEEEcCCHHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQKLYYYKGNYSMFKK 379 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~i~~~~g~y~~f~~ 379 (548)
++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+++|++. .+..+||+|++|++|++++ .|+.++...
T Consensus 179 ~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~-~G~~~~~~~ 256 (617)
T TIGR00955 179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY-LGSPDQAVP 256 (617)
T ss_pred HHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE-ECCHHHHHH
Confidence 9999999999999999999999999999888775 579999999985 6778999999999999985 577766543
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=234.92 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=155.1
Q ss_pred cEEEEeEEEEe-----CC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC-ch
Q psy11936 146 DIKVENFSISA-----KG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD-DL 217 (548)
Q Consensus 146 ~I~l~nls~~y-----~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~-~~ 217 (548)
.|.++||+++| +| -++|+++||+++.||+++|-||||+|||||||+|.|. +.|++|.|.+..+.-..+ -.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN--Y~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN--YLPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc--cCCCCceEEEEeCcchhhhhc
Confidence 47889999988 23 2589999999999999999999999999999999985 567888887654322111 00
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh--cCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA--IGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
..-..++....+-.++..+.... .+.....+.. .+-+-. .....+..++..+|.++++++.++.-.|.++||
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRv---iPRV~aLdVv---aePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSG 155 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRV---IPRVSALDVV---AEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSG 155 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHh---ccCcchHHHH---HhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCC
Confidence 00111221111223333332211 1222222222 222222 233456778899999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+|||.|||.++.+-+||||||||++||...+..+.++|.+- +.++|=|-||.+.=+.+|||++.|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999988888654 56899999999999999999998853
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=261.07 Aligned_cols=201 Identities=25% Similarity=0.382 Sum_probs=160.5
Q ss_pred cccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe--------EEEEeceeecc
Q psy11936 144 AVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI--------DILYCEQEVVA 214 (548)
Q Consensus 144 ~~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g--------~I~~~~q~i~~ 214 (548)
...|-+.+|+|.| +.+++|.+++|-|.--.+||||||||.||||||++|.|.+ .|..| .|++++|....
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl--~P~~GE~RKnhrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL--DPNDGELRKNHRLRIGWFDQHANE 661 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC--CCCcchhhccceeeeechhhhhHH
Confidence 3568899999999 5578999999999999999999999999999999999853 45444 34443332100
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCC
Q psy11936 215 DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFS 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 294 (548)
.+....+..+++.. . ..-....++..|..|||..+...-.+..||
T Consensus 662 ---------------------------~L~~Eetp~EyLqr----~----FNlpyq~ARK~LG~fGL~sHAHTikikdLS 706 (807)
T KOG0066|consen 662 ---------------------------ALNGEETPVEYLQR----K----FNLPYQEARKQLGTFGLASHAHTIKIKDLS 706 (807)
T ss_pred ---------------------------hhccccCHHHHHHH----h----cCCChHHHHHHhhhhhhhhccceEeeeecC
Confidence 00001111111111 1 112345678899999998665566788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+.||+||-.-+..|||||||||||+||++++..|.+.|..|++.|||||||-.++.+....+||+++..|-...|.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDF 786 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999998887789999999999999999
Q ss_pred HHHHHHH
Q psy11936 375 SMFKKMY 381 (548)
Q Consensus 375 ~~f~~~~ 381 (548)
++|....
T Consensus 787 eDYkkEV 793 (807)
T KOG0066|consen 787 EDYKKEV 793 (807)
T ss_pred HHHHHHH
Confidence 9997543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=305.98 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=155.4
Q ss_pred cEEEEeEEEEeC-------------CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAK-------------GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~-------------~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.+..+||++... .+.+|+|||++|.+|++++|+|||||||||||++|+|....-+.+|.|.+++.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 588999998863 3479999999999999999999999999999999999631113468888877653
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC----CChHHHHHHHHHhCCCChhhhhc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA----DSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~----~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
.. ..... ..+++.+. .......++.+++.... .+. ... .....++.++++.+|+.+ ..+.
T Consensus 947 ~~---~~~~~-------~igyv~Q~---d~~~~~lTV~E~L~~~a-~lr-~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~ 1010 (1470)
T PLN03140 947 KQ---ETFAR-------ISGYCEQN---DIHSPQVTVRESLIYSA-FLR-LPKEVSKEEKMMFVDEVMELVELDN-LKDA 1010 (1470)
T ss_pred Ch---HHhhh-------heEEEccc---cccCCCCcHHHHHHHHH-HhC-CCCCCCHHHHHHHHHHHHHHCCChh-HhCC
Confidence 21 00100 11122221 11223456666653211 111 111 112345789999999974 4566
Q ss_pred cc-----CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEE
Q psy11936 289 AT-----KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEI 359 (548)
Q Consensus 289 ~~-----~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrI 359 (548)
.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.++|+++ +.|||++||+.+ .+..+||++
T Consensus 1011 ~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~v 1090 (1470)
T PLN03140 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1090 (1470)
T ss_pred ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEE
Confidence 65 589999999999999999999999999999999999999999988775 679999999998 466789999
Q ss_pred EEEeC-CEEEEEcCC
Q psy11936 360 IHLDQ-QKLYYYKGN 373 (548)
Q Consensus 360 i~L~~-G~i~~~~g~ 373 (548)
++|++ |+++++ |+
T Consensus 1091 llL~~gG~~v~~-G~ 1104 (1470)
T PLN03140 1091 LLMKRGGQVIYS-GP 1104 (1470)
T ss_pred EEEcCCCEEEEE-CC
Confidence 99996 888755 44
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=268.10 Aligned_cols=205 Identities=23% Similarity=0.398 Sum_probs=153.5
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|.+++|++.-.+ +++++++||++.+|+.+|||||||||||||.|+|.|. ..|.+|.|.+++-++...+...+-.
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~--w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI--WPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc--cccCCCcEEecchhhhcCCHHHhcc
Confidence 36999999987643 5799999999999999999999999999999999984 5688899998887776555443332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHH---------HHHHHHhC--CCChhhhhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPR---------ARRILAGL--GFSRAMQDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~~~L~~l--gl~~~~~~~~~~ 291 (548)
. .+|++|.- ..|..++.+|+. .++.+...+. +.++.-.| |++. ....-..
T Consensus 411 h-------iGYLPQdV----eLF~GTIaeNIa-------Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT-~iG~~G~ 471 (580)
T COG4618 411 H-------IGYLPQDV----ELFDGTIAENIA-------RFGEEADPEKVIEAARLAGVHELILRLPQGYDT-RIGEGGA 471 (580)
T ss_pred c-------cCcCcccc----eecCCcHHHHHH-------hccccCCHHHHHHHHHHcChHHHHHhCcCCccC-ccCCCCC
Confidence 2 33333322 124445544442 2222211221 23333333 4432 2233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.||||||||++|||||..+|.+++||||-++||.+....|.+.|.. .++|+|+|||....+. .||+|++|++|++.
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~ 550 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA 550 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH
Confidence 8999999999999999999999999999999999999998888765 4689999999999885 59999999999999
Q ss_pred EEc
Q psy11936 369 YYK 371 (548)
Q Consensus 369 ~~~ 371 (548)
.|+
T Consensus 551 ~FG 553 (580)
T COG4618 551 AFG 553 (580)
T ss_pred hcC
Confidence 884
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=303.91 Aligned_cols=191 Identities=24% Similarity=0.333 Sum_probs=139.7
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-------EEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-------DILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-------~I~~~~q~i~~~ 215 (548)
.|+++|++|+|++ .++|+|+||+|++|++++|+||+|||||||+++|+|.. .|.+| .|.|.+|+....
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~--~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL--SHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--cccCCCEEEecCcEEEEcCccccc
Confidence 5999999999964 57999999999999999999999999999999999853 34333 466666655333
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------h
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------M 285 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~ 285 (548)
+.+ ..+|+. ++....+++..++++..++.++ .
T Consensus 692 ~gT------------------------------IreNI~--------fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~ 733 (1495)
T PLN03232 692 NAT------------------------------VRENIL--------FGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733 (1495)
T ss_pred ccc------------------------------HHHHhh--------cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCce
Confidence 222 111111 0001112233333333333211 1
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhh--cCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQG--WKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~--~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
......+|||||||||+|||||+++|+|||||||||+||..+...+.+ .+.. .++|+|+|||++.++. .||+|++|
T Consensus 734 IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L 812 (1495)
T PLN03232 734 IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILV 812 (1495)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEE
Confidence 223355799999999999999999999999999999999998876654 4544 2579999999999885 59999999
Q ss_pred eCCEEEEEcCCHHHHH
Q psy11936 363 DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f~ 378 (548)
++|+++.. |+|++..
T Consensus 813 ~~G~i~~~-Gt~~eL~ 827 (1495)
T PLN03232 813 SEGMIKEE-GTFAELS 827 (1495)
T ss_pred eCCEEEEe-cCHHHHH
Confidence 99999864 7776653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-30 Score=232.75 Aligned_cols=201 Identities=25% Similarity=0.309 Sum_probs=148.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL-KVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~-~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
++.++||+.+.++..+|-++||+|.+||++.|+|||||||||||..+.|..- ...-+|++.++++.+......
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~------ 75 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA------ 75 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh------
Confidence 5789999999999999999999999999999999999999999999998532 234468888888876432211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.+..+++++...+ +...++.+++... --..+.....+..+...|++.|++. ..++.|.+||||||-||+|-
T Consensus 76 ---qRq~GiLFQD~lL---FphlsVg~Nl~fA--lp~~~KG~aRr~~a~aAL~~~gL~g-~f~~dP~tlSGGQrARvaL~ 146 (213)
T COG4136 76 ---QRQIGILFQDALL---FPHLSVGQNLLFA--LPATLKGNARRNAANAALERSGLDG-AFHQDPATLSGGQRARVALL 146 (213)
T ss_pred ---hhheeeeeccccc---ccccccccceEEe--cCcccccHHHHhhHHHHHHHhccch-hhhcChhhcCcchHHHHHHH
Confidence 1122222222111 1122222222100 0011122233455778899999985 57889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHH----HHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLN----AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~----s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|+|+..|++||||||+|.||.. .++|+..-++..+..+|+||||...+. ...||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999999999999985 567888888888899999999999886 56777776
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=303.64 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=139.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCch
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~ 217 (548)
.|+++|++++|++ .++|+|+||+|++|++++|+|||||||||||++|+|. ..|.+|.|. |..|+....+.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CccCCcEEEECCEEEEEcCCccccCC
Confidence 5999999999974 5799999999999999999999999999999999985 345666654 44443322111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSG 295 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSG 295 (548)
+..+.+.. .. .++. +.+..+.... .....+..+ |.. ...+....+|||
T Consensus 714 Ti~eNI~~---------------g~-~~~~---~~~~~~~~~~----------~l~~~l~~~~~g~~-t~ig~~g~~LSG 763 (1522)
T TIGR00957 714 SLRENILF---------------GK-ALNE---KYYQQVLEAC----------ALLPDLEILPSGDR-TEIGEKGVNLSG 763 (1522)
T ss_pred cHHHHhhc---------------CC-ccCH---HHHHHHHHHh----------CCHHHHHhcCCCCC-ceecCCCCCCCH
Confidence 11110000 00 0000 0000000000 000112222 221 123556789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG-----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~-----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||+|||||+.+|++|||||||++||+.+..++.+.+.. .+.|+|+|||++.++.. ||+|++|++|+++..
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEee
Confidence 999999999999999999999999999999999999888753 24799999999999976 999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|++++.
T Consensus 843 -g~~~~l 848 (1522)
T TIGR00957 843 -GSYQEL 848 (1522)
T ss_pred -CCHHHH
Confidence 666554
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=303.07 Aligned_cols=191 Identities=24% Similarity=0.332 Sum_probs=140.1
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC-e------EEEEeceeeccC
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN-I------DILYCEQEVVAD 215 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~-g------~I~~~~q~i~~~ 215 (548)
.|+++|++|+|+. .++|+|+||+|++|++++||||+|||||||+++|+|.. .|.+ | .|.|.+|+....
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~--~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL--PPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh--ccCCCceEEEcCeEEEEcCccccC
Confidence 5999999999964 57999999999999999999999999999999999853 3444 4 455666654332
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------h
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------M 285 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~ 285 (548)
+.+ ..+|+. ++....+++..++++..++..+ .
T Consensus 692 ngT------------------------------IreNI~--------fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~ 733 (1622)
T PLN03130 692 NAT------------------------------VRDNIL--------FGSPFDPERYERAIDVTALQHDLDLLPGGDLTE 733 (1622)
T ss_pred CCC------------------------------HHHHHh--------CCCcccHHHHHHHHHHhCcHHHHHhCCCccccc
Confidence 222 222211 0011112233333333333221 2
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD-NYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~-~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
......+|||||||||+|||||+.+|+|||||||||+||..+...+. +.+... ++|+|+|||++.++. .||+|++|
T Consensus 734 IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L 812 (1622)
T PLN03130 734 IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILV 812 (1622)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEE
Confidence 23345679999999999999999999999999999999999877664 455542 579999999999886 59999999
Q ss_pred eCCEEEEEcCCHHHHH
Q psy11936 363 DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 363 ~~G~i~~~~g~y~~f~ 378 (548)
++|++.. .|+|++..
T Consensus 813 ~~G~i~e-~Gt~~eL~ 827 (1622)
T PLN03130 813 HEGMIKE-EGTYEELS 827 (1622)
T ss_pred eCCEEEE-eCCHHHHH
Confidence 9999986 47777653
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=263.93 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=152.8
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.-|+++||+|.|+ ++++|+||||++.+|..++||||||+||||+||+|.. +....+|.|.+++|++..-....++..
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR--ffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR--FFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH--HhhccCceEEEcCchHHHHHHHHHHHh
Confidence 3699999999995 6899999999999999999999999999999999986 356778999999998854333333322
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC--h--HHHHHHHHH-hCCCChh---hhhcccCCCCH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS--A--EPRARRILA-GLGFSRA---MQDRATKNFSG 295 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~--~~~~~~~L~-~lgl~~~---~~~~~~~~LSG 295 (548)
+ +++++...+ |+.+...++. +...+... . ..++..+-+ -++|++. ....+.-.|||
T Consensus 614 I-------GVVPQDtvL----FNdTI~yNIr-----yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 614 I-------GVVPQDTVL----FNDTILYNIR-----YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred c-------CcccCccee----ecceeeehee-----ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 2 222222211 1111111110 00000000 0 011111111 2355432 22334456999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||||||||+++..|.++||||.||+||..+...+...|.+. +.|-|+|.|.++.+-+ ||.|+++++|.|++ .|+
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvE-rG~ 755 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVE-RGR 755 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEee-cCc
Confidence 9999999999999999999999999999999999999988876 5799999999999875 99999999999997 577
Q ss_pred HHHHH
Q psy11936 374 YSMFK 378 (548)
Q Consensus 374 y~~f~ 378 (548)
.++..
T Consensus 756 HeeLl 760 (790)
T KOG0056|consen 756 HEELL 760 (790)
T ss_pred HHHHH
Confidence 66543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=294.21 Aligned_cols=187 Identities=24% Similarity=0.365 Sum_probs=128.1
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCchhHHHHHHHhhHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDLTAVESVLKADVKRTE 232 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~~~~~~~~~~~~~~~~ 232 (548)
+++|+|+||+|++|++++|+|||||||||||++|+|. ..|.+|.|. |..|+....+.+..+.+...
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~--~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g------ 510 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE--LEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG------ 510 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEEEEEeCCCccCCccHHHHHHhc------
Confidence 4689999999999999999999999999999999985 345666554 44444322221111111000
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 233 LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
. .+.. +.+..+... ..+...+..+... .........+|||||||||+|||||+.+|
T Consensus 511 ---------~-~~~~---~~~~~~~~~----------~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~ 567 (1490)
T TIGR01271 511 ---------L-SYDE---YRYTSVIKA----------CQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA 567 (1490)
T ss_pred ---------c-ccch---HHHHHHHHH----------HhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCC
Confidence 0 0000 000000000 0112223333211 11234567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-Hhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNY-LQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~-L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
++|||||||++||+.+...+.+. +..+ +.|+|+|||++.++.. ||+|++|++|+++.. |++++..
T Consensus 568 ~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~-g~~~~l~ 635 (1490)
T TIGR01271 568 DLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFY-GTFSELQ 635 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEE-cCHHHHH
Confidence 99999999999999999988874 4443 5799999999999875 999999999999864 6766653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=291.23 Aligned_cols=193 Identities=23% Similarity=0.327 Sum_probs=136.1
Q ss_pred EEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEE------EEeceeeccCchhHHHHHHH
Q psy11936 152 FSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI------LYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 152 ls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I------~~~~q~i~~~~~~~~~~~~~ 225 (548)
-.+.++++.+|+|+||+|.+|++++|+|||||||||||++|+|. ..|.+|.| +|..|+....+.+..+.+..
T Consensus 666 ~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~--~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~ 743 (1560)
T PTZ00243 666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ--FEISEGRVWAERSIAYVPQQAWIMNATVRGNILF 743 (1560)
T ss_pred cccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHc
Confidence 44566778899999999999999999999999999999999985 34556654 45555432222221111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
......+.+..... ...+...++.+ |+.. ..+..+.+|||||||||+|
T Consensus 744 -------------------~~~~~~~~~~~~~~----------~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaL 793 (1560)
T PTZ00243 744 -------------------FDEEDAARLADAVR----------VSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSL 793 (1560)
T ss_pred -------------------CChhhHHHHHHHHH----------HhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHH
Confidence 00000000000000 01123345555 5543 4567789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh-hc-CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNY-LQ-GW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~-L~-~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||||+.+|+||||||||++||+.+..++.+. +. .. +.|+|+||||++++. .||+|++|++|++.. .|+|+++.
T Consensus 794 ARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~-~G~~~~l~ 869 (1560)
T PTZ00243 794 ARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEF-SGSSADFM 869 (1560)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999999999999987777653 22 22 579999999999995 699999999999975 58887764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=250.72 Aligned_cols=218 Identities=21% Similarity=0.295 Sum_probs=153.5
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+.+.+|+|.|+ .+++|+++||++..|+.++|||++|+||||++++|-. +..+.+|.|.+++|++.......++..+
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR--FyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR--FYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH--HhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 488999999995 5789999999999999999999999999999999986 4688999999999988654444444443
Q ss_pred HhhHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC--CCChhhhhcccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADF--SSEQQEQLKEIYEELKAIGADSAEPRARRILAGL--GFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSGGqkqR 300 (548)
+...+...++........... ..+..+ +..... ...+......+ |+.. ......-.||||||||
T Consensus 340 g~VPQDtvLFNDti~yni~ygr~~at~ee----v~aaa~-------~aqi~~fi~~lP~gy~t-~VgerglklSggekqr 407 (497)
T COG5265 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEE----VGAAAE-------AAQIHDFIQSLPEGYDT-GVGERGLKLSGGEKQR 407 (497)
T ss_pred CcCcccceehhhhHHHHHhccCccccHHH----HHHHHH-------HhhhhHHHHhCchhhhc-ccchheeeccCchHHH
Confidence 333332222221111110000 000000 000000 00111222222 2221 1222334599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
|+|||+++.+|+||+|||.||+||..+...+...|+.. +.|-|+|.|.+..+.. ||.|++|++|+|++ .|+..+..
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~ll 485 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEELL 485 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHHH
Confidence 99999999999999999999999999999999988765 5799999999999976 99999999999997 57766654
Q ss_pred H
Q psy11936 379 K 379 (548)
Q Consensus 379 ~ 379 (548)
.
T Consensus 486 ~ 486 (497)
T COG5265 486 A 486 (497)
T ss_pred H
Confidence 3
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=294.48 Aligned_cols=205 Identities=22% Similarity=0.158 Sum_probs=147.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
.+.+|+|+|+.|.+|++++|+||||||||||||+|+|... ..|.+|+|.++|.++.... .. ......+..
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-----~~---~r~~i~yv~ 144 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-----KH---YRGDVVYNA 144 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-----hh---cCceeEEec
Confidence 3579999999999999999999999999999999999631 2467899999887542100 00 000011222
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhc-----CCCCh--HHH-HHHHHHhCCCChhhhhc-----ccCCCCHHHHHHHH
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAI-----GADSA--EPR-ARRILAGLGFSRAMQDR-----ATKNFSGGWRMRVS 302 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~--~~~-~~~~L~~lgl~~~~~~~-----~~~~LSGGqkqRva 302 (548)
+. .......++.+++.... .+..- +.... ..+ ++.+|+.+||.+ ..+. .+..|||||||||+
T Consensus 145 Q~---d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerkRvs 219 (1394)
T TIGR00956 145 ET---DVHFPHLTVGETLDFAA-RCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSGGERKRVS 219 (1394)
T ss_pred cc---cccCCCCCHHHHHHHHH-HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCcccchHHH
Confidence 11 11223456666554211 11110 00111 122 356899999974 3444 45679999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCH-HHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQ-SFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~-~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+..+||+|++|++|+++++ |+.++
T Consensus 220 IA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~-G~~~~ 297 (1394)
T TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF-GPADK 297 (1394)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE-CCHHH
Confidence 999999999999999999999999999999988764 56999999996 788889999999999999865 55544
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=238.99 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=134.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH--------cCCCCCCC----------CeEEEEeceeeccCch----
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA--------SRDLKVPP----------NIDILYCEQEVVADDL---- 217 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa--------G~~~~~~~----------~g~I~~~~q~i~~~~~---- 217 (548)
.-|+|||++|+.|..++|+|+||||||||++.+. +.....|. -..+.+.+|.....+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4689999999999999999999999999999662 10000111 1234555554433221
Q ss_pred hHHHHHHHhhHHH-------HHHHHHHHHHhh------hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh
Q psy11936 218 TAVESVLKADVKR-------TELLAECAKLEA------ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA 284 (548)
Q Consensus 218 ~~~~~~~~~~~~~-------~~l~~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 284 (548)
.++..++...... ..+..+...... ....+++.+.+.. +... ....++.++|+.+||...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~----~~~~---~~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEF----FENI---PKIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHH----HHhh---hhHHHHHHHHHHcCCchh
Confidence 1111111100000 000000000000 0012233332211 1111 113467789999999754
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCE
Q psy11936 285 MQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL~~~---P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadr 358 (548)
..++++.+|||||+||++||++|+.+ |+++||||||++||+..+.++.++|.++ +.|||+||||++++. .||+
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ 240 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADW 240 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 56899999999999999999999996 7999999999999999999999988764 679999999999996 6999
Q ss_pred EEEE------eCCEEEEE
Q psy11936 359 IIHL------DQQKLYYY 370 (548)
Q Consensus 359 Ii~L------~~G~i~~~ 370 (548)
|++| ++|++++.
T Consensus 241 ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 241 IIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred EEEecCCcCCCCCEEEEe
Confidence 9999 78999865
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=278.13 Aligned_cols=218 Identities=23% Similarity=0.371 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCce-eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-hHHHH
Q psy11936 145 VDIKVENFSISAKGND-LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-TAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~-iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-~~~~~ 222 (548)
..+.++|+++.|+.+. +++++||.|++||+.|+.|+|||||||++++|+|. ..|++|++...+.++..... .....
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~--~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE--TKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCC--ccCCcceEEEecCccccccchhhhhh
Confidence 3578999999998877 99999999999999999999999999999999985 47788888886665543211 11122
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+ ++.+|. .......+..+.+ .++.++.++...+....+..+|+.+||.+ ..+++++.+|||+|+|++
T Consensus 641 ~i-------GyCPQ~---d~l~~~lT~rEhL-~~~arlrG~~~~di~~~v~~ll~~~~L~~-~~~~~~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 641 QL-------GYCPQF---DALWEELTGREHL-EFYARLRGLPRSDIGSAIEKLLRLVGLGP-YANKQVRTYSGGNKRRLS 708 (885)
T ss_pred hc-------ccCCch---hhhhhhccHHHHH-HHHHHHcCCChhHHHHHHHHHHHHcCChh-hhccchhhCCCcchhhHH
Confidence 22 222222 2222334444443 45666776666677788999999999985 578999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---CeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~---~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|.||+.+|++++|||||+|+||.+++.+++++.+.. ++||++||.+++++.+|||+.+|.+|++... |+-...
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci-Gs~q~L 785 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI-GSPQEL 785 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe-cChHHH
Confidence 9999999999999999999999999999999998763 3999999999999999999999999999987 554443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=287.99 Aligned_cols=206 Identities=21% Similarity=0.229 Sum_probs=146.7
Q ss_pred EEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 153 SISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 153 s~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++.+ .+.+|+|+|+.|++|++++|+|||||||||||++|+|.. .|. +|+|.|++.++..... . +
T Consensus 173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l--~~~~~~~G~I~~nG~~~~~~~~---~-------~ 239 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGEITYNGYRLNEFVP---R-------K 239 (1470)
T ss_pred CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCcceeEEEECCEechhhcc---c-------c
Confidence 4444 467999999999999999999999999999999999863 344 7999998876532110 0 0
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC----------------------------------CChHHHHHHH
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA----------------------------------DSAEPRARRI 275 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~----------------------------------~~~~~~~~~~ 275 (548)
...++.+. .......++.+++.... .+...+. .+....+..+
T Consensus 240 ~i~yv~Q~---d~~~~~lTV~EtL~f~a-~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (1470)
T PLN03140 240 TSAYISQN---DVHVGVMTVKETLDFSA-RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315 (1470)
T ss_pred eeEEeccc---ccCCCcCcHHHHHHHHH-HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHH
Confidence 01111111 11112334444432211 1110000 0011235678
Q ss_pred HHhCCCChh----hhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEec
Q psy11936 276 LAGLGFSRA----MQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSH 347 (548)
Q Consensus 276 L~~lgl~~~----~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSH 347 (548)
|+.+||... ..+..+..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||+++|
T Consensus 316 L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~H 395 (1470)
T PLN03140 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395 (1470)
T ss_pred HHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999999742 235667899999999999999999999999999999999999999999988765 579999999
Q ss_pred CH-HHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 348 DQ-SFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 348 D~-~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+. ..+..+||+|++|++|+++++ |+.++
T Consensus 396 qp~~~i~~lfD~vilL~~G~ivy~-G~~~~ 424 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSEGQIVYQ-GPRDH 424 (1470)
T ss_pred CCCHHHHHHhheEEEeeCceEEEe-CCHHH
Confidence 85 578889999999999999865 55443
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=227.07 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEE-CCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIA-NGRRYGLVGPNGHGKTTLLRHIASRDLKVP-PNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~-~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++|+. +|.+. .+++|+.. +|++++|+|||||||||||++|++.....+ ..+... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~------------~~~~~ 68 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE------------NLRSV 68 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch------------hHHHH
Confidence 48889998 77554 55667644 489999999999999999999985321111 111100 00000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHH-HHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARR-ILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
+..... ...+. ..+... .. .+...+..+ .......+. ++...++. ...++++.+|||||+||++
T Consensus 69 ~~~~~~-------~~~v~-~~f~~~--~~---~~~~~r~~g-l~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~ 133 (213)
T cd03279 69 FAPGED-------TAEVS-FTFQLG--GK---KYRVERSRG-LDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLAS 133 (213)
T ss_pred hcCCCc-------cEEEE-EEEEEC--Ce---EEEEEEecC-CCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHH
Confidence 000000 00000 000000 00 000000000 011111111 23333444 4568889999999999999
Q ss_pred HHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 303 LARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 303 LAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||+. +|++|||||||++||+.+..++.++|..+ +.|||+||||++++..+||+++++++|.+
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 9999985 67899999999999999999999888765 56999999999999999999999998864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=271.31 Aligned_cols=212 Identities=20% Similarity=0.295 Sum_probs=161.7
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++|++.+|.. ..+|+||||+|.+||+|||||+.|||||||+.+|-.. ..|.+|.|.+++.++...+...++.
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl--~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL--VEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh--cCccCCeEEEcCeecccccHHHHHh
Confidence 46999999999954 4799999999999999999999999999999999863 4678899999999987766555443
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 292 (548)
. ..+++|.+ ..|..++..|++-. + ...++.+-++|+..++.+. .......+
T Consensus 1215 r-------lsIIPQdP----vLFsGTvR~NLDPf-------~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1215 R-------LSIIPQDP----VLFSGTVRFNLDPF-------D-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred c-------CeeeCCCC----ceecCccccccCcc-------c-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 2 23333322 22333333332110 0 1122334444444433221 12233467
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||-||||-++|||||+.+++||+|||+|++.|+++-..+.+.|++. ++|||.|.|++..+.. ||||+||++|++++|
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 9999999999999999999999999999999999999999999863 5899999999999987 999999999999999
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
+.++.-+.
T Consensus 1355 dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1355 DSPAELLS 1362 (1381)
T ss_pred CChHHHHh
Confidence 88877653
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=221.77 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=112.8
Q ss_pred EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-------CCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-------PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 163 ~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-------~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
++++|++.+| +++|+|||||||||||++|+|..-+. +..+.+.+.++...... ......++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~vf 82 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA----------NFAEVTLTF 82 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC----------ceEEEEEEE
Confidence 6789999999 99999999999999999999752111 00112322222211000 000000000
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc----cCC
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY----IEP 311 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~----~~P 311 (548)
+ +.... ++. ....++.++++. . ...++++.+||||||||++||++|+ .+|
T Consensus 83 q---------~~~~~------------~~~-~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~ 136 (197)
T cd03278 83 D---------NSDGR------------YSI-ISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPS 136 (197)
T ss_pred E---------cCCCc------------eeE-EehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCC
Confidence 0 00000 000 013456667766 2 2457889999999999999999997 467
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
++|||||||++||+.+..++.++|.++ +.|||+||||++++ .+||+++.|..
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999999999999876 47999999999987 47999999863
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=234.16 Aligned_cols=312 Identities=21% Similarity=0.272 Sum_probs=183.0
Q ss_pred eEEEEeCCceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 151 NFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++..+||.. -|+=..| ...+|.++||+|+||.||||-+++|+|.. .|.=|+. .+...++.++.. ++
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel--~PNLG~~---------~~pp~wdeVi~~-Fr 145 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGEL--KPNLGRY---------EDPPSWDEVIKR-FR 145 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCcc--ccCCCCC---------CCCCCHHHHHHH-hh
Confidence 456778642 1222222 34589999999999999999999999964 3322210 111122222221 11
Q ss_pred HHHHHHHHHHHhhhcCCh-hHHHHHHH--------HHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 230 RTELLAECAKLEAADFSS-EQQEQLKE--------IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~-~~~~~l~~--------~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...+......+....... .-.+.+.. +.+-+... ...-...++.+.|+|.. .+++.+++|||||.||
T Consensus 146 GtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---de~g~~devve~l~L~n-vl~r~v~~LSGGELQr 221 (591)
T COG1245 146 GTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---DERGKFDEVVERLGLEN-VLDRDVSELSGGELQR 221 (591)
T ss_pred hhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhh---hhcCcHHHHHHHhcchh-hhhhhhhhcCchHHHH
Confidence 222211111111000000 00000000 01111111 11235678899999974 7899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+||.+|++++|++++|||||.||+..+....+.++++ +++||+|.||+..++-++|-|.++.. .- |-|-.+
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG-~p----g~YGvv 296 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG-EP----GVYGVV 296 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec-CC----ccceEe
Confidence 99999999999999999999999998877777776665 47999999999999999998877742 21 222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecC
Q psy11936 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFP 457 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~ 457 (548)
...+.-+ .-...| -.+ -.. .|.+ +-+...+.|...
T Consensus 297 s~p~svr--~gIN~y----------L~G-------------------------yl~-------~EN~-R~R~~~I~F~~~ 331 (591)
T COG1245 297 SKPKSVR--VGINEY----------LKG-------------------------YLP-------EENV-RFRPEEIEFEEK 331 (591)
T ss_pred ccchHHH--HHHHHH----------Hhc-------------------------cCc-------hhcc-cccccceeeecc
Confidence 1111100 000000 000 000 0000 001234555554
Q ss_pred CCCC-CC-CCcEEEEeeEEEeCCCCcccccCCccCCCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 458 DPPP-LQ-PPILGLHNVTFAYEGMKPLLMSKADEDQGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 458 ~~~~-~~-~~vL~l~~vs~~Y~~~~~ll~~v~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
++.. .+ ..+++-.++++.|++=+.-.+.=. ...|+.+-|.||| +|.+|+|.|.+.|+.|. ..+++++|=.
T Consensus 332 ~~~~~~~~~~lv~y~~~~k~~g~F~L~V~~G~-i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKP 407 (591)
T COG1245 332 PPRDDKARDTLVEYPDLKKTYGDFKLEVEEGE-IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKP 407 (591)
T ss_pred CcccccccceeeecchheeecCceEEEecCCe-eecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecc
Confidence 4332 23 667888888888864111111111 1267888888887 77999999999999999 8899999965
Q ss_pred cc
Q psy11936 532 MK 533 (548)
Q Consensus 532 ~~ 533 (548)
|.
T Consensus 408 Qy 409 (591)
T COG1245 408 QY 409 (591)
T ss_pred ee
Confidence 53
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=255.77 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=161.1
Q ss_pred ccEEEEeEEEEeCC-----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKG-----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~-----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~ 218 (548)
..+.++|++....+ +.+|+|||..+++|+++||+||+||||||||++|+|.... ...+|.|.++|+......
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~-- 101 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS-- 101 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh--
Confidence 34778888887733 6799999999999999999999999999999999997432 346789999885432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccC----
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATK---- 291 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~---- 291 (548)
.... .+++.| ........++.|.+.. ...++.- ...+.+.++++++..+|+. ...+..++
T Consensus 102 -~~~~-------s~yV~Q---dD~l~~~LTV~EtL~f-~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~ 168 (613)
T KOG0061|consen 102 -FRKI-------SGYVQQ---DDVLLPTLTVRETLRF-SALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGI 168 (613)
T ss_pred -hhhe-------eEEEcc---cccccccccHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCC
Confidence 1111 111111 1122345566665532 2223221 2234567899999999998 56677776
Q ss_pred -CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHH-HHHhhcCEEEEEeCCE
Q psy11936 292 -NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQS-FLDNVCNEIIHLDQQK 366 (548)
Q Consensus 292 -~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~-~l~~vadrIi~L~~G~ 366 (548)
.+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+++ ++|||++=|.+. .+-.+.|++++|.+|+
T Consensus 169 rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 59999999999999999999999999999999999998888888765 689999999864 4667899999999999
Q ss_pred EEEEcCCHH
Q psy11936 367 LYYYKGNYS 375 (548)
Q Consensus 367 i~~~~g~y~ 375 (548)
+++. |.-.
T Consensus 249 ~vy~-G~~~ 256 (613)
T KOG0061|consen 249 VVYS-GSPR 256 (613)
T ss_pred EEEe-cCHH
Confidence 8865 5434
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=225.44 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++.+|||||+||++|||||+ .+|++|||||||++||+.+...+.+.|.++ +.+||++||+.+ +..+||+|
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i 230 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKF 230 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEE
Confidence 46788999999999999999996 368999999999999999999999999886 457777777765 56899999
Q ss_pred EEEe
Q psy11936 360 IHLD 363 (548)
Q Consensus 360 i~L~ 363 (548)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-26 Score=209.70 Aligned_cols=133 Identities=34% Similarity=0.505 Sum_probs=94.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+|+||+|.+|++++|+|+|||||||||++|+|. ..|.+|.|.+.+.++...........+. ++.+. .
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--~~~~~G~i~~~~~~~~~~~~~~~~~~i~-------~~~~~---~ 68 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--LPPDSGSILINGKDISDIDIEELRRRIG-------YVPQD---P 68 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--SHESEEEEEETTEEGTTSHHHHHHHTEE-------EEESS---H
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc--cccccccccccccccccccccccccccc-------ccccc---c
Confidence 7899999999999999999999999999999985 4568899999888775422111111000 00000 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhccc----CCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRAT----KNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~----~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
......++.++ ....++..++..+++.. ..+..+ ..|||||||||+||+||+.+|++||||
T Consensus 69 ~~~~~~tv~~~--------------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllD 133 (137)
T PF00005_consen 69 QLFPGLTVREN--------------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLD 133 (137)
T ss_dssp CHHTTSBHHHH--------------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred ccccccccccc--------------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00111122221 13456778888888753 334444 999999999999999999999999999
Q ss_pred CCCC
Q psy11936 318 EPTN 321 (548)
Q Consensus 318 EPTn 321 (548)
||||
T Consensus 134 EPt~ 137 (137)
T PF00005_consen 134 EPTN 137 (137)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-27 Score=229.45 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=118.9
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++|+. +|++..++++++| +++||+|||||||||||++|+.. +|..+. ...
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~-----~~~----- 57 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRAS-----KMR----- 57 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHH-----Hhh-----
Confidence 7788886 8999999999988 89999999999999999999721 010000 000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHH---HHH--HHHHHHhcCCCChHH----HHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQ---LKE--IYEELKAIGADSAEP----RARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~---l~~--~~~~l~~~~~~~~~~----~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
....+++.+.... ....+..+. +.. ....+...+...... ...++++.++++. ..++++..|||||
T Consensus 58 -~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~ 132 (212)
T cd03274 58 -QKKLSDLIHNSAG---HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGE 132 (212)
T ss_pred -hhhHHHHhcCCCC---CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHH
Confidence 0000111110000 000000000 000 000011111111011 1245566777764 4577889999999
Q ss_pred HHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 298 RMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 298 kqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+||++||+|++. +|++|||||||++||+.++.++.++|.++ +.|+|+|||+. ++.++||+|++|.
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~ 203 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEE
Confidence 999999999974 58999999999999999999999999887 36999999996 4567999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=260.27 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY---IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++ ++|..+|+.....++++.+|||||+|||+||++|+ .+|++|||||||++||+.++..|.++|..+ +.||
T Consensus 787 ~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TV 865 (1809)
T PRK00635 787 HEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865 (1809)
T ss_pred HHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3445 58899999743368999999999999999999997 699999999999999999999999988764 5799
Q ss_pred EEEecCHHHHHhhcCEEEEEe------CCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHLD------QQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L~------~G~i~~~~g~y~~f 377 (548)
|+||||++++ .+||+|++|. +|+++. .|+.+++
T Consensus 866 IiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~-~Gtpeel 904 (1809)
T PRK00635 866 VIIEHNMHVV-KVADYVLELGPEGGNLGGYLLA-SCSPEEL 904 (1809)
T ss_pred EEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEE-eCCHHHH
Confidence 9999999999 7999999996 678875 4666554
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=258.20 Aligned_cols=195 Identities=28% Similarity=0.442 Sum_probs=145.2
Q ss_pred ccEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC----CeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP----NIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~----~g~I~~~~q~i~~~~~ 217 (548)
..++++|.+++++. .+.|+||||+|++|+.+||||+-|||||+||.+|.|......+ +|.+.|.+|.....+.
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG 596 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC
Confidence 35899999999864 3489999999999999999999999999999999996432222 3556677765432222
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hh
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QD 287 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~ 287 (548)
+ +.+|+. +|....+++.+++++.+.|..++ ..
T Consensus 597 T------------------------------vreNIL--------FG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG 638 (1381)
T KOG0054|consen 597 T------------------------------VRENIL--------FGSPYDEERYDKVIKACALKKDLEILPFGDLTEIG 638 (1381)
T ss_pred c------------------------------HHHhhh--------cCccccHHHHHHHHHHccCHhHHhhcCCCCcceec
Confidence 1 222210 12222344444555555443221 23
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN-YLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~-~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
.+.-+|||||||||+||||+.+++||+|||-|.|++|...-.+|.+ .+..+ ++|+|+|||.+.++.. ||.|++|++
T Consensus 639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~ 717 (1381)
T KOG0054|consen 639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKD 717 (1381)
T ss_pred CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecC
Confidence 3456899999999999999999999999999999999987666554 45443 4799999999999975 999999999
Q ss_pred CEEEEEcCCHHHHHH
Q psy11936 365 QKLYYYKGNYSMFKK 379 (548)
Q Consensus 365 G~i~~~~g~y~~f~~ 379 (548)
|+|.. .|+|++..+
T Consensus 718 G~I~~-~Gty~el~~ 731 (1381)
T KOG0054|consen 718 GKIVE-SGTYEELLK 731 (1381)
T ss_pred CeEec-ccCHHHHHh
Confidence 99986 599998763
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-26 Score=212.67 Aligned_cols=202 Identities=25% Similarity=0.293 Sum_probs=151.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+++.++||+.+ +-|-.+|..+..|+++-+||||||||||||-.++|. .|.+|+|.+.|+++.......+.
T Consensus 2 ~l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm---~~~sGsi~~~G~~l~~~~~~eLA--- 71 (248)
T COG4138 2 ILMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGSGSIQFAGQPLEAWSATELA--- 71 (248)
T ss_pred ceeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCC---CCCCceEEECCcchhHHhHhHHH---
Confidence 35778888764 346678999999999999999999999999999996 78999999999877543333221
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+...|+.+. +...|.+.++.+ +...-. ......+..+...+++++ .+.+.+++|||||-|||-|
T Consensus 72 ----rhRAYLsQq---q~p~f~mpV~~Y-------L~L~qP~~~~a~~i~~i~~~L~l~D-KL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 72 ----RHRAYLSQQ---QTPPFAMPVWHY-------LTLHQPDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred ----HHHHHHhhc---cCCcchhhhhhh-------hhhcCchHHHHHHHHHHHhhhcccc-hhhhhhhhcCcccceeeEE
Confidence 222333322 122233333222 221111 122345667888999985 5689999999999999999
Q ss_pred HHHHcc-----C--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 304 ARALYI-----E--PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 304 AraL~~-----~--P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
|..+++ + ..+||||||.|+||+.....|..+|..+ +.+|||.+||++--.+-||++|.|..|++...+
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G 214 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeec
Confidence 998875 3 3599999999999998887777777655 679999999999988999999999999998753
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=232.47 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=161.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..++++|++.. ..++|+||++.+||++||.|-=|||+|-|+++|.|. ..+.+|+|.+.++.+...+.... +
T Consensus 262 ~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~sp~~A---i 332 (500)
T COG1129 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRSPRDA---I 332 (500)
T ss_pred cEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCCHHHH---H
Confidence 35777777643 268999999999999999999999999999999983 45668999999998866543211 1
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
. ....++++...........+..+|+... ...+. .+........+..+...|++.....+.++.+||||.||+
T Consensus 333 ~---~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 333 K---AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred H---cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 0 1122333332223333344444544322 11111 112222345577888999997666678999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|.|||.|+.+|+||||||||-|.|.-+...+.++|.++ +.+||+||-++.++..+||||++|++|+++.
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988875 6899999999999999999999999999986
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=223.40 Aligned_cols=181 Identities=28% Similarity=0.410 Sum_probs=132.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC-----eEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN-----IDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~-----g~I~~~~q~i~~~~~~~~ 220 (548)
.++..++++.||+.. |.--.=+|..||++|++||||.|||||.++|+|.. .|.. ..|.|-+|.+...-..++
T Consensus 342 lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i--kPdeg~~~~~~vSyKPQyI~~~~~gtV 418 (591)
T COG1245 342 LVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI--KPDEGSEEDLKVSYKPQYISPDYDGTV 418 (591)
T ss_pred eeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccc--cCCCCCCccceEeecceeecCCCCCcH
Confidence 355566667776432 22223466788999999999999999999999864 3443 468888887754422222
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
...+...... ......--.+++.-|.|. ...++++..|||||.||
T Consensus 419 ~~~l~~~~~~----------------------------------~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQR 463 (591)
T COG1245 419 EDLLRSAIRS----------------------------------AFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQR 463 (591)
T ss_pred HHHHHHhhhh----------------------------------hcccchhHHhhcCccchH-HHHhcccccCCchhHHH
Confidence 2221110000 000001123466777886 46799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|+||.||..++||+|||||+++||.+.+..+...|+++ ..|.++|.||+.+++-++||+++++.
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999999877766666554 68999999999999999999999963
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=218.38 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++|+.|.|... --+..||++|.+||++-|||.||||||||+++|+| +..|.+|+|.++|..+...+...++..+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG--L~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG--LYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc--ccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 59999999999765 45789999999999999999999999999999998 4689999999999988777666555544
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhc--ccCCCCHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDR--ATKNFSGGWRMR 300 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~--~~~~LSGGqkqR 300 (548)
...+...-++.+ +.+.......+.+..+|+++.+... ..+. .+-.||-|||+|
T Consensus 400 SavFsDyhLF~~-----------------------ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 400 SAVFSDYHLFDQ-----------------------LLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHhhhHhhhHh-----------------------hhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 433322222211 1111122344556666666655321 1222 245699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~----L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
+++.-||+.+-+||+|||=-+.-||.-++|+... |++.++||+.||||-.... .|||++.+.+|++++-.|
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 9999999999999999999999999999988764 4677999999999855543 589999999999998765
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=243.21 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLI 344 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIi 344 (548)
+..++|..+||....+++++.+|||||+|||+||++|+.+| +||||||||++||+..+..|.++|.++ +.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999743468899999999999999999999999 999999999999999999999888765 579999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
||||++++. .||+|++| ++|+|+. .|+.+++.
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~el~ 926 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-TGTPEEVA 926 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEEE-eCCHHHHH
Confidence 999999985 69999999 6899986 46666553
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=239.89 Aligned_cols=103 Identities=26% Similarity=0.387 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI---EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLI 344 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~---~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIi 344 (548)
+..++|..+||....+++++.+|||||+|||+||++|+. +|+||||||||++||+..+..|.++|.++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788999997544688999999999999999999997 59999999999999999999999888765 579999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYS 375 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~ 375 (548)
||||++++. .||+|++| ++|+++.. |+.+
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~-G~~~ 921 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVAS-GTPE 921 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEEEe-CCHH
Confidence 999999985 69999999 78999864 6544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=208.92 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCCh-------------------hhhhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCC
Q psy11936 268 AEPRARRILAGLGFSR-------------------AMQDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLD 324 (548)
Q Consensus 268 ~~~~~~~~L~~lgl~~-------------------~~~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD 324 (548)
...++.++|+.+||.. ...+.++.+|||||+||++||+||+ .+|++|||||||++||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 3467778888888851 3456789999999999999999997 5789999999999999
Q ss_pred HHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 325 LNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 325 ~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+..+.++.++|.++ +.|||+|||+.+.+. .||+|+-+.
T Consensus 203 ~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999999875 468999999977765 699998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=208.25 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=68.7
Q ss_pred hcccCCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYIE----PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~~----P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrI 359 (548)
+.++.+|||||+||++||++|+.+ |++|||||||++||+..+.++.++|.++ +.|||+||||.+++ .+||++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 445689999999999999999864 9999999999999999999999999876 46999999998877 579999
Q ss_pred EEEeC
Q psy11936 360 IHLDQ 364 (548)
Q Consensus 360 i~L~~ 364 (548)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=202.61 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=69.8
Q ss_pred hcccCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHhhc----CCeEEEEecCHHHHHhh
Q psy11936 287 DRATKNFSGGWRMR------VSLARALYIEPTLLLLDEPTNHLDLNAVI-WLDNYLQGW----KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqR------vaLAraL~~~P~lLLLDEPTn~LD~~s~~-~L~~~L~~~----~~TvIiVSHD~~~l~~v 355 (548)
++++.+||+||+|| ++|||||+.+|++|||||||++||+.++. ++.++|.++ +.|||+|||+++++. .
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-A 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-h
Confidence 67789999999996 78999999999999999999999999999 999988765 459999999999885 6
Q ss_pred cCEEEEEeC
Q psy11936 356 CNEIIHLDQ 364 (548)
Q Consensus 356 adrIi~L~~ 364 (548)
||+|++|++
T Consensus 189 ~d~i~~l~~ 197 (204)
T cd03240 189 ADHIYRVEK 197 (204)
T ss_pred CCEEEEEee
Confidence 999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-23 Score=224.38 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=132.8
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~ 217 (548)
..|+++||+..-+ +..+++++||+|.+|+.+.|.|+||||||||+|+|+|+= +..|..-.+.|.+|.......
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG 470 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc
Confidence 4699999999985 468899999999999999999999999999999999851 122322334555554432211
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh------cccC
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD------RATK 291 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~------~~~~ 291 (548)
.++..+.+ .+ ...+..++.+.++|..+||.+ +.+ +--.
T Consensus 471 -tLre~l~Y--------------P~--------------------~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~ 514 (604)
T COG4178 471 -TLREALCY--------------PN--------------------AAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDR 514 (604)
T ss_pred -cHHHHHhC--------------CC--------------------CCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhh
Confidence 11111000 00 000123445666777777752 211 2234
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG--WKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~--~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
.|||||||||++||+|+++|++++|||.|++||+.+...+.+.+++ .+.|||-|+|..... .+.++.+.+.+
T Consensus 515 vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~l~l~~ 588 (604)
T COG4178 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW-NFHSRQLELLD 588 (604)
T ss_pred hcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH-HHHhhheeecc
Confidence 6999999999999999999999999999999999999999999998 678999999987654 56777777653
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=196.79 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=77.7
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----C-
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-----K- 339 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-----~- 339 (548)
.++.++|.. . ...++++.+||||||||++||+|| +.+|++|||||||++||+..+..+.++|.+. +
T Consensus 91 ~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 455566665 2 345788999999999999999999 6999999999999999999999888888663 2
Q ss_pred CeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 340 KTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 340 ~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
.|||++||+++.+..+ |+|.+|..++
T Consensus 167 ~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 167 QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEEEECCcccccccc-cceeEEEecC
Confidence 4899999999999875 9999998654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=195.99 Aligned_cols=218 Identities=20% Similarity=0.251 Sum_probs=147.1
Q ss_pred cEEEEeEEEEeC----CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-----EEEEeceeeccCc
Q psy11936 146 DIKVENFSISAK----GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-----DILYCEQEVVADD 216 (548)
Q Consensus 146 ~I~l~nls~~y~----~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-----~I~~~~q~i~~~~ 216 (548)
.+.+.||+..+. --.+++++|++++.||+-||||.+|||||-..|+|+|.. ..+- +..+.+.++....
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~---kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVN---KDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccc---ccceEEEhhhcccccchhhcCC
Confidence 366788888773 235899999999999999999999999999999999842 2221 2223333332222
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHhCCCCh--hhhhcc
Q psy11936 217 LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA-----DSAEPRARRILAGLGFSR--AMQDRA 289 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~~~L~~lgl~~--~~~~~~ 289 (548)
....+.+++.. ..++++.... -..+...+..++-.-.-.+..-+. .....++-++|.++|+.+ +....+
T Consensus 80 Pr~RRk~ig~~---isMIFQeP~s-CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY 155 (330)
T COG4170 80 PRERRKLVGHN---VSMIFQEPQS-CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY 155 (330)
T ss_pred hHHhhhhhccc---hhhhhcCchh-hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC
Confidence 22222222111 1111111100 000011111111000000000011 113567889999999974 456788
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+.+|--||-|+|+||.|++.+|.+||.|||||++|+.+...+..+|..+ +.||+++|||+..+...||+|-+|.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999999999999999999999999999999999988765 469999999999999999999999888
Q ss_pred EEEEE
Q psy11936 366 KLYYY 370 (548)
Q Consensus 366 ~i~~~ 370 (548)
+-++.
T Consensus 236 Q~~ES 240 (330)
T COG4170 236 QTVES 240 (330)
T ss_pred ccccc
Confidence 87653
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=193.48 Aligned_cols=208 Identities=24% Similarity=0.260 Sum_probs=144.4
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH---H
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV---E 221 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~---~ 221 (548)
.|++.++.|.|.. .+++-|+|++++.|.+..|||.||||||||||+|+|.-+ ...+.|...+.+...+..-.- -
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccccccccCce
Confidence 4899999999954 589999999999999999999999999999999998532 222334433332211100000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+++............ .. ...+..+ ...+...+.... .|-+.++..+.++ ..-+.+.+|-|||+||
T Consensus 91 ~YLGgeW~~~~~~age--vp-lq~D~sa-------e~mifgV~g~dp-~Rre~LI~iLDId---l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGE--VP-LQGDISA-------EHMIFGVGGDDP-ERREKLIDILDID---LRWRMHKVSDGQRRRV 156 (291)
T ss_pred eEeccccccccccccc--cc-ccccccH-------HHHHhhccCCCh-hHhhhhhhheecc---ceEEEeeccccchhhh
Confidence 0000000000000000 00 0001111 111223334333 5556677777775 3456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
.||.-|+..=.+|||||-|-.||..++..|.++|+. .+.|||..||-.+=+...++++++|.+|+++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999975 36799999999999999999999999999986
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-22 Score=194.61 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=103.7
Q ss_pred eeEeeeEEEECCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCC--eEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 161 LFVNANLLIANGR-RYGLVGPNGHGKTTLLRHIA--------SRDLKVPPN--IDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 161 iL~~vsl~I~~Ge-~igLvGpNGsGKSTLLklLa--------G~~~~~~~~--g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
-+.++||+|.+|+ +++|+|||||||||||++|+ |. ..|.. ..+.|.+|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~--~vp~~~~~~~~~~~~~------------------ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL--PIPAAEGSSLPVFENI------------------ 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC--CccccccccCcCccEE------------------
Confidence 4568899999996 69999999999999999997 32 11211 111111111
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+..++.. .......++||+||+|++.|++++ .
T Consensus 76 ----------------------------------------------~~~lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~ 107 (200)
T cd03280 76 ----------------------------------------------FADIGDE-QSIEQSLSTFSSHMKNIARILQHA-D 107 (200)
T ss_pred ----------------------------------------------EEecCch-hhhhcCcchHHHHHHHHHHHHHhC-C
Confidence 1122222 234556789999999999999885 8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHH---hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLD-NYL---QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~-~~L---~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+|+++||||||++||+.....+. .++ .+.+.|+|++||+.+ +..+||+++.|++|++...
T Consensus 108 ~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 108 PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCCCeEEEEEEEe
Confidence 99999999999999998876653 233 344689999999954 5678999999999999753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=198.10 Aligned_cols=219 Identities=19% Similarity=0.276 Sum_probs=161.1
Q ss_pred cccEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee-ccCchhHHH
Q psy11936 144 AVDIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-VADDLTAVE 221 (548)
Q Consensus 144 ~~~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i-~~~~~~~~~ 221 (548)
...|+++||+..-.. .+.+++|||+|..||++||.|-.|-|-+.|+.+|+|. ..+.+|+|.+.+.++ ...+.....
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl--r~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL--RKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC--CccCCceEEECCEeccccCCHHHHH
Confidence 357999999987643 5789999999999999999999999999999999985 345669999999886 222222111
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HH---hcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LK---AIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
. ....++++...-.......+..+|+..-... +. .+........+.++++.|++...-...++.+|||
T Consensus 333 ~------~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG 406 (501)
T COG3845 333 R------LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406 (501)
T ss_pred h------cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence 0 0112222221111122233333433211000 00 1112234566788999998864445677899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|.+||+-+||=|..+|++||+..||-|||..+.+.+.+.|.+. +.+||+||-|++++..+||||.+|.+|+++..
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999998887654 67999999999999999999999999999753
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=197.12 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=132.8
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCC---eEEEEeceeec
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPN---IDILYCEQEVV 213 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~---g~I~~~~q~i~ 213 (548)
..|++++|+++-.. ..+.+|+||.|..|+-+.|.||||||||+|||+|+|+- +..|.. ..+.|.+|...
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY 511 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY 511 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC
Confidence 47999999998744 56778899999999999999999999999999999851 011112 23677777653
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC-CChhhhhcccCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG-FSRAMQDRATKN 292 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~ 292 (548)
....+..++++-.. ...+......+ .+.+....+. .....+++++| ++......-...
T Consensus 512 mt~GTLRdQvIYP~----------~~~~~~~~~~~-d~~i~r~Le~----------v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 512 MTLGTLRDQVIYPL----------KAEDMDSKSAS-DEDILRILEN----------VQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred ccccchhheeeccC----------ccccccccCCC-HHHHHHHHHH----------hhhhhHHHHhCCCCchhhccHHhh
Confidence 32222111111000 00000000000 0011111110 11223444443 321111223568
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+||+||+++||.+..+|.+-||||-||++|.+....+.+.+++.+.|.|-|+|...+. ++-|.++.|+.
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999998765 67899999975
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-20 Score=179.21 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred hhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----C-CeEEEEecCHHHHHhh
Q psy11936 285 MQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----K-KTLLIVSHDQSFLDNV 355 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~-~TvIiVSHD~~~l~~v 355 (548)
..+..+.+||||||||+.+|++| +.+|++|||||||++||+.+...+.+.|..+ + .|+|+||||+.....+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 34667889999999999877554 5899999999999999999999888888654 2 3799999998877777
Q ss_pred cC--EEEEEeCCE
Q psy11936 356 CN--EIIHLDQQK 366 (548)
Q Consensus 356 ad--rIi~L~~G~ 366 (548)
|| +|++|.+|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 76 778888875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-20 Score=215.29 Aligned_cols=211 Identities=21% Similarity=0.265 Sum_probs=146.6
Q ss_pred EEEEeEEEEe----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 147 IKVENFSISA----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 147 I~l~nls~~y----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
....|+.+.- +.+.+|+||+=-+.+|-.+||+|+|||||||||++|+|+...---+|+|.+.|..... ...
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF-- 862 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETF-- 862 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhh--
Confidence 4455555544 4467999999999999999999999999999999999863222224666666554321 111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhc---CCCChHHHHHHHHHhCCCChhhhhcccCC----CCH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI---GADSAEPRARRILAGLGFSRAMQDRATKN----FSG 295 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----LSG 295 (548)
.+..++..|. .......++.|.+.. ...|+.- +..+..+.++++++.++|.+ ..+.-++. ||.
T Consensus 863 -----~R~~GYvqQ~---DiH~~~~TVrESL~f-SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~ 932 (1391)
T KOG0065|consen 863 -----ARVSGYVEQQ---DIHSPELTVRESLRF-SAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLST 932 (1391)
T ss_pred -----ccccceeecc---cccCcccchHHHHHH-HHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCH
Confidence 1122232221 122234455555432 2233321 22223356889999999973 45555655 999
Q ss_pred HHHHHHHHHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH-HHhhcCEEEEEeCC-EEEE
Q psy11936 296 GWRMRVSLARALYIEP-TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF-LDNVCNEIIHLDQQ-KLYY 369 (548)
Q Consensus 296 GqkqRvaLAraL~~~P-~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~-l~~vadrIi~L~~G-~i~~ 369 (548)
+||+|+.||--|+.+| .||+|||||||||..+...+.++++++ |.|||.+=|...- +-+..|+++.|..| +.++
T Consensus 933 eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 933 EQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 9999999999999999 999999999999999988888888765 6899999998754 44558999999764 5554
Q ss_pred EcCC
Q psy11936 370 YKGN 373 (548)
Q Consensus 370 ~~g~ 373 (548)
+ |+
T Consensus 1013 ~-G~ 1015 (1391)
T KOG0065|consen 1013 F-GP 1015 (1391)
T ss_pred e-cC
Confidence 4 54
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=177.02 Aligned_cols=153 Identities=23% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAE 236 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~ 236 (548)
+...+.+|++|++..|++++|+||||+||||||++|+-. . ++.+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------~--------------------------~la~ 58 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------V--------------------------LMAQ 58 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------H--------------------------HHHH
Confidence 345689999999999999999999999999999999610 0 0000
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH--ccCCCEE
Q psy11936 237 CAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL--YIEPTLL 314 (548)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL--~~~P~lL 314 (548)
.. ...+.. ...-..+..++..+|+.+. ....+|+|+++++.+++++ +.+|+++
T Consensus 59 ~g---~~vpa~------------------~~~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLv 113 (222)
T cd03285 59 IG---CFVPCD------------------SADIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLI 113 (222)
T ss_pred hC---CCcCcc------------------cEEEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 00 000000 0000012335566676532 3678999999999999999 8999999
Q ss_pred EEeCC---CCCCCHHHHHHHH-HHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 315 LLDEP---TNHLDLNAVIWLD-NYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 315 LLDEP---Tn~LD~~s~~~L~-~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||| ||+||..++.|.. +.+.+ .+.++|++||+ ..+..+||++..+.+|++....
T Consensus 114 LLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 114 IIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred EEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEE
Confidence 99999 9999999887755 66654 46899999997 5567899999999999886543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=179.55 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 290 TKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
..+|||||+||++||++++. +|++|||||||++||+.....+.+.|..+ +.|+|+||||+..+ .+||+++.|.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~ 246 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVE 246 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEE
Confidence 34599999999999987654 99999999999999999999999998876 46999999999965 6899999998
Q ss_pred CCE
Q psy11936 364 QQK 366 (548)
Q Consensus 364 ~G~ 366 (548)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=189.98 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=129.3
Q ss_pred ccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCch
Q psy11936 145 VDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDL 217 (548)
Q Consensus 145 ~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~ 217 (548)
..|.++||-+-- .+..++..++|.|.+|-.+.|+||||||||+|+|+|.|+- +..|..-.++|.+|.......
T Consensus 480 ~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 480 NGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGG 559 (728)
T ss_pred cceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcC
Confidence 458899988765 4566889999999999999999999999999999999851 234555568888876543221
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGG 296 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGG 296 (548)
+..++++-.+. . .+. ....+.......+ ... -..+.++.+- |++ .. ..--..||||
T Consensus 560 tlRDQIIYPdS-~----e~~---~~kg~~d~dL~~i---L~~----------v~L~~i~qr~~g~d-a~-~dWkd~LsgG 616 (728)
T KOG0064|consen 560 TLRDQIIYPDS-S----EQM---KRKGYTDQDLEAI---LDI----------VHLEHILQREGGWD-AV-RDWKDVLSGG 616 (728)
T ss_pred cccceeecCCc-H----HHH---HhcCCCHHHHHHH---HHH----------hhHHHHHHhccChh-hh-ccHHhhccch
Confidence 11111110000 0 000 0000000000000 000 0011222222 232 11 1122469999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 297 WRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 297 qkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+|||+++||.+.+.|..-+|||-||+..+.....+.+..++++.++|-|||..... .+-++++.++
T Consensus 617 ekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslw-k~h~~ll~~d 682 (728)
T KOG0064|consen 617 EKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLW-KYHTHLLEFD 682 (728)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHH-HHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999877 4667777663
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=183.79 Aligned_cols=180 Identities=27% Similarity=0.318 Sum_probs=129.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l 233 (548)
.+|+|+||+|++|++++|+|+|||||||||++|+|.. ...|++|.+..-...+. ..+...
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~--------a~iPge------ 462 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS--------ALIPGE------ 462 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh--------hccCcc------
Confidence 5799999999999999999999999999999999853 24566666543221110 000000
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh-hhhcccCCCCHHHHHHHHHHHHHccCCC
Q psy11936 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA-MQDRATKNFSGGWRMRVSLARALYIEPT 312 (548)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~-~~~~~~~~LSGGqkqRvaLAraL~~~P~ 312 (548)
++..+...+ +++.+....+ .-..+.++|.+.|+.+. +..+..++||-||+-|+.||+++...|+
T Consensus 463 ------~Ep~f~~~t-------ilehl~s~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn 527 (593)
T COG2401 463 ------YEPEFGEVT-------ILEHLRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN 527 (593)
T ss_pred ------cccccCchh-------HHHHHhhccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC
Confidence 000000011 1222221111 22346679999999764 3456788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhh-cCEEEEEeCCEEE
Q psy11936 313 LLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNV-CNEIIHLDQQKLY 368 (548)
Q Consensus 313 lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~ 368 (548)
+++.||-.+|||+.+...+..-|. +.+.|+++|||..++.+.+ -|.++.+.-|...
T Consensus 528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999999999998776665554 4578999999999999998 7888888766543
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-19 Score=167.40 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 293 FSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
|||||+||++|||+|+ .+|+++||||||++||+.....+.++|..+ +.|+|+|||+.+.+. .||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999888888765 479999999999875 7999999864
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=163.89 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+||+||++|++||++|+. +|+++|||||+++||+.....+.+.+.++ +.++|++||+.+++. .+|++++|..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 499999999999999987 78999999999999999888777766554 469999999999986 5899999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=209.29 Aligned_cols=194 Identities=21% Similarity=0.201 Sum_probs=135.1
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~ 349 (548)
.|..+||....+++.+.+|||||+|||+||+||+.+| .+|||||||++||+..+..|.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4567788643358999999999999999999999999 899999999999999999999888765 57999999999
Q ss_pred HHHHhhcCEEEEEe------CCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy11936 350 SFLDNVCNEIIHLD------QQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRK 423 (548)
Q Consensus 350 ~~l~~vadrIi~L~------~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~ 423 (548)
+++ .+||+|++|. +|+++. .|+++.+...... + ..
T Consensus 539 ~vi-~~aDrVi~L~pGag~~gG~Iv~-~G~~~eil~~~~~---------------l---~~------------------- 579 (1809)
T PRK00635 539 QMI-SLADRIIDIGPGAGIFGGEVLF-NGSPREFLAKSDS---------------L---TA------------------- 579 (1809)
T ss_pred HHH-HhCCEEEEEcCCcccCCCEEEE-ecCHHHHhhChHH---------------H---HH-------------------
Confidence 955 7899999996 678764 6776665321000 0 00
Q ss_pred HHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc-
Q psy11936 424 QEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR- 501 (548)
Q Consensus 424 ~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~- 501 (548)
.... ... ... .|...+....+|++++++. ..|+++|+.. .|+.+.|.|+|
T Consensus 580 ------~~l~--~~~-~~~-------------~~~~~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nG 631 (1809)
T PRK00635 580 ------KYLR--QEL-TIP-------------IPEKRTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSG 631 (1809)
T ss_pred ------HHhc--Ccc-ccc-------------CcccccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCC
Confidence 0000 000 000 0000011234788888863 2689999975 88889998885
Q ss_pred ---cceee---------ccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 502 ---EYVVK---------FSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 502 ---~~~~~---------~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
|||++ ++.|+.+|..+ +-++|==++-+++|.|.-
T Consensus 632 SGKSTLl~~~L~~~l~~~l~~~~~~~~~-i~g~~i~~vi~idQspig 677 (1809)
T PRK00635 632 SGKSSLINDTLVPAVEEFIEQGFCSNLS-IQWGAISRLVHITRDLPG 677 (1809)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccccc-ccccccceeEEecCCCCC
Confidence 78887 77887544332 222333367888898864
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=200.89 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=88.2
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
+.|..+||....+++++.+|||||+|||+||++|+.+| .+|||||||++||+..+.+|.++|+++ +.|||+||||
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 34777888643368999999999999999999999986 899999999999999999999988765 5799999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. +||+|++| ++|+|+. .|+.+.+
T Consensus 549 ~~~i~-~aD~vi~LgpgaG~~~G~Iv~-~g~~~el 581 (924)
T TIGR00630 549 EETIR-AADYVIDIGPGAGIHGGEVVA-SGTPEEI 581 (924)
T ss_pred HHHHh-hCCEEEEecccccCCCCEEee-ccCHHHH
Confidence 99986 89999999 8999875 4665543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=167.86 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=62.8
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
...+.+|++++| +..+.+++.+|+++||||||++||+.....+ .+.+.+.+.++|++||+.+++. .|+++..+.
T Consensus 87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~ 164 (202)
T cd03243 87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVK 164 (202)
T ss_pred CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeE
Confidence 345677777775 6666788899999999999999999765544 3344455789999999998876 577888888
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
.+++...
T Consensus 165 ~~~~~~~ 171 (202)
T cd03243 165 NLHMEEL 171 (202)
T ss_pred EEEEEEE
Confidence 8887643
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=167.09 Aligned_cols=77 Identities=26% Similarity=0.274 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc---C
Q psy11936 290 TKNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC---N 357 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va---d 357 (548)
...||+||+|+++||++|+ .+|++|||||||++||+..+.++.+.|.+++ .++++||+...+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998876 6777888888888888 7
Q ss_pred EEEEEeCCEE
Q psy11936 358 EIIHLDQQKL 367 (548)
Q Consensus 358 rIi~L~~G~i 367 (548)
+|+.|++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=159.54 Aligned_cols=141 Identities=19% Similarity=0.124 Sum_probs=97.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
...+++|++|++..|++++|+||||+||||||++|++..+ ...-| -.+ +
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-la~~G------~~v----------------------p-- 63 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-MAQIG------CFV----------------------P-- 63 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-HHHcC------CCc----------------------c--
Confidence 4568999999999999999999999999999999986310 00000 000 0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
....... ..+.++..++..+ ...+..++||+|++++ ..+.+++.+|+++|||
T Consensus 64 ----a~~~~l~----------------------~~d~I~~~~~~~d-~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllD 115 (204)
T cd03282 64 ----AEYATLP----------------------IFNRLLSRLSNDD-SMERNLSTFASEMSET-AYILDYADGDSLVLID 115 (204)
T ss_pred ----hhhcCcc----------------------ChhheeEecCCcc-ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEec
Confidence 0000000 0112334445543 3456778999999965 5666688999999999
Q ss_pred CCCCCCCHHHH----HHHHHHHhhcCCeEEEEecCHHHHHhhcC
Q psy11936 318 EPTNHLDLNAV----IWLDNYLQGWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 318 EPTn~LD~~s~----~~L~~~L~~~~~TvIiVSHD~~~l~~vad 357 (548)
||++++|+... ..+.+.+.+.+.++|++||+.+++..+++
T Consensus 116 E~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 116 ELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 99999998642 23455555668899999999999987664
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=176.71 Aligned_cols=108 Identities=25% Similarity=0.365 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
-.+..+.|..+||.--.+.++..+|||||.|||-||.-|.... .++||||||.||-..-+..|++.|.++ +.||
T Consensus 799 I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTV 878 (935)
T COG0178 799 IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTV 878 (935)
T ss_pred HHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3455567888899766678999999999999999999999888 999999999999999999988888765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEEe------CCEEEEEcCCHHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHLD------QQKLYYYKGNYSMFK 378 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L~------~G~i~~~~g~y~~f~ 378 (548)
|+|.|+++.+. .||.|+-|- .|+|+. .|+.++..
T Consensus 879 iVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva-~GTPeeva 918 (935)
T COG0178 879 IVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVA-SGTPEEVA 918 (935)
T ss_pred EEEecccceEe-ecCEEEEcCCCCCCCCceEEE-ecCHHHHH
Confidence 99999999884 699999984 467775 56666544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-17 Score=186.17 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=89.9
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
++|..+||....+++++.+|||||+|||+||++|+.+| .||||||||++||+..+.+|.++|+++ +.|||+||||
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36888899743368999999999999999999999997 999999999999999999999988764 6799999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. .||+|++| ++|+++ +.|+++.+
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~ 583 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEI 583 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEe-eccCHHHH
Confidence 99986 69999999 889987 46777665
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=154.12 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=39.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhh--cCEEE
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNV--CNEII 360 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~v--adrIi 360 (548)
.+|++|||||||++||+.....+ .+.+.+.+.|+|+||||.+++..+ .++|-
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~ 161 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVR 161 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeE
Confidence 59999999999999999876533 333444578999999999998765 44443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=160.84 Aligned_cols=174 Identities=26% Similarity=0.344 Sum_probs=121.9
Q ss_pred EeCC-ceeeEeeeEEEECCc-----EEEEECCCCCcHHHHHHHHHcCCCCCCCCe------EEEEeceeeccCchhHHHH
Q psy11936 155 SAKG-NDLFVNANLLIANGR-----RYGLVGPNGHGKTTLLRHIASRDLKVPPNI------DILYCEQEVVADDLTAVES 222 (548)
Q Consensus 155 ~y~~-~~iL~~vsl~I~~Ge-----~igLvGpNGsGKSTLLklLaG~~~~~~~~g------~I~~~~q~i~~~~~~~~~~ 222 (548)
+|.+ +..+.+..|.|..|+ ++..+|.||.|||||+++++|.. .|+.+ .|.|.+|.+.......++.
T Consensus 344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~--~pd~~~e~p~lnVSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRL--KPDEGGEIPVLNVSYKPQKISPKREGTVRQ 421 (592)
T ss_pred ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCC--CCCccCcccccceeccccccCccccchHHH
Confidence 3543 346788899999885 68899999999999999999853 34433 5677777665432222221
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+....+ . .+....-+..+++-|.+. ...++.+.+||||+.|||+
T Consensus 422 ll~~kIr-----~-----------------------------ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRva 466 (592)
T KOG0063|consen 422 LLHTKIR-----D-----------------------------AYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVA 466 (592)
T ss_pred HHHHHhH-----h-----------------------------hhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHH
Confidence 1111000 0 000111223344444444 3567889999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
||.+|-..++++|.|||.+.||.+.+..- .+++...+.|-.+|.||.-.+.-++||+++.+..
T Consensus 467 l~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 467 LALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred HHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 99999999999999999999999876544 4444455789999999998888889999998743
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=148.87 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=56.4
Q ss_pred CCCHHHHHH----HHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHhhc-CCeEEEEecCHHHHHhhcCEEE
Q psy11936 292 NFSGGWRMR----VSLARAL--YIEPTLLLLDEP---TNHLDLNAV-IWLDNYLQGW-KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 292 ~LSGGqkqR----vaLAraL--~~~P~lLLLDEP---Tn~LD~~s~-~~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi 360 (548)
++|+|+.+. +.|++++ +.+|.++||||| |++||..+. ..+.++|.+. +.++|++||+.++ ..+++++.
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~ 163 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLP 163 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCC
Confidence 345554443 3455555 579999999999 999998764 5567777776 7899999999755 45788876
Q ss_pred EEeCCEEEE
Q psy11936 361 HLDQQKLYY 369 (548)
Q Consensus 361 ~L~~G~i~~ 369 (548)
.+.+|.+..
T Consensus 164 ~v~~~~~~~ 172 (216)
T cd03284 164 RVKNFHVAV 172 (216)
T ss_pred CeEEEEEEE
Confidence 666676654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=154.97 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEec
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSH 347 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSH 347 (548)
...+++..+.|. ..+++-+..||||+-||.+||.+.++.+++.++|||.+.||...+......++.+ ..=||+|.|
T Consensus 193 ~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH 271 (592)
T KOG0063|consen 193 NKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH 271 (592)
T ss_pred cHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence 345566666775 3568889999999999999999999999999999999999998776655555543 467999999
Q ss_pred CHHHHHhhcCEEEEEeC
Q psy11936 348 DQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 348 D~~~l~~vadrIi~L~~ 364 (548)
|++.++-+.|-|..|..
T Consensus 272 DLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 272 DLSVLDYLSDFICCLYG 288 (592)
T ss_pred echHHHhhhcceeEEec
Confidence 99999999999988863
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=144.99 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=54.8
Q ss_pred HhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCeEEEEecCHHH
Q psy11936 277 AGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQG-WKKTLLIVSHDQSF 351 (548)
Q Consensus 277 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~-~~~TvIiVSHD~~~ 351 (548)
..++..+ ..+...++||+|++|...+++ .+.+|+++|+||||+++|+.....+ .+.+.+ .+.++|++||+.+
T Consensus 47 ~~~~~~d-~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~- 123 (185)
T smart00534 47 TRIGASD-SLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE- 123 (185)
T ss_pred EEeCCCC-chhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-
Confidence 3445443 346678899999887433333 2359999999999999999854443 233333 3679999999996
Q ss_pred HHhhcCE
Q psy11936 352 LDNVCNE 358 (548)
Q Consensus 352 l~~vadr 358 (548)
+..+|++
T Consensus 124 l~~~~~~ 130 (185)
T smart00534 124 LTKLADE 130 (185)
T ss_pred HHHHhhc
Confidence 4567774
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=158.73 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=93.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECC-cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANG-RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~G-e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|.+.++.+-+-...-+-.+|+++..| ++++|+||||+|||||||+|+|..+ .+..|. .+.......
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l-~aq~G~------~Vpa~~~~~----- 362 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL-MFQSGI------PIPANEHSE----- 362 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH-HHHhCC------CccCCcccc-----
Confidence 366666654221111123478999887 8999999999999999999987411 111110 000000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++ ..++..+|.. ......+++||+|+++++.|+
T Consensus 363 ------~~~~--------------------------------------d~i~~~i~~~-~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 363 ------IPYF--------------------------------------EEIFADIGDE-QSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ------ccch--------------------------------------hheeeecChH-hHHhhhhhHHHHHHHHHHHHH
Confidence 0000 0001111111 122345778999999999998
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
+++ .+|.|+|||||++|+|+.....| .+.+...+.++|++||+.++..
T Consensus 398 ~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 398 SKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred Hhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 877 78999999999999999876655 3344455789999999988643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-15 Score=174.42 Aligned_cols=204 Identities=21% Similarity=0.222 Sum_probs=135.6
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~-~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
..+|+|+|+-+++|+.+.++||.||||||||++|+|.... ....+.|.|+|.+....-... ...+..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~----------~~aY~~-- 195 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKK----------TVAYNS-- 195 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCc----------eEEecc--
Confidence 3699999999999999999999999999999999996321 222347888887653211100 000000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhc----CCCChH----HHHHHHHHhCCCChh----hhhcccCCCCHHHHHHHHHHH
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAI----GADSAE----PRARRILAGLGFSRA----MQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~----~~~~~~L~~lgl~~~----~~~~~~~~LSGGqkqRvaLAr 305 (548)
+.......+++.+.+.... ..... ..-... ...+.+|+.+|++.. ..|..+.-.|||||+||.+|-
T Consensus 196 -e~DvH~p~lTVreTldFa~-rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E 273 (1391)
T KOG0065|consen 196 -EQDVHFPELTVRETLDFAA-RCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGE 273 (1391)
T ss_pred -ccccccceeEEeehhhHHH-hccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeee
Confidence 0001111223322222111 11110 000111 135578999999732 234455679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEec-CHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSH-DQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSH-D~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+++.++.++.+||+|+|||..+.-.+...|+.. +.|+++.=| =...+-.+.|.|++|.+|.++++ |+.+.-
T Consensus 274 ~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~-Gp~d~~ 349 (1391)
T KOG0065|consen 274 MLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ-GPRDEV 349 (1391)
T ss_pred eeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEe-ccHHHH
Confidence 999999999999999999999998888888765 345555444 34445567899999999999966 666653
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=148.48 Aligned_cols=79 Identities=29% Similarity=0.299 Sum_probs=70.9
Q ss_pred ccCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc--C
Q psy11936 289 ATKNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC--N 357 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va--d 357 (548)
....+|+||+++++||++|+ .+|+||||||||++||+..+..|.++|..++..++++||+...+..+| +
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 44679999999999999986 799999999999999999999999999876779999999998877764 5
Q ss_pred EEEEEeCCEE
Q psy11936 358 EIIHLDQQKL 367 (548)
Q Consensus 358 rIi~L~~G~i 367 (548)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7999999987
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=136.25 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHHHHHHH---hhc---CCeEEEEecCHHHHHhhc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-VIWLDNYL---QGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s-~~~L~~~L---~~~---~~TvIiVSHD~~~l~~va 356 (548)
-+.+|+++|++++.+|.++|||||++++|+.. ...+..++ .+. +.++|++||+.+++..+.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 46799999999999999999999999999853 33323333 322 238999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-14 Score=137.34 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=72.8
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
..+....|||+++-++.+++..+.+|++||||| |+.++|......+.+++ +.+.++|+|+|+. .+..++|+|..+.
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~ 149 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRP 149 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccC
Confidence 345667899999999999999999999999999 77788988888888888 6789999999995 5557899999999
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
+|+|+..
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999876
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=132.93 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=64.9
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLL 343 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvI 343 (548)
..+...+..+++... .||||||.+++||-.| ..+.+++|||||.++||...+..|.++|.+.. .-+|
T Consensus 121 ~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~i 193 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFI 193 (220)
T ss_dssp HHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345566777776532 8999999999999776 35789999999999999999999999999886 7899
Q ss_pred EEecCHHHHHhhcCEEEEEe
Q psy11936 344 IVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 344 iVSHD~~~l~~vadrIi~L~ 363 (548)
+|||+..++. .||+.+.+.
T Consensus 194 i~Th~~~~~~-~a~~~~~v~ 212 (220)
T PF02463_consen 194 ITTHNPEMFE-DADKLIGVT 212 (220)
T ss_dssp EE-S-HHHHT-T-SEEEEEE
T ss_pred cccccccccc-ccccccccc
Confidence 9999988876 578887653
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=149.46 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=61.7
Q ss_pred hhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL----DNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
....+++||+||++++.|++++ .+|.|+|||||++|+|+.....+ .+.+...+.++|++||+.++....+++..+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3456789999999999999998 89999999999999999765444 344455578999999999988777765544
Q ss_pred E
Q psy11936 362 L 362 (548)
Q Consensus 362 L 362 (548)
+
T Consensus 463 ~ 463 (782)
T PRK00409 463 E 463 (782)
T ss_pred E
Confidence 3
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=133.53 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=82.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHH
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQQE 251 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (548)
.-++|+||||||||||+++|+|. ..+..|++.+.++.+...+ ...+.. ....+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~--~~~~~G~i~~~g~~v~~~d~~~ei~~-------~~~~~~q--------------- 167 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI--LSTGISQLGLRGKKVGIVDERSEIAG-------CVNGVPQ--------------- 167 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc--cCCCCceEEECCEEeecchhHHHHHH-------Hhccccc---------------
Confidence 46899999999999999999985 4678899999988874321 100000 0000000
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q psy11936 252 QLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWL 331 (548)
Q Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L 331 (548)
........-|.+=.+....++.+++++|++||||||++. .....+
T Consensus 168 --------------------------------~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l 212 (270)
T TIGR02858 168 --------------------------------HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEAL 212 (270)
T ss_pred --------------------------------ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHH
Confidence 000000111111111222344444479999999999854 334444
Q ss_pred HHHHhhcCCeEEEEecCHHH--H-----------HhhcCEEEEEeCCE
Q psy11936 332 DNYLQGWKKTLLIVSHDQSF--L-----------DNVCNEIIHLDQQK 366 (548)
Q Consensus 332 ~~~L~~~~~TvIiVSHD~~~--l-----------~~vadrIi~L~~G~ 366 (548)
.+.+. .+.|+|++||+... + ..+++|+++|++|+
T Consensus 213 ~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 213 LEALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 44444 47899999998766 4 25689999999765
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=126.08 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=34.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+.+|++|.+..|++++|+||||+||||||++|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999999999999999987
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=123.88 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCCHHH--------HHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-H-HHHHHHhhcCCeEEEEecCHHHHHhhcCEEE
Q psy11936 291 KNFSGGW--------RMRVSLARALYIEPTLLLLDEPTNHLDLNAV-I-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 291 ~~LSGGq--------kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~-~-~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi 360 (548)
..+|||+ +||+++||++..+++|++| ||+.+|..+. . -+.+.++....|.|++||++.... ..+.|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~ 204 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAID 204 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEE
Confidence 3479999 9999999999999999999 9999995322 2 345556555689999999999885 589999
Q ss_pred EEeCCEEE
Q psy11936 361 HLDQQKLY 368 (548)
Q Consensus 361 ~L~~G~i~ 368 (548)
+|+.|.++
T Consensus 205 vl~s~sr~ 212 (249)
T cd01128 205 ILKSGTRK 212 (249)
T ss_pred EcCCCCcc
Confidence 99999974
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-12 Score=154.10 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=73.1
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH
Q psy11936 285 MQDRATKNFSGGWRMRVSLARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF 351 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~ 351 (548)
..++++.+|||||++||+||+||+. +|++|||||||++||+.+...+.+.|..+ +.+|+||||+.++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 3467899999999999999999986 79999999999999999999888888654 5799999999999
Q ss_pred HHhhcCEEEEEeCC
Q psy11936 352 LDNVCNEIIHLDQQ 365 (548)
Q Consensus 352 l~~vadrIi~L~~G 365 (548)
...+|++|+|+..+
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=143.34 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=69.7
Q ss_pred cccCCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHHHhh
Q psy11936 288 RATKNFSGGWRMRVSLARALY----------IEPTLLLLDEPT-NHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~----------~~P~lLLLDEPT-n~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l~~v 355 (548)
.++.+|||||+||++||+||+ .+|++||||||| ++||+.+...+.++|..+ +.|||+|||+..+. ..
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~-~~ 542 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDP-QK 542 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhch-hh
Confidence 356899999999999999987 599999999998 789999999999999886 45999999997766 56
Q ss_pred cCEEEEEeC-CEEE
Q psy11936 356 CNEIIHLDQ-QKLY 368 (548)
Q Consensus 356 adrIi~L~~-G~i~ 368 (548)
||++++|.+ |+..
T Consensus 543 ~d~~~~l~~~~~~~ 556 (562)
T PHA02562 543 FDRHLKMEKVGRFS 556 (562)
T ss_pred hhcEEEEEEECCee
Confidence 999999986 5543
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=147.26 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=66.1
Q ss_pred cccCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cC--CeEEEEecCHHHHHhh
Q psy11936 288 RATKNFSGGWRMRVSL------ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WK--KTLLIVSHDQSFLDNV 355 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaL------AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~--~TvIiVSHD~~~l~~v 355 (548)
.++..|||||++||+| |++|+.+|++|||||||+|||+....+|.++|.. .+ .|||+||||+.++ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999975 5999999999999999999999999998887753 22 3899999999988 58
Q ss_pred cCEEEEEe
Q psy11936 356 CNEIIHLD 363 (548)
Q Consensus 356 adrIi~L~ 363 (548)
||+|+.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=142.71 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 291 KNFSGGWRMRVSLARALYIE----PTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~----P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
..|||||++||+||++++.. |++|||||||++||+.+...+.++|..+ +.|||+|||++.++. +||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 46899999999999999985 6999999999999999999999988875 579999999999885 8999999987
Q ss_pred CE
Q psy11936 365 QK 366 (548)
Q Consensus 365 G~ 366 (548)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 54
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=121.72 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----CHHHHHHHHHHHhhc---CCeEEEEecCHHHH--------
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHL----DLNAVIWLDNYLQGW---KKTLLIVSHDQSFL-------- 352 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~L----D~~s~~~L~~~L~~~---~~TvIiVSHD~~~l-------- 352 (548)
.+|++..++..+++.+-. +|+++++||||+++ |+.....+.++++.+ +. ++++||+...+
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~-tvi~t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNK-VIILTANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCC-EEEEEecccccccccceeE
Confidence 367776666666655544 69999999999999 777777777777643 44 55557776543
Q ss_pred HhhcCEEEEEe
Q psy11936 353 DNVCNEIIHLD 363 (548)
Q Consensus 353 ~~vadrIi~L~ 363 (548)
..+||-|+.|+
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 34567777665
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=137.85 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=83.7
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQ---GWKKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~---~~~~TvIiVSHD~ 349 (548)
.|-.+||.---++|...+|||||.||+.||.-+-+.= =+++||||+-||-+.--+.|.+.|+ +.+.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 3555688755678999999999999999999997654 4889999999999987777776665 4578999999999
Q ss_pred HHHHhhcCEEEEEe------CCEEEEEcCCHHHHHH
Q psy11936 350 SFLDNVCNEIIHLD------QQKLYYYKGNYSMFKK 379 (548)
Q Consensus 350 ~~l~~vadrIi~L~------~G~i~~~~g~y~~f~~ 379 (548)
+.+. .||+|+-|- .|.|+ +.|+++++.+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLA 577 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHh
Confidence 9885 599999984 45666 6799887643
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=119.16 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=44.7
Q ss_pred ccCCCCHH--HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q psy11936 289 ATKNFSGG--WRMRVSLARALYIEPTLLLLDEPT-----NHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 289 ~~~~LSGG--qkqRvaLAraL~~~P~lLLLDEPT-----n~LD~~s~~~L~~~L~~~ 338 (548)
.++.+||+ +++++.||++++.+|++++||||| ++||+.++..+.+++.++
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 34556665 999999999999999999999999 999999999999999875
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-12 Score=146.28 Aligned_cols=76 Identities=32% Similarity=0.460 Sum_probs=66.6
Q ss_pred hcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcC
Q psy11936 287 DRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 287 ~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vad 357 (548)
+.++..|||||++ |++||++|+.+|++|||||||++||+..+..+.++|..+ +.|||+||||++++ .+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence 3678899999999 556667888999999999999999999999999888764 36899999999876 5799
Q ss_pred EEEEEe
Q psy11936 358 EIIHLD 363 (548)
Q Consensus 358 rIi~L~ 363 (548)
+|++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=115.58 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred hhcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHH---HHhhcCCeEEEEecCHHH--
Q psy11936 286 QDRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDN---YLQGWKKTLLIVSHDQSF-- 351 (548)
Q Consensus 286 ~~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD---~~s~~~L~~---~L~~~~~TvIiVSHD~~~-- 351 (548)
.+..+..+|+|+.+ ....+.+...+|+++++||||+.+| ......+.+ .++..+.|+|+|+|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 45677889999998 5555666778999999999999999 655554444 445567899999998775
Q ss_pred -------HHhhcCEEEEEe
Q psy11936 352 -------LDNVCNEIIHLD 363 (548)
Q Consensus 352 -------l~~vadrIi~L~ 363 (548)
+..+||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 678899999987
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.3e-11 Score=116.12 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=83.7
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCC-CeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPP-NIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
++..+-+|++|++.+|++++|+||||+||||||++|++.. .+.|. ..++.+.++-
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i------------------ 76 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRI------------------ 76 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEE------------------
Confidence 3457899999999999999999999999999999997531 11111 1111111110
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
+..++-.+.. ....++++ .+-++++-....+.
T Consensus 77 ----------------------------------------------~~~~~~~d~~-~~~~StF~-~e~~~~~~il~~~~ 108 (218)
T cd03286 77 ----------------------------------------------FTRIGARDDI-MKGESTFM-VELSETANILRHAT 108 (218)
T ss_pred ----------------------------------------------EEecCccccc-ccCcchHH-HHHHHHHHHHHhCC
Confidence 0111111000 00011111 34444544444567
Q ss_pred CCCEEEEeCCCCCCCHHHHH---H-HHHHHhhc-CCeEEEEecCHHHHHhhc
Q psy11936 310 EPTLLLLDEPTNHLDLNAVI---W-LDNYLQGW-KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~---~-L~~~L~~~-~~TvIiVSHD~~~l~~va 356 (548)
+|.++|||||+.|+|+.... + +.++|.+. +.++|++||+.+++..++
T Consensus 109 ~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 109 PDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 89999999999888875432 2 24455554 789999999999988775
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=136.21 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 292 NFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
.|||||++||+||++++. +|++|||||||++||..+...+.+.|... +.+||+|||++..+ .+||+++.+..+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999997 68999999999999999999999999876 36999999999877 689999999864
Q ss_pred E
Q psy11936 366 K 366 (548)
Q Consensus 366 ~ 366 (548)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-11 Score=149.44 Aligned_cols=69 Identities=28% Similarity=0.457 Sum_probs=62.3
Q ss_pred ccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCeEEEEecCHHHHHh
Q psy11936 289 ATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--------KKTLLIVSHDQSFLDN 354 (548)
Q Consensus 289 ~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--------~~TvIiVSHD~~~l~~ 354 (548)
..+.|||||+| |++||+||+.+|+||||||||++||+.+..+|...|..+ +.||||||||+.|+..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44789999999 999999999999999999999999999999888777653 5699999999999998
Q ss_pred hcC
Q psy11936 355 VCN 357 (548)
Q Consensus 355 vad 357 (548)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=124.39 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
+..+++++ |.|.+|++++|+|+||+|||||+++|+|. ..+..+.|.+.|+.-. + +..+......... +...
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~--~~~~~gvI~~~Gerg~--e---v~e~~~~~l~~~~-l~r~ 215 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARN--TSADLNVIALIGERGR--E---VREFIERDLGPEG-LKRS 215 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEEecCCc--c---HHHHHHhhcChhh-hcCe
Confidence 44689999 99999999999999999999999999984 3566677776655321 1 1111000000000 0000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
..+.+ ..+......+.. .+ .--.+.+.+..-|-+-- -.+.+|+ |. |+|+-. =-|.+.
T Consensus 216 v~vv~-~~~~~~~~r~~~---------~~-~a~~iAEyfr~~g~~Vl---l~~Dslt-----r~--A~A~rE--isl~~g 272 (438)
T PRK07721 216 IVVVA-TSDQPALMRIKG---------AY-TATAIAEYFRDQGLNVM---LMMDSVT-----RV--AMAQRE--IGLAVG 272 (438)
T ss_pred EEEEE-CCCCCHHHHHHH---------HH-HHHHHHHHHHHCCCcEE---EEEeChH-----HH--HHHHHH--HHHhcC
Confidence 00000 000001100000 00 11112222322232100 0011121 11 111100 001223
Q ss_pred CC--CCCCCHHHHHHHHHHHhhcC----C------eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 318 EP--TNHLDLNAVIWLDNYLQGWK----K------TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 318 EP--Tn~LD~~s~~~L~~~L~~~~----~------TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|| |+|+|+.....+.+++.+.+ + ||++.|||++. .+||++..|.+|+++..
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls 335 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLD 335 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEe
Confidence 64 78999999998888887653 3 89999999984 79999999999999865
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=125.25 Aligned_cols=162 Identities=22% Similarity=0.191 Sum_probs=107.1
Q ss_pred EEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 147 IKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 147 I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
++...++..|. +..+++. .|.+.+|++++|+|+||+|||||+++|++. ..+..+.|.+.++... .+..+
T Consensus 131 ~~r~~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~~~gvI~~iGerg~-----ev~e~-- 200 (432)
T PRK06793 131 FEREEITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKN--AKADINVISLVGERGR-----EVKDF-- 200 (432)
T ss_pred hheechhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhcc--CCCCeEEEEeCCCCcc-----cHHHH--
Confidence 55566776674 4567777 499999999999999999999999999985 3455666665554321 00000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+ ...+..-|+.....=....+.|.|+|.|++.+.
T Consensus 201 --------~--------------------------------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 201 --------I--------------------------------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred --------H--------------------------------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence 0 001111122111112345788999999999999
Q ss_pred HHc-------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALY-------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~-------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+.+ .++-+||+|+||++.|+. .++...+.+. +.+..+.||-..++++ +-.+..|.|+.+
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ER----ag~~~~GSiT~~ 303 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLER----SGKTQKGSITGI 303 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHH----hccCCCcceEEE
Confidence 988 789999999999999997 3333344443 3577777885555544 333567877543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-11 Score=140.90 Aligned_cols=78 Identities=29% Similarity=0.277 Sum_probs=71.0
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI--------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~--------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v 355 (548)
.+++.+|||||+++|+||+||+. +|++|||||||++||+.+...+.+.|..+ +.||+||||...+.+++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47899999999999999999996 89999999999999999999888888654 57999999999999999
Q ss_pred cCEEEEEeC
Q psy11936 356 CNEIIHLDQ 364 (548)
Q Consensus 356 adrIi~L~~ 364 (548)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 999888764
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-11 Score=140.77 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=67.8
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++..|||||++|++||++|+ .+|+++||||||++||+.++..|.++|..+ +.+||||||++.++ .+||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence 45688899999999999999984 678999999999999999999999988775 36899999999987 579999
Q ss_pred EEEe
Q psy11936 360 IHLD 363 (548)
Q Consensus 360 i~L~ 363 (548)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=102.13 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+.....|-||----.+.+.+ .+--|+|||||-++|.+.-+..|...|.++ +.-|||+||..-++.-=.-+|+.++.
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec
Confidence 44567899997665555554 567899999999999999988888887765 56899999998877654668999988
Q ss_pred CEEEEEcCCHHH
Q psy11936 365 QKLYYYKGNYSM 376 (548)
Q Consensus 365 G~i~~~~g~y~~ 376 (548)
+.+.. -+|++
T Consensus 204 ~g~~~--~~fe~ 213 (233)
T COG3910 204 SGIEE--RDFEE 213 (233)
T ss_pred CCccc--cchHH
Confidence 87643 45554
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=124.64 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=53.2
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHhh---cCCeEEEEecCHHHHH---------hhcCEEEEEeCCEEEE
Q psy11936 308 YIEPTLLLLDEPTNHL-DLNAVIWLDNYLQG---WKKTLLIVSHDQSFLD---------NVCNEIIHLDQQKLYY 369 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~L-D~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~---------~vadrIi~L~~G~i~~ 369 (548)
..+|.++|+|||+.+| |+.....+.++++. .++++|++||+++.+. ..|+++++|.+|++..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 5799999999999999 68888888877764 4689999999999885 4799999999998753
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-10 Score=131.73 Aligned_cols=76 Identities=29% Similarity=0.539 Sum_probs=65.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhcC----CeEEEEecCHHHH
Q psy11936 289 ATKNFSGGWRM------RVSLARALYIE-----P-TLLLLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQSFL 352 (548)
Q Consensus 289 ~~~~LSGGqkq------RvaLAraL~~~-----P-~lLLLDEPTn~LD~~s~~~L~~~L~~~~----~TvIiVSHD~~~l 352 (548)
++..|||||++ |++||++++.. | +++||||||++||+..+.++.++|..+. .+|||||||..++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 99999999864 2 6799999999999999999998887652 3799999999999
Q ss_pred HhhcCEEEEEeCC
Q psy11936 353 DNVCNEIIHLDQQ 365 (548)
Q Consensus 353 ~~vadrIi~L~~G 365 (548)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 5 69999999643
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-10 Score=134.09 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi 360 (548)
.+++..|||||+++++||++|+. +|+++||||||++||+..+..+..+|..+ +.++|||||+..++ .+||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeE
Confidence 45678999999999999999984 78999999999999999999999999876 36899999999876 6899998
Q ss_pred EEe
Q psy11936 361 HLD 363 (548)
Q Consensus 361 ~L~ 363 (548)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 775
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-10 Score=101.35 Aligned_cols=61 Identities=13% Similarity=-0.100 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHHHHHHHHH---HHhhcCCeEEEEecCHHHH
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHL----------DLNAVIWLDN---YLQGWKKTLLIVSHDQSFL 352 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L----------D~~s~~~L~~---~L~~~~~TvIiVSHD~~~l 352 (548)
..+.+...+++.+++...+|+++++|||++.+ |......+.. .+++.+.|+|+|+|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 44566667889999999999999999999654 4433444444 4445678999999987554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-09 Score=104.16 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCeEEEEecCHHH-------HHhh
Q psy11936 291 KNFSGGWRMRVSLARALYI--EPTLLLLDEPTNH---LDLNAVIWLDNYL---QGWKKTLLIVSHDQSF-------LDNV 355 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~--~P~lLLLDEPTn~---LD~~s~~~L~~~L---~~~~~TvIiVSHD~~~-------l~~v 355 (548)
...|.++.+.+.++..++. +|+++++||||+. +|......+...+ ...+.|+|+++|+..+ +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457788999999999887 9999999999964 4455555554444 4457899999998765 3445
Q ss_pred cCEEEEEe
Q psy11936 356 CNEIIHLD 363 (548)
Q Consensus 356 adrIi~L~ 363 (548)
||-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 55555554
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-09 Score=92.35 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|++++|++.+|++++|+||||||||||+++|. +|.+.+.+.++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeH
Confidence 56899999999999999999999999999999986 45676766654
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-09 Score=109.95 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=50.7
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
-.++.+|-++|++|++|||.. .+... +.+.+..-..++|.++|..+.. ..++|++.|..|++...+-+.+.+
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~---~e~~~-~l~a~~~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG---DEAFD-FIRAVNTGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC---HHHHH-HHHHHhcCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 367788999999999999996 33333 2333332224679999999854 568999999888887665555443
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=116.41 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHHHH-HHHHHhhc-CCeEEEEecCHHHHHhhcCE
Q psy11936 290 TKNFSGGWRMRVSLARALYI--EPTLLLLDEP---TNHLDLNAVIW-LDNYLQGW-KKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~--~P~lLLLDEP---Tn~LD~~s~~~-L~~~L~~~-~~TvIiVSHD~~~l~~vadr 358 (548)
...+|--+.-...++.+|-. ++.|+||||| |+.+|-.+..| +.++|.+. +.++|++||+.+.. .++++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~-~l~~~ 738 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT-ELEEK 738 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH-HHhhh
Confidence 34577777777777777755 9999999999 99999877655 77777766 47899999995544 56654
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=119.40 Aligned_cols=76 Identities=32% Similarity=0.410 Sum_probs=64.8
Q ss_pred cccCCCCHHHHHHHHHHHHHc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 288 RATKNFSGGWRMRVSLARALY------IE--PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~------~~--P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
+++.+|||||+-.++||-+|+ .+ -++|+|||||.+||+.++..+.+.|... +.+|||||||.+|.+ .+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence 688999999999887777654 55 7999999999999999999988888764 479999999999986 48
Q ss_pred CEEEEEeC
Q psy11936 357 NEIIHLDQ 364 (548)
Q Consensus 357 drIi~L~~ 364 (548)
|+++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 88888763
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=107.65 Aligned_cols=63 Identities=25% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHH
Q psy11936 291 KNFSGGWRMRVSLARALYI---------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~---------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
..+|.||+++++||.+|+. +|+|||||||+++||+..+..|.++|...+.+|+++||+...+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999776679999999987765
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-09 Score=104.32 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee--------ccceeeeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG--------LHNVTFAYE 530 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~--------~~n~~~~y~ 530 (548)
.+.|+++||++.|++. ++|+||||.. .|.-+.|.||| |||+|+|+|.++|++|+|.. .-+.+|+|+
T Consensus 2 ~~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred CcEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 3679999999999764 7999999975 88999999997 99999999999999999883 224899999
Q ss_pred eccceeeeccCc
Q psy11936 531 GMKPLLVDVRKP 542 (548)
Q Consensus 531 ~~~~~~~~~~~~ 542 (548)
.|+. -+|-.-|
T Consensus 81 PQ~~-~~d~~fP 91 (254)
T COG1121 81 PQKS-SVDRSFP 91 (254)
T ss_pred Cccc-ccCCCCC
Confidence 9987 5665444
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=95.29 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=44.0
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+|+++|..+|+++++|||. |.+....+.+.. ..+.+++.++|..+... .++|++.|
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHHhh
Confidence 5889999999999999996 777776666654 35778999999987664 56777655
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-08 Score=97.91 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHH----hhcCCeEEEEecCHH
Q psy11936 306 ALYIEPTLLLLDEPTNH------LDLNAVIWLDNYL----QGWKKTLLIVSHDQS 350 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~------LD~~s~~~L~~~L----~~~~~TvIiVSHD~~ 350 (548)
+...+|+++|+| |++. +|......+.+.| ...+.|||+|+|..-
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 446899999999 8754 6887766666555 345789999999854
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=76.76 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCeEEEEecC
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN---------YLQGWKKTLLIVSHD 348 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~---------~L~~~~~TvIiVSHD 348 (548)
....+++...+..++++-...|.+||+||+....+......... ........+|+++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44678888899999999988899999999999999887654432 222235688888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5e-08 Score=103.04 Aligned_cols=75 Identities=19% Similarity=0.086 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 291 KNFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
..+|+||+++++||..|+ ..|++|||||||++||...+.+|.++|.....++|..|+ ....|++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 458999999999999998 899999999999999999999999999765444444443 3467999999
Q ss_pred EeCCEEEE
Q psy11936 362 LDQQKLYY 369 (548)
Q Consensus 362 L~~G~i~~ 369 (548)
+.+|++..
T Consensus 338 ~~~~~~~~ 345 (349)
T PRK14079 338 IEAGVFTP 345 (349)
T ss_pred EeccEecC
Confidence 99998763
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-08 Score=107.19 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=45.0
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCch
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDL 217 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~ 217 (548)
.+|++|||+|.+|++++|+|||||||||||+ +|. ..|.+| .|.+.+.++.....
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--~~~~sGg~I~ldg~~~~~~~~ 74 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--RKFSEGYEFFLDATHSFSPNK 74 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--CCCCCCCEEEECCEECCCCCH
Confidence 4799999999999999999999999999999 443 345666 79999988865443
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=99.47 Aligned_cols=179 Identities=20% Similarity=0.179 Sum_probs=93.3
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
+..+++++ |.|.+|++++|+|+||+||||||++|++. ..+..+.+...+..- ..+..+......... +...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~--~~~~~~vi~~iG~r~-----~ev~~~~~~~~~~~~-l~~t 220 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARN--TEADVNVIALIGERG-----REVREFIEHDLGEEG-LKRS 220 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCC--CCCCEEEEEEEeecc-----hHHHHHHHHHhcccc-cceE
Confidence 45689999 99999999999999999999999999975 344445444444321 111111100000000 0000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLD 317 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLD 317 (548)
..+. ...+......+. ..... -.+.+.+...|-+-- -.+.+|+- .|+|+-.= =|.+.
T Consensus 221 vvv~-~~~d~~p~~r~~---------~~~~a-~t~AE~frd~G~~Vl---l~~DslTr-------~A~A~REi--sl~~g 277 (440)
T TIGR01026 221 VVVV-ATSDQSPLLRLK---------GAYVA-TAIAEYFRDQGKDVL---LLMDSVTR-------FAMAQREI--GLAAG 277 (440)
T ss_pred EEEE-ECCCCCHHHHHH---------HHHHH-HHHHHHHHHCCCCEE---EEEeChHH-------HHHHHHHH--HHhcC
Confidence 0000 000011111000 00001 112222322342210 01122221 11111000 03355
Q ss_pred CC--CCCCCHHHHHHHHHHHhhcC---C-------eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 318 EP--TNHLDLNAVIWLDNYLQGWK---K-------TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 318 EP--Tn~LD~~s~~~L~~~L~~~~---~-------TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|| +.|+|+.....+.+++.+.+ + ||++-+||+ .+.+||++..+.+|+++..
T Consensus 278 e~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLs 340 (440)
T TIGR01026 278 EPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLS 340 (440)
T ss_pred CCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEe
Confidence 75 56899998888888887642 4 788899997 4668999999999999864
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-08 Score=109.28 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHhCCCChhhhhcccCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHHH---HHHhhcCCeEEEEecCH
Q psy11936 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLA--RALYIEPTLLLLDEPTNHLDLNAVIWLD---NYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 275 ~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA--raL~~~P~lLLLDEPTn~LD~~s~~~L~---~~L~~~~~TvIiVSHD~ 349 (548)
++..+++. ...++.+..+|+|++|||.|+ .+|...|+.+ ...+..+. ..++..+.|+|+|||+.
T Consensus 99 ~~~~~~l~-~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~ 167 (484)
T TIGR02655 99 VVGGFDLS-ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERI 167 (484)
T ss_pred ccccCCHH-HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 34455664 356778889999999999999 5665655544 33444444 44555688999999987
Q ss_pred HH---------HHhhcCEEEEEe
Q psy11936 350 SF---------LDNVCNEIIHLD 363 (548)
Q Consensus 350 ~~---------l~~vadrIi~L~ 363 (548)
.. ...+||.|+.|+
T Consensus 168 ~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 168 EEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccccCCceeEeeeeEEEEE
Confidence 64 256899999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-07 Score=104.56 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=51.4
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCeEEEEecCHHHHHh--hcCEEEEEeCCEEE
Q psy11936 303 LARALYIEPTLLLLDEPTNHL-DLNAVIWLDNYLQ---GWKKTLLIVSHDQSFLDN--VCNEIIHLDQQKLY 368 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~L-D~~s~~~L~~~L~---~~~~TvIiVSHD~~~l~~--vadrIi~L~~G~i~ 368 (548)
|++++..+|.++|+|||+..| |+.....+.++++ +.++++|++||++..+.. +++.|+.....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 677889999999999999999 6888777777765 457899999999999875 44555444445544
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=116.05 Aligned_cols=77 Identities=26% Similarity=0.180 Sum_probs=63.3
Q ss_pred hhcccCCCCHHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHH
Q psy11936 286 QDRATKNFSGGWRMRVS----LARA--------LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRva----LAra--------L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
.++.++.|||||||+++ +|++ +..+|++|||||||++||+.++..+.+++..++.++||+||+..=..
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~Y 1320 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGCY 1320 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhccc
Confidence 34557899999999996 5655 55899999999999999999999999999999999999999976543
Q ss_pred hhcC--EEEEE
Q psy11936 354 NVCN--EIIHL 362 (548)
Q Consensus 354 ~vad--rIi~L 362 (548)
..+. .|+.|
T Consensus 1321 ~tVp~laI~el 1331 (1353)
T TIGR02680 1321 PEVPGLAICQL 1331 (1353)
T ss_pred cCCCcceEEEE
Confidence 3322 34555
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-07 Score=92.20 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy11936 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325 (548)
Q Consensus 273 ~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~ 325 (548)
.+.|..+.... ....+..++|.|++++..+ .+.+++++|+|.|+.+.++
T Consensus 65 ~~~l~~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 65 ISHLQDLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 34555555442 3466788899998876655 5788999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=98.89 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=36.3
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
++++.++.+..|.+++|||||||||||++..|++......+...|.+...
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 45567777889999999999999999999999974211222224555444
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-07 Score=104.81 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=64.2
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeee-ccce---------eeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILG-LHNV---------TFAYE 530 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~y~ 530 (548)
-|+++||+|+|++++++|+|+||+. .|++++|.|| +|||+|+|+|..+|++|.|+. ++++ .|+|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4999999999986567999999985 9999999999 599999999999999999854 4454 49999
Q ss_pred eccceeee
Q psy11936 531 GMKPLLVD 538 (548)
Q Consensus 531 ~~~~~~~~ 538 (548)
.|+|.|.+
T Consensus 414 ~Q~~~lF~ 421 (529)
T TIGR02868 414 AQDAHLFD 421 (529)
T ss_pred ccCccccc
Confidence 99999875
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-07 Score=94.10 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=60.5
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
.|+++||+|+|++ +++++|+||.. .|+.+.|.||| |||+|+|.|.++|..|+|+. +.++ +++|
T Consensus 2 ~L~~~~ls~~y~~-~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGG-KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECC-eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 6899999999974 79999999985 89999999997 99999999999999997654 4554 6999
Q ss_pred eeccce
Q psy11936 530 EGMKPL 535 (548)
Q Consensus 530 ~~~~~~ 535 (548)
+.|.+.
T Consensus 81 vpQ~~~ 86 (258)
T COG1120 81 VPQSPS 86 (258)
T ss_pred eccCCC
Confidence 999963
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-07 Score=87.63 Aligned_cols=70 Identities=20% Similarity=0.099 Sum_probs=62.3
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
|++++++++|++++++|+++||+. .|+.++|.||| |||+++|.|.++|++|.|+....-.++|+.|+|.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 478999999965467999999985 99999999996 89999999999999999988777789999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-07 Score=90.46 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------ee
Q psy11936 461 PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------TF 527 (548)
Q Consensus 461 ~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------~~ 527 (548)
..++++|.++|++++|++ +++|+++||.. .|+.++|.||| |||+|+|.|.++|++|.|+.. +++ .+
T Consensus 6 ~~~~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 6 HTAPPLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred CCCcceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 346689999999999965 57999999985 89999999996 899999999999999987654 343 38
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+|+.|.|.+.
T Consensus 85 ~~~~q~~~~~ 94 (214)
T PRK13543 85 AYLGHLPGLK 94 (214)
T ss_pred EEeecCcccc
Confidence 8999987654
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-07 Score=85.84 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=52.9
Q ss_pred cccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLD 353 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~ 353 (548)
.+...||.|+++.+.|+.+|+..+ .+||+|||-+||.|..+..|.++|... +.-||++||...+++
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ild 303 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFILD 303 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG--
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhcC
Confidence 356678999999999998888777 899999999999999999999999765 368999999988763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-07 Score=93.34 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeecccee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLL 536 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~ 536 (548)
++|+++||+++|++ +++|+++||+. .|+.+.|.||| |||+|+|.|.++|++|.|+......++|+.|+|.+
T Consensus 3 ~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~ 78 (251)
T PRK09544 3 SLVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78 (251)
T ss_pred cEEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccc
Confidence 47999999999975 67999999985 99999999996 89999999999999999988777789999999854
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.8e-07 Score=84.84 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHH--HHhhcCEEEEEeCC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSF--LDNVCNEIIHLDQQ 365 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~--l~~vadrIi~L~~G 365 (548)
-|+-.|..||.+++.+|..+..+| +-|||.....+.+.+... +.+||+.+|.+.. +..+||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388999999999999999998887 889999999998888765 2589999999865 66789999887643
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-07 Score=91.74 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=63.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-----eeeeeec
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-----TFAYEGM 532 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-----~~~y~~~ 532 (548)
+++|+++||+++|++ +++|+|+||+. .|+.++|.||| |||+|+|+|.++|++|.|+.+ .++ .++|+.|
T Consensus 10 ~~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 578999999999975 67999999985 89999999996 899999999999999987643 332 5899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
.|.+++
T Consensus 89 ~~~l~~ 94 (257)
T PRK11247 89 DARLLP 94 (257)
T ss_pred CccCCC
Confidence 987653
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-07 Score=91.25 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
-|++|+.++|.|++|||||||+..++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999988665
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-07 Score=87.79 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=61.1
Q ss_pred EEEEeeEEEeCCC----CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 467 LGLHNVTFAYEGM----KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 467 L~l~~vs~~Y~~~----~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
|+++||+++|++. +++|+++||+. .|+.+.|.||| |||+++|+|..+|++|.|+... +|+|+.|+|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchhc
Confidence 5789999999754 37999999985 99999999996 8899999999999999987655 899999999776
Q ss_pred e
Q psy11936 538 D 538 (548)
Q Consensus 538 ~ 538 (548)
+
T Consensus 79 ~ 79 (204)
T cd03250 79 N 79 (204)
T ss_pred c
Confidence 4
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=89.79 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
+|+++|-++||++++||+. |.++.....+.. ..+.+|+.+.|-.+
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNS 231 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCC
Confidence 5788999999999999997 888877655543 34678888889843
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-07 Score=89.33 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=63.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce----------ee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV----------TF 527 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~----------~~ 527 (548)
+++|++++|++.|++ +++|+|+||+. .|+.+.|.||| |||+++|+|.++|++|.|+... ++ .+
T Consensus 5 ~~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 468999999999965 67999999985 99999999996 8899999999999999886553 32 58
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|.|.+.+
T Consensus 84 ~~~~q~~~l~~ 94 (225)
T PRK10247 84 SYCAQTPTLFG 94 (225)
T ss_pred EEEeccccccc
Confidence 99999987653
|
|
| >PF12848 ABC_tran_2: ABC transporter | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=69.76 Aligned_cols=53 Identities=30% Similarity=0.485 Sum_probs=48.8
Q ss_pred EEEeCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy11936 360 IHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQA 412 (548)
Q Consensus 360 i~L~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 412 (548)
|.|++|+|..|.|||+.|...+......+.+.++.++++++++++++.+.+.+
T Consensus 1 ~el~~~~l~~Y~GnY~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~~ 53 (85)
T PF12848_consen 1 IELENGKLTEYPGNYSDYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFRAK 53 (85)
T ss_pred CEeECCEeEEeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999998876653
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=81.01 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=31.9
Q ss_pred ccCCCEEEEeCCCCCCCHHH----HHHHHHHHhh-cCCeEEEEecCHHHHH
Q psy11936 308 YIEPTLLLLDEPTNHLDLNA----VIWLDNYLQG-WKKTLLIVSHDQSFLD 353 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s----~~~L~~~L~~-~~~TvIiVSHD~~~l~ 353 (548)
+.+..++|+||...+=++.. ...+.++|.+ .+..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 45677999999998888754 2345566665 5778999999998754
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-07 Score=87.65 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=61.1
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeec-cce-----------ee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGL-HNV-----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~-~n~-----------~~ 527 (548)
+.|+++||+++|++ ..+|++||++. .|+++.|.|| +|||+|||+|..+|++|.|+.+ +++ ++
T Consensus 1 ~mi~i~~l~K~fg~-~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGD-KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCC-eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 36899999999975 68999999996 9999999999 5999999999999999999874 344 36
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+++-|+.-|.
T Consensus 80 GmVFQ~fnLF 89 (240)
T COG1126 80 GMVFQQFNLF 89 (240)
T ss_pred Ceeccccccc
Confidence 6777776553
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-07 Score=88.81 Aligned_cols=74 Identities=19% Similarity=0.071 Sum_probs=65.6
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCeeecc--------------ce
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPILGLH--------------NV 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------n~ 525 (548)
.+|++++|++.|++++.+++||||+. .|+-+.|.|| +|||+|+|.|...|+.|+|...- --
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57999999999987789999999996 9999999998 59999999999999999876543 45
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.++|+.|.|-||.
T Consensus 82 ~iGmIfQ~~nLv~ 94 (258)
T COG3638 82 DIGMIFQQFNLVP 94 (258)
T ss_pred hceeEeccCCccc
Confidence 7999999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-07 Score=87.66 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred cEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------------
Q psy11936 466 ILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~------------- 525 (548)
+|+++||+++|++. +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+.. +++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 37899999999643 46999999985 89999999996 899999999999999987553 333
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.++|+.|+|.+..
T Consensus 81 ~i~~~~q~~~~~~ 93 (216)
T TIGR00960 81 HIGMVFQDHRLLS 93 (216)
T ss_pred hceEEecCccccc
Confidence 4899999987653
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=94.35 Aligned_cols=48 Identities=31% Similarity=0.340 Sum_probs=39.7
Q ss_pred HHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 272 ARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 272 ~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
+...|..+|+.. .....+..+||| +|+||| +.+||+..+..|..+|.+
T Consensus 244 a~~~l~~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 445577788864 456778899999 999999 899999999999999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-06 Score=101.72 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=32.8
Q ss_pred eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEe
Q psy11936 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYC 208 (548)
Q Consensus 165 vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~ 208 (548)
+++....+.++||+|++|+|||||++++++. +.....+.+.+.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~-l~~~F~g~vfv~ 242 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR-LSRQFQSSVFID 242 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHH-HhhcCCeEEEee
Confidence 4677788999999999999999999999764 223334555543
|
syringae 6; Provisional |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-07 Score=88.36 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=59.6
Q ss_pred EEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------
Q psy11936 467 LGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------ 525 (548)
Q Consensus 467 L~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------ 525 (548)
|++++|+++|++. +++|+++||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999752 57999999985 89999999996 89999999999999998764 3332
Q ss_pred --eeeeeeccceeee
Q psy11936 526 --TFAYEGMKPLLVD 538 (548)
Q Consensus 526 --~~~y~~~~~~~~~ 538 (548)
.++|+.|.|.+.+
T Consensus 81 ~~~i~~~~q~~~~~~ 95 (218)
T cd03255 81 RRHIGFVFQSFNLLP 95 (218)
T ss_pred hhcEEEEeeccccCC
Confidence 4899999986653
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.2e-07 Score=92.40 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=62.0
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc---------eeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN---------VTFA 528 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n---------~~~~ 528 (548)
+.+|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +++ -.++
T Consensus 2 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred CcEEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 357999999999975 67999999985 89999999996 89999999999999998764 333 3589
Q ss_pred eeeccceee
Q psy11936 529 YEGMKPLLV 537 (548)
Q Consensus 529 y~~~~~~~~ 537 (548)
|+.|+|.+.
T Consensus 81 ~v~q~~~~~ 89 (303)
T TIGR01288 81 VVPQFDNLD 89 (303)
T ss_pred EEeccccCC
Confidence 999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.9e-07 Score=88.29 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=62.2
Q ss_pred CCcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cc----------
Q psy11936 464 PPILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HN---------- 524 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n---------- 524 (548)
+++|++++|+++|++. +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.. ++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 3589999999999642 47999999985 89999999996 899999999999999987653 23
Q ss_pred ----eeeeeeeccceeee
Q psy11936 525 ----VTFAYEGMKPLLVD 538 (548)
Q Consensus 525 ----~~~~y~~~~~~~~~ 538 (548)
-.++|+.|+|.+.+
T Consensus 83 ~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred HHHhccEEEEecCcccCC
Confidence 24899999987653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-07 Score=87.50 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=60.1
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------eeeeeeccc
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------TFAYEGMKP 534 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------~~~y~~~~~ 534 (548)
|+++++++.|++ +++|+|+||+. .|+.++|.||| |||+++|+|.++|++|+|+. ++++ .++|+.|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 478999999965 67999999984 99999999986 89999999999999998765 4454 589999998
Q ss_pred eeee
Q psy11936 535 LLVD 538 (548)
Q Consensus 535 ~~~~ 538 (548)
.+.+
T Consensus 80 ~~~~ 83 (210)
T cd03269 80 GLYP 83 (210)
T ss_pred cCCc
Confidence 6543
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.4e-07 Score=87.67 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=60.3
Q ss_pred EEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----eeeeeec
Q psy11936 467 LGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----TFAYEGM 532 (548)
Q Consensus 467 L~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----~~~y~~~ 532 (548)
|+++||+++|++. +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .++|+.|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4789999999642 57999999985 99999999996 89999999999999998765 4443 5899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
.|.+++
T Consensus 81 ~~~~~~ 86 (220)
T cd03293 81 QDALLP 86 (220)
T ss_pred cccccc
Confidence 987654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-07 Score=81.62 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=58.5
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeec
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGM 532 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~ 532 (548)
|++++++++|++ .++|+++||+. .|+.+.|.||| |||+++|+|.++|++|.|+...+..++|+.|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 478999999975 47999999985 99999999996 8999999999999999999988888999876
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.7e-07 Score=100.32 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=64.3
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC----ccceeeccCCCCCCCCCCee-ecccee----------ee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP----REYVVKFSFPDPPPLQPPIL-GLHNVT----------FA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~----~~~~~~~~~~~~~~~~~~~~-~~~n~~----------~~ 528 (548)
.-++++||+|+|++++++|+|+||+. .|++++|.|+ +|||+|+|+|..+|++|.|+ .++|+. |+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35899999999976568999999996 9999999998 59999999999999999864 455554 89
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+++
T Consensus 419 ~v~Q~~~lF~ 428 (592)
T PRK10790 419 MVQQDPVVLA 428 (592)
T ss_pred EEccCCcccc
Confidence 9999999885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.8e-07 Score=86.92 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=59.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-------------e
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------------T 526 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------------~ 526 (548)
.|+++||++.|++++.+|+|+||+. .|+.+.|.||| |||+++|+|.++|++|.|+.. +++ .
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 3789999999943467999999985 99999999996 899999999999999987653 333 4
Q ss_pred eeeeecccee
Q psy11936 527 FAYEGMKPLL 536 (548)
Q Consensus 527 ~~y~~~~~~~ 536 (548)
++|+.|+|.+
T Consensus 81 i~~~~q~~~~ 90 (222)
T PRK10908 81 IGMIFQDHHL 90 (222)
T ss_pred eEEEecCccc
Confidence 7999999865
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-06 Score=90.39 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=34.5
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+++++ |+|.+|+++||+|+||||||||+++|+|.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 45689999 99999999999999999999999999984
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.4e-07 Score=86.92 Aligned_cols=70 Identities=10% Similarity=-0.037 Sum_probs=59.4
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce---------eeeeee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV---------TFAYEG 531 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~---------~~~y~~ 531 (548)
|+++|++++|++ +++|+|+||+. .|+.++|.||| |||+|+|+|.++|++|.|+... ++ +++|+.
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 578999999965 67999999985 89999999996 8999999999999999887543 22 589999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|.|.+.
T Consensus 80 q~~~~~ 85 (220)
T cd03265 80 QDLSVD 85 (220)
T ss_pred CCcccc
Confidence 998654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.6e-07 Score=86.60 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=59.7
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------ee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------------TF 527 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------------~~ 527 (548)
|++++|++.|++.+++|+|+||+. .|+.+.|.||| |||+++|.|.++|++|.|+. ++++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999965467999999985 99999999986 89999999999999998754 3433 48
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|.|.+..
T Consensus 81 ~~v~q~~~~~~ 91 (214)
T cd03292 81 GVVFQDFRLLP 91 (214)
T ss_pred EEEecCchhcc
Confidence 99999986553
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=87.59 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=60.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-c--------eeeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-N--------VTFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n--------~~~~y~~ 531 (548)
.|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+... + -.++|+.
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4789999999975 67999999985 99999999996 8999999999999999876532 2 2589999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.+.
T Consensus 81 q~~~~~ 86 (239)
T cd03296 81 QHYALF 86 (239)
T ss_pred cCCccc
Confidence 998665
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-07 Score=86.69 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred EEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------eeeee
Q psy11936 467 LGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV---------TFAYE 530 (548)
Q Consensus 467 L~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~y~ 530 (548)
|++++|++.|++. +++|+|+||+. .|+.++|.||| |||+|+|.|.++|++|.|+. ++++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999643 57999999985 89999999996 89999999999999998754 3443 38999
Q ss_pred eccceee
Q psy11936 531 GMKPLLV 537 (548)
Q Consensus 531 ~~~~~~~ 537 (548)
.|.|.+.
T Consensus 81 ~q~~~~~ 87 (220)
T cd03263 81 PQFDALF 87 (220)
T ss_pred cCcCCcc
Confidence 9998665
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=86.77 Aligned_cols=74 Identities=8% Similarity=-0.064 Sum_probs=61.5
Q ss_pred CcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc-----------
Q psy11936 465 PILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN----------- 524 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n----------- 524 (548)
++|+++||+++|++. .++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. +++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 589999999999753 25999999985 99999999996 89999999999999998753 322
Q ss_pred ---eeeeeeeccceeee
Q psy11936 525 ---VTFAYEGMKPLLVD 538 (548)
Q Consensus 525 ---~~~~y~~~~~~~~~ 538 (548)
-.++|+.|.|.+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIP 101 (228)
T ss_pred HHhheEEEEEcccccCC
Confidence 25899999986643
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.7e-06 Score=95.97 Aligned_cols=46 Identities=28% Similarity=0.433 Sum_probs=36.8
Q ss_pred ccCCCEEEEeCC---CCCCCHHHHHH-HHHHHhh-cCCeEEEEecCHHHHH
Q psy11936 308 YIEPTLLLLDEP---TNHLDLNAVIW-LDNYLQG-WKKTLLIVSHDQSFLD 353 (548)
Q Consensus 308 ~~~P~lLLLDEP---Tn~LD~~s~~~-L~~~L~~-~~~TvIiVSHD~~~l~ 353 (548)
+..+.|+||||+ |+.+|-.++.| +.++|.+ .+..+|++||..++..
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 568899999999 88888777554 7777777 6778999999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 548 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-28 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 9e-27 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-26 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 9e-12 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 8e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-09 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-07 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-05 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 8e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-04 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 1e-74
Identities = 89/409 (21%), Positives = 151/409 (36%), Gaps = 45/409 (11%)
Query: 34 KDLLDEILSAPSKETPKVDDIPVPASDEVPNKEEVEPEVAAPPQVKEDTKASKDKKLTHK 93
+ + + E D+ ++ V+ D
Sbjct: 323 RRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382
Query: 94 EKKKMKKDMEFQKQVETITKKGGQGHSELGDNFTISQMEKTGGQLAALENAVDIKVENFS 153
++ + +K + + + + + D+ FS
Sbjct: 383 IDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFS 442
Query: 154 ISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYCEQ 210
++ L L + RRYG+ GPNG GK+TL+R IA+ + +Y E
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEH 502
Query: 211 EVVA--DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSA 268
++ D + ++ V ++ V E
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKE------------------------------------ 526
Query: 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328
+ L GF+ M SGGW+M+++LARA+ +LLLDEPTNHLD V
Sbjct: 527 --AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQ-KSKE 387
WL NYL T + +SHD FLDNVC II+ + KL YKGN++ F K K+ E
Sbjct: 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYE 644
Query: 388 RMKEFEKQEKRIKELKAHG-QSKKQAEKKTKEVLTRKQEKNKSKLQKAD 435
+ + + K + G ++K++A K + + +K ++ +
Sbjct: 645 ELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDIN 693
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 7e-43
Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+L + ++ + SV A + R EL+ +K+ ++
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKM---------VAEVDMKEALASGQ 871
Query: 264 GADSAEPRARRILAGLGFS-RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ LG + + SGG ++++ LA + P L++LDEPTN+
Sbjct: 872 FRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 323 LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
LD +++ L L+ ++ ++I++H F N+ E+ + ++ N+
Sbjct: 932 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 147 IKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLK 198
+KV N G + N + R ++GPNG GK+TL+ + ++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 199 VPPNIDILYCEQEVVA-DDLTAVESVLK--ADVKRTELLAECAKLEAADFSSEQQEQLKE 255
N I Y +Q A + ++ + +T E + E + +
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 256 IYE 258
I++
Sbjct: 792 IFK 794
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 39/289 (13%)
Query: 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------SRDLKVPPNI 203
E+ N + ++ +G G+VGPNG GKTT ++ +A + +
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 204 DILYCEQEVVADDLTAV-ESVLKADVK--RTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
I + + + ++ VK +LL + K +++E+ +++
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK-----------GKVRELLKKV 203
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G + ++ L + DR SGG RV++A AL + DEP+
Sbjct: 204 DEVG------KFEEVVKELELENVL-DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256
Query: 321 NHLDLNA---VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377
++LD+ V + L K +L+V HD + LD + + I +Y G Y +F
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH-----VVYGEPGVYGIF 311
Query: 378 KKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEK 426
++ R E + +K+ + + K E + ++E
Sbjct: 312 ----SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERET 356
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 141 LENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK-- 198
+E ++ G+ I G G+VGPNG GKTT ++ +A +
Sbjct: 352 VERETLVEYPRLVKD-YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA-GVEEPT 409
Query: 199 ---VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKE 255
V ++ + Y Q + A+ V ELL++ ++++ +S
Sbjct: 410 EGKVEWDLTVAYKPQYIKAEYEGTVY----------ELLSK---IDSSKLNSNF------ 450
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
+L LG + DR ++ SGG RV++A L + + L
Sbjct: 451 ---------------YKTELLKPLGIID-LYDRNVEDLSGGELQRVAIAATLLRDADIYL 494
Query: 316 LDEPTNHLD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
LDEP+ +LD L + + ++ +KT L+V HD +D V + +I +
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 34/220 (15%)
Query: 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207
K L V+ N G G++GPNG GKTT R + ++ +
Sbjct: 271 KWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNGIGKTTFARILV-GEIT-ADEGSVTP 327
Query: 208 CEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS 267
+Q + + ++ Q+ L+ ++ + +
Sbjct: 328 EKQILSYKP----------------------QRIFPNYDGTVQQYLENASKDALSTSSWF 365
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN- 326
E + L R + + + SGG ++ +A L E L +LD+P+++LD+
Sbjct: 366 FE----EVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Query: 327 -AVIW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
++ + + K I+ HD S D + + II
Sbjct: 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 3e-20
Identities = 55/281 (19%), Positives = 106/281 (37%), Gaps = 29/281 (10%)
Query: 162 FVNANLLIAN-GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220
F L G++G NG GKTT+L+ +A ++ PN +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG---EIIPNFGDP--------NSKVGK 62
Query: 221 ESVLKADVKRTELLAECAKLEAADFSS----EQQEQLKEIYEELKAIGADSAEPRAR--R 274
+ VLK + E+ +L + + + E + + + R +
Sbjct: 63 DEVLK-RFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDE 121
Query: 275 ILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY 334
+ L + ++ SGG R+ +A +L E + + D+P+++LD+ + +
Sbjct: 122 VKELLNMTNLW-NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 335 LQGWK--KTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEF 392
++ K +++V HD LD + + I +Y Y K YA ++ + F
Sbjct: 181 IRELLKNKYVIVVDHDLIVLDYLTDLIHI-----IYGESSVYGRVSKSYA--ARVGINNF 233
Query: 393 EKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQK 433
K + +K K K+ ++ K K K K K
Sbjct: 234 LKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTK 274
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-22
Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 61/217 (28%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA----------SRDLKV---PPNIDILYCEQ 210
I G G+VGPNG GKTT ++ +A DL V P I Y +
Sbjct: 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY--E 361
Query: 211 EVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP 270
V ELL++ ++
Sbjct: 362 GTVY-----------------ELLSK------------------------IDASKLNSNF 380
Query: 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LN 326
+L LG DR SGG RV++A L + + LLDEP+ +LD L
Sbjct: 381 YKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 439
Query: 327 AVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ + ++ +KT L+V HD +D V + ++ +
Sbjct: 440 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE 209
E+ N + ++ G G+VGPNG GK+T ++ +A ++ PN
Sbjct: 25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG---QLIPN------- 74
Query: 210 QEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ------LKEIYEELKAI 263
+ D + + V++ + EL KL+ + + Q + ++ +
Sbjct: 75 ---LCGDNDSWDGVIR-AFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL 130
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
+ ++ L + +R ++ SGG RV++A AL T DEP+++L
Sbjct: 131 KKADETGKLEEVVKALELENVL-EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 324 DLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEII 360
D+ + ++ K++L+V HD + LD + + I
Sbjct: 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 5e-22
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 61/252 (24%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS------------ 194
I+++ +G + + IA G ++ L G NG GKTTLL + +
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 195 -RDL-KVPPNIDIL-----YCEQEVVAD---DLTAVESVLKADVKRTELLAECAKLEAAD 244
+ KV + + + + ++ ++ V+ K + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD-------- 133
Query: 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF---SGGWRMRV 301
E + A ++L +G M +A + S G + RV
Sbjct: 134 IDDEIRN-------------------EAHQLLKLVG----MSAKAQQYIGYLSTGEKQRV 170
Query: 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-----QGWKKTLLIVSHDQSFLDNVC 356
+ARAL +P +L+LDEP LD A L + L ++ V+H +
Sbjct: 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANF 230
Query: 357 NEIIHLDQQKLY 368
++I+ L +
Sbjct: 231 SKILLLKDGQSI 242
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 45/234 (19%)
Query: 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA----SRDLKVPPNIDILYCEQEV 212
+G+ + ++ ++G NG GKTTL++ +A + + P +++ Q++
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKI 422
Query: 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA 272
A F +++++ + K G
Sbjct: 423 -----------------------------APKF----PGTVRQLFFK-KIRGQFLNPQFQ 448
Query: 273 RRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD----LNAV 328
++ L + D+ ++ SGG RV++ AL I + L+DEP+ +LD +
Sbjct: 449 TDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507
Query: 329 IWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ--KLYYYKGNYSMFKKM 380
+ ++ KKT IV HD + +++I + K + + S+
Sbjct: 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 33/248 (13%)
Query: 142 ENAVDIK------VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195
+A+ I + + N ++ G+ GLVG NG GK+T L+ +A
Sbjct: 67 FDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG- 125
Query: 196 DLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL-- 253
K PN+ E + + +EL K+ D + + Q
Sbjct: 126 --KQKPNLGRFDDPPEWQ---------EIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVD 174
Query: 254 ---KEIYEELKAIG------ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304
+ I ++ +G + + +R + L + R + SGG R ++
Sbjct: 175 NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL-KRDIEKLSGGELQRFAIG 233
Query: 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIH 361
+ E + + DEP+++LD+ + ++ K ++ V HD S LD + + +
Sbjct: 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293
Query: 362 LDQQKLYY 369
+ Y
Sbjct: 294 IYGVPSVY 301
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-19
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 50/239 (20%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP---N 202
+ VEN N LF N + G ++G NG GK+TLL + + P
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL-GIHR--PIQGK 61
Query: 203 IDIL----YCEQEVVAD-DLTAVESVL---KADVKRTELLAECAKLEAADFSSEQQEQLK 254
I++ + Q + + ++ VL + F+ + +
Sbjct: 62 IEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT--------------FAKPKSHDYQ 107
Query: 255 EIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
+ L + LA R + SGG R + +ARA+ E L+
Sbjct: 108 VAMQALDYLNLTH--------LA---------KREFTSLSGGQRQLILIARAIASECKLI 150
Query: 315 LLDEPTNHLDLN---AVI-WLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369
LLDEPT+ LDL V+ L + Q T++ +H + + + N+ + L++Q +
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 65/241 (26%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIA--------- 193
I+++N I+ G + NL + NG + ++GPNG GKTTLLR I+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 194 ---SRDL-KVPPNIDI------LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAA 243
++ K+ I Y V D + E + D
Sbjct: 61 FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL------------- 107
Query: 244 DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303
+L L + R S G + V
Sbjct: 108 ----------------------------FLEMLKALKLGEEILRRKLYKLSAGQSVLVRT 139
Query: 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363
+ AL +P ++ LDEP ++D + Y++ + K ++V+H+ L+ +
Sbjct: 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFL 199
Query: 364 Q 364
Sbjct: 200 V 200
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 47/197 (23%), Positives = 64/197 (32%), Gaps = 38/197 (19%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+ + G LVGPNG GK+TLL +A I + Q +
Sbjct: 20 SGEVRAGEILHLVGPNGAGKSTLLARMA-GMT--SGKGSIQFAGQPL------------- 63
Query: 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIY--EELKAIGADSAEPRA--RRILAGLGF 281
T+L A L QQ+ + + L
Sbjct: 64 EAWSATKLALHRAYLS-------QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 282 SRAMQDRATKNFSGGWRMRVSLARAL-------YIEPTLLLLDEPTNHLDLNAVIWLDNY 334
R+T SGG RV LA + LLLLDEP N LD+ LD
Sbjct: 117 D-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 335 LQGWKK---TLLIVSHD 348
L + +++ SHD
Sbjct: 176 LSALSQQGLAIVMSSHD 192
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 5e-18
Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 52/224 (23%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLKVPPNI---DILY 207
+ I G +GL+GPNG GKTT LR + +++ P+ I Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 208 CEQEVVAD-DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+E A ++ +E + A +
Sbjct: 93 LPEEAGAYRNMQGIEYL-------------------------------RFVAGFYASSSS 121
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
E R G +S G ++ +ARAL + P L +LDEPT+ LD+
Sbjct: 122 EIEEMVERATEIAGLGEK-IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 327 AVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ L+ T+L+ SH+ ++ +C+ I + +
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 1e-14
Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 72/229 (31%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLR-------------HIASRDLK--------VPPN 202
+ I G GPNG GKTTLL+ + +P
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
I I+ ++ + + + L
Sbjct: 87 I-IVP-------RKISVEDYL-------------------------------KAVASLY- 106
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
G + L + + S G RV LA L + + +LD+P
Sbjct: 107 -GVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163
Query: 323 LDLNAV--IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+D ++ + + L+ ++ + S C+ +L +
Sbjct: 164 IDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLHKYST 208
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 47/226 (20%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVA-------- 214
++ + G ++GPNG GK+TL+ I + + + +++
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEPAELYH 81
Query: 215 -------------DDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELK 261
++T +E++L ++ E + L + + ++ +E+ E
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGE-----SPLNSLFYKKWIPKE-EEMVE--- 132
Query: 262 AIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT- 320
+A +IL L S +A SGG V + RAL P ++++DEP
Sbjct: 133 ---------KAFKILEFLKLSHLYDRKA-GELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
Query: 321 --NHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ + L+ T LI+ H + N + + +
Sbjct: 183 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-12
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
L+ + + R R + LG + + DR SGG R RV+LARAL I+P LLLLDEP
Sbjct: 95 LRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 320 TNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
+ +DL L + +L V+HD
Sbjct: 154 LSAVDLK----TKGVLMEELRFVQREFDVPILHVTHDL 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 5e-12
Identities = 90/631 (14%), Positives = 192/631 (30%), Gaps = 191/631 (30%)
Query: 3 DAPTHIEEDKKQEIKPVKEEKISKKSKKKEKKDLLDEILSAPSKETPKVDDIPVPASDEV 62
D T + + ++I V E+ K+ +D+ ILS +E +D I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEE---IDHII-----MS 57
Query: 63 PNKEEVEPEVAAPPQVKE--DTKASKDKKLTHK-EKKKMKKDMEF--------QKQVETI 111
+ T SK +++ K ++ ++ + +F Q+Q +
Sbjct: 58 KDAVS---------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 112 TKKGGQGHSEL-GDN-----FTISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNA 165
T+ + L DN + +S+++ L A+ +L
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQP----YLKLRQAL-------------LELRPAK 151
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---PPN----IDILYCEQEVVADDLT 218
N+LI G++ G GKT + KV +++ C
Sbjct: 152 NVLI-----DGVL---GSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSP------- 195
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRA------ 272
E+VL+ +++ + +D SS + ++ I EL+ +
Sbjct: 196 --ETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 273 ---RRILAGLGFS-RAM---QDRATKNF-SGGWRMRVSL---ARALYIEPTLLLL----- 316
+ S + + + + +F S +SL + L + LL
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 317 ----DEPTNHLDLN----AVIW---------LDNYLQ--GWKKTLLIVSHDQSFLDNVCN 357
D P L N ++I DN+ K T +I +S L+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNVLEP 368
Query: 358 EIIHLDQQKLYYYKGNYSMFKK----------MYAQKSKERMKEFEKQEKRIKELKAHGQ 407
+ +K++ S+F + + + +L +
Sbjct: 369 A----EYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIK-----SDVMVVVNKLHKYSL 416
Query: 408 SKKQAEKKTKEV-----LTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPL 462
+KQ ++ T + + + +N+ L + ++ Y + +F +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVDH---YNIPKTFDSDDLI 465
Query: 463 QPPI-------LGLHNVTFAYEGMKPLLMSKADEDQGPTELIQKPREYVVKFSFPDPPPL 515
P + +G H + + + T + + F F L
Sbjct: 466 PPYLDQYFYSHIGHH-------------LKNIEHPERMTLF---RMVF-LDFRF-----L 503
Query: 516 QPPILGLHNVTFAYEGMKPLLVDVRKPQKAI 546
+ I A + L ++ + I
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 29/292 (9%)
Query: 83 KASKDKKLTHKEKKKMKKDMEFQK--QVETITKKGGQGHSELGDNFTISQMEKTGGQLAA 140
K K + T + D+ F+K IT++ +G+S + + +
Sbjct: 54 KDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTE 113
Query: 141 LENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP 200
+ + F ++F+NA + L +
Sbjct: 114 PSSKA---ISAFMEKLIPYNIFLNAIYIRQGQIDAILESD--------------EAREKV 156
Query: 201 PNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEEL 260
+ + E L+ ++ + E + + L S+ E EI+ E
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEF 216
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI------EPTLL 314
RA L ++R SGG R+ + LA L + E +LL
Sbjct: 217 TEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 276
Query: 315 LLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLD 363
+LDEPT +LD L ++ + K +++VSHD+ D + +I +
Sbjct: 277 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA-DHVIRIS 327
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 4e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225
+L G ++G +G GK+T LR I L+ P I+ Q + +L +
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNI---NLVRDKDGQL 80
Query: 226 ADVKRTELLAECAKLEAADFSSEQQ----------EQLKEIYEELKAIGADSAEPRARRI 275
+ +L +L F Q E + E ++ + A RA +
Sbjct: 81 KVADKNQLRLLRTRL-TMVF---QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 276 LAGLGFSRAMQDRATKNF----SGGWRMRVSLARALYIEPTLLLLDEPTNHLD------- 324
LA +G + +RA + SGG + RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 137 LAKVG----IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 325 LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
L + L +G T+++V+H+ F +V + +I L Q
Sbjct: 193 LRIMQQLAE--EGK--TMVVVTHEMGFARHVSSHVIFLHQ 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-10
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 259 ELKAIGADSAEPRARRILA--GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLL 316
K + D + R R +L L + +R SGG + RV+LARAL P +LL
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLE---SYANRFPHELSGGQQQRVALARALAPRPQVLLF 169
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
DEP +D + L+ + + T + V+HDQ
Sbjct: 170 DEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVFVTHDQ 206
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 8e-10
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 260 LKAIGADSAEPRAR--RILA--GLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
L +A+ R R +L G+ + R SGG + R +LARAL +P L+L
Sbjct: 105 LGNGKGRTAQERQRIEAMLELTGIS---ELAGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 316 LDEPTNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQ 349
LDEP + LD L ++ + + VSHD+
Sbjct: 162 LDEPFSALDEQ----LRRQIREDMIAALRANGKSAVFVSHDR 199
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 256 IYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315
I++ A+ + RA L + SGG + RV++ARAL P ++L
Sbjct: 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 316 LDEPTNHLDL---NAVIWLDNYL-QGWKKTLLIVSHDQSFLDNVCNEIIHL 362
D+PT LD ++ L L + KT+++V+HD + + II+L
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYL 218
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 260 LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319
++ + R L + DR SGG + RV+LARAL P +LLLDEP
Sbjct: 97 MRMKKIKDPK-RVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154
Query: 320 TNHLDLNAVIWLDNYLQGWKK--------TLLIVSHDQS 350
+ LD + T+L ++HDQ+
Sbjct: 155 LSALDPR----TQENAREMLSVLHKKNKLTVLHITHDQT 189
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309
E EI+ E RA L ++R SGG R+ + LA L +
Sbjct: 15 GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAM 74
Query: 310 ------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDN 354
E +LL+LDEPT +LD L ++ + K +++VSHD+ D
Sbjct: 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 128
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 271 RARRILAGLGFSR-AMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-- 327
++ + +G + +DR SGG + RV++A + EP +L+LDEP LD
Sbjct: 116 LVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 328 -VIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSK 386
++ + + KT++++SHD + N + ++ L++ K + +K +
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
Query: 387 ERMKEFEKQEKRIKE 401
+M + + ++
Sbjct: 236 SKMLVMRRLVLKGED 250
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 146 DIKVENFSIS-AKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHI 192
I+V N S +G L A +L+I G + G G GK+TLL+ +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIV 53
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 72/231 (31%)
Query: 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--------- 216
N+ I G ++GP+G GK+T LR + L+ +I+ + A D
Sbjct: 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNL--LEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 217 -------------LTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+T + ++ A +K ++
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMK------------------------------VRKW 131
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+ AE +A +L +G ++D+A + SGG RV++ARAL +EP ++L DEPT
Sbjct: 132 PREKAEAKAMELLDKVG----LKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187
Query: 321 NHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ LD L+ + L N +G T+++V+H+ F V + ++ +D
Sbjct: 188 SALDPEMVGEVLSVMKQLAN--EG--MTMVVVTHEMGFAREVGDRVLFMDG 234
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 74/332 (22%), Positives = 120/332 (36%), Gaps = 85/332 (25%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTT----LLR---------HIASRDLKVPPNID------ 204
NL + +G+ LVG +G GK+T + R I +D++ I+
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR---TINVRYLRE 464
Query: 205 -ILYCEQEVVADDLTAVESVL--KADVKRTELLAECAKL-EAADFSSEQQEQLKEIYEEL 260
I QE V T E++ + DV + + + K A DF +L ++ L
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGREDVTM-DEIEKAVKEANAYDFIM----KLPHQFDTL 519
Query: 261 KAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320
+G R Q SGG + R+++ARAL P +LLLDE T
Sbjct: 520 --VG-----------------ERGAQ------LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 321 NHLD-------LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ--------- 364
+ LD A LD +G +T ++++H S + N + I D
Sbjct: 555 SALDTESEAVVQAA---LDKAREG--RTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNH 608
Query: 365 QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQ 424
+L KG Y + + + K + + K + L R++
Sbjct: 609 DELMREKGIYFKLVMT------QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR 662
Query: 425 EKNKSKLQKADEDQGPTELIQKPREYVVKFSF 456
KS D+D+ + E V SF
Sbjct: 663 STRKSICGPHDQDR-KLSTKEALDEDVPPASF 693
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 12/62 (19%)
Query: 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLIV 345
SGG + R+++ARAL +P +LLLDE T+ LD A LD +G +T +++
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA---LDKAREG--RTCIVI 1226
Query: 346 SH 347
+H
Sbjct: 1227 AH 1228
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 268 AEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD--- 324
R L G ++D+ T S G + RV++A L +EP +L+LDEPT LD
Sbjct: 120 IRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 325 ---LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQ 364
+ ++ + T++I +HD + C+ + + +
Sbjct: 179 VSEIMKLL--VEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHI 192
+KVE + + + G N+ I G ++G NG GK+TL ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNF 54
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 5e-08
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRAT---KNFSGGWRMRVSLARALYIEPTLLLLDEP 319
A+ R +L+ LG + D+ + SGG + RV++ARAL EP LL DEP
Sbjct: 112 KPKKEAKERGEYLLSELG----LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 320 TNHLDL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362
T +LD V+ + + ++++V+H++ L + + + +
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEM 212
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 31/148 (20%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV-------IWLDNYLQGW--KKTL 342
SGG R R+SLARA+Y + L LLD P + I+ ++ + KT
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLTEKEIF-ESCVCKLMANKTR 212
Query: 343 LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKEL 402
++V+ L ++I+ L + Y+Y G +S + +F + L
Sbjct: 213 ILVTSKMEHLKK-ADKILILHEGSSYFY-GTFSELQN--------LRPDFSSK------L 256
Query: 403 KAHGQSKKQAEKKTKEVLTRKQEKNKSK 430
+ + ++ +LT + +
Sbjct: 257 MGCDSFDQFSAERRNSILTETLHRFSLE 284
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
N SGG + RVSLARA+Y + L D+P + +D VI L+ KT ++
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN--KTRIL 184
Query: 345 VSHDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKER 388
V+H S+L + II + Q+L G ++ F + YA
Sbjct: 185 VTHSMSYLPQ-VDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHHHH 236
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLI 344
SGG R R+SLARA+Y + L LLD P +LD + + + KT ++
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMAN--KTRIL 185
Query: 345 VSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375
V+ L ++I+ L + Y+ G +S
Sbjct: 186 VTSKMEHLKK-ADKILILHEGSS-YFYGTFS 214
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG------WKKTLLIV 345
S G + + LAR++ + +LLLDEP+ HLD ++ T+++
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV----TYQIIRRTLKQAFADCTVILC 210
Query: 346 SHDQSFLDNV--CNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEK 394
++ + C++ + +++ +LY+Y F + K +
Sbjct: 211 EAR---IEAMLECDQFLVIEENKVRQYDSILELYHYPA--DRFVAGFIGSPKMNFLPVKV 265
Query: 395 QEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTE 442
I +++ + + Q L E P++
Sbjct: 266 TATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSD 313
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVSHDQ 349
SGG R R+++ARAL P +L+ DE T+ LD VI + +G +T++I++H
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIAHRL 204
Query: 350 SFLDNVCNEIIHLDQ 364
S + N + II +++
Sbjct: 205 STVKN-ADRIIVMEK 218
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+ + SG + RV+LARAL +P+LLLLDEP ++LD
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193
N N+ I NG R+G++GP+G GKTT +R IA
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIA 52
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-05
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 382 AQKSKERMKEF-EKQEKRIKELKAHGQSKKQA--EKKTKEV------LTRKQEKNKSKLQ 432
+ E ++++ E+Q KR++EL A + +Q EK K++ + + EKNK +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 433 KADEDQGPTELIQKPREYVV 452
AD+ Q+P ++
Sbjct: 140 IADK-----AFYQQPDADII 154
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN-------AVIWLDNYLQGWKKTLLIVS 346
SGG R V+LARAL +P LL+LD T+ LD L + +T+L+++
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLIT 214
Query: 347 H 347
Sbjct: 215 Q 215
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLI 344
+ SGG R RV++ARAL + +L+LDE T+ LD A LD + KT+L+
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA---LDELQKN--KTVLV 534
Query: 345 VSH 347
++H
Sbjct: 535 IAH 537
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 260 LKAIGADSAE--PRARRILA--GLGFSRAMQDRATK---NFSGGWRMRVSLARALYIEPT 312
L+ E R +L+ GLG D+ N SGG + RV++ARAL P
Sbjct: 130 LELDNTPKDEVKRRVTELLSLVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPK 183
Query: 313 LLLLDEPTNHLD 324
+LL D+ T+ LD
Sbjct: 184 VLLCDQATSALD 195
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL-------NAVIWLDNYLQGWKKTLLI 344
SGG R R+++ARAL + +L+LDE T+ LD A LD + +T L+
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA---LDELQKN--RTSLV 534
Query: 345 VSH 347
++H
Sbjct: 535 IAH 537
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 209 EQEVVADDLTAVESVLKADVKRTELLAE--CAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ +L + L V+ + + A + +++ E +
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI-------EPTLLLLDEP 319
+ N SGG ++ V+L+ L I ++LDEP
Sbjct: 255 PYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEP 314
Query: 320 TNHLDLNAVIWLDNYLQGWKKT--LLIVSHDQSFLD 353
T +LD N L + K ++I++H + D
Sbjct: 315 TVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED 350
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 25/123 (20%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG + RV++AR + P ++LLDE T+ LD + L +T ++V+
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS---LAKVCAN--RTTIVVA 246
Query: 347 HDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEK 397
H S + N ++I+ + + L G Y+ M+ + + + + +
Sbjct: 247 HRLSTVVN-ADQILVIKDGCIVERGRHEALLSRGGVYA---DMWQLQQGQEETSEDTKPQ 302
Query: 398 RIK 400
++
Sbjct: 303 TME 305
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLD-------LNAVIWLDNYLQGWKKTLLIVS 346
SGG R R+++AR L +P +++ DE T+ LD A +++ + +TL+I++
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA---VEDLRKN--RTLIIIA 211
Query: 347 HDQSFLDNVCNEIIHLDQ---------QKLYYYKGNYSMFKKMYAQKSKER 388
H S + + II L++ + L G Y+ +M+ +S
Sbjct: 212 HRLSTISS-AESIILLNKGKIVEKGTHKDLLKLNGEYA---EMWNMQSGGN 258
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 287 DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
+R SGG + RV++ARAL EP +LLLDEP ++LD
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 248 EQQEQLKEIYEELKAIGADSAEPRARRIL----AGLGFSRAMQDRATKNFSGGWRMRVSL 303
L+ + + KA R G +R + SGG R +S+
Sbjct: 231 FTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISI 290
Query: 304 ARALYIEPTL------LLLDEPTNHLD---LNAVIWLDNYLQGWKKTLLIVSHDQ 349
+ A+ + +DE + LD + + L+ K ++ ++HD+
Sbjct: 291 SLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVI--WLDNYLQGWKKTLLIVSH 347
SGG R R+++ARA P +L+LDE T LD +++ LD+ ++G +T L+++H
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG--RTTLVIAH 196
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN--AVIW--LDNYLQGWKKTLLIVS 346
+NFSGG + R+S+ARAL +P +L+LD+ T+ +D I L Y +G T I++
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG--CTTFIIT 535
Query: 347 HDQ---SFLDNVCNEIIHLDQQKL 367
Q + L ++I+ L + K+
Sbjct: 536 --QKIPTALL--ADKILVLHEGKV 555
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
LK E R +L + + +R SGG R RV++ARA+ +EP +L
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELL-QIE---ELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163
Query: 315 LLDEPTNHLD 324
L+DEP ++LD
Sbjct: 164 LMDEPLSNLD 173
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 260 LKAIGADSAEPRAR-----RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLL 314
L+A E R R L + + DR SGG + RV+LARAL +P +L
Sbjct: 100 LRARRISKDEVEKRVVEIARKL-LID---NLLDRKPTQLSGGQQQRVALARALVKQPKVL 155
Query: 315 LLDEPTNHLD 324
L DEP ++LD
Sbjct: 156 LFDEPLSNLD 165
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.88 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.87 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.81 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.79 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.78 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.78 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.76 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.75 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.75 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.74 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.72 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.72 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.69 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.69 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.65 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.64 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.63 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.59 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.57 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.55 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.55 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.5 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.49 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.43 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.39 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.38 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.37 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.3 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.28 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.26 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.25 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.24 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.21 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.2 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.19 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.18 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.16 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.14 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.14 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.05 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.05 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.04 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.02 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.02 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.98 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.98 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.97 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.96 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.93 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.92 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.92 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.91 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.88 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.83 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.82 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.75 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.74 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.74 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.71 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.62 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.6 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.59 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.56 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.55 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.51 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 98.5 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.44 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 98.43 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.42 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.4 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 98.4 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 98.38 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 98.38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 98.36 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.36 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 98.35 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 98.35 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 98.34 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.33 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 98.32 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.32 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 98.32 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 98.31 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 98.31 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 98.3 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.3 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 98.3 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.29 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 98.28 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.27 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.25 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.24 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 98.23 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.22 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 98.21 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.21 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.2 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.17 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.16 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 98.13 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 98.13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 98.12 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 98.11 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.1 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 98.1 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.08 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 98.08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 98.06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.04 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.04 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.02 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 98.02 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 98.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 98.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.99 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.99 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 97.98 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.97 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.97 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.97 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.93 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.92 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.92 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.91 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.9 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.9 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.88 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.88 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.86 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.86 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.85 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.83 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.83 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.83 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.77 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.74 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.73 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.73 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.71 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.69 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.68 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.63 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.61 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.58 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.57 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.52 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.5 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.5 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.49 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.46 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.36 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.36 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.28 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.27 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.27 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.26 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.25 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.2 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.2 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.2 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.19 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.17 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.11 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.09 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.08 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.07 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.02 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.02 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.99 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.97 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.95 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.94 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.91 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.91 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.9 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.87 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.86 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.86 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.86 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.85 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.84 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.79 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.79 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.77 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.75 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.72 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.7 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.7 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.69 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.64 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.64 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.61 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.61 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.6 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.58 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.5 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.5 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.45 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.44 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.41 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.41 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.37 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.36 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.35 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.3 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.27 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.24 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.22 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.18 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.18 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.18 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.17 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.15 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.15 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.14 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.14 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.13 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.11 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.09 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.06 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.03 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.02 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.97 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.96 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.92 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.9 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.89 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.88 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.81 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.79 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.79 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.79 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.76 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.75 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.73 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.72 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.72 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.71 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.71 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.71 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.7 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.7 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.7 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.7 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.68 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.67 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.64 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.64 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.63 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.63 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.63 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.63 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.62 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.61 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.6 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.6 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.59 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.59 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.59 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.58 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.55 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.54 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.54 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.53 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.51 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.51 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.51 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.51 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.48 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.47 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.45 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.44 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.44 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.44 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.44 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.43 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.43 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.43 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.43 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.42 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.41 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.4 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.4 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.4 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.39 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.37 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.36 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.33 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.3 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.3 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.29 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.29 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.29 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.29 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.28 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.27 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.26 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.19 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.18 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.17 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.17 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.16 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.15 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.14 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.13 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.13 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.13 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.12 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.12 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.11 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.11 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.1 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.1 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.1 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.09 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.08 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.07 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.07 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.07 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.04 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.01 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.01 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.99 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.99 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.94 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.94 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.94 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.92 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.92 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.91 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.9 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.87 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.86 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.84 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.84 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.84 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.84 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.83 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.83 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.82 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.82 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.81 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.8 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.8 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.78 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.77 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.75 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.74 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.74 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.74 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.73 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.72 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.72 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.7 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.7 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.68 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.68 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.67 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.67 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.66 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.63 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.63 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.62 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.61 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.57 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.57 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.57 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.51 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.51 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.46 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.45 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.45 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.42 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.4 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.39 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.36 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 94.35 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.35 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.31 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.31 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.31 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.29 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.28 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.27 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.24 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.23 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.21 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.21 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.16 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.14 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.11 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.11 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=448.20 Aligned_cols=297 Identities=31% Similarity=0.504 Sum_probs=228.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL---KVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~---~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|...|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|..+ ..+....+.|..|+....
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~------- 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGT------- 507 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCC-------
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccccccc-------
Confidence 4777799999999999999999999999999999999999999999996322 111223345555432110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....++.+++.. .... . ..++.++|+.+||.....++++.+|||||||||+
T Consensus 508 ---------------------~~~ltv~e~l~~------~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRva 558 (986)
T 2iw3_A 508 ---------------------HSDTSVLDFVFE------SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA 558 (986)
T ss_dssp ---------------------CTTSBHHHHHHT------TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHH
T ss_pred ---------------------ccCCcHHHHHHH------hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHH
Confidence 001112221110 0001 1 5678889999999756779999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHHHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFKKMYA 382 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~~~~~ 382 (548)
|||||+.+|+||||||||||||+.++.+|.++|.+.++|||+||||++++..+||+|++|++|+++.|.|++++|.....
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~ 638 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP 638 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence 99999999999999999999999999999999998778999999999999999999999999999878899987642110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC--
Q psy11936 383 QKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP-- 460 (548)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~-- 460 (548)
. ... .. .... ....+.||.+.
T Consensus 639 ~------------------~~~--------------------------~~----~l~~---------~~~~~~~p~~~~~ 661 (986)
T 2iw3_A 639 A------------------AKA--------------------------YE----ELSN---------TDLEFKFPEPGYL 661 (986)
T ss_dssp G------------------GGG--------------------------SS----STTT---------CCCCCCCCCCCCC
T ss_pred H------------------HHH--------------------------HH----hhhh---------hhhhccccccccc
Confidence 0 000 00 0000 00112222221
Q ss_pred ----CCCCCcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeee
Q psy11936 461 ----PLQPPILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYE 530 (548)
Q Consensus 461 ----~~~~~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~ 530 (548)
..++++|+++||+|+|++ .+++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.+.|++|+|+
T Consensus 662 ~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv 741 (986)
T 2iw3_A 662 EGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741 (986)
T ss_dssp TTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEE
T ss_pred cccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEee
Confidence 124678999999999975 367999999985 99999999997 89999999999999999999999999999
Q ss_pred eccce
Q psy11936 531 GMKPL 535 (548)
Q Consensus 531 ~~~~~ 535 (548)
+|++.
T Consensus 742 ~Q~~~ 746 (986)
T 2iw3_A 742 KQHAF 746 (986)
T ss_dssp CHHHH
T ss_pred ccchh
Confidence 99974
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=360.00 Aligned_cols=215 Identities=24% Similarity=0.312 Sum_probs=170.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...........
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~- 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNSWQPKALART- 86 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--SCCSSCEEEETTEETTTSCHHHHHHH-
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEECCcCCHHHHhhe-
Confidence 369999999999999999999999999999999999999999999999984 46889999999988754332211111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
..++.+ .....+..++.+++... ...........++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 87 ------i~~v~q---~~~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 87 ------RAVMRQ---YSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp ------EEEECS---CCCCCSCCBHHHHHHGG---GTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHH
T ss_pred ------EEEEec---CCccCCCCCHHHHHHhh---hhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHH
Confidence 111111 01122344555554321 111123445678899999999974 67899999999999999999
Q ss_pred HHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 305 RALYI------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 305 raL~~------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+. +|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~ 232 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTP 232 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 99999 99999999999999999999999988765 35999999999999999999999999999875 555
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 233 ~~ 234 (266)
T 4g1u_C 233 EE 234 (266)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=358.24 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++. .........
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~-~~~~~~~~~-- 98 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--EDFDEGEIIIDGINLK-AKDTNLNKV-- 98 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEESS-STTCCHHHH--
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCEECC-CccccHHHH--
Confidence 59999999999988999999999999999999999999999999999985 4688999999998764 111000000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..+++++. ...+...++.+++.... +...+.. ....++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 99 --~~~i~~v~Q~---~~l~~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 99 --REEVGMVFQR---FNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp --HHHEEEECSS---CCCCTTSCHHHHHHHHH--HHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred --hCcEEEEeCC---CcCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 0011111111 11122346666653211 1111211 2345788999999997 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 246 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE-GKPEDL 246 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 99999999999999999999999999999988765 57999999999999999999999999999865 666554
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=362.51 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++|++ ..+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++...... ....
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I~~~G~~i~~~~~~-~~~~- 82 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILFDNKPIDYSRKG-IMKL- 82 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCCSHHH-HHHH-
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--CCCCCeEEEECCEECCccccc-HHHH-
Confidence 5999999999975 4599999999999999999999999999999999984 468899999999887421111 1000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
....+++++.. ....+..++.+++... ....+. .....++.++|+.+|+. ...++++.+|||||||||+
T Consensus 83 ---~~~ig~v~Q~~--~~~~~~~tv~e~l~~~---~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 83 ---RESIGIVFQDP--DNQLFSASVYQDVSFG---AVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp ---HHSEEEECSSG--GGTCCSSBHHHHHHHH---HHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHH
T ss_pred ---hCcEEEEEcCc--ccccccCcHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHH
Confidence 01111222111 1122345666665432 112221 22356788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~~~~ 231 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNPKEV 231 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999998888654 57999999999999999999999999999875 565543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=349.59 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.++++............
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~- 80 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--DAPTEGKVFLEGKEVDYTNEKELSLLR- 80 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--SCCSEEEEEETTEECCSSCHHHHHHHH-
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCCCCHHHHHHHH-
Confidence 58999999999988999999999999999999999999999999999985 468899999999877433221110000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
.....++++. .......++.+++.... .+..........++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 81 --~~~i~~v~q~---~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 --NRKLGFVFQF---HYLIPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp --HHHEEEECSS---CCCCTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHH
T ss_pred --hCcEEEEecC---cccCCCCCHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHH
Confidence 0011111111 11122346666654321 1111111123457889999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++ .+||+|++|++|+++..
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999988765 67999999999998 79999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=353.80 Aligned_cols=215 Identities=23% Similarity=0.268 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ ..+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++...+.....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEECCEEcccCCHHHHH
Confidence 4789999999963 4699999999999999999999999999999999984 578899999999887543322211
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC---CChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA---DSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.... ...+++++. .......++.+++..... +...+. .....++.++|+.+|+.+...++++.+||||||
T Consensus 79 ~~~~---~~i~~v~Q~---~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 79 KIRR---DKIGFVFQQ---FNLIPLLTALENVELPLI-FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHH---HHEEEECTT---CCCCTTSCHHHHHHHHHH-TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred HHhh---ccEEEEecC---CccCCCCcHHHHHHHHHH-hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 1000 011111111 112233466666542111 000011 123456788999999986445899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++.+ .+||+|++|++|+++..
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999988764 68999999999965 78999999999999865
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=358.06 Aligned_cols=219 Identities=27% Similarity=0.376 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeecc----------C
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVA----------D 215 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~----------~ 215 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEcccccccccccccc
Confidence 59999999999988999999999999999999999999999999999985 46789999999987641 1
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHhCCCChhh-hhcccCC
Q psy11936 216 DLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD--SAEPRARRILAGLGFSRAM-QDRATKN 292 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~L~~lgl~~~~-~~~~~~~ 292 (548)
........ ....+++++. .......++.+++.... +...+.. ....++.++|+.+|+.. . .++++.+
T Consensus 84 ~~~~~~~~----~~~i~~v~Q~---~~l~~~ltv~e~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 153 (262)
T 1b0u_A 84 DKNQLRLL----RTRLTMVFQH---FNLWSHMTVLENVMEAP--IQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVH 153 (262)
T ss_dssp CHHHHHHH----HHHEEEECSS---CCCCTTSCHHHHHHHHH--HHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGG
T ss_pred ChhhHHHH----hcceEEEecC---cccCCCCcHHHHHHhhH--HHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCccc
Confidence 11110000 0111111111 11223346666654311 1111211 23457889999999984 5 7999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988765 6799999999999999999999999999986
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
. |+.+++
T Consensus 234 ~-g~~~~~ 240 (262)
T 1b0u_A 234 E-GDPEQV 240 (262)
T ss_dssp E-ECHHHH
T ss_pred e-CCHHHH
Confidence 5 665554
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=372.59 Aligned_cols=220 Identities=23% Similarity=0.328 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 145 VDIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 145 ~~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
.+|+++||+++|++ ..+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++...+...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECSSCCHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHHHH
Confidence 36999999999964 3699999999999999999999999999999999984 57889999999998865433221
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
... .+..+++++. ...++..++.+++..... +..........++.++|+.+||.. ..++++.+||||||||
T Consensus 101 ~~~----r~~Ig~v~Q~---~~l~~~~TV~env~~~~~-~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 101 TKA----RRQIGMIFQH---FNLLSSRTVFGNVALPLE-LDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHH----HTTEEEECSS---CCCCTTSCHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHH
T ss_pred HHH----hCcEEEEeCC---CccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHH
Confidence 111 0111222221 122334567776643221 111112234567889999999974 6799999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~-g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC-CBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 99999999999999999999999999999999888764 67999999999999999999999999999975 55444
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=373.33 Aligned_cols=214 Identities=24% Similarity=0.319 Sum_probs=171.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++|++..+|+||||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.......
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~~~~~~~~~------ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE------ 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGGG------
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--CCCCCeEEEECCEECCCCCHHH------
Confidence 58999999999999999999999999999999999999999999999985 4788999999998875332110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..++++|. ...++.+++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 75 ---r~ig~VfQ~---~~l~p~ltV~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 ---RGVGMVFQS---YALYPHLSVAENMSFGLK-LAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp ---SCEEEECTT---CCCCTTSCHHHHHTHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CCEEEEecC---CcCCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHH
Confidence 011122211 122335577776643221 11122223456789999999997 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+||||||||++||+..+..+.++|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999998888877654 6899999999999999999999999999998754433
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=351.60 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=169.2
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++|+++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.. ....+.
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~-~~~~~~--- 87 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVE-EPHEVR--- 87 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTT-CHHHHH---
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEECCEECCc-cHHHHh---
Confidence 469999999999988999999999999999999999999999999999985 46889999999887642 111100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+++++. .......++.+++.... .+..........++.++|+.+|+.. ..++++.+|||||||||+||
T Consensus 88 ----~~i~~v~q~---~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 ----KLISYLPEE---AGAYRNMQGIEYLRFVA-GFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp ----TTEEEECTT---CCCCTTSBHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHH
T ss_pred ----hcEEEEcCC---CCCCCCCcHHHHHHHHH-HHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHH
Confidence 011111111 11122346666654321 1111111112356888999999974 67899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 233 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEEL 233 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe-cCHHHH
Confidence 9999999999999999999999999999988765 57999999999999999999999999999864 665554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=373.96 Aligned_cols=214 Identities=23% Similarity=0.271 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc--hhHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD--LTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~--~~~~~~~ 223 (548)
+|+++||+++|++..+|+||||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.... ....
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--~~p~~G~I~i~G~~i~~~~~~~~~~--- 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--EQPDSGEISLSGKTIFSKNTNLPVR--- 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEESSSCBCCGG---
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--CCCCCcEEEECCEECcccccccchh---
Confidence 58999999999999999999999999999999999999999999999985 5788999999998873211 1000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.+..+++++. ...++..++.+++..... ...........++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 79 ----~r~ig~vfQ~---~~l~p~ltV~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 79 ----ERRLGYLVQE---GVLFPHLTVYRNIAYGLG-NGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp ----GSCCEEECTT---CCCCTTSCHHHHHHTTST-TSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred ----hCCEEEEeCC---CcCCCCCCHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 0111122211 122334566665532110 00111122456788999999997 46899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCC
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGN 373 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~ 373 (548)
||||+.+|+||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+++..+.+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999998887776443 4578999999999999999999999999999976433
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=354.99 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.++++++........ ..
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~---~~ 81 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAEL---YH 81 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHH---HH
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCCCCHHHH---Hh
Confidence 59999999999998999999999999999999999999999999999985 46789999999987643221100 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-----------CC--ChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-----------AD--SAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----------~~--~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
...+++++.. ......++.+++..... ....+ .. ....++.++|+.+|+. ...++++.+
T Consensus 82 ---~~i~~v~q~~---~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~ 153 (257)
T 1g6h_A 82 ---YGIVRTFQTP---QPLKEMTVLENLLIGEI-CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGE 153 (257)
T ss_dssp ---HTEEECCCCC---GGGGGSBHHHHHHGGGT-STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGG
T ss_pred ---CCEEEEccCC---ccCCCCcHHHHHHHHHh-hhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchh
Confidence 0011111110 11122345554422100 00001 11 1245788999999997 467899999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765 6799999999999999999999999999986
Q ss_pred EcCCHHH
Q psy11936 370 YKGNYSM 376 (548)
Q Consensus 370 ~~g~y~~ 376 (548)
. |+.++
T Consensus 234 ~-g~~~~ 239 (257)
T 1g6h_A 234 E-GRGEE 239 (257)
T ss_dssp E-EESHH
T ss_pred E-eCHHH
Confidence 5 44444
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=346.92 Aligned_cols=217 Identities=20% Similarity=0.206 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.+++.++......... .
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~---~ 80 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVIN---R 80 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH---H
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEECCEECCCCCHHHHH---h
Confidence 59999999999988899999999999999999999999999999999984 468899999999876432211100 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCC-CChhhhhcccCCCCHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLG-FSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
....++++. .......++.+++.... ...........++.++++.++ +. ...++++.+|||||||||+||
T Consensus 81 ---~~i~~v~q~---~~l~~~ltv~enl~~~~--~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 81 ---MGIALVPEG---RRIFPELTVYENLMMGA--YNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp ---TTEEEECSS---CCCCTTSBHHHHHHGGG--TTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHH
T ss_pred ---CCEEEEecC---CccCCCCcHHHHHHHhh--hcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHH
Confidence 001111111 11122345665553210 000111223456788999994 85 356889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 226 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASEL 226 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999999988765 57999999999999999999999999999864 555543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=364.90 Aligned_cols=216 Identities=25% Similarity=0.318 Sum_probs=170.8
Q ss_pred cccEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 144 AVDIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 144 ~~~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+.+|+++||+++| ++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++......
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~---- 85 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--ERPTKGDVWIGGKRVTDLPPQ---- 85 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTCCGG----
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEECCEECCcCChh----
Confidence 4579999999999 888899999999999999999999999999999999985 478899999999876432110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.+..+++++. ...+...++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||+
T Consensus 86 -----~r~ig~v~Q~---~~l~~~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRva 155 (355)
T 1z47_A 86 -----KRNVGLVFQN---YALFQHMTVYDNVSFGLR-EKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVA 155 (355)
T ss_dssp -----GSSEEEECGG---GCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHH
T ss_pred -----hCcEEEEecC---cccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHH
Confidence 0111122211 122334567776643211 11111122356788999999997 4679999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.. |+.++
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 232 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF-GTPEE 232 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999999888887654 68999999999999999999999999999875 55443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=353.69 Aligned_cols=221 Identities=22% Similarity=0.219 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec--cCchhHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV--ADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~--~~~~~~~~~ 222 (548)
++|+++||+++|+++.+|+||||+|.+|+++||+||||||||||||+|+|. ..|.+|+|.+.+.++. ......+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~- 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--EPATSGTVNLFGKMPGKVGYSAETVR- 96 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTBCCC---CCHHHHH-
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCeEEEECCEEcccccCCHHHHc-
Confidence 369999999999988999999999999999999999999999999999985 4688999999988764 21111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH---HHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEE---LKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
...+++++..... .....++.+++...... +..........++.++|+.+|+. ...++++.+|||||||
T Consensus 97 ------~~i~~v~Q~~~~~-~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 ------QHIGFVSHSLLEK-FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp ------TTEEEECHHHHTT-SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHH
T ss_pred ------CcEEEEEcCcccc-cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHH
Confidence 1112222221110 01123555555321000 00001112245688999999996 4678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE--EEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL--LIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv--IiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|| |+||||++++..+||+|++|++|+++.. |+.
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~ 247 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ-GAV 247 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE-EEH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 999999999999999999999999999999999998765 5799 9999999999999999999999999864 665
Q ss_pred HHH
Q psy11936 375 SMF 377 (548)
Q Consensus 375 ~~f 377 (548)
+++
T Consensus 248 ~~~ 250 (279)
T 2ihy_A 248 EDI 250 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=346.99 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=163.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|.....|.+|+|.++++++..........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~--- 79 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR--- 79 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH---
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh---
Confidence 58999999999988999999999999999999999999999999999985224578899999998764322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCC-CCHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKN-FSGGWRMRVS 302 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~-LSGGqkqRva 302 (548)
....++++. .......++.+++............ .....++.++|+.+|+.....++++.+ |||||||||+
T Consensus 80 ---~~i~~v~q~---~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 80 ---KGLFLAFQY---PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp ---TTBCCCCCC---CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred ---CcEEEeccC---CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 000111110 0112234555555332211111111 122456788999999964567899999 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCHH
Q psy11936 303 LARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 303 LAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y~ 375 (548)
|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+.+
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT-GGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE-ESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE-eCHH
Confidence 999999999999999999999999999999999875 47999999999999888 599999999999865 5554
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=386.28 Aligned_cols=316 Identities=20% Similarity=0.220 Sum_probs=205.9
Q ss_pred EeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--ccCchhHHHHHHHh
Q psy11936 150 ENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKA 226 (548)
Q Consensus 150 ~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--~~~~~~~~~~~~~~ 226 (548)
+||+++|++. .+|.++| +|.+|+++||+||||||||||||+|+|. ..|.+|.+......+ ...+ ..+......
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl--~~p~~G~~~~~~~~~~~~~~g-~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ--LIPNLCGDNDSWDGVIRAFRG-NELQNYFEK 100 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSHHHHHHHTTT-STHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCCccCcchhhhHHhhCC-ccHHHHHHH
Confidence 4899999886 4899999 9999999999999999999999999985 345555421000000 0000 000000000
Q ss_pred hH-H--HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DV-K--RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~-~--~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.. . ...+..+...........++.+++. .. ....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~-------~~---~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLK-------KA---DETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHH-------HH---CSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHh-------hh---hHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHH
Confidence 00 0 0000000000000000012222211 11 11245788999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE--EEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL--YYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i--~~~~g~y~~f~ 378 (548)
||||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|.. ..+..+++.-.
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~ 249 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH
Confidence 99999999999999999999999999999888765 78999999999999999999999985421 12223332100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.+....... ........ + .....+.++.
T Consensus 250 -------------------~~~~~~~~~------------------------~~~~~~~~-~--------~~~~~~~~~~ 277 (538)
T 1yqt_A 250 -------------------GINEFLRGY------------------------LKDENVRF-R--------PYEIKFTKTG 277 (538)
T ss_dssp -------------------HHHHHHHTE------------------------ETTTTEEC-S--------SSCCCCCCSS
T ss_pred -------------------HHHHHhhhc------------------------cchhhhcc-c--------ccccccccCC
Confidence 000000000 00000000 0 0011122222
Q ss_pred CC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 459 PP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 459 ~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+. ..+.++|++++++++|++ ..|++++|.. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.+|+|+.
T Consensus 278 ~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~ 353 (538)
T 1yqt_A 278 ERVEIERETLVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKP 353 (538)
T ss_dssp GGGSSCCCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEEC
T ss_pred cccccCCCeEEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEe
Confidence 11 135679999999999964 4688888874 89999999997 89999999999999999986 67899999
Q ss_pred cccee
Q psy11936 532 MKPLL 536 (548)
Q Consensus 532 ~~~~~ 536 (548)
|++.+
T Consensus 354 Q~~~~ 358 (538)
T 1yqt_A 354 QYIKA 358 (538)
T ss_dssp SSCCC
T ss_pred cCCcC
Confidence 99854
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=347.83 Aligned_cols=221 Identities=20% Similarity=0.301 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|.....|.+|+|.++++++..........
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~--- 96 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG--- 96 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH---
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh---
Confidence 69999999999988999999999999999999999999999999999985223477899999998764322111100
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-cCC-----CChHHHHHHHHHhCCCChhhhhcccC-CCCHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-IGA-----DSAEPRARRILAGLGFSRAMQDRATK-NFSGGWR 298 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~-----~~~~~~~~~~L~~lgl~~~~~~~~~~-~LSGGqk 298 (548)
....++++. .......++.+++......+.. .+. .....++.++|+.+|+.....++++. +||||||
T Consensus 97 ---~~i~~v~Q~---~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 97 ---EGIFMAFQY---PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp ---HTEEEECSS---CCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred ---CCEEEEccC---ccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 000011110 0111233455554332211211 111 11235688999999997445688887 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhh-cCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNV-CNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~v-adrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+ ||+|++|++|+++.. |+.
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~ 249 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS-GDF 249 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE-ECT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE-cCH
Confidence 9999999999999999999999999999999999999876 47999999999999886 999999999999865 554
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
+.
T Consensus 250 ~~ 251 (267)
T 2zu0_C 250 TL 251 (267)
T ss_dssp TH
T ss_pred HH
Confidence 43
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=364.25 Aligned_cols=214 Identities=27% Similarity=0.327 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~------ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEKDVTELPPKD------ 74 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--CCCCceEEEECCEECCcCCHhH------
Confidence 48999999999988999999999999999999999999999999999985 4688999999998774322110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...+...++.+++..... +..........++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 75 ---r~ig~v~Q~---~~l~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 ---RNVGLVFQN---WALYPHMTVYKNIAFPLE-LRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp ---TTEEEECTT---CCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHH
Confidence 111122111 112234567776643211 111111223467889999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 220 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTPDE 220 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 44443
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.79 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeC--C---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHH
Q psy11936 146 DIKVENFSISAK--G---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~--~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~ 220 (548)
+|+++||+++|+ + +.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++... .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~---~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLYDGERKKGY---EI 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCHH---HH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEECCEECchH---Hh
Confidence 589999999997 4 5799999999999999999999999999999999985 468899999988765310 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh-hhhhcccCCCCHHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR-AMQDRATKNFSGGWRM 299 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqkq 299 (548)
....+++++.. ....+..++.+++...... . ........++.++|+.+|+.. ...++++.+|||||||
T Consensus 77 -------~~~i~~v~q~~--~~~~~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 77 -------RRNIGIAFQYP--EDQFFAERVFDEVAFAVKN-F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp -------GGGEEEECSSG--GGGCCCSSHHHHHHHTTTT-T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred -------hhhEEEEeccc--hhhcCCCcHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 01111222110 0122345666655321100 0 122334677899999999972 3578999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 224 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD-GTRME 224 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE-EEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999999999999988765 57999999999999999999999999999864 55544
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
+
T Consensus 225 ~ 225 (266)
T 2yz2_A 225 F 225 (266)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=389.21 Aligned_cols=316 Identities=20% Similarity=0.231 Sum_probs=206.7
Q ss_pred EeEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee--ccCchhHHHHHHHh
Q psy11936 150 ENFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV--VADDLTAVESVLKA 226 (548)
Q Consensus 150 ~nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i--~~~~~~~~~~~~~~ 226 (548)
+||+++|++. .+|.++| +|.+|+++||+|||||||||||++|+|. ..|..|.+......+ ...+ ..+......
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl--l~p~~G~~~~~~~~~~~~~~G-~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ--LIPNLCEDNDSWDNVIRAFRG-NELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS--SCCCTTTTCCCHHHHHHHTTT-STHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC--CCCCCCccccccchhhheeCC-Eehhhhhhh
Confidence 8999999887 4899999 9999999999999999999999999985 345555521000000 0000 000000000
Q ss_pred hHH-H--HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 227 DVK-R--TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 227 ~~~-~--~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
... . ..+..+........+..++.+++ .. .....++.++|+.+||.. ..++++.+|||||||||+|
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l-------~~---~~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRvaI 239 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELL-------KK---VDEVGKFEEVVKELELEN-VLDRELHQLSGGELQRVAI 239 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHH-------HH---TCCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHh-------hh---hHHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHHHH
Confidence 000 0 00000000000000011232222 11 112345788999999974 6799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEE--EEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY--YYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~--~~~g~y~~f~ 378 (548)
||||+.+|+||||||||||||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...++...
T Consensus 240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~ 319 (607)
T 3bk7_A 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319 (607)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH
Confidence 99999999999999999999999999999888765 789999999999999999999999864221 1222222100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCC
Q psy11936 379 KMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPD 458 (548)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~ 458 (548)
.+....... ........ ......+.++.
T Consensus 320 -------------------~i~~~~~~~------------------------~~~~~~~~---------~~~~~~~~~~~ 347 (607)
T 3bk7_A 320 -------------------GINEFLQGY------------------------LKDENVRF---------RPYEIRFTKLS 347 (607)
T ss_dssp -------------------HHHHHHHTE------------------------ETTTTEEC---------CSSCCCCCCST
T ss_pred -------------------HHHHHHhhc------------------------chhhhhhc---------cccccccccCC
Confidence 000000000 00000000 00011222222
Q ss_pred CC--CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeee
Q psy11936 459 PP--PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEG 531 (548)
Q Consensus 459 ~~--~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~ 531 (548)
+. ..+.++|++++++++|++ ..|++++|.. .|+.+.|.||| |||+|+|+|.++|++|.|+. +.+++|+.
T Consensus 348 ~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~ 423 (607)
T 3bk7_A 348 ERVDVERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKP 423 (607)
T ss_dssp TSCCCCCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEEC
T ss_pred CcccccCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEe
Confidence 11 235679999999999964 4688888874 89999999997 89999999999999999976 57899999
Q ss_pred cccee
Q psy11936 532 MKPLL 536 (548)
Q Consensus 532 ~~~~~ 536 (548)
|++.+
T Consensus 424 Q~~~~ 428 (607)
T 3bk7_A 424 QYIKA 428 (607)
T ss_dssp SSCCC
T ss_pred cCccC
Confidence 99754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=364.38 Aligned_cols=214 Identities=27% Similarity=0.354 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++...... .
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~--~---- 82 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPK--D---- 82 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG--G----
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCCCChh--h----
Confidence 59999999999988899999999999999999999999999999999985 478899999999877432211 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++.. ..+..+++.+++.... .+..........++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 83 ---r~ig~v~Q~~---~l~~~ltv~eni~~~~-~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 ---RNISMVFQSY---AVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp ---GTEEEEEC---------CCCHHHHHHTTC-C--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHH
T ss_pred ---CcEEEEecCc---ccCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHH
Confidence 0111111111 1122345555543210 000011112245788999999997 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+..+..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 228 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSPTE 228 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 55443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=360.31 Aligned_cols=210 Identities=27% Similarity=0.296 Sum_probs=168.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++. +|+++||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.... ...
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~~~g~~i~~~~--~~~---- 71 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLS--PEK---- 71 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSC--HHH----
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--CCCCCcEEEECCEECCCCc--hhh----
Confidence 37899999999888 99999999999999999999999999999999985 4788999999998764311 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..+++++. ...+..+++.+++.... ...+.... .++.++|+.+|+.. ..++++.+|||||||||+|||
T Consensus 72 ---r~ig~v~Q~---~~l~~~ltv~enl~~~~---~~~~~~~~-~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 ---HDIAFVYQN---YSLFPHMNVKKNLEFGM---RMKKIKDP-KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALAR 140 (348)
T ss_dssp ---HTCEEECTT---CCCCTTSCHHHHHHHHH---HHHCCCCH-HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHHH---HHcCCCHH-HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHH
Confidence 111112111 11223457777764322 11122223 78899999999974 679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~~ 214 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV-GKPEE 214 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE-ECHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999876 55443
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=362.65 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc----hhHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD----LTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~----~~~~~ 221 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++.... ....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--CCCCccEEEECCEECccccccccCCHh-
Confidence 48999999999988999999999999999999999999999999999985 4688999999998774300 0000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.+..+++++. ...+..+++.+++..... +..........++.++|+.+|+. ...++++.+|||||||||
T Consensus 80 ------~r~ig~v~Q~---~~l~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 ------DRDIAMVFQS---YALYPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRV 148 (372)
T ss_dssp ------GSSEEEECSC---CCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHH
T ss_pred ------HCCEEEEeCC---CccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHH
Confidence 0011111111 112234567776643211 11111122346788999999997 467999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCHHH
Confidence 9999999999999999999999999999888887654 68999999999999999999999999999876 55443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=365.54 Aligned_cols=212 Identities=27% Similarity=0.306 Sum_probs=167.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++..+|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.++++++...... .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~--~---- 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIPPK--Y---- 74 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGG--G----
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--CCCCccEEEECCEECCCCChh--h----
Confidence 48999999999988999999999999999999999999999999999985 478899999999877432211 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
+..+++++. ...+...++.+++... +...+. .....++.++|+.+|+. ...++++.+|||||||||+|
T Consensus 75 ---r~ig~v~Q~---~~l~~~ltv~eni~~~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 75 ---REVGMVFQN---YALYPHMTVFENIAFP---LRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp ---TTEEEECSS---CCCCTTSCHHHHHHGG---GSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred ---CcEEEEecC---cccCCCCCHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 111111111 1122344666655321 100011 11235788999999997 46799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~~ 220 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTPDE 220 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 99999999999999999999999999888888654 68999999999999999999999999999876 55443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=366.48 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCce--eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc---hhHH
Q psy11936 146 DIKVENFSISAKGND--LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD---LTAV 220 (548)
Q Consensus 146 ~I~l~nls~~y~~~~--iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~---~~~~ 220 (548)
+|+++||+++|++.. +|+|+||+|.+|++++|+||||||||||||+|+|. ..|.+|+|.+.++++.... ....
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCEECcccccccCChh
Confidence 589999999998888 99999999999999999999999999999999985 4788999999998774310 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 221 ESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
. +..+++++. ...+...++.+++... +...+. .....++.++|+.+|+. ...++++.+||||||
T Consensus 81 ~-------r~ig~v~Q~---~~l~~~ltv~eni~~~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~ 146 (353)
T 1oxx_K 81 D-------RKIGMVFQT---WALYPNLTAFENIAFP---LTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQ 146 (353)
T ss_dssp G-------SCEEEEETT---SCCCTTSCHHHHHHGG---GTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHH
T ss_pred h-------CCEEEEeCC---CccCCCCCHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHH
Confidence 0 011111111 1122345666655321 111111 12346788999999997 467999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|++|+++.. |+.
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 9999999999999999999999999999998888887654 68999999999999999999999999999876 554
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 226 ~~ 227 (353)
T 1oxx_K 226 ED 227 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=339.81 Aligned_cols=196 Identities=26% Similarity=0.316 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE------EeceeeccCchh
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL------YCEQEVVADDLT 218 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~------~~~q~i~~~~~~ 218 (548)
+|+++||+++|+ ++.+|+|+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|. |..|+....
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~~~i~~v~q~~~~~--- 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIEVYQSIGFVPQFFSSP--- 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--SCCSEEEEEECSCEEEECSCCCCS---
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEEeccEEEEcCCCccC---
Confidence 589999999998 88999999999999999999999999999999999985 467778764 333332111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-----CCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-----ADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
+..++.+++.... ....+ ......++.++|+.+|+.+ ..++++.+|
T Consensus 79 --------------------------~~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 129 (253)
T 2nq2_C 79 --------------------------FAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSL 129 (253)
T ss_dssp --------------------------SCCBHHHHHHGGG--GGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGS
T ss_pred --------------------------CCCCHHHHHHHhh--hhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhC
Confidence 1112222221100 00000 0112356788999999974 678999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
||||||||+|||||+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||+|++|++|+ +.
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999999999999988765 6799999999999999999999999999 54
Q ss_pred EcCCHHHH
Q psy11936 370 YKGNYSMF 377 (548)
Q Consensus 370 ~~g~y~~f 377 (548)
.|+.+++
T Consensus 209 -~g~~~~~ 215 (253)
T 2nq2_C 209 -FGETRNI 215 (253)
T ss_dssp -EEEHHHH
T ss_pred -cCCHHHH
Confidence 4665543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=343.11 Aligned_cols=210 Identities=23% Similarity=0.259 Sum_probs=161.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++|++ +|+|+||+|++ +++||+|||||||||||++|+|. ..|.+|+|.++++++..... ..
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~--~~---- 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPP--ER---- 69 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCT--TT----
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCEECCcCch--hh----
Confidence 3789999999976 59999999999 99999999999999999999985 46889999999887632110 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+++++. .......++.+++.... ...+......++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 70 ---~~i~~v~q~---~~l~~~ltv~enl~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 139 (240)
T 2onk_A 70 ---RGIGFVPQD---YALFPHLSVYRNIAYGL---RNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALAR 139 (240)
T ss_dssp ---SCCBCCCSS---CCCCTTSCHHHHHHTTC---TTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHH
T ss_pred ---CcEEEEcCC---CccCCCCcHHHHHHHHH---HHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHH
Confidence 011111111 01112335555442110 00000112456889999999974 578999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+++
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 214 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLKEL 214 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999988764 67999999999999999999999999999864 666554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=341.24 Aligned_cols=206 Identities=25% Similarity=0.267 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCC----ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKG----NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~----~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|++ +.+|+++||+|. |+++||+|||||||||||++|+|. . |.+|+|.+.++++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--~-p~~G~I~~~g~~~~~~--~~-- 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--L-PYSGNIFINGMEVRKI--RN-- 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--S-CCEEEEEETTEEGGGC--SC--
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--C-CCCcEEEECCEECcch--HH--
Confidence 3789999999987 789999999999 999999999999999999999984 4 8899999988765321 00
Q ss_pred HHHHhhHHHHH-HHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHH
Q psy11936 222 SVLKADVKRTE-LLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMR 300 (548)
Q Consensus 222 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqR 300 (548)
.+... ++++.. .. ..++.+++.... .+ . .....++.++|+.+|+.....++++.+||||||||
T Consensus 73 ------~~~i~~~v~Q~~----~l-~~tv~enl~~~~-~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqR 136 (263)
T 2pjz_A 73 ------YIRYSTNLPEAY----EI-GVTVNDIVYLYE-EL---K-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVL 136 (263)
T ss_dssp ------CTTEEECCGGGS----CT-TSBHHHHHHHHH-HH---T-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHH
T ss_pred ------hhheEEEeCCCC----cc-CCcHHHHHHHhh-hh---c-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 00111 122111 11 345555553211 11 1 23456788999999997235789999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcC-EEEEEeCCEEEEEcCCHHH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCN-EIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vad-rIi~L~~G~i~~~~g~y~~ 376 (548)
|+|||||+.+|+||||||||++||+.++.++.++|.++..|||+||||++++..+|| +|++|++|+++.. |+.++
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~-g~~~~ 212 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGP-ISVSE 212 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEE-EEHHH
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEe-cCHHH
Confidence 999999999999999999999999999999999999886699999999999999999 9999999999865 55443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=338.00 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=159.5
Q ss_pred cEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++| +++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+++.++.......+..
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~i~g~~~~~~~~~~~~~- 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLRR- 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH-
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHHh-
Confidence 58999999999 467899999999999999999999999999999999985 4688999999998764322211111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhh-----------cccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQD-----------RATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 292 (548)
..+++++.. ..+..++.+++.. ........++.++++.+++.. ..+ +++.+
T Consensus 84 ------~i~~v~Q~~----~l~~~tv~enl~~-------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 84 ------QVGVVLQDN----VLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAHD-FISELREGYNTIVGEQGAG 145 (247)
T ss_dssp ------HEEEECSSC----CCTTSBHHHHHTT-------TCTTCCHHHHHHHHHHHTCHH-HHHTSTTGGGCBCSTTTTC
T ss_pred ------cEEEEeCCC----ccccccHHHHHhc-------cCCCCCHHHHHHHHHHhChHH-HHHhCcchhhhhhhCCCCC
Confidence 111111110 1122355544421 011123456677788888753 333 34589
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ 224 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998775 679999999999986 4999999999999865
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+++
T Consensus 225 -g~~~~l 230 (247)
T 2ff7_A 225 -GKHKEL 230 (247)
T ss_dssp -ECHHHH
T ss_pred -CCHHHH
Confidence 666554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=342.29 Aligned_cols=211 Identities=22% Similarity=0.347 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|++|||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+..
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEcccCCHHHHhc
Confidence 5999999999986 6899999999999999999999999999999999985 4688999999998764322111111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCC-h-------HHHHHHHHHhC--CCChhhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADS-A-------EPRARRILAGL--GFSRAMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~-------~~~~~~~L~~l--gl~~~~~~~~~~~ 292 (548)
...++++.. ..+..++.+++... ...... . ...+.+++..+ |+. ...++++.+
T Consensus 94 -------~i~~v~Q~~----~l~~~tv~enl~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~ 156 (271)
T 2ixe_A 94 -------QVAAVGQEP----LLFGRSFRENIAYG-----LTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQ 156 (271)
T ss_dssp -------HEEEECSSC----CCCSSBHHHHHHTT-----CSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTT
T ss_pred -------cEEEEecCC----ccccccHHHHHhhh-----cccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCC
Confidence 111111110 11223555544210 000011 0 11234567777 665 346788999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++.. ||+|++|++|+++
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999875 4699999999999875 9999999999998
Q ss_pred EEcCCHHHH
Q psy11936 369 YYKGNYSMF 377 (548)
Q Consensus 369 ~~~g~y~~f 377 (548)
.. |+.+++
T Consensus 236 ~~-g~~~~l 243 (271)
T 2ixe_A 236 EQ-GTHLQL 243 (271)
T ss_dssp EE-ECHHHH
T ss_pred EE-CCHHHH
Confidence 64 666554
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=340.08 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=161.9
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ +..+|+||||+|.+|+++|||||||||||||+++|+|. ..|.+|.|.++++++...+...++..
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~G~~i~~~~~~~~r~~- 129 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--YDISSGCIRIDGQDISQVTQASLRSH- 129 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS--SCCSEEEEEETTEETTSBCHHHHHHT-
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC--CCCCCcEEEECCEEcccCCHHHHhcc-
Confidence 599999999995 57899999999999999999999999999999999974 57889999999998755443222211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~LS 294 (548)
.+++++. ...+..++.+++.. ........++..++..+++... ..+..+.+||
T Consensus 130 ------i~~v~Q~----~~lf~~Tv~eNi~~-------~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 130 ------IGVVPQD----TVLFNDTIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp ------EEEECSS----CCCCSEEHHHHHHT-------TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ------eEEEecC----CccCcccHHHHHHh-------hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 1111111 12234455555421 0111223455566666665422 2234557999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.+...|.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+.. |
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~-G 270 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER-G 270 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE-E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE-C
Confidence 99999999999999999999999999999999999999988765 5799999999999986 999999999999975 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
+++++.
T Consensus 271 ~~~el~ 276 (306)
T 3nh6_A 271 RHEALL 276 (306)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 776654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=331.79 Aligned_cols=207 Identities=24% Similarity=0.269 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++ .+|+|+||+|.+|+++||+|||||||||||++|+|. ..|. |+|.+.++++.......+..
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~-G~i~~~g~~~~~~~~~~~~~--- 73 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGK-GSIQFAGQPLEAWSATKLAL--- 73 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCE-EEEEETTEEGGGSCHHHHHH---
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCC-eEEEECCEECCcCCHHHHhc---
Confidence 5899999986 699999999999999999999999999999999985 4567 99999988764322111111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...++++. ....+..++.+++.. ...... ...++.++|+.+|+.+ ..++++.+|||||||||+|||
T Consensus 74 ----~i~~v~q~---~~~~~~~tv~e~l~~-----~~~~~~-~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAr 139 (249)
T 2qi9_C 74 ----HRAYLSQQ---QTPPFATPVWHYLTL-----HQHDKT-RTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAA 139 (249)
T ss_dssp ----HEEEECSC---CCCCTTCBHHHHHHT-----TCSSTT-CHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHH
T ss_pred ----eEEEECCC---CccCCCCcHHHHHHH-----hhccCC-cHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHH
Confidence 11111111 011223455555421 000111 2667889999999974 678999999999999999999
Q ss_pred HHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 306 ALYIEPT-------LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 306 aL~~~P~-------lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||+.+|+ ||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 140 aL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~ 218 (249)
T 2qi9_C 140 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRRE 218 (249)
T ss_dssp HHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-EEHH
T ss_pred HHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 9999999 99999999999999999999998765 57999999999999999999999999999864 5554
Q ss_pred HH
Q psy11936 376 MF 377 (548)
Q Consensus 376 ~f 377 (548)
++
T Consensus 219 ~~ 220 (249)
T 2qi9_C 219 EV 220 (249)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=333.80 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=158.2
Q ss_pred cEEEEeEEEEe-CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISA-KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y-~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||+++| +++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.......+.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~--- 75 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENWR--- 75 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCCT---
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHH---
Confidence 37899999999 667899999999999999999999999999999999985 468899999998876432111000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~LS 294 (548)
....++++.. ..+..++.+++... ........++.++++.+++.+.. .++++.+||
T Consensus 76 ----~~i~~v~q~~----~l~~~tv~enl~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 141 (243)
T 1mv5_A 76 ----SQIGFVSQDS----AIMAGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141 (243)
T ss_dssp ----TTCCEECCSS----CCCCEEHHHHTTSC------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred ----hhEEEEcCCC----ccccccHHHHHhhh------ccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCC
Confidence 0011111110 11223444443210 01122345677888888886321 124567999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++. .|
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g 219 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SG 219 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eC
Confidence 99999999999999999999999999999999988888888765 679999999999986 599999999999975 57
Q ss_pred CHHHH
Q psy11936 373 NYSMF 377 (548)
Q Consensus 373 ~y~~f 377 (548)
+.+.+
T Consensus 220 ~~~~~ 224 (243)
T 1mv5_A 220 KHNEL 224 (243)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=331.30 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=158.1
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
+|+++||+++|++ ..+|+|+||+|.+|+++||+|||||||||||++|+|.. .+ +|+|.+.+.++.......+.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~-~G~I~i~g~~i~~~~~~~~~- 92 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY--DA-EGDIKIGGKNVNKYNRNSIR- 92 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--CC-EEEEEETTEEGGGBCHHHHH-
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC--CC-CeEEEECCEEhhhcCHHHHh-
Confidence 5999999999976 46999999999999999999999999999999999852 34 89999998876432211110
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~ 292 (548)
....++++. ...+..++.+++.. ........++.++++.+++.... .++++.+
T Consensus 93 ------~~i~~v~Q~----~~l~~~tv~enl~~-------~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~ 155 (260)
T 2ghi_A 93 ------SIIGIVPQD----TILFNETIKYNILY-------GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155 (260)
T ss_dssp ------TTEEEECSS----CCCCSEEHHHHHHT-------TCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC
T ss_pred ------ccEEEEcCC----CcccccCHHHHHhc-------cCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc
Confidence 011111111 11123455555421 01112245667778888775321 1356789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEK 234 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998775 579999999999986 5999999999999864
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
|+.+.+
T Consensus 235 -g~~~~l 240 (260)
T 2ghi_A 235 -GTHKDL 240 (260)
T ss_dssp -ECHHHH
T ss_pred -CCHHHH
Confidence 676654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=326.33 Aligned_cols=199 Identities=20% Similarity=0.285 Sum_probs=155.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..|+++||+++|++ .+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++. . .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~~~~--~---~---- 76 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPIT--K---V---- 76 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGG--G---G----
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCeEEEECCEEhh--h---h----
Confidence 46999999999988 999999999999999999999999999999999985 4688999999887653 1 0
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.....++++. .......++.+++.... .+... ... ..++.++|+.+|+.. . ++++.+|||||||||+||
T Consensus 77 ---~~~i~~v~q~---~~~~~~~tv~enl~~~~-~~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 ---KGKIFFLPEE---IIVPRKISVEDYLKAVA-SLYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp ---GGGEEEECSS---CCCCTTSBHHHHHHHHH-HHTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHH
T ss_pred ---cCcEEEEeCC---CcCCCCCCHHHHHHHHH-HhcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHH
Confidence 0011111111 01122346666654321 11111 223 677889999999975 4 889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||+|+.+ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999988765 479999999999999999998755 3444
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=345.35 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=163.3
Q ss_pred ccEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++| ++..+|+||||+|.+|++++|+|||||||||||++|+|.. . .+|+|.+.++++.......+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCChHHHhC
Confidence 359999999999 6678999999999999999999999999999999999852 3 7899999998775433221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCC----------
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKN---------- 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~---------- 292 (548)
. .+++++. ...+..++.+++. ........++.++|+.+++. ...++++.+
T Consensus 95 ~-------ig~v~Q~----~~lf~~tv~enl~--------~~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~ 154 (390)
T 3gd7_A 95 A-------FGVIPQK----VFIFSGTFRKNLD--------PNAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGC 154 (390)
T ss_dssp T-------EEEESCC----CCCCSEEHHHHHC--------TTCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTT
T ss_pred C-------EEEEcCC----cccCccCHHHHhh--------hccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccc
Confidence 1 1111111 1123345554431 11233466788999999997 467888888
Q ss_pred -CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 293 -FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 293 -LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|++. +.|+|+||||.+.+ ..||+|++|++|+|+.
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ 233 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 57999999998866 4699999999999998
Q ss_pred EcCCHHH
Q psy11936 370 YKGNYSM 376 (548)
Q Consensus 370 ~~g~y~~ 376 (548)
+ |+..+
T Consensus 234 ~-g~~~e 239 (390)
T 3gd7_A 234 Y-DSILE 239 (390)
T ss_dssp E-SSHHH
T ss_pred E-CCHHH
Confidence 7 44433
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=383.06 Aligned_cols=212 Identities=20% Similarity=0.303 Sum_probs=159.6
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|. ..|.+|+|.++|.++...+...++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~--~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL--YDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS--SCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECCEEHHhCCHHHHHh
Confidence 5999999999974 3699999999999999999999999999999999974 5788999999998876544333222
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~ 292 (548)
.+ +++.|. ...+..++.+++... ........+.+++...++.+ ........+
T Consensus 465 ~i-------~~v~Q~----~~l~~~ti~eNi~~g-------~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 526 (1284)
T 3g5u_A 465 II-------GVVSQE----PVLFATTIAENIRYG-------REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526 (1284)
T ss_dssp HE-------EEECSS----CCCCSSCHHHHHHHH-------CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred he-------EEEcCC----CccCCccHHHHHhcC-------CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCc
Confidence 11 111111 112344555554310 11122334444444444321 122345668
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|+|||||||||+||+.+..++.+.|... ++|+|+|||+++++.. ||+|++|++|++++
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~- 604 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE- 604 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999999888654 6899999999999976 99999999999986
Q ss_pred cCCHHHHHH
Q psy11936 371 KGNYSMFKK 379 (548)
Q Consensus 371 ~g~y~~f~~ 379 (548)
.|+++++..
T Consensus 605 ~g~~~~l~~ 613 (1284)
T 3g5u_A 605 QGNHDELMR 613 (1284)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 478776543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=313.35 Aligned_cols=190 Identities=26% Similarity=0.365 Sum_probs=141.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec------eeeccCch
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------QEVVADDL 217 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~------q~i~~~~~ 217 (548)
+|+++||+++|+ ++++|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+ |+.....
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~i~~v~q~~~~~~- 82 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQFSWIMP- 82 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEECSCEEEECSSCCCCS-
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CcCCccEEEECCEEEEEecCCcccC-
Confidence 589999999995 47899999999999999999999999999999999985 467788877654 2211111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhh
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQD 287 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~ 287 (548)
.++.+++.. +......+...++..+++... ..+
T Consensus 83 -----------------------------~tv~enl~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 125 (229)
T 2pze_A 83 -----------------------------GTIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125 (229)
T ss_dssp -----------------------------BCHHHHHHT--------TSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBC
T ss_pred -----------------------------CCHHHHhhc--------cCCcChHHHHHHHHHhCcHHHHHhCccccccccc
Confidence 122221110 000001112223333333211 123
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ ..+ +.|||+||||++++. .||+|++|++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 204 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 204 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence 356899999999999999999999999999999999999999999864 443 579999999999986 5999999999
Q ss_pred CEEEEEcCCHHHH
Q psy11936 365 QKLYYYKGNYSMF 377 (548)
Q Consensus 365 G~i~~~~g~y~~f 377 (548)
|+++.. |+.+.+
T Consensus 205 G~i~~~-g~~~~~ 216 (229)
T 2pze_A 205 GSSYFY-GTFSEL 216 (229)
T ss_dssp TEEEEE-ECHHHH
T ss_pred CEEEEE-CCHHHH
Confidence 999864 666554
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=317.77 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=143.0
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee-ccCchhHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV-VADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i-~~~~~~~~~~ 222 (548)
+|+++||+++|+ ++.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+.-- ...+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~i~~v~Q~~----- 75 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKGSVAYVPQQA----- 75 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECSCEEEECSSC-----
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEEEEcCCC-----
Confidence 489999999997 57899999999999999999999999999999999985 457778877655210 00000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC------h----hhhhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS------R----AMQDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~------~----~~~~~~~~~ 292 (548)
..+..++.+++... .... ......++..+++. . ...++++.+
T Consensus 76 --------------------~~~~~tv~enl~~~------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (237)
T 2cbz_A 76 --------------------WIQNDSLRENILFG------CQLE--EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN 127 (237)
T ss_dssp --------------------CCCSEEHHHHHHTT------SCCC--TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBC
T ss_pred --------------------cCCCcCHHHHhhCc------cccC--HHHHHHHHHHHhhHHHHHhccccccccccCCCCC
Confidence 00112222222100 0000 01112222222221 1 123678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQ---GW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~---~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. .+ +.|||+||||++++. .||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999884 32 579999999999985 6999999999999
Q ss_pred EEEcCCHHHH
Q psy11936 368 YYYKGNYSMF 377 (548)
Q Consensus 368 ~~~~g~y~~f 377 (548)
+.. |+.+.+
T Consensus 207 ~~~-g~~~~~ 215 (237)
T 2cbz_A 207 SEM-GSYQEL 215 (237)
T ss_dssp EEE-ECHHHH
T ss_pred EEe-CCHHHH
Confidence 864 676654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=353.84 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=196.9
Q ss_pred eEEEEeCCceeeEeeeEEEE-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH-hhH
Q psy11936 151 NFSISAKGNDLFVNANLLIA-NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK-ADV 228 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~-~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~-~~~ 228 (548)
+++.+||.+. |+-..|.+. +|+++|||||||||||||||+|+|. ..|..|.|.... ........+. ...
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl--~~p~~G~i~~~~------~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE--IIPNFGDPNSKV------GKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS--SCCCTTCTTSCC------CHHHHHHHHTTSTT
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCCcccccc------chhhHHhhcCCeeH
Confidence 5778897542 554455544 8999999999999999999999985 356666541100 0000000000 000
Q ss_pred HHHHHHHHHHH-----------Hh--hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCH
Q psy11936 229 KRTELLAECAK-----------LE--AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSG 295 (548)
Q Consensus 229 ~~~~l~~~~~~-----------~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 295 (548)
..+...... .. ...+..++.+. +... ....++.++++.+|+. ...++++.+|||
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------l~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSg 141 (538)
T 3ozx_A 75 --YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI-------LTKI---DERGKKDEVKELLNMT-NLWNKDANILSG 141 (538)
T ss_dssp --HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHH-------HHHH---CCSSCHHHHHHHTTCG-GGTTSBGGGCCH
T ss_pred --HHHHHHHhhcccchhhccchhhhhhhhccCcHHHH-------hhcc---hhHHHHHHHHHHcCCc-hhhcCChhhCCH
Confidence 000000000 00 00011112111 1111 1123567899999997 467999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEE--EEc
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLY--YYK 371 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~--~~~ 371 (548)
||||||+|||||+.+|+|||||||||+||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|... .+.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~ 221 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVS 221 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccc
Confidence 9999999999999999999999999999999999999998876 689999999999999999999999865321 112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccce
Q psy11936 372 GNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYV 451 (548)
Q Consensus 372 g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~ 451 (548)
..+..- ..+....... ........... .
T Consensus 222 ~~~~~~-------------------~~~~~~~~g~------------------------~~~~~~~~r~~---------~ 249 (538)
T 3ozx_A 222 KSYAAR-------------------VGINNFLKGY------------------------LPAENMKIRPD---------E 249 (538)
T ss_dssp CCEEHH-------------------HHHHHHHHTE------------------------ETTTTEECSSS---------C
T ss_pred hhhhHH-------------------HHHHHHHhhh------------------------chhhhhhccch---------h
Confidence 222110 0000000000 00000000000 0
Q ss_pred eeeecCCC-----CCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee
Q psy11936 452 VKFSFPDP-----PPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG 521 (548)
Q Consensus 452 ~~~~f~~~-----~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~ 521 (548)
..+....+ ...+.++++++++++.|++ ..|..+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 250 IKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp CCCSCC----------CCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred hhccccccccccccccccceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 00000000 1235679999999999965 4677778774 89999999996 89999999999999999975
Q ss_pred ccceeeeeeecccee
Q psy11936 522 LHNVTFAYEGMKPLL 536 (548)
Q Consensus 522 ~~n~~~~y~~~~~~~ 536 (548)
.+..++|+.|++..
T Consensus 328 -~~~~i~~~~q~~~~ 341 (538)
T 3ozx_A 328 -EKQILSYKPQRIFP 341 (538)
T ss_dssp -SCCCEEEECSSCCC
T ss_pred -CCeeeEeechhccc
Confidence 46688999998643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=349.39 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=196.3
Q ss_pred eEEEEeCCc-eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH-HhhH
Q psy11936 151 NFSISAKGN-DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL-KADV 228 (548)
Q Consensus 151 nls~~y~~~-~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~-~~~~ 228 (548)
|++++|+.. ..|++++ ++.+|+++||+||||||||||||+|+|. ..|..|+|.... ........+ +...
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--l~P~~G~i~~~~------~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK--QKPNLGRFDDPP------EWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS--SCCCTTTTCCSS------CHHHHHHHTTTSTH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC--CCCCCceEeccc------chhhhhheecChhh
Confidence 568899765 4667766 6899999999999999999999999985 456666542100 011000000 0000
Q ss_pred HHHHHHHHHHHHhh--h---cCChhHHHH----HHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 229 KRTELLAECAKLEA--A---DFSSEQQEQ----LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 229 ~~~~l~~~~~~~~~--~---~~~~~~~~~----l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
+ .+......... . .+....... ...+...+. ........++.++|+.+|+.. ..++++.+|||||||
T Consensus 153 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 153 Q--NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQ 228 (608)
T ss_dssp H--HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-HHCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHH
T ss_pred h--hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-hhhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHH
Confidence 0 01100000000 0 000000000 000111111 112234567899999999974 679999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE--EcCCH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY--YKGNY 374 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~--~~g~y 374 (548)
||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +..++
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~ 308 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPA 308 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCE
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCch
Confidence 999999999999999999999999999999999998876 5799999999999999999999998764321 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccCCccceeee
Q psy11936 375 SMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKF 454 (548)
Q Consensus 375 ~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~ 454 (548)
+. +. . + ..+. ........ .. . ......+
T Consensus 309 ~~----~~-----~----------~---~~~~----------------------~~~~~~~~----~~-~---~~~~~~~ 336 (608)
T 3j16_B 309 SV----RE-----G----------I---NIFL----------------------DGHIPAEN----LR-F---RTEALQF 336 (608)
T ss_dssp EH----HH-----H----------H---HHHH----------------------HTEETTTT----EE-C---SSSCCCC
T ss_pred hH----HH-----H----------H---HHhh----------------------ccccchhh----hc-c---ccccccc
Confidence 10 00 0 0 0000 00000000 00 0 0000111
Q ss_pred ecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CC-----ceeEeecCc----cceeeccCCCCCCCCCCeeeccc
Q psy11936 455 SFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QG-----PTELIQKPR----EYVVKFSFPDPPPLQPPILGLHN 524 (548)
Q Consensus 455 ~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g-----~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n 524 (548)
....+ .....+...+++++|++....+++++|+. .| +.+.|.||| |||+|+|+|.++|++|..+ .+
T Consensus 337 ~~~~~--~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~ 412 (608)
T 3j16_B 337 RIADA--TEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PK 412 (608)
T ss_dssp CCSSS--SCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CS
T ss_pred ccccc--ccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cC
Confidence 11111 11122223678889976556889999863 44 788999996 8999999999999999864 35
Q ss_pred eeeeeeeccce
Q psy11936 525 VTFAYEGMKPL 535 (548)
Q Consensus 525 ~~~~y~~~~~~ 535 (548)
..++|+.|++.
T Consensus 413 ~~i~~~~q~~~ 423 (608)
T 3j16_B 413 LNVSMKPQKIA 423 (608)
T ss_dssp CCEEEECSSCC
T ss_pred CcEEEeccccc
Confidence 67899999854
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=340.71 Aligned_cols=213 Identities=21% Similarity=0.295 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
..|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--YDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECCEEhhhCCHHHHhc
Confidence 35999999999974 6799999999999999999999999999999999984 5788999999998764332221111
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKN 292 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~ 292 (548)
..+++++.. ..+..++.+++.. . ......++++.++++.+|+.+.. .+....+
T Consensus 418 -------~i~~v~Q~~----~l~~~tv~eni~~-----~-~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 418 -------HFALVSQNV----HLFNDTIANNIAY-----A-AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred -------CeEEEcCCC----ccccccHHHHHhc-----c-CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 112222211 1123344444321 0 00122356677888888775321 2234579
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIER 559 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998875 579999999999986 6999999999999864
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 560 -g~~~~l~ 566 (582)
T 3b5x_A 560 -GRHADLL 566 (582)
T ss_pred -CCHHHHH
Confidence 7776653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.57 Aligned_cols=211 Identities=22% Similarity=0.291 Sum_probs=163.4
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~~~- 417 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRN- 417 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHH-
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--cCCCCCeEEECCEEccccCHHHHHh-
Confidence 5999999999974 6799999999999999999999999999999999984 5788999999998875433222111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc-----------ccCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR-----------ATKN 292 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----------~~~~ 292 (548)
..+++++. ...+..++.+++.. . ......++++.++++.+++.+ ..++ ...+
T Consensus 418 ------~i~~v~Q~----~~l~~~tv~eni~~-----~-~~~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 418 ------QVALVSQN----VHLFNDTVANNIAY-----A-RTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp ------TEEEECSS----CCCCSSBHHHHHHT-----T-TTSCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCS
T ss_pred ------hCeEEccC----CcCCCCCHHHHHhc-----c-CCCCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCC
Confidence 11111111 11233466555431 0 001234567888888888863 2233 4579
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 689999999999986 6999999999999865
Q ss_pred cCCHHHHH
Q psy11936 371 KGNYSMFK 378 (548)
Q Consensus 371 ~g~y~~f~ 378 (548)
|++++..
T Consensus 560 -g~~~~l~ 566 (582)
T 3b60_A 560 -GTHSELL 566 (582)
T ss_dssp -ECHHHHH
T ss_pred -cCHHHHH
Confidence 7776653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=335.97 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=161.1
Q ss_pred cEEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|+ +.++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++++++...+...++..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL--IDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS--SCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEECCEEcccCCHHHHHhh
Confidence 599999999994 46799999999999999999999999999999999974 57889999999988755443322211
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~L 293 (548)
+ .+++|. ...+..++.+++.. ........++.+.++..++.+ ...++.+.+|
T Consensus 419 i-------~~v~Q~----~~lf~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 419 I-------SAVPQE----TVLFSGTIKENLKW-------GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp E-------EEECSS----CCCCSEEHHHHHTT-------TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred e-------EEECCC----CcCcCccHHHHHhc-------cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 1 111111 11234455554421 111222344445555544432 1235667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+. .||+|++|++|+++..
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~- 558 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGF- 558 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999988765 579999999999986 7999999999999875
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|++++..+
T Consensus 559 g~~~el~~ 566 (587)
T 3qf4_A 559 GTHKELLE 566 (587)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 77776543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=334.46 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=161.0
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|.++...+...++..
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC--CCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 5999999999964 5799999999999999999999999999999999984 57889999999988754433222111
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
.+++++. ...+..++.+++.. ......+.++.++++..++.+.. .+....+|
T Consensus 417 -------i~~v~Q~----~~l~~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 417 -------IGLVQQD----NILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp -------EEEECSS----CCCCSSBHHHHHGG-------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred -------eEEEeCC----CccCcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 1111111 12234455555421 11223345566677766664221 23345689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.+...+.+.|..+ ++|+|+||||++.+.. ||+|++|++|+++..
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~- 556 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVET- 556 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999988765 5799999999999865 999999999999875
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 557 g~~~el~ 563 (578)
T 4a82_A 557 GTHRELI 563 (578)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 7776653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=304.65 Aligned_cols=187 Identities=27% Similarity=0.383 Sum_probs=127.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEec------eeeccCchhH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCE------QEVVADDLTA 219 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~------q~i~~~~~~~ 219 (548)
.|+++||++.+ +.+|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+ |+......
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~l~~~-- 113 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQNSWIMPG-- 113 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCSCEEEECSSCCCCSS--
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEEEEEeCCCccCcc--
Confidence 48899999863 6799999999999999999999999999999999985 456778776554 32211111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcc
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRA 289 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~ 289 (548)
++.+++. +......++..++..+++... ..+++
T Consensus 114 ----------------------------tv~enl~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 114 ----------------------------TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp ----------------------------BHHHHHH---------TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred ----------------------------cHHHHhh---------CcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 2222111 000001112223333333211 12334
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYL-QGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L-~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+++ ..+ +.|||+||||++++. .||+|++|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 6899999999999999999999999999999999999999999864 333 579999999999986 599999999999
Q ss_pred EEEEcCCHHHH
Q psy11936 367 LYYYKGNYSMF 377 (548)
Q Consensus 367 i~~~~g~y~~f 377 (548)
++.. |+.+++
T Consensus 236 i~~~-g~~~~l 245 (290)
T 2bbs_A 236 SYFY-GTFSEL 245 (290)
T ss_dssp EEEE-ECHHHH
T ss_pred EEEe-CCHHHH
Confidence 9864 666654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.15 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=161.2
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++|+++...+...++..
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--~~p~~G~i~~~g~~i~~~~~~~~r~~- 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--YDVDRGQILVDGIDIRKIKRSSLRSS- 430 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS--SCCSEEEEEETTEEGGGSCHHHHHHH-
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--cCCCCeEEEECCEEhhhCCHHHHHhc-
Confidence 5999999999964 6799999999999999999999999999999999984 57889999999998765443322211
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc-----------ccCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR-----------ATKNF 293 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----------~~~~L 293 (548)
.++++|. ...+..++.+++.. ......+.++.++++.+++.+ ..++ ...+|
T Consensus 431 ------i~~v~Q~----~~lf~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 431 ------IGIVLQD----TILFSTTVKENLKY-------GNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp ------EEEECTT----CCCCSSBHHHHHHS-------SSTTCCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTS
T ss_pred ------eEEEeCC----CccccccHHHHHhc-------CCCCCCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCC
Confidence 1111111 12234466555421 111122344566666666642 2222 34789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+++. .
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~ 570 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-M 570 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-C
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999999888765 6899999999999865 99999999999986 4
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 571 g~~~~l~ 577 (598)
T 3qf4_B 571 GKHDELI 577 (598)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 7877654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=341.63 Aligned_cols=228 Identities=21% Similarity=0.334 Sum_probs=157.4
Q ss_pred ccEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccC------
Q psy11936 145 VDIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVAD------ 215 (548)
Q Consensus 145 ~~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~------ 215 (548)
.+|+++||+++|++ +++|+|+||+|.+|+++||+||||||||||||+|+|. ..|.+|.|.+.+. .+...
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--l~P~sG~I~~~~~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--LLPTSGEVYTHENCRIAYIKQHAFA 747 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--SCCSEEEEEECTTCCEEEECHHHHH
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEEcCccceEeeccchhh
Confidence 36999999999975 6799999999999999999999999999999999985 4677888877542 11000
Q ss_pred ------chhHHHHHHHhhHHHH----HHHHH---HH--------------------------------------------
Q psy11936 216 ------DLTAVESVLKADVKRT----ELLAE---CA-------------------------------------------- 238 (548)
Q Consensus 216 ------~~~~~~~~~~~~~~~~----~l~~~---~~-------------------------------------------- 238 (548)
+.+..+ .+...++.. .+... ..
T Consensus 748 ~l~~~~~~t~~e-~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSE-YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHH-HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHH-HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 000000 000000000 00000 00
Q ss_pred ------------HHhhhcCCh-hHHHHHHHHHHHH------H-hcCCCChHHHHHHHHHhCCCChhh-hhcccCCCCHHH
Q psy11936 239 ------------KLEAADFSS-EQQEQLKEIYEEL------K-AIGADSAEPRARRILAGLGFSRAM-QDRATKNFSGGW 297 (548)
Q Consensus 239 ------------~~~~~~~~~-~~~~~l~~~~~~l------~-~~~~~~~~~~~~~~L~~lgl~~~~-~~~~~~~LSGGq 297 (548)
...+..... .....+......+ . .........++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 000000000 0000000000001 0 111223457789999999998544 688999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHH
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYS 375 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~ 375 (548)
||||+|||||+.+|+||||||||||||+.+..+|.+.|+++++|||+||||++++..+||+|++|++|+++..+.+|.
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~~ 984 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC------
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665553
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=319.77 Aligned_cols=192 Identities=26% Similarity=0.326 Sum_probs=149.9
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~~ 218 (548)
..|+++|+++.|++ ..|+++||+|.+|+++||+|||||||||||++|+|. ..|.+|+ |+|..|+.....
T Consensus 286 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~~~~~i~~v~Q~~~~~~-- 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIEWDLTVAYKPQYIKADY-- 360 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--SCCSBCCCCCCCCEEEECSSCCCCC--
T ss_pred eEEEEeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCeEEEECceEEEEecCCcCCC--
Confidence 46999999999987 479999999999999999999999999999999985 3455554 455555432210
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
..++.+.+..... ... ....++.++|+.+|+. ...++++.+||||||
T Consensus 361 ---------------------------~~tv~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 407 (538)
T 1yqt_A 361 ---------------------------EGTVYELLSKIDA--SKL---NSNFYKTELLKPLGII-DLYDREVNELSGGEL 407 (538)
T ss_dssp ---------------------------SSBHHHHHHHHHH--HHH---TCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHH
T ss_pred ---------------------------CCcHHHHHHhhhc--cCC---CHHHHHHHHHHHcCCh-hhhcCChhhCCHHHH
Confidence 1111111110000 000 1234677889999997 567999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEcC
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYKG 372 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~g 372 (548)
|||+|||||+.+|+||||||||||||+.++..|.++|.++ +.|||+||||++++..+||+|++|++ |.+... |
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~-g 486 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA-L 486 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE-C
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec-C
Confidence 9999999999999999999999999999999999988754 68999999999999999999999986 677655 4
Q ss_pred CHH
Q psy11936 373 NYS 375 (548)
Q Consensus 373 ~y~ 375 (548)
+.+
T Consensus 487 ~~~ 489 (538)
T 1yqt_A 487 PPM 489 (538)
T ss_dssp CCE
T ss_pred CHH
Confidence 443
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=320.70 Aligned_cols=191 Identities=26% Similarity=0.339 Sum_probs=149.6
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCchh
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDLT 218 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~~ 218 (548)
..|+++|+++.|++. .|+++||+|.+|+++||+|||||||||||++|+|.. .|.+|+ |+|..|+.....
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~~~~~i~~v~Q~~~~~~-- 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEY-- 430 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBSCCCCCCCEEEECSSCCCCC--
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEEeeEEEEEecCccCCC--
Confidence 469999999999874 789999999999999999999999999999999853 455554 455555432211
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHH-HHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEI-YEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
..++.+++... ...+ ....++.++|+.+|+. ...++++.+|||||
T Consensus 431 ---------------------------~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe 476 (607)
T 3bk7_A 431 ---------------------------EGTVYELLSKIDSSKL------NSNFYKTELLKPLGII-DLYDRNVEDLSGGE 476 (607)
T ss_dssp ---------------------------SSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCT-TTTTSBGGGCCHHH
T ss_pred ---------------------------CCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCc-hHhcCChhhCCHHH
Confidence 11111111100 0000 0134567889999997 46799999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~ 371 (548)
||||+|||||+.+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||+|++|++ |.+...
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~- 555 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA- 555 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE-
T ss_pred HHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec-
Confidence 99999999999999999999999999999999999988764 68999999999999999999999986 776655
Q ss_pred CCHH
Q psy11936 372 GNYS 375 (548)
Q Consensus 372 g~y~ 375 (548)
|+.+
T Consensus 556 g~p~ 559 (607)
T 3bk7_A 556 LPPM 559 (607)
T ss_dssp CCCE
T ss_pred CCHH
Confidence 4433
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=322.14 Aligned_cols=196 Identities=20% Similarity=0.242 Sum_probs=149.0
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
..++++|+++.|++ ..|..+||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.+.+..+.......
T Consensus 268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~i~~~~q~~----- 339 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE--ITADEGSVTPEKQILSYKPQRI----- 339 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS--SCCSBCCEESSCCCEEEECSSC-----
T ss_pred ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCeeeEeechhc-----
Confidence 46899999999987 468888999999999999999999999999999985 4677787765544332110000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
...+..++.+++.. ............+.++|+.+|+. ...++++.+|||||||||+||
T Consensus 340 -----------------~~~~~~tv~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 340 -----------------FPNYDGTVQQYLEN----ASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIA 397 (538)
T ss_dssp -----------------CCCCSSBHHHHHHH----HCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHH
T ss_pred -----------------ccccCCCHHHHHHH----hhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 00011222222211 00000012234567889999997 467999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~ 370 (548)
|||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |.+...
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccC
Confidence 9999999999999999999999999988888754 67999999999999999999999986 444433
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=330.00 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=90.2
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD 348 (548)
.+|+.+||.....++++.+|||||||||+|||||+.+|+ ||||||||||||+.++.+|.++|+++ +.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 468899997545689999999999999999999999998 99999999999999999999988765 5899999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
++++. .||+|++| ++|+++.. |+.+++
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~~~-g~~~~~ 296 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVVAA-GTPEEV 296 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEEEE-ECHHHH
T ss_pred HHHHh-hCCEEEEecccccccCCEEEEe-cCHHHH
Confidence 99876 59999999 89999864 666543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=344.25 Aligned_cols=213 Identities=18% Similarity=0.281 Sum_probs=165.4
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|.| +..|.+|+|.++|.++...+...++.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER--FYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT--SSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc--CccCCCCEEEECCEEhhhCCHHHHHh
Confidence 5999999999964 369999999999999999999999999999999997 46789999999999987655444332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhh------hhc----ccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAM------QDR----ATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~------~~~----~~~ 291 (548)
.+ .+++| +...|..+..+|+.. +.. ....++.+.++++..++.+.. .+. ...
T Consensus 1154 ~i-------~~V~Q----dp~LF~gTIreNI~~------gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1154 QI-------AIVSQ----EPTLFDCSIAENIIY------GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp TE-------EEECS----SCCCCSEEHHHHHSS------SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC
T ss_pred he-------EEECC----CCEeeCccHHHHHhc------cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc
Confidence 21 11111 122355566655420 011 122455677777777664221 122 335
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+||||||||++|||||+.+|+|||||||||+||+++...+.+.|++. ++|+|+|+|.++.+.. ||+|++|++|+|++
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE 1295 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE
Confidence 79999999999999999999999999999999999999999999875 5799999999999865 99999999999998
Q ss_pred EcCCHHHHHH
Q psy11936 370 YKGNYSMFKK 379 (548)
Q Consensus 370 ~~g~y~~f~~ 379 (548)
+ |++++..+
T Consensus 1296 ~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1296 K-GTHTQLMS 1304 (1321)
T ss_dssp E-ECHHHHHH
T ss_pred E-CCHHHHHh
Confidence 7 77776543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.91 Aligned_cols=191 Identities=23% Similarity=0.278 Sum_probs=146.2
Q ss_pred EeEEEEeCC-ceeeEeeeEEEECC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE------EEEeceeeccCch
Q psy11936 150 ENFSISAKG-NDLFVNANLLIANG-----RRYGLVGPNGHGKTTLLRHIASRDLKVPPNID------ILYCEQEVVADDL 217 (548)
Q Consensus 150 ~nls~~y~~-~~iL~~vsl~I~~G-----e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~------I~~~~q~i~~~~~ 217 (548)
.+++++|++ ..+++++||++.+| |++||+|||||||||||++|+|.. .|.+|. +.|..|.+....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~--~p~~G~~~~~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL--KPDEGQDIPKLNVSMKPQKIAPKF- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS--CCSBCCCCCSCCEEEECSSCCCCC-
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCcCccCCcEEEecccccccC-
Confidence 567788876 45899999999999 789999999999999999999853 455553 566665432110
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH
Q psy11936 218 TAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 297 (548)
..++.+++. . ...+.......+.++|+.+|+.. ..++++.+|||||
T Consensus 427 ----------------------------~~tv~e~~~---~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGq 472 (608)
T 3j16_B 427 ----------------------------PGTVRQLFF---K--KIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGE 472 (608)
T ss_dssp ----------------------------CSBHHHHHH---H--HCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHH
T ss_pred ----------------------------CccHHHHHH---H--HhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHH
Confidence 011111100 0 00011122345667899999974 6799999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC--CEEEEEc
Q psy11936 298 RMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ--QKLYYYK 371 (548)
Q Consensus 298 kqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~--G~i~~~~ 371 (548)
||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++...+
T Consensus 473 kQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 99999999999999999999999999999999888887654 68999999999999999999999986 8887765
Q ss_pred CCHHHH
Q psy11936 372 GNYSMF 377 (548)
Q Consensus 372 g~y~~f 377 (548)
.+.+.+
T Consensus 553 ~p~~~~ 558 (608)
T 3j16_B 553 APESLL 558 (608)
T ss_dssp CCEEHH
T ss_pred ChHHHh
Confidence 554443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=339.45 Aligned_cols=214 Identities=18% Similarity=0.253 Sum_probs=157.8
Q ss_pred ccEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 145 VDIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 145 ~~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|. ..|.+|+|.++|.++...+...++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF--YDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS--SCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--cCCCCCEEEECCEEcccCCHHHHH
Confidence 359999999999753 699999999999999999999999999999999974 578899999999887544332211
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh----------hhhcccC
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA----------MQDRATK 291 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~ 291 (548)
. ...+++|. ...+..++.+++.. ...........+.+.++..++.+. .......
T Consensus 1107 ~-------~i~~v~Q~----~~l~~~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1107 A-------QLGIVSQE----PILFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp T-------SCEEEESS----CCCCSSBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred h-------ceEEECCC----CccccccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 1 11111111 11234455444310 000011223344445554444321 1122346
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|... ++|||+||||++++.. ||+|++|++|++++
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999765 5799999999999865 99999999999997
Q ss_pred EcCCHHHHH
Q psy11936 370 YKGNYSMFK 378 (548)
Q Consensus 370 ~~g~y~~f~ 378 (548)
+ |+++++.
T Consensus 1250 ~-g~~~~l~ 1257 (1284)
T 3g5u_A 1250 H-GTHQQLL 1257 (1284)
T ss_dssp E-ECHHHHH
T ss_pred E-CCHHHHH
Confidence 6 7777654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=331.05 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeCC---ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKG---NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~---~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||+|+|++ .++|+|+||+|++|+.+|||||||||||||+++|.|. ..|.+|.|.++|.++...+...++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--YDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc--cccccCcccCCCccchhccHHHHhh
Confidence 5999999999963 5799999999999999999999999999999999974 6889999999999887655444332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcC-CCChHHHHHHHHHhCCCChhh----------hhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG-ADSAEPRARRILAGLGFSRAM----------QDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~L~~lgl~~~~----------~~~~~~ 291 (548)
.+.. +.| +...++.+..+|+. ++ .+..++++.++++..++.+.. ......
T Consensus 493 ~i~~-------v~Q----~~~Lf~~TI~eNI~--------~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~ 553 (1321)
T 4f4c_A 493 NVAV-------VSQ----EPALFNCTIEENIS--------LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553 (1321)
T ss_dssp HEEE-------ECS----SCCCCSEEHHHHHH--------TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC
T ss_pred cccc-------cCC----cceeeCCchhHHHh--------hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC
Confidence 2211 111 12335666666652 12 223456677777776654221 223446
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYY 369 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~ 369 (548)
+|||||||||+|||||+.+|+|||||||||+||..+...+.+.|.++ ++|+|+|||++..+. .||+|++|++|+|++
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE 632 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec
Confidence 79999999999999999999999999999999999988888888765 689999999999985 599999999999997
Q ss_pred EcCCHHHHH
Q psy11936 370 YKGNYSMFK 378 (548)
Q Consensus 370 ~~g~y~~f~ 378 (548)
. |++++..
T Consensus 633 ~-Gth~eL~ 640 (1321)
T 4f4c_A 633 V-GDHRALM 640 (1321)
T ss_dssp E-ECHHHHH
T ss_pred c-CCHHHHH
Confidence 5 7777643
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=295.13 Aligned_cols=107 Identities=25% Similarity=0.356 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT---LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~---lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.+.|..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++|+++ +.||
T Consensus 520 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 520 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 34567788999997545688999999999999999999998874 99999999999999999988888765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
|+||||++++. .||+|++| ++|+|+.. |+.++.
T Consensus 600 i~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~-g~~~~~ 638 (670)
T 3ux8_A 600 LVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAV-GTPEEV 638 (670)
T ss_dssp EEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEE-ECHHHH
T ss_pred EEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe-cCHHHH
Confidence 99999999884 69999999 89999865 666554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=287.01 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIE---PTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~---P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.++|..+||.....++++.+|||||+|||+||++|+.+ |+||||||||+|||+.++..|.++|..+ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 356788999999975446889999999999999999999996 7999999999999999999998887654 6899
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
|+||||++++ .+||+|++| ++|+|+. .|+.+++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEE-EcCHHHHH
Confidence 9999999999 689999999 6899986 47776653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=266.97 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE----eC
Q psy11936 293 FSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL----DQ 364 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L----~~ 364 (548)
|||||||||+||++|+.+| +||||||||||||+.++.+|.++|+++ ++|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 48999999999887 479999999 99
Q ss_pred CEEEEE
Q psy11936 365 QKLYYY 370 (548)
Q Consensus 365 G~i~~~ 370 (548)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=275.14 Aligned_cols=107 Identities=26% Similarity=0.370 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLL 343 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvI 343 (548)
.++.++|..+||.....++++.+|||||+|||+||++|+.+| +||||||||+|||+.++..|.++|..+ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356789999999754568999999999999999999999865 999999999999999999999888754 68999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 344 IVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 344 iVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
+||||++++ .+||+|++| ++|+++.. |+.+.+.
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~-g~~~el~ 941 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAV-GTPEEVA 941 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEE-ESHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEe-cCHHHHH
Confidence 999999998 579999999 68999864 6666543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=276.07 Aligned_cols=107 Identities=26% Similarity=0.380 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeE
Q psy11936 269 EPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP---TLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTL 342 (548)
Q Consensus 269 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P---~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~Tv 342 (548)
..++.++|..+||.....++++.+|||||+|||+|||||+.+| +||||||||+|||+.++..|.++|.++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4567789999999755568899999999999999999999875 799999999999999999999988764 6899
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHH
Q psy11936 343 LIVSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMF 377 (548)
Q Consensus 343 IiVSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f 377 (548)
|+||||++++.. ||+|++| ++|+|+.. |+.++.
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~-Gtpeel 900 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVAT-GTPEEI 900 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEE-ESHHHH
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEE-cCHHHH
Confidence 999999999865 9999999 89999875 666554
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=242.72 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=75.4
Q ss_pred hcccCCCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcC
Q psy11936 287 DRATKNFSGGWRMRVSLARALY------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vad 357 (548)
++++.+|||||+|||+||+||+ .+|++|||||||++||+.++.++.++|..+ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5789999999999999999999 799999999999999999999999999875 5799999999998 46799
Q ss_pred EEEEEeCCEEEE
Q psy11936 358 EIIHLDQQKLYY 369 (548)
Q Consensus 358 rIi~L~~G~i~~ 369 (548)
+|++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-30 Score=282.37 Aligned_cols=198 Identities=14% Similarity=0.175 Sum_probs=138.8
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-E-EEEeceeeccCchhHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-D-ILYCEQEVVADDLTAVES 222 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~-I~~~~q~i~~~~~~~~~~ 222 (548)
.+|+++||+++|+ ++||++.+|++++|+||||||||||+|+|+|. ..|.+| . |.+++ +.. ...
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--~~p~~G~~pI~vdg-~~~-~~i----- 181 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--ALKFNAYQPLYINL-DPQ-QPI----- 181 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--THHHHCCCCEEEEC-CTT-SCS-----
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--ccccCCceeEEEcC-Ccc-CCe-----
Confidence 3577888888885 79999999999999999999999999999985 356667 6 76654 110 000
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
.++++...+.......++.+++ + ............++..++..+|+... .+ +.+|||||+|||+
T Consensus 182 ---------~~vpq~~~l~~~~~~~tv~eni---~-~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 182 ---------FTVPGCISATPISDILDAQLPT---W-GQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLG 245 (460)
T ss_dssp ---------SSCSSCCEEEECCSCCCTTCTT---C-SCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHH
T ss_pred ---------eeeccchhhcccccccchhhhh---c-ccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHH
Confidence 0000000000000000111000 0 00000000112234557788898743 33 7899999999999
Q ss_pred HHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHH------HHHhhcCE-----EEEEe-
Q psy11936 303 LARA--LYIEPTL----LLLDE-PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQS------FLDNVCNE-----IIHLD- 363 (548)
Q Consensus 303 LAra--L~~~P~l----LLLDE-PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~------~l~~vadr-----Ii~L~- 363 (548)
|||| |+.+|++ ||||| ||++||+. ...|.++++.++.|+|+||||.. ++..+||+ |++|+
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 9999 9999999 99999 99999999 88899999888999999999987 77889999 99999
Q ss_pred CCEEEEEcCCHHH
Q psy11936 364 QQKLYYYKGNYSM 376 (548)
Q Consensus 364 ~G~i~~~~g~y~~ 376 (548)
+|+++ .|+.+.
T Consensus 325 ~G~iv--~g~~~~ 335 (460)
T 2npi_A 325 LDGVS--AVDDVY 335 (460)
T ss_dssp CTTCC--CCCHHH
T ss_pred CCcEE--ECCHHH
Confidence 99998 566544
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=229.83 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=76.2
Q ss_pred hhcccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEE
Q psy11936 286 QDRATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrI 359 (548)
.+.++..|||||||||+||+||+ .+|+||||||||++||+..+.+|.++|..+ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 689999999999999999999999999876 569999999975 45689987
Q ss_pred --EEEeCCEEEEEcCCHH
Q psy11936 360 --IHLDQQKLYYYKGNYS 375 (548)
Q Consensus 360 --i~L~~G~i~~~~g~y~ 375 (548)
++|.+|.......+.+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 8888887766555544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=208.00 Aligned_cols=145 Identities=13% Similarity=0.150 Sum_probs=93.5
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhh
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAA 243 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (548)
||||+|.+|++++|+||||||||||++++.+.. .+. +...+... +.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~--------------~~~--~~d~~~g~----------~~~~------ 48 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT--------------EVI--SSDFCRGL----------MSDD------ 48 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG--------------GEE--EHHHHHHH----------HCSS------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC--------------eEE--ccHHHHHH----------hcCc------
Confidence 689999999999999999999999999875310 000 00011100 0000
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy11936 244 DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323 (548)
Q Consensus 244 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L 323 (548)
........ ..+..+ . .........|+.. . .......||||+|||+|||||+.+|++|||||||++|
T Consensus 49 ~~~~~~~~---~~~~~~--------~-~~~~~~~~~g~~~-~-~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~L 114 (171)
T 4gp7_A 49 ENDQTVTG---AAFDVL--------H-YIVSKRLQLGKLT-V-VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVC 114 (171)
T ss_dssp TTCGGGHH---HHHHHH--------H-HHHHHHHHTTCCE-E-EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred ccchhhHH---HHHHHH--------H-HHHHHHHhCCCeE-E-EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHH
Confidence 00000000 000000 0 0111222345442 2 2234567999999999999999999999999999999
Q ss_pred CHH----------------HHHHHHHHHhh---cCCeEEEEecCHHHHHh
Q psy11936 324 DLN----------------AVIWLDNYLQG---WKKTLLIVSHDQSFLDN 354 (548)
Q Consensus 324 D~~----------------s~~~L~~~L~~---~~~TvIiVSHD~~~l~~ 354 (548)
|+. ....+.+.|.. .+.|+|+||||++++..
T Consensus 115 d~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 115 QERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 998 55777777543 36899999999999976
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-24 Score=205.32 Aligned_cols=82 Identities=5% Similarity=-0.016 Sum_probs=72.5
Q ss_pred hhhcccCCCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEEEEe---cCHHHHHh
Q psy11936 285 MQDRATKNFSGGWRMRVSLARA-----LYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLLIVS---HDQSFLDN 354 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAra-----L~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvIiVS---HD~~~l~~ 354 (548)
..++++.+|||||+||++||+| |+.+|++||||| ||++||+....++.+++.+.+.|+|++| ||+.++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 3577889999999999999996 999999999999 9999999999999999998777788888 59999999
Q ss_pred hcCEEEEEeCCEEEEE
Q psy11936 355 VCNEIIHLDQQKLYYY 370 (548)
Q Consensus 355 vadrIi~L~~G~i~~~ 370 (548)
+|++ .+|+++.+
T Consensus 149 i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 149 IRRL----PGAVLIEL 160 (178)
T ss_dssp HHTC----TTCEEEEC
T ss_pred HHhc----CCcEEEEe
Confidence 9997 44555543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-23 Score=235.20 Aligned_cols=198 Identities=23% Similarity=0.238 Sum_probs=140.9
Q ss_pred HHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEE
Q psy11936 270 PRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLI 344 (548)
Q Consensus 270 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIi 344 (548)
.++. .|..+||....+++++.+|||||+|||+||++|+.+|+ ||||||||++||+..+.+|.++|+. .+.|||+
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4444 68899997544799999999999999999999999995 9999999999999999999887654 4789999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy11936 345 VSHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKE 418 (548)
Q Consensus 345 VSHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 418 (548)
||||++++. .||+|++| ++|+++ +.|++++|....... . .
T Consensus 437 VeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~--------------~--------------~---- 482 (842)
T 2vf7_A 437 VEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQ--------------T--------------G---- 482 (842)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCH--------------H--------------H----
T ss_pred EcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHH--------------H--------------H----
Confidence 999999875 69999999 678887 468888764311000 0 0
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCCCCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEe
Q psy11936 419 VLTRKQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELI 497 (548)
Q Consensus 419 ~~~~~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i 497 (548)
. .+.. . ... + +...+.+.++|+++++++. .|+||||.. .|+.+.|
T Consensus 483 -------~---~l~~---~-~~~-----~---------~~~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I 528 (842)
T 2vf7_A 483 -------Q---YLFA---D-RHT-----E---------PHTPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSV 528 (842)
T ss_dssp -------H---HHHT---C-CCC-----C---------CCCCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEE
T ss_pred -------H---Hhhh---c-ccc-----c---------ccccCCCCceEEEEeeeec------ccccceEEEcCCCEEEE
Confidence 0 0000 0 000 0 0011234578999999861 699999986 9999999
Q ss_pred ecCc----cceeec-cC-------CCCCCCCCCe-------------eec---cceeeeeeecccee
Q psy11936 498 QKPR----EYVVKF-SF-------PDPPPLQPPI-------------LGL---HNVTFAYEGMKPLL 536 (548)
Q Consensus 498 ~~~~----~~~~~~-~~-------~~~~~~~~~~-------------~~~---~n~~~~y~~~~~~~ 536 (548)
.|+| |||+++ |+ |..+|..|.+ ..+ +-.++-|+.|+|+-
T Consensus 529 ~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~ 595 (842)
T 2vf7_A 529 TGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIG 595 (842)
T ss_dssp ECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSC
T ss_pred EcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCC
Confidence 9986 899997 65 4445655654 223 44567799999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-25 Score=219.06 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=91.5
Q ss_pred EeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 155 SAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 155 ~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
+|+++.+|+++ .+|+++||+|||||||||||++|+|. .|.+|+|... .+.... .... ...+++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl---~p~~G~I~~~--~~~~~~-~~~~-------~~ig~v 71 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ---ALQSKQVSRI--ILTRPA-VEAG-------EKLGFL 71 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH---HHHTTSCSEE--EEEECS-CCTT-------CCCCSS
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC---CCcCCeeeeE--EecCCc-hhhh-------cceEEe
Confidence 46667788886 89999999999999999999999984 4555655321 111000 0000 000011
Q ss_pred HHHHHHhhh-cCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCE
Q psy11936 235 AECAKLEAA-DFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313 (548)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~l 313 (548)
++.. .++. .+... ....+. ......++.++++. |+ ||||||+|||||+.+|+|
T Consensus 72 ~q~~-~enl~~~~~~-------~~~~~~---~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~l 125 (208)
T 3b85_A 72 PGTL-NEKIDPYLRP-------LHDALR---DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAF 125 (208)
T ss_dssp CC-------CTTTHH-------HHHHHT---TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEE
T ss_pred cCCH-HHHHHHHHHH-------HHHHHH---HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCE
Confidence 1100 0000 00000 001111 10112345555554 33 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 314 LLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 314 LLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|||||||++ ++.++.++|.++ +.||| ||||++++.. +..+.+|.
T Consensus 126 llLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 126 VILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp EEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred EEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999 888888888876 46888 9999987653 33445553
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=207.62 Aligned_cols=81 Identities=28% Similarity=0.444 Sum_probs=70.1
Q ss_pred hhcccCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 286 QDRATKNFSGGWRM------RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 286 ~~~~~~~LSGGqkq------RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+.++..|.++|..+ +.|||+||||.++ ..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhC
Confidence 46788999999999 678888889999999999999999999999999998765 3599999999765 5789
Q ss_pred CEEEEEe--CCEE
Q psy11936 357 NEIIHLD--QQKL 367 (548)
Q Consensus 357 drIi~L~--~G~i 367 (548)
|+|++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999885 5543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=225.09 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEE
Q psy11936 271 RARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIV 345 (548)
Q Consensus 271 ~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiV 345 (548)
+..++|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+....+|.++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678889997544689999999999999999999999887 99999999999999999999999876 4799999
Q ss_pred ecCHHHHHhhcCEEEEE------eCCEEEEEcCCHHHHH
Q psy11936 346 SHDQSFLDNVCNEIIHL------DQQKLYYYKGNYSMFK 378 (548)
Q Consensus 346 SHD~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~ 378 (548)
|||++++.. ||+|++| ++|++++ .|+++++.
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~-~G~~~e~~ 559 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVF-QGTVDELL 559 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEE-EECHHHHH
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEE-eechhhhh
Confidence 999999865 9999999 8888874 68887653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=198.50 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=74.9
Q ss_pred hcccC-CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhc
Q psy11936 287 DRATK-NFSGGWRMRVSLARALY---------IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 287 ~~~~~-~LSGGqkqRvaLAraL~---------~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~va 356 (548)
++++. .|||||+|||+||++|+ .+|+||||||||++||+..+..|.++|..+..|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 56777 89999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred CEEEEEeCCEEEEEcCCH
Q psy11936 357 NEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 357 drIi~L~~G~i~~~~g~y 374 (548)
|++++|++|+++.. |+.
T Consensus 335 ~~i~~l~~G~i~~~-g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTPV-ADE 351 (359)
T ss_dssp SEEEEEETTEEEEC-CCT
T ss_pred CEEEEEECCEEEec-CCH
Confidence 99999999999865 443
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-22 Score=226.39 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=138.3
Q ss_pred HHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCeEEEEecC
Q psy11936 274 RILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQG---WKKTLLIVSHD 348 (548)
Q Consensus 274 ~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~TvIiVSHD 348 (548)
+.|..+||....+++++.+|||||+|||+||++|..+| +||||||||++||+....+|.++|++ .+.|||+||||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46889999743469999999999999999999999985 99999999999999999999988765 46899999999
Q ss_pred HHHHHhhcCEEEEE------eCCEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy11936 349 QSFLDNVCNEIIHL------DQQKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKAHGQSKKQAEKKTKEVLTR 422 (548)
Q Consensus 349 ~~~l~~vadrIi~L------~~G~i~~~~g~y~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~ 422 (548)
++++. .||+|++| ++|++++ .|+++++...... +. .
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv~-~G~~~e~~~~~~s------------------lt-------~----------- 607 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVVA-AGTPEEVMNDPNS------------------LT-------G----------- 607 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEEE-EECTTTTTTCTTC------------------TT-------H-----------
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEEE-ecCHHHHHhhhHH------------------HH-------H-----------
Confidence 99986 69999999 6888874 6888765321000 00 0
Q ss_pred HHHHHHHHHhhhcccCCCcccccCCccceeeeecCCCC-CCCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecC
Q psy11936 423 KQEKNKSKLQKADEDQGPTELIQKPREYVVKFSFPDPP-PLQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKP 500 (548)
Q Consensus 423 ~~~k~~~k~~~~~~~~~~~e~~~~~~~~~~~~~f~~~~-~~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~ 500 (548)
+ .+.. .. .. .+|... ..+.++|++++++. ..|+||||.. .|+.+.|.|+
T Consensus 608 ---~---~l~g--~~--~~-------------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~ 658 (972)
T 2r6f_A 608 ---Q---YLSG--KK--FI-------------PIPAERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGV 658 (972)
T ss_dssp ---H---HHHT--SS--CC-------------CCCSSCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBC
T ss_pred ---H---HhcC--Cc--cc-------------cCccccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcC
Confidence 0 0000 00 00 011111 11347899999863 3699999986 9999999998
Q ss_pred c----cceeeccC-CCC-------CCCCCC---eeeccce-eeeeeecccee
Q psy11936 501 R----EYVVKFSF-PDP-------PPLQPP---ILGLHNV-TFAYEGMKPLL 536 (548)
Q Consensus 501 ~----~~~~~~~~-~~~-------~~~~~~---~~~~~n~-~~~y~~~~~~~ 536 (548)
| |||+++|+ |.+ .+..|. +.+.+++ .+-|+.|+|+-
T Consensus 659 nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig 710 (972)
T 2r6f_A 659 SGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIG 710 (972)
T ss_dssp TTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSC
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccc
Confidence 6 89999874 221 123343 2232222 35678888863
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-24 Score=222.12 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=112.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE-eceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY-CEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~-~~q~i~~~~~~~~~~~~ 224 (548)
.|+++||+|+|+ ..+|+++||+|++|++++|+||||||||||+++|+|.. +|.|.. ..|.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~t------ 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLAS------ 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGG------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCcccccccc------
Confidence 377889999998 77999999999999999999999999999999999852 566643 22221110000
Q ss_pred HhhHHHHHHHHHHHHHh-hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLE-AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
... +..+... ....+.+.+..+ +.. .++ +..||||||||
T Consensus 169 --------------i~~~ni~~~~~-------------------~~~~~~~~i~~~-L~~-gld--g~~LSgGqkQR--- 208 (305)
T 2v9p_A 169 --------------LADTRAALVDD-------------------ATHACWRYFDTY-LRN-ALD--GYPVSIDRKHK--- 208 (305)
T ss_dssp --------------GTTCSCEEEEE-------------------ECHHHHHHHHHT-TTG-GGG--TCCEECCCSSC---
T ss_pred --------------HHHHhhccCcc-------------------ccHHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---
Confidence 000 0000000 001223344443 332 223 67999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|+++. .|+.+.+
T Consensus 209 ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~-~g~~~el 264 (305)
T 2v9p_A 209 AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPF-NITDADW 264 (305)
T ss_dssp CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCC-CCCHHHH
T ss_pred HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEE-eCCHHHH
Confidence 999999999999 99999988776642 29998876 579999 999999985 5777665
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-23 Score=222.27 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=115.2
Q ss_pred ceeeEeeeEEEECCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh
Q psy11936 159 NDLFVNANLLIANGR--------------------RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT 218 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge--------------------~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~ 218 (548)
+.+|++|||+|.+|+ ++||+||||||||||+|+|+|. ..|..|.|.+.+.+.....
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl--~~p~~GsI~~~g~~~t~~~-- 111 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI--GNEEEGAAKTGVVEVTMER-- 111 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC--CTTSTTSCCCCC----CCC--
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC--CCccCceEEECCeecceeE--
Confidence 458999999999999 9999999999999999999985 3556666655543321000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHH--
Q psy11936 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGG-- 296 (548)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG-- 296 (548)
...+. . .....+..++. .++. ...++.++|+.+++... +..+. ||||
T Consensus 112 -------~v~q~-------~----~~~~ltv~D~~--------g~~~--~~~~~~~~L~~~~L~~~--~~~~~-lS~G~~ 160 (413)
T 1tq4_A 112 -------HPYKH-------P----NIPNVVFWDLP--------GIGS--TNFPPDTYLEKMKFYEY--DFFII-ISATRF 160 (413)
T ss_dssp -------EEEEC-------S----SCTTEEEEECC--------CGGG--SSCCHHHHHHHTTGGGC--SEEEE-EESSCC
T ss_pred -------Eeccc-------c----ccCCeeehHhh--------cccc--hHHHHHHHHHHcCCCcc--CCeEE-eCCCCc
Confidence 00000 0 00000000000 0000 12346778888988642 34444 9999
Q ss_pred HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCeEEEEecCHHH--H
Q psy11936 297 WRMRVSLARALYI----------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW------------KKTLLIVSHDQSF--L 352 (548)
Q Consensus 297 qkqRvaLAraL~~----------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~------------~~TvIiVSHD~~~--l 352 (548)
|+||++||++|+. +|++|||||||++||+.++..+.+.|+++ ..+|+++||++.. +
T Consensus 161 ~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 161 KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred cHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 9999999999999 99999999999999998877776666543 2468889999887 8
Q ss_pred HhhcCEEE
Q psy11936 353 DNVCNEII 360 (548)
Q Consensus 353 ~~vadrIi 360 (548)
+.+||+|.
T Consensus 241 e~L~d~I~ 248 (413)
T 1tq4_A 241 PVLMDKLI 248 (413)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999885
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-21 Score=212.45 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=108.1
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeE-EEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID-ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD 244 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~-I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (548)
+..|.+|++++|+|+||||||||+++|+|... +.... +++..++. .. .+ ....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee~----~~---~l----------~~~~------- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES----RA---QL----------LRNA------- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC----HH---HH----------HHHH-------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeCC----HH---HH----------HHHH-------
Confidence 45899999999999999999999999998532 22222 34443321 00 00 0000
Q ss_pred CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy11936 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324 (548)
Q Consensus 245 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD 324 (548)
..++. . +.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++|||| ||++||
T Consensus 329 ----------------~~~g~-~----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld 384 (525)
T 1tf7_A 329 ----------------YSWGM-D----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALA 384 (525)
T ss_dssp ----------------HTTSC-C----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHT
T ss_pred ----------------HHcCC-C----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHH
Confidence 00110 0 011 1234443 2346778899999999999999999999999999 999999
Q ss_pred HH-----HHHHHHHHH---hhcCCeEEEEecCH----------HHHHhhcCEEEEEeCCE
Q psy11936 325 LN-----AVIWLDNYL---QGWKKTLLIVSHDQ----------SFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 325 ~~-----s~~~L~~~L---~~~~~TvIiVSHD~----------~~l~~vadrIi~L~~G~ 366 (548)
.. .+..+.+++ ++.+.|||+||||. .++..+||+|++|++|+
T Consensus 385 ~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 385 RGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 98 777665554 45578999999999 78888999999998876
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-22 Score=219.73 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=113.9
Q ss_pred EEEEeEEEEeCCceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRH--IASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLkl--LaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
++.+++...+++..+|+++|| .|.+|++++|+||||||||||+++ ++|. ..|+.|.|.+.+.+.. .....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--~~~~~g~i~v~g~~~~----~~~~~- 85 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--IEFDEPGVFVTFEETP----QDIIK- 85 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSCH----HHHHH-
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEeCCH----HHHHH-
Confidence 334456655667889999999 999999999999999999999999 6774 3456788888776521 11100
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
.....++..+........+ ....... ....++|..+++. ...++.+..|||||
T Consensus 86 ---~~~~~g~~~q~~~~~~~l~----------------~~~~~~~-~~~~~~l~~~~l~-~~~~~~~~~LS~g~------ 138 (525)
T 1tf7_A 86 ---NARSFGWDLAKLVDEGKLF----------------ILDASPD-PEGQEVVGGFDLS-ALIERINYAIQKYR------ 138 (525)
T ss_dssp ---HHGGGTCCHHHHHHTTSEE----------------EEECCCC-SSCCSCCSSHHHH-HHHHHHHHHHHHHT------
T ss_pred ---HHHHcCCChHHhhccCcEE----------------EEecCcc-cchhhhhcccCHH-HHHHHHHHHHHHcC------
Confidence 0011111111110000000 0000000 0011233344443 24566777788775
Q ss_pred HHHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHHhh---cCCeEEEEecCHHHH---------HhhcCEEEEEeCCE
Q psy11936 304 ARALYIEPTLLLLDEPTNH-----LDLNAVIWLDNYLQG---WKKTLLIVSHDQSFL---------DNVCNEIIHLDQQK 366 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~-----LD~~s~~~L~~~L~~---~~~TvIiVSHD~~~l---------~~vadrIi~L~~G~ 366 (548)
|++|+|||||+. ||+..+..|.++++. .+.|||+|||+++.+ ..+||+|++|++|.
T Consensus 139 -------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 139 -------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp -------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred -------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 789999999985 588888777777654 478999999999884 56699999999843
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-23 Score=199.43 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=60.7
Q ss_pred HHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHhhc----CCeEEEEec
Q psy11936 276 LAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL----DLNAVIWLDNYLQGW----KKTLLIVSH 347 (548)
Q Consensus 276 L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~L----D~~s~~~L~~~L~~~----~~TvIiVSH 347 (548)
++.+|+. ...++++..|| +|+.+|++++|||||++| |+..+..+.+++.++ +.|+|+|||
T Consensus 119 l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH 186 (207)
T 1znw_A 119 VDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR 186 (207)
T ss_dssp CCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred eCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence 3344553 34567788888 999999999999999998 677877777776543 579999999
Q ss_pred CHHHHHhhcCEEEEEe
Q psy11936 348 DQSFLDNVCNEIIHLD 363 (548)
Q Consensus 348 D~~~l~~vadrIi~L~ 363 (548)
|++++..+||+|++|.
T Consensus 187 dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 187 RLESACAELVSLLVGT 202 (207)
T ss_dssp SHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999984
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=164.66 Aligned_cols=81 Identities=31% Similarity=0.447 Sum_probs=72.3
Q ss_pred hhcccCCCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhc
Q psy11936 286 QDRATKNFSGGWRMRVSLA------RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 286 ~~~~~~~LSGGqkqRvaLA------raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~va 356 (548)
.++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.++|..+ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999999876 469999999995 56799
Q ss_pred CEEEEE--eCCEE
Q psy11936 357 NEIIHL--DQQKL 367 (548)
Q Consensus 357 drIi~L--~~G~i 367 (548)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56644
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-20 Score=215.51 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=107.9
Q ss_pred ccEEEEe-----EEEEe-CCceeeEeeeEEEEC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 145 VDIKVEN-----FSISA-KGNDLFVNANLLIAN-------GRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 145 ~~I~l~n-----ls~~y-~~~~iL~~vsl~I~~-------Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |.......-|. |..+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~--~Vpq~ 825 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC--YVPAE 825 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC--CEESS
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE--EeccC
Confidence 3699999 99999 677899999999987 999999999999999999999 74211000000 11111
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
... .+ +. ..++..+|+.+ ......+
T Consensus 826 ~~~--l~------------------------------v~----------------------d~I~~rig~~d-~~~~~~s 850 (1022)
T 2o8b_B 826 VCR--LT------------------------------PI----------------------DRVFTRLGASD-RIMSGES 850 (1022)
T ss_dssp EEE--EC------------------------------CC----------------------SBEEEECC----------C
T ss_pred cCC--CC------------------------------HH----------------------HHHHHHcCCHH-HHhhchh
Confidence 000 00 00 00112234332 2233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HH---HHHHHHhhc-CCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNA-VI---WLDNYLQGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s-~~---~L~~~L~~~-~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
++|+|+++ +++|++++.+|+||||||||+|+|+.. .. .+.+.|.+. +.++|++|||.+++..+||+++++ +|+
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEE
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCe
Confidence 78888775 999999999999999999999999865 23 233444433 789999999999999999999887 477
Q ss_pred EEE
Q psy11936 367 LYY 369 (548)
Q Consensus 367 i~~ 369 (548)
+..
T Consensus 929 ~~~ 931 (1022)
T 2o8b_B 929 MAC 931 (1022)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=184.47 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=109.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
..+|+++++.|.+|++++|+||||||||||+++|+|.. .+..| .+.|.+.+.. ...+.. + +....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e~~---~~~~~~-------r--~~~~~ 87 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLEES---VEETAE-------D--LIGLH 87 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESSSC---HHHHHH-------H--HHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCcCC---HHHHHH-------H--HHHHH
Confidence 35799999999999999999999999999999999852 33445 6777665431 111100 0 00000
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH-HHHHHHHHHHccCCCEEEE
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW-RMRVSLARALYIEPTLLLL 316 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-kqRvaLAraL~~~P~lLLL 316 (548)
. . ........+.. ..+ ........+..+|...++. ....+..+|.++ +||+. |+++..+|++|||
T Consensus 88 ~---~--~~~~~~~~l~~--~~~---~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llil 153 (296)
T 1cr0_A 88 N---R--VRLRQSDSLKR--EII---ENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIIL 153 (296)
T ss_dssp T---T--CCGGGCHHHHH--HHH---HHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEE
T ss_pred c---C--CChhhcccccc--CCC---CHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEE
Confidence 0 0 00000000000 001 0111222344444433432 123346789999 56666 9999999999999
Q ss_pred eCCCC---C---CCH-HHHHHHHHHHh----hcCCeEEEEecCH--H--------------------HHHhhcCEEEEEe
Q psy11936 317 DEPTN---H---LDL-NAVIWLDNYLQ----GWKKTLLIVSHDQ--S--------------------FLDNVCNEIIHLD 363 (548)
Q Consensus 317 DEPTn---~---LD~-~s~~~L~~~L~----~~~~TvIiVSHD~--~--------------------~l~~vadrIi~L~ 363 (548)
||||+ + +|. ..+..+.+.|+ +++.|||+|||+. + .+..+||+|++|+
T Consensus 154 Dept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~ 233 (296)
T 1cr0_A 154 DHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 233 (296)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE
T ss_pred cCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe
Confidence 99999 4 454 55555665554 4578999999995 5 7788999999998
Q ss_pred CCEE
Q psy11936 364 QQKL 367 (548)
Q Consensus 364 ~G~i 367 (548)
+|+.
T Consensus 234 ~~~~ 237 (296)
T 1cr0_A 234 RNQQ 237 (296)
T ss_dssp EC--
T ss_pred cCcc
Confidence 8864
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-21 Score=200.67 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=123.4
Q ss_pred cEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.++++++++.|+ +..+++++ |+|.+|+++||+|||||||||||++|+|. ..|..|.+.+.++.. ..+...+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--~~~~~g~i~~~G~~~-----~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--ASADIIVLALIGERG-----REVNEFL 116 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCH-----HHHHHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--CCCCEEEEEEecccH-----HHHHHHH
Confidence 578899999997 77899999 99999999999999999999999999985 356677777766531 1111111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.. ... ..+. .........+......+...+..+ .+.+.+...+-.-...-..+..||+|| |||+||
T Consensus 117 ~~-~~~-~~~~-~~v~~~~~~~~~~~~r~~~~~~~~----------~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 117 AL-LPQ-STLS-KCVLVVTTSDRPALERMKAAFTAT----------TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp TT-SCH-HHHT-TEEEEEECTTSCHHHHHHHHHHHH----------HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred Hh-hhh-hhhh-ceEEEEECCCCCHHHHHHHHHHHH----------HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 11 000 0000 000000000111111111110000 001111111110000014578899999 899999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----C-----eEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 305 RALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----K-----TLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 305 raL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~-----TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
+.+|++ |++||+.....+.+++.+.+ . ||+++|||++ ..+||++++|.+|+++..
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 678877 99999999999999998752 3 8999999998 678999999999999864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=210.16 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred cEEEEeEEEEe-----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC------CCCCCCCeE-EEEeceeec
Q psy11936 146 DIKVENFSISA-----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR------DLKVPPNID-ILYCEQEVV 213 (548)
Q Consensus 146 ~I~l~nls~~y-----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~------~~~~~~~g~-I~~~~q~i~ 213 (548)
.|.+.+...-+ ++..+++|++|++.+|++++|+||||||||||||+|++. +...|.... +.+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~----- 705 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIV----- 705 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECC-----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHH-----
Confidence 36666655433 245689999999999999999999999999999999421 011221111 0000
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
..++..+|+.+ .....+
T Consensus 706 -----------------------------------------------------------d~i~~~ig~~d----~l~~~l 722 (934)
T 3thx_A 706 -----------------------------------------------------------DCILARVGAGD----SQLKGV 722 (934)
T ss_dssp -----------------------------------------------------------SEEEEECC-------------
T ss_pred -----------------------------------------------------------HHHHHhcCchh----hHHHhH
Confidence 01223334432 234568
Q ss_pred CHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 294 SGGWRMRVSLARAL--YIEPTLLLLDEPTNHLDLNAVIWL----DNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 294 SGGqkqRvaLAraL--~~~P~lLLLDEPTn~LD~~s~~~L----~~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+|+.+++.+|++| +.+|+||||||||+|||+.....+ .+.+.+ .+.|+|++|||.++. .+||++..|.+|+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~ 801 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLH 801 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeE
Confidence 88888888888888 999999999999999999765443 444544 478999999997765 6899998888888
Q ss_pred EEE
Q psy11936 367 LYY 369 (548)
Q Consensus 367 i~~ 369 (548)
+..
T Consensus 802 v~~ 804 (934)
T 3thx_A 802 VTA 804 (934)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-20 Score=190.63 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=119.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh-hHHHHHHHHHHHHH
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA-DVKRTELLAECAKL 240 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 240 (548)
+..+||++.+|++++|+||||||||||+++|+|. ..|.+|+|.+.+.++.... ...+.... ......++.+.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~g~V~l~g~d~~r~~--a~~ql~~~~~~~~i~~v~q~--- 162 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAA--ASDQLEIWAERTGCEIVVAE--- 162 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHH--HHHHHHHHHHHHTCEEECCC---
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEEeecccchh--HHHHHHHHHHhcCceEEEec---
Confidence 4568899999999999999999999999999985 3466789998887653211 00000000 00000000000
Q ss_pred hh-hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEe
Q psy11936 241 EA-ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLD 317 (548)
Q Consensus 241 ~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLD 317 (548)
.. ..+..++.+++... ...+ .. ..+++.+|+.. ..++++.+|| +||++|||||+.+|+ +|+||
T Consensus 163 ~~~~~~~~~v~e~l~~~----~~~~-~d-----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 163 GDKAKAATVLSKAVKRG----KEEG-YD-----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp --CCCHHHHHHHHHHHH----HHTT-CS-----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred CCccCHHHHHHHHHHHH----HHcC-Cc-----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 00 00111222222110 0111 10 12456678763 4567888999 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCeEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy11936 318 EPTNHLDLNAVIWLDNYLQGWKKTLLIVSH---------DQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 318 EPTn~LD~~s~~~L~~~L~~~~~TvIiVSH---------D~~~l~~vadrIi~L~~G~i 367 (548)
||++||+..+. ..+-...+.|+|++|| .++.+..++..|.++..|+.
T Consensus 229 -ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 -GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999987653 3444456889999999 67778788899999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-21 Score=202.79 Aligned_cols=133 Identities=19% Similarity=0.146 Sum_probs=97.8
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.+++++||.|.+|++++|+|||||||||||++|+|. ..|..|.|.+.+........
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~i~~~~e~~~~~---------------------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--IPKEERIISIEDTEEIVFKH---------------------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--SCTTSCEEEEESSCCCCCSS----------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--CcCCCcEEEECCeecccccc----------------------
Confidence 478999999999999999999999999999999985 35677888876642110000
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEP 319 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEP 319 (548)
. . ..+++ +.. |||+||++||+||..+|++||||||
T Consensus 215 -----~--------------------~----------~~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 215 -----H--------------------K----------NYTQL--------FFG--GNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp -----C--------------------S----------SEEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred -----c--------------------h----------hEEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCC
Confidence 0 0 00000 001 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 320 TNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 320 Tn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
|+. +....| ..+..-+.|+|++||+.+ +...|||+++|.+|.
T Consensus 250 ~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 250 RSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred ChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 982 333322 233322348999999999 667899999998775
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=185.52 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=67.0
Q ss_pred cccCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---CeEEEEecCHHHHHhhcCEEE
Q psy11936 288 RATKNFSGGWRMRVSLARALY----IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~----~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~---~TvIiVSHD~~~l~~vadrIi 360 (548)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.++|..+. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345669999999999999999 5899999999999999999999999998763 5999999998776 5799999
Q ss_pred EEe
Q psy11936 361 HLD 363 (548)
Q Consensus 361 ~L~ 363 (548)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-22 Score=196.53 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=91.5
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchh-HHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT-AVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~-~~~~~~~~~~~~~~l~~~~ 237 (548)
..-|+||||+|.+|+++||+||||||||||+++|+|.. | |.|.+ +..+...... .....+...++....+...
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 35799999999999999999999999999999999852 3 56665 4433211000 0000000001111111111
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH-----HHHHccCCC
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL-----ARALYIEPT 312 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL-----AraL~~~P~ 312 (548)
.......+..+.. . ...+ .....+.+++....+. ..+ ..|||||+||++| |++|+.+|+
T Consensus 84 ~~~~~~l~~~~~~-------~--~~~g--~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYA-------N--NFYG--TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEET-------T--EEEE--EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcc-------c--ccCC--CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 0000000000000 0 0000 1123455566654432 112 5799999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----------CCeEEEEecCHHHHHhhcCEE
Q psy11936 313 LLLLDEPTNHLDLNAVIWLDNYLQGW----------KKTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 313 lLLLDEPTn~LD~~s~~~L~~~L~~~----------~~TvIiVSHD~~~l~~vadrI 359 (548)
+++|||||+++|..+...+.+.|... ..+.|+|+||.+.+...+++|
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 99999999999987766666655432 234455555555544444433
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-19 Score=206.98 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=97.7
Q ss_pred cEEEEeEEEEe-------CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC------CCCCCC-eEEEEecee
Q psy11936 146 DIKVENFSISA-------KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD------LKVPPN-IDILYCEQE 211 (548)
Q Consensus 146 ~I~l~nls~~y-------~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~------~~~~~~-g~I~~~~q~ 211 (548)
.|.+++...-+ ++..+++|+||++.+|++++|+||||||||||||+|++.. ...|.. ..+.+.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~--- 716 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV--- 716 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence 46666655432 3467899999999999999999999999999999997521 011111 001000
Q ss_pred eccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccC
Q psy11936 212 VVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATK 291 (548)
Q Consensus 212 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 291 (548)
..++..+|+.+ ......+
T Consensus 717 -------------------------------------------------------------d~i~~~ig~~d-~l~~~~s 734 (918)
T 3thx_B 717 -------------------------------------------------------------DGIFTRMGAAD-NIYKGRS 734 (918)
T ss_dssp -------------------------------------------------------------SEEEEEC-----------C
T ss_pred -------------------------------------------------------------HHHHHhCChHH-HHHHhHH
Confidence 01222334332 2345678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHh-hcCCeEEEEecCHHHHHhhcC
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLD----NYLQ-GWKKTLLIVSHDQSFLDNVCN 357 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~----~~L~-~~~~TvIiVSHD~~~l~~vad 357 (548)
+||+||++++.|+++ +.+|+||||||||+|||+.....+. +.+. ..+.|+|+||||.+++ .+|+
T Consensus 735 tfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 735 TFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp CHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred HhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHh
Confidence 899999999999999 8999999999999999997655443 3332 3478999999998775 3444
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-22 Score=205.09 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=107.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEE-----------------------EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC
Q psy11936 146 DIKVENFSISAKGNDLFVNANLL-----------------------IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~-----------------------I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~ 202 (548)
.|+++||++.|+ +++++++|. +.+|+++||+||||||||||+++|+|...+..+.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 488899999995 566776664 8899999999999999999999999853222222
Q ss_pred eEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC
Q psy11936 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS 282 (548)
Q Consensus 203 g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 282 (548)
..+.+..|+......+.... .. +.. .. ..........+.++|..++ .
T Consensus 121 ~~v~~v~qd~~~~~~t~~e~--------------~~-~~~-~~----------------g~~~~~d~~~~~~~L~~l~-~ 167 (312)
T 3aez_A 121 PRVDLVTTDGFLYPNAELQR--------------RN-LMH-RK----------------GFPESYNRRALMRFVTSVK-S 167 (312)
T ss_dssp CCEEEEEGGGGBCCHHHHHH--------------TT-CTT-CT----------------TSGGGBCHHHHHHHHHHHH-T
T ss_pred CeEEEEecCccCCcccHHHH--------------HH-HHH-hc----------------CCChHHHHHHHHHHHHHhC-C
Confidence 34666666543222111100 00 000 00 0000112345566777766 3
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHH
Q psy11936 283 RAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 283 ~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~ 351 (548)
. ..+.++..|||||+|||++|++++.+|+|||||||+..+|+.. ..+..+-..+|+|+|+.+.
T Consensus 168 ~-~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~ 230 (312)
T 3aez_A 168 G-SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIED 230 (312)
T ss_dssp T-CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHH
T ss_pred C-cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHH
Confidence 2 2356788999999999999999999999999999999998521 1122222355777777655
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-19 Score=186.92 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh-hHHHHHHHHHHHHHh
Q psy11936 163 VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA-DVKRTELLAECAKLE 241 (548)
Q Consensus 163 ~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 241 (548)
..+||++.+|++++||||||||||||+++|+|. ..+.+|+|.+.+.++.... ...+.... ......++.+. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--l~~~~G~V~l~g~D~~r~~--a~eql~~~~~r~~i~~v~q~---~ 220 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--LKNEGTKVLMAAGDTFRAA--ASDQLEIWAERTGCEIVVAE---G 220 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEECCCCSCHH--HHHHHHHHHHHHTCEEECCS---S
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh--ccccCCEEEEecccccccc--hhHHHHHHHHhcCeEEEEec---c
Confidence 468899999999999999999999999999985 3466789998887653211 00000000 00000000000 0
Q ss_pred h-hcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeC
Q psy11936 242 A-ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDE 318 (548)
Q Consensus 242 ~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDE 318 (548)
. ..+..++.+++... . ..+ .. ..+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+||
T Consensus 221 ~~~~p~~tv~e~l~~~---~-~~~-~d-----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 221 DKAKAATVLSKAVKRG---K-EEG-YD-----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp SSCCHHHHHHHHHHHH---H-HTT-CS-----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred cccChhhhHHHHHHHH---H-hCC-CH-----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 0 00011222222110 0 011 11 12456677763 4567788999 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCeEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSH---------DQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~~~TvIiVSH---------D~~~l~~vadrIi~L~~G~i 367 (548)
||++||+..+. ..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 286 pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987653 3444456889999999 56777778899999998864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-20 Score=199.20 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=123.0
Q ss_pred ccEEEEeEEEEeC-CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 145 VDIKVENFSISAK-GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 145 ~~I~l~nls~~y~-~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
..++++++++.|+ +..+|+++ |+|.+|+++||+|||||||||||++|+|. ..+..|.|.+.++.. ..+...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--~~~~~G~i~~~G~r~-----~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--TRADVIVVGLIGERG-----REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--SCCSEEEEEEESCCH-----HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--cCCCeEEEEEeceec-----HHHHHH
Confidence 3578899999997 67899999 99999999999999999999999999985 457778888877621 001110
Q ss_pred HHhhHHHHHHHHHHHHHhhhcC-Ch------hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCC-hhhhhcccCCCCH
Q psy11936 224 LKADVKRTELLAECAKLEAADF-SS------EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFS-RAMQDRATKNFSG 295 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~-~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSG 295 (548)
....... ..+.. ....... +. ++.++.....+.+. ..+-. ..+. ..+..|||
T Consensus 202 ~~~~~~~-~~l~r--~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~----------------~~~~~v~~~l-d~l~~lS~ 261 (438)
T 2dpy_A 202 IENILGP-DGRAR--SVVIAAPADVSPLLRMQGAAYATRIAEDFR----------------DRGQHVLLIM-DSLTRYAM 261 (438)
T ss_dssp HHTTTHH-HHHHT--EEEEEECTTSCHHHHHHHHHHHHHHHHHHH----------------TTTCEEEEEE-ECHHHHHH
T ss_pred HHhhccc-cccCc--eEEEEECCCCCHHHHHHHHHHHHHHHHHHH----------------hCCCCHHHHH-HhHHHHHH
Confidence 0000000 00000 0000000 01 11111111111111 00100 0111 22567999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------eEEEEecCHHHHHhhcCEEEEEe
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK------K------TLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~------~------TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
|| |||+|| +.+|++ |++||+.....+.+++.++. + ||+++|||++ ..+||++++|.
T Consensus 262 g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~ 329 (438)
T 2dpy_A 262 AQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAIL 329 (438)
T ss_dssp HH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHS
T ss_pred HH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEe
Confidence 99 999999 888888 99999999999999997652 3 8999999998 67899999999
Q ss_pred CCEEEEE
Q psy11936 364 QQKLYYY 370 (548)
Q Consensus 364 ~G~i~~~ 370 (548)
+|+++..
T Consensus 330 dG~Ivl~ 336 (438)
T 2dpy_A 330 DGHIVLS 336 (438)
T ss_dssp SEEEEEC
T ss_pred CcEEEEe
Confidence 9999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=163.89 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCHHHHH-HHHHHHHHcc-------CCCEEEEeCCCCCCCHH----------------HHHHHHHHHhhcCCeEEEEec-
Q psy11936 293 FSGGWRM-RVSLARALYI-------EPTLLLLDEPTNHLDLN----------------AVIWLDNYLQGWKKTLLIVSH- 347 (548)
Q Consensus 293 LSGGqkq-RvaLAraL~~-------~P~lLLLDEPTn~LD~~----------------s~~~L~~~L~~~~~TvIiVSH- 347 (548)
+++++++ .+..++.++. +|++|+|||||++||+. ....|.++.++.+.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4444433 3555555554 99999999999999983 122333444456889999999
Q ss_pred ---CHHHHHhhcCEEEEEeCC
Q psy11936 348 ---DQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 348 ---D~~~l~~vadrIi~L~~G 365 (548)
+-..+..+||++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 555588999999999864
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-18 Score=192.14 Aligned_cols=146 Identities=21% Similarity=0.167 Sum_probs=100.1
Q ss_pred cEEEEeEEEEe---CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISA---KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y---~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|.+++...-. ++..+++|+||+ |++++|+||||||||||||+|+|... .+..|.+. ... ..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~-~~~~G~~v--pa~----~~----- 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL-LAQVGSFV--PAE----EA----- 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH-HHTTTCCB--SSS----EE-----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh-hcccCcee--ehh----cc-----
Confidence 47777774433 456789999999 99999999999999999999997421 12222110 000 00
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHH
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRva 302 (548)
..+++ + .++..++..+ .....+|+|+++++.
T Consensus 615 -------~i~~v----------~----------------------------~i~~~~~~~d----~l~~g~S~~~~e~~~ 645 (765)
T 1ewq_A 615 -------HLPLF----------D----------------------------GIYTRIGASD----DLAGGKSTFMVEMEE 645 (765)
T ss_dssp -------EECCC----------S----------------------------EEEEECCC----------CCSHHHHHHHH
T ss_pred -------ceeeH----------H----------------------------HhhccCCHHH----HHHhcccHHHHHHHH
Confidence 00000 0 0011122221 112358999999999
Q ss_pred HHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHhhcCCeEEEEecCHHHHHhhc
Q psy11936 303 LARAL--YIEPTLLLLDEP---TNHLDLNAVI-WLDNYLQGWKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 303 LAraL--~~~P~lLLLDEP---Tn~LD~~s~~-~L~~~L~~~~~TvIiVSHD~~~l~~va 356 (548)
+|++| +.+|+||||||| |++||..+.. .+.++|.+.+.|+|++|||.+++. +|
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99999 999999999999 9999998864 588888877889999999998864 44
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=162.78 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=103.1
Q ss_pred ceeeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHH
Q psy11936 159 NDLFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAEC 237 (548)
Q Consensus 159 ~~iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (548)
...|+++.+ .|.+|++++|+||||||||||+++|++.. .+.++.+.|.+.+.. ...+... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~~---~~~~~~~-------------~ 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEES---RDSIIRQ-------------A 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSSC---HHHHHHH-------------H
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcccC---HHHHHHH-------------H
Confidence 346788877 79999999999999999999999999742 234566777654321 1110000 0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEE
Q psy11936 238 AKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLL 315 (548)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLL 315 (548)
.... ..+..... ..+..... +...++ . .......|.++.++...+.+...+|+ +||
T Consensus 71 ~~~~-~~~~~~~~-------~~~~~~~~---------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 128 (235)
T 2w0m_A 71 KQFN-WDFEEYIE-------KKLIIIDA---------LMKEKE-D----QWSLVNLTPEELVNKVIEAKQKLGYGKARLV 128 (235)
T ss_dssp HHTT-CCCGGGBT-------TTEEEEEC---------CC-----C----TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHhc-chHHHHhh-------CCEEEEec---------cccccC-c----eeeecCCCHHHHHHHHHHHHHhhCCCceEEE
Confidence 0000 00000000 00000000 000001 0 01123459999999988888888999 999
Q ss_pred EeCCCCCC--CHHHHHHHHHHHh----hcCCeEEEEecCH--------HHHHhhcCEEEEEeCCE
Q psy11936 316 LDEPTNHL--DLNAVIWLDNYLQ----GWKKTLLIVSHDQ--------SFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 316 LDEPTn~L--D~~s~~~L~~~L~----~~~~TvIiVSHD~--------~~l~~vadrIi~L~~G~ 366 (548)
|||||+.+ |+.....+.+.|. +.+.|||++||+. ..+..+||+|++|+...
T Consensus 129 lDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 129 IDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred EECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99999888 9866665555554 4578999999999 55888999999997543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-19 Score=179.97 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=96.9
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-CeEEEEeceeeccCchhHHHHHHHh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-NIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
++++|++. .+|+++| +.+|++++|+|||||||||||++|+|. ..|. +|.|.+.+..+......
T Consensus 7 ~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~-------- 70 (261)
T 2eyu_A 7 EFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKH-------- 70 (261)
T ss_dssp CGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCC--------
T ss_pred ChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCC--------
Confidence 34555542 5899999 899999999999999999999999984 2344 78888877654211000
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
. ... ... ..+|+.. ..| |++||++
T Consensus 71 ----------------~-~~~---------------v~q-----------~~~gl~~-------~~l------~~~la~a 94 (261)
T 2eyu_A 71 ----------------K-KSI---------------VNQ-----------REVGEDT-------KSF------ADALRAA 94 (261)
T ss_dssp ----------------S-SSE---------------EEE-----------EEBTTTB-------SCH------HHHHHHH
T ss_pred ----------------c-cee---------------eeH-----------HHhCCCH-------HHH------HHHHHHH
Confidence 0 000 000 0233321 222 8999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|..+|++||||||| |+.+...+.+.. ..+.+||++||+.+ +..+||++++|
T Consensus 95 L~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 95 LREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 99999999999999 998877666654 34789999999987 44667776544
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-18 Score=169.68 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=86.5
Q ss_pred EeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC-CCCCC--CCeEEEEeceeeccCchhHHHHHHHhhHHHH
Q psy11936 155 SAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR-DLKVP--PNIDILYCEQEVVADDLTAVESVLKADVKRT 231 (548)
Q Consensus 155 ~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~-~~~~~--~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~ 231 (548)
+-++..+|+|+||++.+|+++||+||||||||||+++|+|. +...- ....+.+..++......+... .
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~-~-------- 78 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ-K-------- 78 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHH-H--------
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhH-h--------
Confidence 34567899999999999999999999999999999999984 21100 011233433332111111100 0
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
.... .....+... .......+.+.|..+. .....++..||+||+||+++ ++++.+|
T Consensus 79 --~~~~--~~~~~~~~~----------------~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~ 134 (245)
T 2jeo_A 79 --AKAL--KGQYNFDHP----------------DAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPA 134 (245)
T ss_dssp --HHHH--TTCCCTTSG----------------GGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCC
T ss_pred --hhhh--ccCCCCCCc----------------ccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCC
Confidence 0000 000000000 0001223334444331 22356788999999999988 6888999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC-HHHHHhhcCEE
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD-QSFLDNVCNEI 359 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD-~~~l~~vadrI 359 (548)
+++|||||+..+|.. +.+ -.+.+|+++||+ ......+++++
T Consensus 135 ~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 135 DVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp SEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred CEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 999999999888864 211 136799999997 44445555544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-19 Score=168.23 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=65.6
Q ss_pred hcccCCCCHHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCeEE---EEecCH--HHHHhh
Q psy11936 287 DRATKNFSGGWRMRV-SLAR---ALYIEPTLLLLDE--PTNHLDLNAVIWLDNYLQGWKKTLL---IVSHDQ--SFLDNV 355 (548)
Q Consensus 287 ~~~~~~LSGGqkqRv-aLAr---aL~~~P~lLLLDE--PTn~LD~~s~~~L~~~L~~~~~TvI---iVSHD~--~~l~~v 355 (548)
.++...+||||++++ +|++ |++.+|+|||||| ||+++|......|.+++..+..+|| .||||+ .|++++
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i 157 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI 157 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHH
Confidence 445567999999998 4455 6899999999999 9999999999999999987755553 456997 777776
Q ss_pred cCEEEEEeCCEEEEEc-CCHHH
Q psy11936 356 CNEIIHLDQQKLYYYK-GNYSM 376 (548)
Q Consensus 356 adrIi~L~~G~i~~~~-g~y~~ 376 (548)
|+ +.+|+|+... .|.+.
T Consensus 158 ~~----~~~~~i~~~~~~nr~~ 175 (189)
T 2i3b_A 158 RN----RKDVKVFNVTKENRNH 175 (189)
T ss_dssp HT----TCCSEEEECCSSSGGG
T ss_pred ee----cCCcEEEEeChHhHHH
Confidence 65 4677776543 45443
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=149.19 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=80.3
Q ss_pred hcccCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEE
Q psy11936 287 DRATKNFSGGWRMRVSLARALYI----EPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAraL~~----~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi 360 (548)
.+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|..+ ..++|+|||+...+ .+||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 46678999999999999999974 57999999999999999999999999876 36999999998765 6899998
Q ss_pred EE--eCCEEEEEcCCHHHHHHHH
Q psy11936 361 HL--DQQKLYYYKGNYSMFKKMY 381 (548)
Q Consensus 361 ~L--~~G~i~~~~g~y~~f~~~~ 381 (548)
.+ .+|....+..+++.+.+.+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHHHH
Confidence 55 5888887888887765444
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-19 Score=179.17 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=79.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL 253 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 253 (548)
.+||||||||||||||++|+|. ..|..|.|.+.+.++...... ...+++.+... .....++.+++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~--~~~~~G~i~~~g~~i~~~~~~----------~~i~~v~q~~~---~~~~ltv~d~~ 68 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS--QVSRKASSWNREEKIPKTVEI----------KAIGHVIEEGG---VKMKLTVIDTP 68 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HC------------CCCCCSC----------CEEEESCC-------CCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCCccccCCcccCcceee----------eeeEEEeecCC---CcCCceEEech
Confidence 4899999999999999999985 356778777776654211000 00000000000 00000100000
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy11936 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDN 333 (548)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~ 333 (548)
.. ............+..++. ....+..+.+|||||+|||+||||++. ++||||||++||+.....+.
T Consensus 69 ~~----g~~~~~~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~- 135 (270)
T 3sop_A 69 GF----GDQINNENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMK- 135 (270)
T ss_dssp C------CCSBCTTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHH-
T ss_pred hh----hhhcccHHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHH-
Confidence 00 000001111122333333 234566788999999999999999987 99999999999998855544
Q ss_pred HHhhcCCeEEEEecCHHH
Q psy11936 334 YLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 334 ~L~~~~~TvIiVSHD~~~ 351 (548)
.|... .+||+|.|..+.
T Consensus 136 ~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 136 HLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHTT-SEEEEEETTGGG
T ss_pred HHHhc-CcEEEEEecccc
Confidence 44444 889998887543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=157.36 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=87.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCC---------CCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKV---------PPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~---------~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
.|.+|++++|+||||||||||++.|++. +.. ...+.+.|...+- ....+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e~---~~~~~~-------------~--- 85 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAED---PPTAIH-------------H--- 85 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESSS---CHHHHH-------------H---
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECCC---CHHHHH-------------H---
Confidence 3789999999999999999999999863 111 0123444433211 100000 0
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
.+..++.......+..+++.+++.. ..++++..||+|+.+++ ++++.+|++|||||
T Consensus 86 --------------------r~~~~g~~~~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe 141 (279)
T 1nlf_A 86 --------------------RLHALGAHLSAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDT 141 (279)
T ss_dssp --------------------HHHHHHTTSCHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEEC
T ss_pred --------------------HHHHHHhhcChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECC
Confidence 0000001111223445667777753 35678899999997765 68888999999999
Q ss_pred CCC--CCCHHH---HHHHHHHH----hhcCCeEEEEecCHHHHH
Q psy11936 319 PTN--HLDLNA---VIWLDNYL----QGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 319 PTn--~LD~~s---~~~L~~~L----~~~~~TvIiVSHD~~~l~ 353 (548)
||+ ++|... ...+...| ++.+.|||+|||+.....
T Consensus 142 ~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 142 LRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 999 999732 24444443 455789999999987653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=146.12 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=94.8
Q ss_pred eeEeeeE-EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 161 LFVNANL-LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 161 iL~~vsl-~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
.|+.+.. .|.+|++++|+||||||||||++.|++ ...+.+.|...+... ....+.. +
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~-~~~~~~~----------~------ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGF-SPERLVQ----------M------ 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCC-CHHHHHH----------H------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCC-CHHHHHH----------H------
Confidence 3455544 588999999999999999999999997 223455554432110 0000000 0
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHH--HHHHHHHHHHccC-CCEEEE
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGW--RMRVSLARALYIE-PTLLLL 316 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq--kqRvaLAraL~~~-P~lLLL 316 (548)
....+. .. ..++. +-.+..+|+++ +++++.+++++.+ |++||+
T Consensus 66 --------------------~~~~~~-~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~llii 111 (220)
T 2cvh_A 66 --------------------AETRGL-NP----EEALS---------RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVV 111 (220)
T ss_dssp --------------------HHTTTC-CH----HHHHH---------HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEE
T ss_pred --------------------HHhcCC-Ch----HHHhh---------cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 000000 00 01111 11344566664 5688888899986 999999
Q ss_pred eCCCCCCCHH--------HHHH----HHHHHhhcCCeEEEEecCHH-------------HHHhhcCEEEEEeCC
Q psy11936 317 DEPTNHLDLN--------AVIW----LDNYLQGWKKTLLIVSHDQS-------------FLDNVCNEIIHLDQQ 365 (548)
Q Consensus 317 DEPTn~LD~~--------s~~~----L~~~L~~~~~TvIiVSHD~~-------------~l~~vadrIi~L~~G 365 (548)
||||+.||.. .... |.++.++++.|||+++|... .+..+||.|++|+..
T Consensus 112 D~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 112 DSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp ECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999999962 2222 34444556889999999865 677899999999754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=181.33 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=94.2
Q ss_pred cEEEEeEEEEe-----CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC------CCCCC-eEEEEeceeec
Q psy11936 146 DIKVENFSISA-----KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL------KVPPN-IDILYCEQEVV 213 (548)
Q Consensus 146 ~I~l~nls~~y-----~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~------~~~~~-g~I~~~~q~i~ 213 (548)
.|.+++...-. ++..+++|+||+ .+|++++|+||||||||||||+|+|..+ ..|.. ..+.+..+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH---
Confidence 36666543221 456789999999 9999999999999999999999997411 01110 01111100
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
++..+|..+ ......+++
T Consensus 653 -------------------------------------------------------------i~~~~~~~d-~l~~~~stf 670 (800)
T 1wb9_A 653 -------------------------------------------------------------IFTRVGAAD-DLASGRSTF 670 (800)
T ss_dssp -------------------------------------------------------------EEEEEC------------C
T ss_pred -------------------------------------------------------------HHhhCCHHH-HHHhhhhhh
Confidence 001111111 112223467
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH---HH-HHHHHHHhh-cCCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN---AV-IWLDNYLQG-WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~---s~-~~L~~~L~~-~~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
|+|+++ ++.+..++.+|+||||||||+|+|+. +. ..+.+.+.+ .+.++|++|||.++. .+||++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 877764 45555579999999999998887764 32 334555555 478999999999876 47887644444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-18 Score=177.17 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=73.5
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHH
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVK 229 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~ 229 (548)
.||++.|+++.++++++|+| +|||+||||||||+++|+|.. ..|.+| +.+.+..+.. . ... .......+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~~~g~~~~~-t-~~~-~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD-LYPERV-ISGAAEKIER-T-VQI-EASTVEIE 70 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCC-ccCCCC-cccCCcccCC-c-ceE-eeEEEEec
Confidence 47999999999999999998 999999999999999999852 234444 4333322210 0 000 00000000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHcc
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYI 309 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~ 309 (548)
.. ......++.+.... ..... . ..+...++.. +. ...+.++.++|||+|||+.+|||++
T Consensus 71 -------~~---~~~~~ltv~Dt~g~-~~~~~---~---~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 71 -------ER---GVKLRLTVVDTPGY-GDAIN---C---RDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp -------------CCEEEEEEEEC------------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE-
T ss_pred -------CC---CcccCcchhhhhhh-hhhcC---c---HHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh-
Confidence 00 00000000000000 00000 0 0000011111 11 2345778899999999999999986
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 310 EPTLLLLDEPTNH-LDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 310 ~P~lLLLDEPTn~-LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
||++||||++ ||+.....+..+-...+.++|+++||+.
T Consensus 130 ---ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999986 9998864444432234578899999974
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-17 Score=157.64 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCC---CCCCeEEEEe------c-eeecc-
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLK---VPPNIDILYC------E-QEVVA- 214 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~---~~~~g~I~~~------~-q~i~~- 214 (548)
+|+++||++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.... .|..|.+.+. + ..+..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 478999999997 467777 88999999999999999999999999985310 2333433221 1 11110
Q ss_pred Cchh--HHHHHHHhhHH-HHHHHHHH-HHHhhhc--CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhc
Q psy11936 215 DDLT--AVESVLKADVK-RTELLAEC-AKLEAAD--FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDR 288 (548)
Q Consensus 215 ~~~~--~~~~~~~~~~~-~~~l~~~~-~~~~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 288 (548)
.+.. .........+. ......+. ....... .+.. .........+..++...++.......
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIR--------------HPLKDLDQQMIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETT--------------SCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECC--------------CCCchhHHHHHHHHHHcCCCeEEEEe
Confidence 0000 00000000000 00000000 0000000 0000 00011122345566677776433456
Q ss_pred ccCCCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy11936 289 ATKNFSGGWRMR-VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 289 ~~~~LSGGqkqR-vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~ 338 (548)
++..+|+||+|| +.++++++.+|.++++|||||+||..++..+.++|.++
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 678899999999 89999999999999999999999999988888887653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=166.51 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=69.9
Q ss_pred cccCCC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 288 RATKNF-SGGWRMRVSLARALYIEP--TLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 288 ~~~~~L-SGGqkqRvaLAraL~~~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.++|..+ +.|||+||||+.++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 466778 999999999999999999 999999999999999999999888765 589999999999886 69999999
Q ss_pred eCC
Q psy11936 363 DQQ 365 (548)
Q Consensus 363 ~~G 365 (548)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-18 Score=166.04 Aligned_cols=145 Identities=17% Similarity=0.061 Sum_probs=94.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
..+|+++||+||||||||||+++|+|.. .| .+.+..++.......... ..... ...+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~--~~---~i~~v~~d~~~~~~~~~~-----------~~~~~----~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL--GE---RVALLPMDHYYKDLGHLP-----------LEERL----RVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH--GG---GEEEEEGGGCBCCCTTSC-----------HHHHH----HSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh--CC---CeEEEecCccccCccccc-----------HHHhc----CCCCC--
Confidence 5789999999999999999999999841 11 355555543222110000 00000 00000
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHH----HHHHHHHHHccCCCEEEEeCCCCC--
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWR----MRVSLARALYIEPTLLLLDEPTNH-- 322 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk----qRvaLAraL~~~P~lLLLDEPTn~-- 322 (548)
........++.+++..+++.. ..++++..+|+|++ ||+++|++++.+|.+|++||||++
T Consensus 61 --------------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~ 125 (211)
T 3asz_A 61 --------------HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLM 125 (211)
T ss_dssp --------------SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTC
T ss_pred --------------ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhc
Confidence 000112334555666666653 34668889999974 788999999999999999999999
Q ss_pred -----CCHHHHHHHHHHHhhc----CCeEEEEecCHH
Q psy11936 323 -----LDLNAVIWLDNYLQGW----KKTLLIVSHDQS 350 (548)
Q Consensus 323 -----LD~~s~~~L~~~L~~~----~~TvIiVSHD~~ 350 (548)
||+.....+.+.+.+. +.|+++++|+..
T Consensus 126 d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 126 DLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8988777777766543 679999999853
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-15 Score=155.45 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=86.8
Q ss_pred eeEee-eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCC----eE-EEEeceeeccCchhHHHHHHHhhHHHHHHH
Q psy11936 161 LFVNA-NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN----ID-ILYCEQEVVADDLTAVESVLKADVKRTELL 234 (548)
Q Consensus 161 iL~~v-sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~----g~-I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~ 234 (548)
.|+.+ ++.|.+|++++|+||||||||||+++|++.....|.. |. +++.+.+.. ... +..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~-----------~i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPE-----------RIREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHH-----------HHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHH-----------HHHHH
Confidence 45554 6899999999999999999999999999853223333 56 444433221 000 00011
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc------
Q psy11936 235 AECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY------ 308 (548)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~------ 308 (548)
.+. .... .. .+++.+-+. . ..-|+++.+++.++++++
T Consensus 186 ~q~-----~~~~---------------------~~----~v~~ni~~~-----~--~~~~~~~~~~l~~~~~~~~~lS~G 228 (349)
T 1pzn_A 186 AQN-----RGLD---------------------PD----EVLKHIYVA-----R--AFNSNHQMLLVQQAEDKIKELLNT 228 (349)
T ss_dssp HHT-----TTCC---------------------HH----HHGGGEEEE-----E--CCSHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHH-----cCCC---------------------HH----HHhhCEEEE-----e--cCChHHHHHHHHHHHHHHHHhccc
Confidence 100 0000 00 111111110 0 012577888888888888
Q ss_pred -cCCCEEEEeCCCCCCCHHH------------HHHHHHHH----hhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 309 -IEPTLLLLDEPTNHLDLNA------------VIWLDNYL----QGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 309 -~~P~lLLLDEPTn~LD~~s------------~~~L~~~L----~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
.+|++||+||||++||+.. ...+...| +.++.|||+++|+......++..++....|.+.
T Consensus 229 ~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 229 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp SSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred cCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 6899999999999999851 23333333 345789999999987665444445555556544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-16 Score=164.51 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
+||+||.++|++||||||| |.++...+.+... .+.|||+++|+.+.+ .+|||++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 8888777766643 478999999999988 6799998874
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=147.27 Aligned_cols=75 Identities=32% Similarity=0.476 Sum_probs=67.7
Q ss_pred cccCCCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCE
Q psy11936 288 RATKNFSGGWRMRV------SLARALYIE-PTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 288 ~~~~~LSGGqkqRv------aLAraL~~~-P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadr 358 (548)
.++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.++|..+. .+||+||||.. +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 99999999999999999999999998763 59999999987 5689999
Q ss_pred EEEEe
Q psy11936 359 IIHLD 363 (548)
Q Consensus 359 Ii~L~ 363 (548)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=131.71 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=26.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.+|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999999999984
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-14 Score=154.17 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=84.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece-eeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ-EVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q-~i~~~~~~~~~~~~ 224 (548)
+|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+.++.+.+..... .+.....
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i------- 77 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS------- 77 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEE-------
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeE-------
Confidence 588999999999999999999998 99999999999999999986432232111100000 0000000
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
.+..+.... ....++.++... ..... .......+...+. ..+++++++|++||
T Consensus 78 -------~~v~q~~~~---~~~Ltv~Dt~g~-~~~~~---~~~~~~~i~~~i~-------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 78 -------KVLIKEGGV---QLLLTIVDTPGF-GDAVD---NSNCWQPVIDYID-------------SKFEDYLNAESRVN 130 (418)
T ss_dssp -------ECC---------CEEEEEEECC---------------CHHHHHHHH-------------HHHHHHTTTSCC-C
T ss_pred -------EEEEecCCc---ccceeeeechhh-hhhcc---chhhHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 000000000 000000000000 00000 0000001111111 13456777899999
Q ss_pred HHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCCeEEEEecCHH
Q psy11936 305 RALYIEPT---LLLLDEPT-NHLDLNAVIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 305 raL~~~P~---lLLLDEPT-n~LD~~s~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
|+++.+|+ ||++|||| ++||+....|+..+ .. +.+||+|.|-.+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEccc
Confidence 99999999 99999999 69999887666544 43 577888777544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-14 Score=143.01 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCc-hhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhH
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADD-LTAVESVLKADVKRTELLAECAKLEAADFSSEQ 249 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (548)
+|++++|+||||||||||+++|+|. ..|.+|+|.+.+.++.... ...+...... ....++.+. ....+..++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl--l~~~~g~V~l~g~D~~r~~a~~ql~~~~~~--~~i~~v~q~---~~~~p~~~v 173 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGP---EGTDSAALA 173 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTTTHHHHHHHHH--HTCCEECCC---TTCCHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeecCCChhHHHHHHHHHHh--cCceEEEeC---CCCCHHHHH
Confidence 6899999999999999999999985 3567899999888764322 1111100000 000000000 000000112
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHH
Q psy11936 250 QEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT--LLLLDEPTNHLDLNA 327 (548)
Q Consensus 250 ~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~--lLLLDEPTn~LD~~s 327 (548)
.+++... ... +.+ ..+++..|..+ .....+ +...+||++|||||+.+|+ +|.|| |+++.+..
T Consensus 174 ~~~v~~~--~~~--~~d------~~llDt~G~~~-~~~~~~---~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~- 237 (304)
T 1rj9_A 174 YDAVQAM--KAR--GYD------LLFVDTAGRLH-TKHNLM---EELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL- 237 (304)
T ss_dssp HHHHHHH--HHH--TCS------EEEECCCCCCT-TCHHHH---HHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH-
T ss_pred HHHHHHH--HhC--CCC------EEEecCCCCCC-chHHHH---HHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH-
Confidence 2222110 000 000 01223345432 122333 4445899999999999999 77788 67776533
Q ss_pred HHHHHHHHhhcCCeEEEEecCHH
Q psy11936 328 VIWLDNYLQGWKKTLLIVSHDQS 350 (548)
Q Consensus 328 ~~~L~~~L~~~~~TvIiVSHD~~ 350 (548)
..+..+....+.|+|+|||+..
T Consensus 238 -~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 -EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp -HHHHHHHHHHCCSEEEEECTTS
T ss_pred -HHHHHHHHHcCCcEEEEECCcc
Confidence 3444444556889999999843
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-16 Score=172.37 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=90.0
Q ss_pred cEEEEeEEEEeCCc--eeeEee----------eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGN--DLFVNA----------NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVP-PNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~--~iL~~v----------sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~-~~g~I~~~~q~i 212 (548)
.+.++||++.|+.. ++|+.+ +|+++. +||||||||||||||++|+|. ..| ++|.|.+.+.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl--~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGV--ALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSC--C-------CCCSCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCC--CCCCCCCeEEEcCEEE
Confidence 47788999999753 355444 366654 999999999999999999985 345 688888888775
Q ss_pred ccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHh--CCCChhhhhccc
Q psy11936 213 VADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG--LGFSRAMQDRAT 290 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~--lgl~~~~~~~~~ 290 (548)
......... ......++.++.. ......++.+++.... ..+.. .++.
T Consensus 85 ~~~~~~~~~----~~~~~i~~v~Q~~---~l~~~~tv~e~i~~~~----------------~~~~~~~~~~s-------- 133 (608)
T 3szr_A 85 KLKKLVNED----KWRGKVSYQDYEI---EISDASEVEKEINKAQ----------------NAIAGEGMGIS-------- 133 (608)
T ss_dssp EEEECSSSS----CCEEEESCC---C---CCCCHHHHHTTHHHHH----------------HHHHCSSSCCC--------
T ss_pred EEecCCccc----cceeEEeeecccc---cCCCHHHHHHHHHHHH----------------HHhcCCccccc--------
Confidence 221100000 0000001111100 0011112222221110 01111 1111
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCeEEEEecCHHHH-------
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEP------TNHLDLNAVIWLDNYLQGW-----KKTLLIVSHDQSFL------- 352 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEP------Tn~LD~~s~~~L~~~L~~~-----~~TvIiVSHD~~~l------- 352 (548)
.+++.++.+....|+++|+||| |++||+.....+.+++..+ ..+++++|||.+++
T Consensus 134 -------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 134 -------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp -------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred -------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 1223334444568999999999 9999999988888888775 35889999997633
Q ss_pred -Hhh----cCEEEEEeCCEE
Q psy11936 353 -DNV----CNEIIHLDQQKL 367 (548)
Q Consensus 353 -~~v----adrIi~L~~G~i 367 (548)
..+ +..|+++..+.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGG
T ss_pred HHHHhhcCCceEEEecchhh
Confidence 222 356788876443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-15 Score=154.86 Aligned_cols=161 Identities=11% Similarity=0.021 Sum_probs=89.5
Q ss_pred eeEeeeEEEEC--CcEEEEECCCCCcHHHHHHHHHcCCCCCCCC----eEEEEec----eeeccCchhHHHHHHHhhHHH
Q psy11936 161 LFVNANLLIAN--GRRYGLVGPNGHGKTTLLRHIASRDLKVPPN----IDILYCE----QEVVADDLTAVESVLKADVKR 230 (548)
Q Consensus 161 iL~~vsl~I~~--Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~----g~I~~~~----q~i~~~~~~~~~~~~~~~~~~ 230 (548)
+...|+++|.+ |++++|+|+||||||||+++|+|. ..|.. |.+.+.+ .++ ......+. .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl--~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~~--------~ 225 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV--FNTTSAWEYGREFVFEKLGGDEQ-AMQYSDYP--------Q 225 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH--TTCEEECCTTHHHHHHSSSSCTT-SSCTTTHH--------H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH--hCCCcchhhHHHHHHhhcCCCcc-cCChhHHH--------H
Confidence 35679999999 999999999999999999999985 23444 3333211 111 00000000 0
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc-c
Q psy11936 231 TELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY-I 309 (548)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~-~ 309 (548)
..+..+... ....... +-+..++.. ..+..+..+|+|++++..+++++. .
T Consensus 226 I~~~~q~~~-----------------~~~~t~~----------~nl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~ 276 (365)
T 1lw7_A 226 MALGHQRYI-----------------DYAVRHS----------HKIAFIDTD--FITTQAFCIQYEGKAHPFLDSMIKEY 276 (365)
T ss_dssp HHHHHHHHH-----------------HHHHHHC----------SSEEEESSC--HHHHHHHHHHHHSCCCHHHHHHHHHS
T ss_pred HHHHHHHHH-----------------HHHHhcc----------CCEEEEeCC--chHHHHHHHHHcCCCCHHHHHHHhhc
Confidence 001000000 0000000 000001111 122334456777788888888874 6
Q ss_pred CCCEEEEeC---CC------CCCCHHHHHHHHHHHh----hcCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 310 EPTLLLLDE---PT------NHLDLNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 310 ~P~lLLLDE---PT------n~LD~~s~~~L~~~L~----~~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
+|+++|||| |+ .+||+..+..+.+.|. +.+.+||+++|. ....++|+++..|
T Consensus 277 ~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 277 PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 999999999 65 5899887777777763 346799999986 3444555554433
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-14 Score=148.97 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=85.7
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-CeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPP-NIDILYCEQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~-~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
.+|++++ +.+|++++|+|||||||||||++|+|. ..+. +|.|.+.+..+... .. . ..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~-~~-------~---~~------- 183 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV-FK-------H---KK------- 183 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSC-CC-------C---SS-------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhh-hc-------c---Cc-------
Confidence 3566665 789999999999999999999999984 2343 67887665433110 00 0 00
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDE 318 (548)
...+. ..+|+. +..| +.+|+++|..+|++||+||
T Consensus 184 ---~~v~Q------------------------------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE 217 (372)
T 2ewv_A 184 ---SIVNQ------------------------------REVGED-------TKSF------ADALRAALREDPDVIFVGE 217 (372)
T ss_dssp ---SEEEE------------------------------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESC
T ss_pred ---eEEEe------------------------------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECC
Confidence 00000 012221 2345 4699999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
|| |..+...+.+.. ..+.+||+++|+.+ +..+|||++.
T Consensus 218 ~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~ 255 (372)
T 2ewv_A 218 MR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVD 255 (372)
T ss_dssp CC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHH
Confidence 99 887766555544 34679999999966 5556666543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=130.46 Aligned_cols=57 Identities=5% Similarity=0.085 Sum_probs=40.5
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HH----HHHHHhhcCCeEEEEecCH-------------------HHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAV------------IW----LDNYLQGWKKTLLIVSHDQ-------------------SFLD 353 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~------------~~----L~~~L~~~~~TvIiVSHD~-------------------~~l~ 353 (548)
.+|++|++||||+.+|.... .. |..+.++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996321 22 3334445689999999993 2346
Q ss_pred hhcCEEEEEeCC
Q psy11936 354 NVCNEIIHLDQQ 365 (548)
Q Consensus 354 ~vadrIi~L~~G 365 (548)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 779999999865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-14 Score=132.50 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=84.1
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCCh
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSS 247 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (548)
.+.+|++++|+||||||||||+++|+|. +..|.|.+.+.++....... ....+..+... ...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~---------~~~~~~~~~~~-----~~~ 66 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHG---------RIDPWLPQSHQ-----QNR 66 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSS---------CCCTTSSSHHH-----HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcc---------cccCCccchhh-----hhH
Confidence 4779999999999999999999999974 45667776654331100000 00000000000 001
Q ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhh--hcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy11936 248 EQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQ--DRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325 (548)
Q Consensus 248 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~ 325 (548)
++.+++......+...+... .+..++..+++. ... +.++..+|+|++||+++||++..+|+++ +|+
T Consensus 67 ~v~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~ 134 (191)
T 1zp6_A 67 MIMQIAADVAGRYAKEGYFV---ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDP 134 (191)
T ss_dssp HHHHHHHHHHHHHHHTSCEE---EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCH
T ss_pred HHHHHHHHHHHHHhccCCeE---EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCH
Confidence 11111111100010000000 000011112221 111 3456789999999999999999999887 688
Q ss_pred HHHHHHHHHHhhcC--CeEEEEecCHHHHHhhcCEE
Q psy11936 326 NAVIWLDNYLQGWK--KTLLIVSHDQSFLDNVCNEI 359 (548)
Q Consensus 326 ~s~~~L~~~L~~~~--~TvIiVSHD~~~l~~vadrI 359 (548)
.....+.+.+..+. ..+++.|++. .+..++++|
T Consensus 135 ~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 135 LVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 88888888776542 2345555532 233445544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-13 Score=123.98 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CCeEEEEecCHH
Q psy11936 309 IEPTLLLLDEPTN-HLDLNAVIWLDNYLQGW---KKTLLIVSHDQS 350 (548)
Q Consensus 309 ~~P~lLLLDEPTn-~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~ 350 (548)
.+|++||||||++ ++|+.....|.+++... +.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 4899999999985 89999988888877643 579999999763
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-12 Score=127.04 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=40.6
Q ss_pred hhhcccCCCCHHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q psy11936 285 MQDRATKNFSGGWRMRVSLARAL-YIEPTLLLLD----EPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 285 ~~~~~~~~LSGGqkqRvaLAraL-~~~P~lLLLD----EPTn~LD~~s~~~L~~~L~~~ 338 (548)
..++++..||| || +|| +.+|++++|| |||++||..+...+.+.|..+
T Consensus 145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 45788899999 66 777 9999999999 999999999888888877765
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=139.66 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcCCCC---C----CCC--eEEEEeceeeccC
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASRDLK---V----PPN--IDILYCEQEVVAD 215 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~~~~---~----~~~--g~I~~~~q~i~~~ 215 (548)
|++.+ +++|++.+ |+++||+|.+|++ +||||||||||||||++|+|..+. . +.. ..++|..|.....
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence 55667 88998877 9999999999999 999999999999999999996321 0 111 1234433321100
Q ss_pred -chhHHHHHHHhhHHHHHHHHHHHHHhhhcCCh--hHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCCh---hhhhc
Q psy11936 216 -DLTAVESVLKADVKRTELLAECAKLEAADFSS--EQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSR---AMQDR 288 (548)
Q Consensus 216 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~---~~~~~ 288 (548)
..+.. ....+.. ........+... ....+..+|... ++.. ...+.
T Consensus 95 ~~ltv~--------------------D~~~~g~~~~~~~~~~~i~~~--------i~~q~~~~L~e~~~i~r~l~~~~d~ 146 (427)
T 2qag_B 95 LKLTIV--------------------STVGFGDQINKEDSYKPIVEF--------IDAQFEAYLQEELKIRRVLHTYHDS 146 (427)
T ss_dssp EEEEEE--------------------EEECCCC-CCHHHHSHHHHHH--------HHHHHHHHHHHC--CCCCCCCSCC-
T ss_pred cccchh--------------------hhhhhhhccccchhhhHHHHH--------HHHHHHHHHHHHHhhhhhhcccccc
Confidence 00000 0000000 000000000000 112233333333 2210 00011
Q ss_pred c----c-------CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecC
Q psy11936 289 A----T-------KNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHD 348 (548)
Q Consensus 289 ~----~-------~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD 348 (548)
. + ..|+-.. +.|+++|..+++||++|+||..|.+.....+...+.+ .+.+|+.+|.|
T Consensus 147 rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 147 RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 1 1 2455555 7999999999999999999999999877776666653 46789988875
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.8e-15 Score=138.14 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecC-HHHHHhhcCEEEEEe
Q psy11936 294 SGGWRMRVSLAR------ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHD-QSFLDNVCNEIIHLD 363 (548)
Q Consensus 294 SGGqkqRvaLAr------aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD-~~~l~~vadrIi~L~ 363 (548)
|+|+++++.++. +|+.+|....+|+ +||+..+.. .+.+..+ +.++|.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 899998988888 8999999888884 899877666 5555543 4689999998 999999999998 9
Q ss_pred CCEEEEEcCCHH
Q psy11936 364 QQKLYYYKGNYS 375 (548)
Q Consensus 364 ~G~i~~~~g~y~ 375 (548)
+|+++.. |+.+
T Consensus 170 ~g~~~~~-~~~~ 180 (189)
T 2bdt_A 170 NPRFIFC-MAGD 180 (189)
T ss_dssp CGGGSCC-----
T ss_pred CCcEEEe-ecCC
Confidence 9998753 5443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-12 Score=122.09 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCC
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQ 365 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G 365 (548)
+..++..++++||| ||+.+...+.+.+. .+.|||++|||++.+.. |+ +.+|
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 34455668999999 99999999999887 36799999999998875 33 5666
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-12 Score=137.60 Aligned_cols=146 Identities=23% Similarity=0.181 Sum_probs=85.0
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC---------CCCCCeEEEEec-eeeccCchhHHHHHHHhhHHHH
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL---------KVPPNIDILYCE-QEVVADDLTAVESVLKADVKRT 231 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~---------~~~~~g~I~~~~-q~i~~~~~~~~~~~~~~~~~~~ 231 (548)
-++++|+|..|+.++|||+|||||||||++|+|... ..|..+.+.+.+ ..+...+...+. ....
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli---~~a~--- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII---EGAS--- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC---CCGG---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccc---cchh---
Confidence 479999999999999999999999999999998521 112222232222 111111100000 0000
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCC
Q psy11936 232 ELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEP 311 (548)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P 311 (548)
. ...... . . +.. ..++..+|..++++ +.++.+||+|++|++++|++|+..|
T Consensus 221 ---------~--~~~L~~-~----f---l~~------~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 221 ---------E--GKGLGL-E----F---LRH------IARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp ---------G--SCCSCH-H----H---HHH------HTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred ---------h--hhhhhH-H----H---HHH------HHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCC
Confidence 0 000000 0 0 000 00112233344443 4567789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHH---HHHHHHhhcCCeEEEEe
Q psy11936 312 TLLLLDEPTNHLDLNAVI---WLDNYLQGWKKTLLIVS 346 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~---~L~~~L~~~~~TvIiVS 346 (548)
.||+| |.||+.... .+.+.+...+.++|+||
T Consensus 272 ~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 272 SLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp EEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred EEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999 999985433 33344444456777666
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-13 Score=137.99 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=98.6
Q ss_pred EEEeEEEE---eCC--ceee---------EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeec
Q psy11936 148 KVENFSIS---AKG--NDLF---------VNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVV 213 (548)
Q Consensus 148 ~l~nls~~---y~~--~~iL---------~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~ 213 (548)
++++++|+ |+. ..+| +++||.|.+|+.++|+||||||||||+++|+|. ..|..|.|.+.+..-.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ie~~~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--IPFDQRLITIEDVPEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--SCTTSCEEEEESSSCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--CCCCceEEEECCcccc
Confidence 56777777 753 3344 999999999999999999999999999999984 4567788877653110
Q ss_pred cCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 214 ADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
... .. . . .+++-. .......+
T Consensus 215 ~~~--~~-------~-------------~-----------------------------------~v~~v~--~q~~~~~~ 235 (361)
T 2gza_A 215 FLP--DH-------P-------------N-----------------------------------HVHLFY--PSEAKEEE 235 (361)
T ss_dssp CCT--TC-------S-------------S-----------------------------------EEEEEC--C-------
T ss_pred Ccc--cc-------C-------------C-----------------------------------EEEEee--cCcccccc
Confidence 000 00 0 0 000000 00000012
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQK 366 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~ 366 (548)
+++..++..|+.+|...|+.+|+|||+. ......|. .+..-..|+|.++|+.. +...|+|++.|..+.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~~~l~-~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG---GEAYDFIN-VAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS---THHHHHHH-HHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH---HHHHHHHH-HHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 4555688999999999999999999986 23333332 23222347899999976 667899998887764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-13 Score=141.71 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhc
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~va 356 (548)
+|||||+||+..+++++.+|+++ ||| ..+.+.|+.+ +.|||++||+...++.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 79999999999999999999987 999 4444555443 479999999755554444
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-13 Score=126.01 Aligned_cols=61 Identities=18% Similarity=-0.021 Sum_probs=51.6
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..++++.|++..+++++||+|.+|++++|+||||||||||+|+|+|.. |.+|.|.+.+..+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l---~~~G~V~~~g~~i 70 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI---GHQGNVKSPTYTL 70 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT---TCCSCCCCCTTTC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC---CCCCeEEECCEee
Confidence 346778888888999999999999999999999999999999999852 6677776665544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=110.58 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=30.6
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCe-EEEEecC
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG---WKKT-LLIVSHD 348 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~---~~~T-vIiVSHD 348 (548)
++.+|+|||||||++ ++......|.+++.. .+.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 467899999999998 665557777777654 3567 8888884
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-13 Score=141.00 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=55.8
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+|+++++++.|++..+|+++||++.+|++++|+|+|||||||||++|+|. ..|.+|+|.+.+.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~--~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL--LTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh--hhhCCCEEEEEEEcC
Confidence 46677889999878899999999999999999999999999999999984 345677787777655
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=106.03 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=42.0
Q ss_pred cCCCEEEEeCCCCCC--CHHH----HHHHHHHHhhcCCeEEEEecCHHH--------HHhhcCEEEEEeC
Q psy11936 309 IEPTLLLLDEPTNHL--DLNA----VIWLDNYLQGWKKTLLIVSHDQSF--------LDNVCNEIIHLDQ 364 (548)
Q Consensus 309 ~~P~lLLLDEPTn~L--D~~s----~~~L~~~L~~~~~TvIiVSHD~~~--------l~~vadrIi~L~~ 364 (548)
.+|+++++|+||+.+ |+.. ...|.+++++.+.|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 234555566778999999998765 4578999999964
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=120.03 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=91.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHH--HHHHHHHHhhhcCC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTE--LLAECAKLEAADFS 246 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~ 246 (548)
..+|++++|+||||||||||+++|+|. ..+.+|+|.+.+.++...... ... .......+ ++.+ .....+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~--eql-~~~~~~~gv~~v~q---~~~~~p~ 197 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAI--EQL-EEHAKRIGVKVIKH---SYGADPA 197 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHH--HHH-HHHHHHTTCEEECC---CTTCCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchH--HHH-HHHHHHcCceEEec---cccCCHH
Confidence 368999999999999999999999984 356788999988876432211 100 00000000 0000 0000001
Q ss_pred hhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy11936 247 SEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326 (548)
Q Consensus 247 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~ 326 (548)
.++.+++... .. .+.+. -+++..|... .....+.+|| .+++++..++.+++||.+|. .|
T Consensus 198 ~~v~e~l~~~---~~-~~~d~------vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~-- 256 (328)
T 3e70_C 198 AVAYDAIQHA---KA-RGIDV------VLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA-- 256 (328)
T ss_dssp HHHHHHHHHH---HH-HTCSE------EEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH--
T ss_pred HHHHHHHHHH---Hh-ccchh------hHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH--
Confidence 1122222110 00 00000 0122223321 1122333444 48999999999999996665 33
Q ss_pred HHHHHHHHHhhcCCeEEEEecCH---------HHHHhhcCEEEEEeCCEE
Q psy11936 327 AVIWLDNYLQGWKKTLLIVSHDQ---------SFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 327 s~~~L~~~L~~~~~TvIiVSHD~---------~~l~~vadrIi~L~~G~i 367 (548)
....+..+-...+.|+||+||.- ..+....-.|.++..|+-
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 33344444456788999999943 234445567888887764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=116.85 Aligned_cols=130 Identities=18% Similarity=0.082 Sum_probs=86.3
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhh
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKAD 227 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~ 227 (548)
.++++++.|+... ++++|+ +|++++|+|+|||||||++..|++.. .+..+++.+.+.++... ...
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~~~~--~~~------- 142 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRP--AAR------- 142 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCH--HHH-------
T ss_pred HHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcccH--hHH-------
Confidence 3556777786543 788888 99999999999999999999999842 34567787776654210 000
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 228 VKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
.+. . .+....|++- . .. ....+-.+.+|.+|++++
T Consensus 143 -------~ql----------------~-------------------~~~~~~~l~~-~-~~-~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 143 -------EQL----------------R-------------------LLGEKVGVPV-L-EV-MDGESPESIRRRVEEKAR 177 (295)
T ss_dssp -------HHH----------------H-------------------HHHHHHTCCE-E-EC-CTTCCHHHHHHHHHHHHH
T ss_pred -------HHH----------------H-------------------HhcccCCeEE-E-Ec-CCCCCHHHHHHHHHHHHH
Confidence 000 0 0111223321 0 00 001233455789999998
Q ss_pred ccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q psy11936 308 YIEPTLLLLDEP-TNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 308 ~~~P~lLLLDEP-Tn~LD~~s~~~L~~~L~~ 337 (548)
..+++++|+|+| ++++|......+..++..
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 899999999999 999999888777776554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-10 Score=116.79 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=69.3
Q ss_pred eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhc
Q psy11936 165 ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAAD 244 (548)
Q Consensus 165 vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (548)
++|...+|++++|+|+|||||||++..|++.. .+..++|.+.+.+.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D~~r~----------------~a~---------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRA----------------AAI---------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCH----------------HHH----------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccccccH----------------HHH----------
Confidence 45566789999999999999999999999742 34456777766543110 000
Q ss_pred CChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy11936 245 FSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV---SLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 245 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv---aLAraL~~~P~lLLLDEPTn 321 (548)
+ .+..++..+|++. +..+|||+.+++ +|++++..+|+++|+|+|..
T Consensus 149 ------e-------------------qL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ------E-------------------QLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------H-------------------HHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------H-------------------HHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 0 0111233345531 346799999999 99999999999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-12 Score=140.01 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=90.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccC--chh--HHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVAD--DLT--AVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~--~~~--~~~ 221 (548)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|. ..+..|.|.+.+..+... ... .+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~--l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEEecccchhccCCcceEEEc
Confidence 46677888877766788888 53 79999999999999999999999985 245678888877654211 000 000
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhc--CC----hhHHHHHHHHHHHHHh------cCCCChHHHHHHHHHhCCCChhhhhcc
Q psy11936 222 SVLKADVKRTELLAECAKLEAAD--FS----SEQQEQLKEIYEELKA------IGADSAEPRARRILAGLGFSRAMQDRA 289 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~--~~----~~~~~~l~~~~~~l~~------~~~~~~~~~~~~~L~~lgl~~~~~~~~ 289 (548)
......+ ...+...+.+..... .. .+..+.+.. .... +....... +...|..+|+... ..
T Consensus 219 ~~~g~~f-~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a---~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~---~~ 290 (418)
T 1p9r_A 219 PRVDMTF-ARGLRAILRQDPDVVMVGEIRDLETAQIAVQA---SLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF---LI 290 (418)
T ss_dssp GGGTBCH-HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH---HH
T ss_pred cccCcCH-HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH---HHhCCCcccccchhhHHH-HHHHHHHcCCcHH---HH
Confidence 0000000 000000000000000 00 122222211 1110 11222233 3345778898753 26
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLL 316 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLL 316 (548)
+.+|||||+|| |||+|+.+|+++.-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 78999999999 99999999999763
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-11 Score=123.84 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=32.6
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~ 326 (548)
.+...+||||+||+++|++...+|+|||+||||++||+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 455789999999999984333399999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-10 Score=113.00 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=83.9
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCe-EEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHhhhcCChh
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI-DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSE 248 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g-~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (548)
.+|++++|+|+|||||||++..|++.. .+..| +|.+.+.+..... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l--~~~~G~~V~lv~~D~~r~~--a----------------------------- 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS--MLEKHKKIAFITTDTYRIA--A----------------------------- 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCCEEEEECCCSSTT--H-----------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HHhcCCEEEEEecCcccch--H-----------------------------
Confidence 379999999999999999999999742 23344 6777665542110 0
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q psy11936 249 QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAV 328 (548)
Q Consensus 249 ~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~ 328 (548)
.+++. .+...+|++.. . ..++ ...+.+|++ +.+|+++|+| |+++|+...
T Consensus 150 -~eqL~-------------------~~~~~~gl~~~-----~-~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~ 198 (296)
T 2px0_A 150 -VEQLK-------------------TYAELLQAPLE-----V-CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDP 198 (296)
T ss_dssp -HHHHH-------------------HHHTTTTCCCC-----B-CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSH
T ss_pred -HHHHH-------------------HHHHhcCCCeE-----e-cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhH
Confidence 00000 01112233210 0 1222 334666664 4999999999 999998655
Q ss_pred HHHHHHHhhc----C-CeEEEE--ecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 329 IWLDNYLQGW----K-KTLLIV--SHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 329 ~~L~~~L~~~----~-~TvIiV--SHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
..+.++..-. . .+++++ ||+...+..+|+++..+..+.++..
T Consensus 199 ~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 199 QYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444332221 1 345555 9999999999998776777777753
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-10 Score=124.66 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=42.3
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
-+++||++.+|++++|||+||||||||+++|+|. ..+.+|+|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--FEQQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH--hhhcCCeEEEecCcc
Confidence 4689999999999999999999999999999985 346678888877654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=112.90 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.0
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~ 351 (548)
+..+|+|||||||++ ||..+...|.++|.+. +.++|++||+...
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 788999999999999 9999999999999876 3689999999754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-11 Score=115.68 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCC---CeEEEEeceee
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRDLKVPP---NIDILYCEQEV 212 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~~~~~~---~g~I~~~~q~i 212 (548)
++++|+|+||||||||+++|+|. ..+. .|.|.+.+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~--~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--hhhcCCceEEEEEcCccc
Confidence 58999999999999999999985 2343 57787777653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-12 Score=123.97 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=25.2
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+|+++||+||||||||||+++|+|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-12 Score=128.29 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=85.9
Q ss_pred eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHH
Q psy11936 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLA 235 (548)
Q Consensus 156 y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~ 235 (548)
|+...+|++++|.+..| ++|+||||||||||+++|+|.. . .+.+.+.+.++.......... ....+.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~--~--~~~i~i~g~~l~~~~~~~~~~-------~i~~vf 96 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES--G--LNFISVKGPELLNMYVGESER-------AVRQVF 96 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT--T--CEEEEEETTTTCSSTTHHHHH-------HHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc--C--CCEEEEEcHHHHhhhhhHHHH-------HHHHHH
Confidence 34556899999999999 9999999999999999999852 1 246666665543221111111 111111
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEE
Q psy11936 236 ECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLL 315 (548)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLL 315 (548)
+.... ........+++ ..+....... ..+......++.+.+|||||+||+.|++|+..+|++|
T Consensus 97 ~~a~~--~~p~i~~~Dei-------d~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L- 159 (274)
T 2x8a_A 97 QRAKN--SAPCVIFFDEV-------DALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII- 159 (274)
T ss_dssp HHHHH--TCSEEEEEETC-------TTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS-
T ss_pred HHHHh--cCCCeEeeehh-------hhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC-
Confidence 11100 00000000000 0000000000 0011123456778899999999999999999999985
Q ss_pred EeCCCC------------CCCHHHHHHHHHHHh
Q psy11936 316 LDEPTN------------HLDLNAVIWLDNYLQ 336 (548)
Q Consensus 316 LDEPTn------------~LD~~s~~~L~~~L~ 336 (548)
|||+. ..|...+..+.+.+.
T Consensus 160 -D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 160 -DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred -CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 99864 335667777766654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-12 Score=141.06 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=41.2
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
.++++++|.+.+|+.++|+|||||||||||++|+|. ..|..+.|.+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--SCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--CCCCCCEEEEcCc
Confidence 467889999999999999999999999999999985 2466676666553
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=8.8e-09 Score=107.28 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHH---HHHHHhhcCCeEEEEecCHH-------
Q psy11936 300 RVSLARALYIE--PTLLLLDEPTNHL----------DL----NA---VIW---LDNYLQGWKKTLLIVSHDQS------- 350 (548)
Q Consensus 300 RvaLAraL~~~--P~lLLLDEPTn~L----------D~----~s---~~~---L~~~L~~~~~TvIiVSHD~~------- 350 (548)
-+.++++++.. |++|++|+|++.+ |. .. ... |..++++++.|||+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45677777654 9999999999998 32 11 122 33334667899999999654
Q ss_pred ---------HHHhhcCEEEEEeCCEE
Q psy11936 351 ---------FLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 351 ---------~l~~vadrIi~L~~G~i 367 (548)
.+..+||.++.+..+.+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCcccCCchHhhhccceEEEEEEeee
Confidence 25678999998876543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-10 Score=116.69 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCCeEEEEe-ceeeccCchhHHHHHHHhhHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKV-PPNIDILYC-EQEVVADDLTAVESVLKADVKRTELLAECA 238 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~-~~~g~I~~~-~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (548)
-++++++.+ +|++++|+||||||||||+++|+|.. . +..|.|.+. +......... ...++.+.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~--~~~~~G~I~~~~G~g~~tt~~~-----------~i~~v~q~- 269 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ--NEILTNDVSNVSGLGQHTTTAA-----------RLYHFPHG- 269 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCS--SCCCCC-------------CCC-----------EEEECTTS-
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccc--cccccCCccccCCCCccceEEE-----------EEEEECCC-
Confidence 456666654 89999999999999999999999853 4 566666554 2111000000 00000000
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHH
Q psy11936 239 KLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARAL 307 (548)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL 307 (548)
......+++.+. .+..+........+.++++.+|+.. +.++.+.+|| ||+||++||+++
T Consensus 270 --~~l~dtpgv~e~------~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 270 --GDVIDSPGVREF------GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --CEEEECHHHHTC------CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred --CEecCcccHHHh------hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 000001111100 0000000011234556788889874 5688999999 999999999875
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-09 Score=114.99 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=100.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAK 239 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (548)
..|+++..-+.+|+++.|.|++|+|||||+..|++... ......+.|++.+.... .....++... .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~--~l~~r~~~~~----------~- 256 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQ--QLVMRMLCAE----------G- 256 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHH--HHHHHHHHHH----------H-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHH--HHHHHHHHHH----------c-
Confidence 46788887899999999999999999999999986321 11122566666543211 0011100000 0
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHc--cCCCEEE
Q psy11936 240 LEAADFSSEQQEQLKEIYEELKAIGA--DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY--IEPTLLL 315 (548)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~--~~P~lLL 315 (548)
..... .+. .+. .....++...+..++... ..-.....+|+++.+ +.|+.++ .+|++++
T Consensus 257 ----~~~~~----------~l~-~g~l~~~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 257 ----NINAQ----------NLR-TGKLTPEDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp ----TCCHH----------HHH-TSCCCHHHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred ----CCCHH----------HHh-cCCCCHHHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 00000 000 000 001122333333333221 112234579999987 4556665 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHH----hhcCCeEEEEec---------C--HH--------HHHhhcCEEEEEeC
Q psy11936 316 LDEPTNHLDL--------NAVIWLDNYL----QGWKKTLLIVSH---------D--QS--------FLDNVCNEIIHLDQ 364 (548)
Q Consensus 316 LDEPTn~LD~--------~s~~~L~~~L----~~~~~TvIiVSH---------D--~~--------~l~~vadrIi~L~~ 364 (548)
+|+++...+. ..+..+...| ++++.+||+++| | +. .+...||.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999998742 2233444444 456889999999 3 21 46678999999976
Q ss_pred CEE
Q psy11936 365 QKL 367 (548)
Q Consensus 365 G~i 367 (548)
+..
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-10 Score=122.43 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=95.0
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL--KVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~--~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
.+++.+..+..+.|+|.+||||||+|++|....+ ..|....+...+ ........+.. ++.. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD--pK~~el~~~~~-----------lPhl--~~ 223 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID--PKMLELSVYEG-----------IPHL--LT 223 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC--CSSSGGGGGTT-----------CTTB--SS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC--Cchhhhhhhcc-----------CCcc--cc
Confidence 4678888899999999999999999999864222 234444444322 21111110000 0000 00
Q ss_pred hhcCChh-HHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChh--hhhcccCCCCHHHHHHH----------HHHHHHc
Q psy11936 242 AADFSSE-QQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRA--MQDRATKNFSGGWRMRV----------SLARALY 308 (548)
Q Consensus 242 ~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~--~~~~~~~~LSGGqkqRv----------aLAraL~ 308 (548)
....+.. ....+..+..+ .+.|. ++|..+|+.+. +..+....+||||+|+. ++|+++.
T Consensus 224 ~Vvtd~~~a~~~L~~~~~E--------merR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 224 EVVTDMKDAANALRWCVNE--------MERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp SCBCSHHHHHHHHHHHHHH--------HHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCC
T ss_pred eeecCHHHHHHHHHHHHHH--------HHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccc
Confidence 0000110 01111111111 23343 57778887632 11122346889987752 3566778
Q ss_pred cCCC-EEEEeCCCCCCCHHH--H-HHHHHHH---hhcCCeEEEEecCHH-------HHHhhcCEEEE
Q psy11936 309 IEPT-LLLLDEPTNHLDLNA--V-IWLDNYL---QGWKKTLLIVSHDQS-------FLDNVCNEIIH 361 (548)
Q Consensus 309 ~~P~-lLLLDEPTn~LD~~s--~-~~L~~~L---~~~~~TvIiVSHD~~-------~l~~vadrIi~ 361 (548)
..|. ++++||+++.+|... . ..|..+. +.++.++|++||+.. ....+++||.+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp CCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred cCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8898 899999999988432 1 2222222 234679999999987 55666777765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-12 Score=131.38 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=53.1
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEE-EEeCC-EEEEEcCCHHH
Q psy11936 310 EP--TLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEII-HLDQQ-KLYYYKGNYSM 376 (548)
Q Consensus 310 ~P--~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi-~L~~G-~i~~~~g~y~~ 376 (548)
+| +++++|||++.+|+..+....+.+... +.|| +||+...+..+|++|. +|++| +++. .|.+++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~~ 210 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR-KGDWSN 210 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCCH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee-cCCCCH
Confidence 89 999999999999999998888887765 3454 3999999999999999 89999 7764 365543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-09 Score=116.32 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|+++||+|.+ +++||+|||||||||||++|+|. ..|.+|.|.+.++.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--LIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--HCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--CCCCCCEEEECCEEc
Confidence 3579999999999 99999999999999999999985 356677777766554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-12 Score=131.09 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=93.5
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECC-------cEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANG-------RRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA 219 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~G-------e~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~ 219 (548)
++.++++..|+...+++++++.|..| +.++|+||||+|||||+++|+|.. . . .+.+....+... ...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~--~~~~~sg~~~~~-~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--T--NIHVTSGPVLVK-QGD 92 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH-T--C--CEEEEETTTCCS-HHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh-C--C--CEEEEechHhcC-HHH
Confidence 44556777788888999999999877 899999999999999999999842 1 1 111111111111 111
Q ss_pred HHHHHHhhHH-HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCC------CChHHHHHHHHHhCCCChhhhhcccCC
Q psy11936 220 VESVLKADVK-RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA------DSAEPRARRILAGLGFSRAMQDRATKN 292 (548)
Q Consensus 220 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~------~~~~~~~~~~L~~lgl~~~~~~~~~~~ 292 (548)
+......... ...++. +......+..+.+ +..+..... ......+...+..++|.. ....+..
T Consensus 93 l~~~~~~~~~~~v~~iD-----E~~~l~~~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~ 162 (334)
T 1in4_A 93 MAAILTSLERGDVLFID-----EIHRLNKAVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGL 162 (334)
T ss_dssp HHHHHHHCCTTCEEEEE-----TGGGCCHHHHHHH---HHHHHTSCCCC---------------CCCEEEE--EESCGGG
T ss_pred HHHHHHHccCCCEEEEc-----chhhcCHHHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCccc
Confidence 1110000000 000000 0000111222222 111221111 112233444555666642 4566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCE
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNE 358 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadr 358 (548)
||+|++||+.++ .+||+.+...+.++|..... ..-++|+.+.+..+|++
T Consensus 163 Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 163 LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 999999998655 77887777777777654311 01247888888877764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-09 Score=107.19 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=35.1
Q ss_pred cEEEEeE-EEEe-CCceeeEeeeEEEEC---CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 146 DIKVENF-SISA-KGNDLFVNANLLIAN---GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 146 ~I~l~nl-s~~y-~~~~iL~~vsl~I~~---Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|+++|| +++| ++..+|+++||+|.+ |++++|+|++||||||++++|++
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5899999 9999 778899999999999 99999999999999999999997
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.1e-10 Score=113.86 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=50.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEE-------------------ECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEE
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLI-------------------ANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I-------------------~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~ 206 (548)
.|+++||++.|+ +++++++|.+ .+|+++||+|+||||||||+++|+|.....|.+|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 478899999994 7899999988 8999999999999999999999998421126677777
Q ss_pred E
Q psy11936 207 Y 207 (548)
Q Consensus 207 ~ 207 (548)
+
T Consensus 115 v 115 (308)
T 1sq5_A 115 L 115 (308)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-08 Score=95.16 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCeEEEEecCHHHH--HhhcCEEEEEe
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW-KKTLLIVSHDQSFL--DNVCNEIIHLD 363 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~-~~TvIiVSHD~~~l--~~vadrIi~L~ 363 (548)
.|.|+.+|..|++.++.+|..+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998888755443 3455666666676766654 45788888987654 56799988885
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-09 Score=111.68 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=66.9
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE---eceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh--hh
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---CEQEVVADDLTAVESVLKADVKRTELLAECAKLE--AA 243 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~---~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 243 (548)
+..|++++|+||||||||||+++|+ .. .+..|.|.+ .|.++...... .. ....+++.+...+. ..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~--~~~~G~i~~~~~~G~~~t~~~~~-~~------~~~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE--ELRTQEVSEKTERGRHTTTGVRL-IP------FGKGSFVGDTPGFSKVEA 231 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC--CCCCSCC---------CCCCEEE-EE------ETTTEEEESSCCCSSCCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh--hCcccccccccCCCCCceeeEEE-EE------cCCCcEEEECcCcCcCcc
Confidence 3469999999999999999999999 53 456677766 55443211100 00 00000000000000 00
Q ss_pred cCChhHHHHHHHH------H-HHHHh-cCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 244 DFSSEQQEQLKEI------Y-EELKA-IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 244 ~~~~~~~~~l~~~------~-~~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
....+. +++... + ..+.. ....+...++.++|+.+++.....++++..|||.+++++.|||
T Consensus 232 ~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 232 TMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred cccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111 111000 0 00111 1223345678999999999865678999999999999999986
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-08 Score=98.01 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH-cC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA-SR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa-G~ 195 (548)
+...++||++.+|+++||+||||||||||+++|+ |.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999 85
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-08 Score=92.87 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.2
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
||++.+|+++||+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 678889999999999999999999999985
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-08 Score=100.50 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=64.4
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
..|+++||+|+|++++++|+||||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999976678999999985 89999999996 99999999999999998754 4544 499
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+++
T Consensus 132 ~v~Q~~~lf~ 141 (306)
T 3nh6_A 132 VVPQDTVLFN 141 (306)
T ss_dssp EECSSCCCCS
T ss_pred EEecCCccCc
Confidence 9999998764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-08 Score=108.71 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=91.9
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCch-------hHHHHH
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDL-------TAVESV 223 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~-------~~~~~~ 223 (548)
+++--||...+++++++.+..|+.++|+||||||||||+++|++.. .....+.+.+.+........ .....+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL-PTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS-CCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC-CcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 4455578888999999999999999999999999999999999852 22222555554432211100 000000
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh-----------cCCC---ChHHHHHHHHHhCCCChhhhhcc
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA-----------IGAD---SAEPRARRILAGLGFSRAMQDRA 289 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----------~~~~---~~~~~~~~~L~~lgl~~~~~~~~ 289 (548)
.... ........ ..... ......+.. .+.. ........++..+... ...
T Consensus 118 ~e~~-------~~~~~~~~--~~r~~----~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~ 180 (604)
T 3k1j_A 118 VEKY-------REKAKSQE--SVKSS----NMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQ 180 (604)
T ss_dssp HHHH-------HHHHHHHT--CC---------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC-
T ss_pred HHHH-------HHhhccch--hhhhh----cccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhh
Confidence 0000 00000000 00000 000000000 0000 0000111122111111 112
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 290 TKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 290 ~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
...+|+|++|++..+++...++.+|+|||... |++.....|.+.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 35699999999999999999999999999888 899999999999974
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.9e-08 Score=94.50 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=62.8
Q ss_pred CcEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceeee
Q psy11936 465 PILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLVD 538 (548)
Q Consensus 465 ~vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~~ 538 (548)
..|+++||+++|+ +++++|+++||+. .|+.+.|.||| |||+|+|+|.++|++|+|+..- +|+|+.|+|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~~~ 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCCCS
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcccC
Confidence 3699999999996 3468999999986 99999999996 8999999999999999987643 6999999997653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.42 E-value=7e-08 Score=97.24 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=61.2
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
++|+++||+|+|++..++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++ .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 58999999999976556999999986 89999999996 89999999999999998754 4444 4
Q ss_pred eeeeeccc
Q psy11936 527 FAYEGMKP 534 (548)
Q Consensus 527 ~~y~~~~~ 534 (548)
|+|+.|+|
T Consensus 86 ig~v~Q~~ 93 (275)
T 3gfo_A 86 IGIVFQDP 93 (275)
T ss_dssp EEEECSSG
T ss_pred EEEEEcCc
Confidence 99999998
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-08 Score=104.02 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHhhc-------CCeEEEEecCHHHHH
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEP----------TNHLDLNAVIWLDNYLQGW-------KKTLLIVSHDQSFLD 353 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEP----------Tn~LD~~s~~~L~~~L~~~-------~~TvIiVSHD~~~l~ 353 (548)
|+++.|..+++|....|.||++||+ ++++|......+..+|..+ +..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6788899999999999999999999 3466665555455544322 357888999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-09 Score=98.78 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
.+.+|++|+.+|.++++| ||+||..++..+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999988887754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.6e-08 Score=94.27 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=61.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
+|+++||+|+|++++++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 3789999999954468999999985 99999999996 89999999999999998764 3333 4899
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
+.|+|.+.+
T Consensus 81 v~q~~~l~~ 89 (243)
T 1mv5_A 81 VSQDSAIMA 89 (243)
T ss_dssp ECCSSCCCC
T ss_pred EcCCCcccc
Confidence 999987653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-08 Score=95.43 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=62.0
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------e
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----------~ 526 (548)
.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .
T Consensus 5 ~~~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEECC-EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 357999999999965 67999999985 99999999996 89999999999999998754 3333 4
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 84 i~~v~q~~~l~ 94 (257)
T 1g6h_A 84 IVRTFQTPQPL 94 (257)
T ss_dssp EEECCCCCGGG
T ss_pred EEEEccCCccC
Confidence 89999998654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-08 Score=94.39 Aligned_cols=73 Identities=7% Similarity=-0.043 Sum_probs=62.2
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------e
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----------~ 526 (548)
.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++ .
T Consensus 4 ~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 357999999999965 67999999986 99999999996 89999999999999998754 3333 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 83 i~~v~q~~~l~ 93 (240)
T 1ji0_A 83 IALVPEGRRIF 93 (240)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecCCccC
Confidence 99999998664
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.36 E-value=9e-08 Score=96.61 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=61.2
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++
T Consensus 18 ~~~~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4568999999999965 67999999985 99999999996 89999999999999998754 4444
Q ss_pred -eeeeeeccce
Q psy11936 526 -TFAYEGMKPL 535 (548)
Q Consensus 526 -~~~y~~~~~~ 535 (548)
.|+|+.|+|.
T Consensus 97 ~~i~~v~Q~~~ 107 (279)
T 2ihy_A 97 QHIGFVSHSLL 107 (279)
T ss_dssp TTEEEECHHHH
T ss_pred CcEEEEEcCcc
Confidence 3899999974
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-09 Score=102.04 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+|. ..|.+|.|.+.+..+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~--~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA--LIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHH--HSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcc--cccCCCeEEECCEEc
Confidence 4788888765542 456666 89999999999999999999985 356777787776654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.8e-07 Score=91.72 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=46.7
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CCeEEEEe--cCHH
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLD-EPTNHLDLNAVIWLDNYLQG-W-KKTLLIVS--HDQS 350 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLD-EPTn~LD~~s~~~L~~~L~~-~-~~TvIiVS--HD~~ 350 (548)
.++..+|+|+++++. +.+...++-|+++| +|++++|......+...+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55556777889999 99999999876544444443 3 57888888 8874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=94.83 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce---------eee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV---------TFA 528 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~---------~~~ 528 (548)
-++|+++||+++|++ +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .|+
T Consensus 13 ~~~l~i~~l~~~y~~-~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEECC-EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 468999999999964 68999999985 99999999996 89999999999999998754 4443 489
Q ss_pred eeeccceee
Q psy11936 529 YEGMKPLLV 537 (548)
Q Consensus 529 y~~~~~~~~ 537 (548)
|+.|.|.+.
T Consensus 92 ~v~q~~~l~ 100 (256)
T 1vpl_A 92 YLPEEAGAY 100 (256)
T ss_dssp EECTTCCCC
T ss_pred EEcCCCCCC
Confidence 999998654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-07 Score=93.61 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=61.3
Q ss_pred cEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
.|+++||+++|++ ++++|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+..- +|+|+.|+|.+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~~~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAWIQ 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCCCC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCcCC
Confidence 5899999999963 368999999985 99999999996 8999999999999999987644 599999998653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-07 Score=94.61 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=62.8
Q ss_pred CcEEEEeeEEEeCC--CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 465 PILGLHNVTFAYEG--MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~--~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
.+|+++||+|+|++ .+++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999964 267999999985 99999999996 99999999999999998764 3443 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 95 i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 95 VAAVGQEPLLFG 106 (271)
T ss_dssp EEEECSSCCCCS
T ss_pred EEEEecCCcccc
Confidence 899999997653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-07 Score=85.07 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=30.7
Q ss_pred ee--EeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LF--VNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL--~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+ ++++|.+.+| +++|+||||||||||+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 45 6889999999 9999999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-07 Score=93.55 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=61.1
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------- 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------- 525 (548)
++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 5 ~~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 47999999999964 67999999985 99999999996 99999999999999998754 3333
Q ss_pred ----------eeeeeeccceee
Q psy11936 526 ----------TFAYEGMKPLLV 537 (548)
Q Consensus 526 ----------~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~ 105 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLW 105 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCC
T ss_pred ChhhHHHHhcceEEEecCcccC
Confidence 389999998654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-07 Score=104.85 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred cccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-CeEEE-EecCHHHHHhhcCE
Q psy11936 288 RATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN-HLDLNAVIWLDNYLQGW--K-KTLLI-VSHDQSFLDNVCNE 358 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn-~LD~~s~~~L~~~L~~~--~-~TvIi-VSHD~~~l~~vadr 358 (548)
..+.-+|+|+.+|..++++++.++++||+|||.. +||......+...+... . .+|++ +|||...+..+++.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 4566789999999999999999999999999997 89987655544444332 2 35666 49998888777764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-07 Score=92.08 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=61.2
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------- 525 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------- 525 (548)
++|+++||+++|++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++
T Consensus 3 ~~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 36999999999965 67999999986 99999999996 89999999999999998754 3332
Q ss_pred -eeeeeeccceee
Q psy11936 526 -TFAYEGMKPLLV 537 (548)
Q Consensus 526 -~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 82 ~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 82 RKLGFVFQFHYLI 94 (224)
T ss_dssp HHEEEECSSCCCC
T ss_pred CcEEEEecCcccC
Confidence 399999998654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-07 Score=93.69 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=61.4
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
++|+++||+++|++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ +
T Consensus 23 ~~l~i~~l~~~y~~-~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGS-LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 47999999999964 67999999985 99999999996 99999999999999998754 4444 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|+|.+.
T Consensus 102 i~~v~Q~~~l~ 112 (263)
T 2olj_A 102 VGMVFQRFNLF 112 (263)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEeCCCcCC
Confidence 89999998654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-07 Score=92.56 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 466 ILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+|+++||+|+|+++ .++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47899999999742 36999999985 89999999996 89999999999999998765 3322
Q ss_pred ---eeeeeeccceeee
Q psy11936 526 ---TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ---~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|.+..
T Consensus 81 ~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIP 96 (235)
T ss_dssp HHHHEEEECTTCCCCT
T ss_pred hhccEEEEecCCccCC
Confidence 4999999997643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-07 Score=93.17 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=61.1
Q ss_pred cEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 466 ILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 466 vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
-++++||+|+|+ +++++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++ .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 378999999994 3467999999986 99999999996 89999999999999998754 3333 489
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 87 ~v~Q~~~l~~ 96 (247)
T 2ff7_A 87 VVLQDNVLLN 96 (247)
T ss_dssp EECSSCCCTT
T ss_pred EEeCCCcccc
Confidence 9999997653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=87.60 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.+|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998863
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-07 Score=90.35 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----eeeeeec
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----TFAYEGM 532 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----~~~y~~~ 532 (548)
...|+++||+++|++ ++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. +.++ .|+|+.|
T Consensus 8 ~~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 468999999999965 7999999985 89999999996 89999999999999998764 3443 5899999
Q ss_pred cceee
Q psy11936 533 KPLLV 537 (548)
Q Consensus 533 ~~~~~ 537 (548)
+|.+.
T Consensus 86 ~~~~~ 90 (214)
T 1sgw_A 86 EIIVP 90 (214)
T ss_dssp SCCCC
T ss_pred CCcCC
Confidence 98654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-07 Score=92.41 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=61.9
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
.++|+++||+++|++ +++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .+
T Consensus 9 ~~~l~~~~l~~~~~~-~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ-QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeCC-eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 368999999999965 68999999985 89999999996 89999999999999998754 4444 38
Q ss_pred eeeecccee
Q psy11936 528 AYEGMKPLL 536 (548)
Q Consensus 528 ~y~~~~~~~ 536 (548)
+|+.|.|.+
T Consensus 88 ~~v~q~~~~ 96 (266)
T 4g1u_C 88 AVMRQYSEL 96 (266)
T ss_dssp EEECSCCCC
T ss_pred EEEecCCcc
Confidence 999998865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-07 Score=91.86 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
+|+++||+++|++++++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|+|+.. -.|+|+.|+|.+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC
Confidence 6899999999972368999999985 99999999996 899999999999999999733 2589999998664
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-08 Score=92.31 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
...|++|+.+|.++++| ||+||...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999888777776654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.25 E-value=5.2e-06 Score=85.68 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=36.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCeEEEEecCHHHHHhhc
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQG------WKKTLLIVSHDQSFLDNVC 356 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~------~~~TvIiVSHD~~~l~~va 356 (548)
..|.+|+|||+... |......|..++.. .+.++|++||+..+...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888888754 3568999999987665543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=90.02 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=76.1
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+.+.--+.+|+.+.|.|++|+|||||+..|+.... .....+.|+.-+... ..+ .
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms~---~ql-------------~------- 90 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMSA---EQL-------------A------- 90 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSCH---HHH-------------H-------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCCH---HHH-------------H-------
Confidence 444444688999999999999999999988874311 123455555433210 000 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
.++......+.+. .+ .-..||+++.+|+..|...+.+++++|.|+|+.
T Consensus 91 ----------------------------~Rlls~~~~v~~~-~l---~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~ 138 (338)
T 4a1f_A 91 ----------------------------LRALSDLTSINMH-DL---ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYV 138 (338)
T ss_dssp ----------------------------HHHHHHHHCCCHH-HH---HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTC
T ss_pred ----------------------------HHHHHHhhCCCHH-HH---hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC
Confidence 0011111122221 11 124799999999999999999999999999865
Q ss_pred CCCHHHHHHHHH-HHhhc-CCeEEEEe
Q psy11936 322 HLDLNAVIWLDN-YLQGW-KKTLLIVS 346 (548)
Q Consensus 322 ~LD~~s~~~L~~-~L~~~-~~TvIiVS 346 (548)
. +..+..... +.+.+ +..+|||-
T Consensus 139 s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 139 R--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp C--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred c--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 444433333 33344 45666654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=96.43 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=62.8
Q ss_pred CCCCcEEEEeeEEEeCCC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------
Q psy11936 462 LQPPILGLHNVTFAYEGM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------- 525 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------- 525 (548)
...++|+++||+++|+++ ..+|+||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 356799999999999642 36899999985 99999999996 99999999999999998754 4443
Q ss_pred ------eeeeeeccceeee
Q psy11936 526 ------TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ------~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|.+..
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp HHHHHTTEEEECSSCCCCT
T ss_pred HHHHhCcEEEEeCCCccCC
Confidence 4999999997653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=83.51 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=31.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
-|.+|+++.|+||||||||||+..|++.. .+..+.+.|...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEec
Confidence 47899999999999999999999998632 233455666543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.3e-07 Score=90.83 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred cEEEEeeEEEeC-CC---CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------eee
Q psy11936 466 ILGLHNVTFAYE-GM---KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------TFA 528 (548)
Q Consensus 466 vL~l~~vs~~Y~-~~---~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------~~~ 528 (548)
+|+++||+++|+ ++ +++|+|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 33 57999999985 99999999996 89999999999999998765 4443 489
Q ss_pred eeeccc
Q psy11936 529 YEGMKP 534 (548)
Q Consensus 529 y~~~~~ 534 (548)
|+.|+|
T Consensus 82 ~v~q~~ 87 (266)
T 2yz2_A 82 IAFQYP 87 (266)
T ss_dssp EECSSG
T ss_pred EEeccc
Confidence 999997
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-07 Score=89.51 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.1
Q ss_pred EeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 150 ENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 150 ~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|++..++.....+.+++...+|++++|+|+||||||||+++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677788877788888888899999999999999999999999974
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-06 Score=83.70 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=25.1
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|++|||||||+..|+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 578999999999999999999998875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.8e-07 Score=84.34 Aligned_cols=37 Identities=30% Similarity=0.142 Sum_probs=23.8
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...++||||++.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999863
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=6.2e-07 Score=85.36 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEe
Q psy11936 303 LAR-ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLD 363 (548)
Q Consensus 303 LAr-aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~ 363 (548)
.|+ +++.+|.+++|||||+++|..+...+...|.....- +.++|. . ..||+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 456 788899999999999999987777776666543211 244562 1 4689988765
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.3e-07 Score=98.30 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=64.5
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~ 528 (548)
.-|+++||+|+|++++++++|+||+. .|+++.|.||| |||+|+|+|.++|++|.|+. ++++ .++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999976678999999986 89999999995 99999999999999998754 5555 599
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 433 ~v~Q~~~lf~ 442 (598)
T 3qf4_B 433 IVLQDTILFS 442 (598)
T ss_dssp EECTTCCCCS
T ss_pred EEeCCCcccc
Confidence 9999998764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-07 Score=93.39 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=63.3
Q ss_pred CCCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------ee
Q psy11936 462 LQPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TF 527 (548)
Q Consensus 462 ~~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~ 527 (548)
.|...|+++||+++|++++.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 36679999999999933367999999986 89999999996 99999999999999998754 3443 58
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+|+.|++.+.
T Consensus 90 g~v~Q~~~l~ 99 (355)
T 1z47_A 90 GLVFQNYALF 99 (355)
T ss_dssp EEECGGGCCC
T ss_pred EEEecCcccC
Confidence 9999998664
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-07 Score=93.61 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=61.6
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------e
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------~ 526 (548)
+.|+++||+++|++ ..+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++ .
T Consensus 3 ~~l~i~~ls~~y~~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQN-TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 37999999999965 68999999985 89999999996 89999999999999998753 4443 4
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
|+|+.|++.|.
T Consensus 82 ig~vfQ~~~l~ 92 (359)
T 3fvq_A 82 LGYLVQEGVLF 92 (359)
T ss_dssp CEEECTTCCCC
T ss_pred EEEEeCCCcCC
Confidence 99999998765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=82.85 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++|.+|++++|+||||||||||+++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.8e-07 Score=88.71 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=60.5
Q ss_pred CcEEEEeeEEEeCCC--CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 465 PILGLHNVTFAYEGM--KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~--~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
..|+++||+|+|++. +++|+|+||+. .|+.+.|.||| |||+|+|+|.++| +|.|+. ++++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999753 46999999985 99999999996 9999999999987 687643 4443 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 95 i~~v~Q~~~l~~ 106 (260)
T 2ghi_A 95 IGIVPQDTILFN 106 (260)
T ss_dssp EEEECSSCCCCS
T ss_pred EEEEcCCCcccc
Confidence 899999997653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-06 Score=96.45 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=63.6
Q ss_pred CcEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
..|+++||+|+|+++ +++++|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999753 67999999985 99999999995 89999999999999998754 4444 59
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 420 ~~v~Q~~~l~~ 430 (582)
T 3b5x_A 420 ALVSQNVHLFN 430 (582)
T ss_pred EEEcCCCcccc
Confidence 99999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-06 Score=96.64 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=63.8
Q ss_pred CcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
.-|+++||+|+|++ .+++++|+||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 367999999985 89999999996 89999999999999998754 5554 49
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 418 ~~v~Q~~~l~~ 428 (578)
T 4a82_A 418 GLVQQDNILFS 428 (578)
T ss_dssp EEECSSCCCCS
T ss_pred EEEeCCCccCc
Confidence 99999998864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-07 Score=89.95 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred cEEEEeeEEEeCCC---CcccccCCccCCCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------eee-e
Q psy11936 466 ILGLHNVTFAYEGM---KPLLMSKADEDQGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-------TFA-Y 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~---~~ll~~v~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-------~~~-y 529 (548)
+|+++||+++|++. +++|+|+||+..|+.+.|.||| |||+|+|+|.+ |++|.|+. ++++ .++ |
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 47899999999642 5799999998449999999996 89999999999 99998765 3344 589 9
Q ss_pred eecccee
Q psy11936 530 EGMKPLL 536 (548)
Q Consensus 530 ~~~~~~~ 536 (548)
+.|+|.+
T Consensus 80 v~Q~~~l 86 (263)
T 2pjz_A 80 LPEAYEI 86 (263)
T ss_dssp CGGGSCT
T ss_pred eCCCCcc
Confidence 9999865
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.2e-07 Score=89.80 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCC--CCCCCCCeee-ccce---------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPD--PPPLQPPILG-LHNV--------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~--~~~~~~~~~~-~~n~--------- 525 (548)
+.++|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|. .+|++|+|+. +.++
T Consensus 17 ~~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED-KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp ---CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CCceEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3468999999999964 68999999985 99999999996 8999999999 4688998754 3332
Q ss_pred --eeeeeeccceee
Q psy11936 526 --TFAYEGMKPLLV 537 (548)
Q Consensus 526 --~~~y~~~~~~~~ 537 (548)
.|+|+.|+|.+.
T Consensus 96 ~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 96 GEGIFMAFQYPVEI 109 (267)
T ss_dssp HHTEEEECSSCCCC
T ss_pred hCCEEEEccCcccc
Confidence 389999998653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=96.09 Aligned_cols=74 Identities=22% Similarity=0.134 Sum_probs=63.5
Q ss_pred CcEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------ee
Q psy11936 465 PILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~ 527 (548)
..|+++||+|+|+++ +++|+|+||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999743 68999999985 99999999995 99999999999999998754 4444 49
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 420 ~~v~Q~~~l~~ 430 (582)
T 3b60_A 420 ALVSQNVHLFN 430 (582)
T ss_dssp EEECSSCCCCS
T ss_pred eEEccCCcCCC
Confidence 99999998764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-07 Score=97.87 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=47.5
Q ss_pred eEEEEeCCceeeEeeeEEEECCc------EEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 151 NFSISAKGNDLFVNANLLIANGR------RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge------~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
.|++.|++...|.+++..|..+. ++||+||||||||||+++|++..-..+..+.+.+.+++.
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 35566777778888888887776 999999999999999999998533335566666666544
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-06 Score=81.15 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=24.0
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+-+..++..+|++++|+|+||||||||+++|++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3333466789999999999999999999999974
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-06 Score=90.68 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHhCCCChh---hhhcccCCCCHHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 272 ARRILAGLGFSRA---MQDRATKNFSGGWRMRVSLA----RAL-YIEPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 272 ~~~~L~~lgl~~~---~~~~~~~~LSGGqkqRvaLA----raL-~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
+.++|..+++... ....++..+|+|+++|+.++ +++ ..+|++ +|||++|..++..|.+.|.+
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3456666655321 11234667899988888877 665 444454 89999999888888777754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-06 Score=90.93 Aligned_cols=71 Identities=11% Similarity=-0.097 Sum_probs=60.8
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 5899999999964 67999999985 89999999996 99999999999999998764 3343 499999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 82 Q~~~l~ 87 (359)
T 2yyz_A 82 QNYALY 87 (359)
T ss_dssp SSCCCC
T ss_pred cCcccC
Confidence 998664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-06 Score=86.56 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=28.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE---eceee
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY---CEQEV 212 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~---~~q~i 212 (548)
++..|++++|+|||||||||||++|+|. ..|..|.|.+ .+.++
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~--~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPG--LKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTT--CCCC-------------C
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccc--ccccccceecccCCCCCc
Confidence 4457999999999999999999999985 4577788877 55544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-06 Score=79.39 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|++++|+||||||||||+++|++.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999984
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-06 Score=94.62 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=63.9
Q ss_pred CCcEEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 464 PPILGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
...|+++||+|+|++ .+++|+|+||+. .|+++.|.||| |||+|+|+|.++|++|+|+. ++++ +
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 346999999999963 468999999985 89999999995 89999999999999998754 4444 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+.+
T Consensus 419 i~~v~Q~~~lf~ 430 (587)
T 3qf4_A 419 ISAVPQETVLFS 430 (587)
T ss_dssp EEEECSSCCCCS
T ss_pred eEEECCCCcCcC
Confidence 999999998864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=90.55 Aligned_cols=71 Identities=13% Similarity=-0.039 Sum_probs=60.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +++++|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGN-FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSS-SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 5899999999964 67999999985 89999999996 89999999999999998764 3443 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 82 Q~~~l~ 87 (362)
T 2it1_A 82 QNWALY 87 (362)
T ss_dssp TTCCCC
T ss_pred cCcccC
Confidence 998664
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-06 Score=90.37 Aligned_cols=71 Identities=11% Similarity=-0.040 Sum_probs=61.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc--------eeeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN--------VTFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n--------~~~~y~~ 531 (548)
.|+++||+++|++ ..+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. +.+ -.|+|+-
T Consensus 3 ~l~~~~l~~~yg~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGE-VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999965 67999999985 89999999996 89999999999999998764 232 2599999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.|.
T Consensus 82 Q~~~l~ 87 (381)
T 3rlf_A 82 QSYALY 87 (381)
T ss_dssp TTCCCC
T ss_pred cCCcCC
Confidence 998765
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-06 Score=90.94 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=57.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
.|+++||+++|++ +.+|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 5999999999965 67999999985 89999999996 89999999999999998754 3333 599999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 90 Q~~~l~ 95 (372)
T 1v43_A 90 QSYAVW 95 (372)
T ss_dssp C-----
T ss_pred cCcccC
Confidence 998764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9.9e-07 Score=87.38 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCC--CCCCCCCeee-ccce-----------e
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPD--PPPLQPPILG-LHNV-----------T 526 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~--~~~~~~~~~~-~~n~-----------~ 526 (548)
+|+++||+++|++ +++|+|+||+. .|+.+.|.||| |||+|+|+|. ++|++|+|+. ++++ .
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDG-ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECC-EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 6899999999965 68999999986 99999999996 8999999998 7899998754 3332 3
Q ss_pred eeeeeccceee
Q psy11936 527 FAYEGMKPLLV 537 (548)
Q Consensus 527 ~~y~~~~~~~~ 537 (548)
++|+.|+|.+.
T Consensus 82 i~~v~q~~~~~ 92 (250)
T 2d2e_A 82 LFLAFQYPVEV 92 (250)
T ss_dssp BCCCCCCCC-C
T ss_pred EEEeccCCccc
Confidence 78999998764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-06 Score=85.29 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=28.3
Q ss_pred ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 159 ~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
..+|++++++++ .++|||++||||||||+.|+|..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 357899999997 999999999999999999999644
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=75.54 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.2
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CeEEEEec
Q psy11936 308 YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSH 347 (548)
Q Consensus 308 ~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-----~TvIiVSH 347 (548)
..+|+++|+..+.++++.....++..++..++ .++|++||
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 35789999999999999887777777665432 48888888
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-06 Score=86.90 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCeEEEEecCHHHHHhh
Q psy11936 310 EPTLLLLDEPTNHLD---LNAVIWLDNYLQG---WKKTLLIVSHDQSFLDNV 355 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD---~~s~~~L~~~L~~---~~~TvIiVSHD~~~l~~v 355 (548)
.|.+|++||+.+.++ ......|.+.+.. .+.++|++||+..+...+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 388999999987663 3445555565632 356899999988654443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=83.43 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++.+++|+|+|||||||++..|++.. .+...++.+.+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 57899999999999999999998632 23445666655543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=84.66 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=56.9
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
+|+++||+++|++ +|+|+||.. . +.+.|.||| |||+|+|+|.++|++|+|+. ++++ .|+|+.
T Consensus 1 ml~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 3789999999954 599999985 6 899999996 89999999999999998754 3443 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|+|.+.
T Consensus 77 q~~~l~ 82 (240)
T 2onk_A 77 QDYALF 82 (240)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 998664
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3e-06 Score=88.31 Aligned_cols=71 Identities=13% Similarity=-0.065 Sum_probs=60.1
Q ss_pred cEEEEeeEEEeCCCCc--ccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce------------
Q psy11936 466 ILGLHNVTFAYEGMKP--LLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------ 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~--ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------ 525 (548)
.|+++||+++|++ +. +|+|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 5899999999965 56 999999985 89999999996 99999999999999998754 2332
Q ss_pred -eeeeeeccceee
Q psy11936 526 -TFAYEGMKPLLV 537 (548)
Q Consensus 526 -~~~y~~~~~~~~ 537 (548)
.|+|+.|++.+.
T Consensus 82 r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 82 RKIGMVFQTWALY 94 (353)
T ss_dssp SCEEEEETTSCCC
T ss_pred CCEEEEeCCCccC
Confidence 489999998664
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-06 Score=88.63 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceeee
Q psy11936 464 PPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLVD 538 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~~ 538 (548)
.+.|+++||+|+| +++|+++||.. .|+.+.|.||| |||+|+|+|.++|++|.|+... +|+|+.|+|.+.+
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWIMP 112 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCCCS
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCccCc
Confidence 3479999999964 57999999985 89999999996 8999999999999999988754 6999999987653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-07 Score=91.34 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=40.2
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++++++.|++..+|++++|++.+| ++|+||||||||||+++|++.
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3556666777777899999999999 999999999999999999984
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-06 Score=87.69 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=59.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~ 531 (548)
+|+++||+++|++ + +++|+||+. .|+.+.|.||| |||+|+|.|.++|++|.|+. ++++ .|+|+.
T Consensus 1 ml~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 3789999999965 5 999999985 89999999996 99999999999999998764 3343 489999
Q ss_pred ccceee
Q psy11936 532 MKPLLV 537 (548)
Q Consensus 532 ~~~~~~ 537 (548)
|++.+.
T Consensus 79 Q~~~l~ 84 (348)
T 3d31_A 79 QNYSLF 84 (348)
T ss_dssp TTCCCC
T ss_pred cCcccC
Confidence 998664
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.6e-06 Score=83.24 Aligned_cols=130 Identities=9% Similarity=-0.031 Sum_probs=76.9
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL 240 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (548)
-|+.+.--+.+|+.+.|.|++|+|||||+..|+.... .. ...+.|+.-+.. ...+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~-g~~vl~~slE~s---~~~l-------------------- 111 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DN-DDVVNLHSLEMG---KKEN-------------------- 111 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TT-TCEEEEEESSSC---HHHH--------------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hc-CCeEEEEECCCC---HHHH--------------------
Confidence 4555555689999999999999999999988874211 11 134555443211 0000
Q ss_pred hhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
. .++.... .|++.......-..||+++.+|+..|...+.++++++.|+|+
T Consensus 112 ----------------~------------~R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~ 161 (315)
T 3bh0_A 112 ----------------I------------KRLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG 161 (315)
T ss_dssp ----------------H------------HHHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC
T ss_pred ----------------H------------HHHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 0 0000111 122211111111238999999999999999999999999986
Q ss_pred CCCCHHHHHH-HHHHHhhcCCe--EEEEec
Q psy11936 321 NHLDLNAVIW-LDNYLQGWKKT--LLIVSH 347 (548)
Q Consensus 321 n~LD~~s~~~-L~~~L~~~~~T--vIiVSH 347 (548)
+++..... +..+....+.. +|||-|
T Consensus 162 --~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 162 --QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 44444333 33344445556 887766
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-06 Score=88.34 Aligned_cols=71 Identities=14% Similarity=-0.015 Sum_probs=60.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce--------------
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV-------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~-------------- 525 (548)
.|+++||+++|++ +.+|+|+||.. .|+.+.|.||| |||+|+|.|.++|++|.|+.. +++
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 5899999999964 67999999986 89999999996 999999999999999987542 222
Q ss_pred eeeeeeccceee
Q psy11936 526 TFAYEGMKPLLV 537 (548)
Q Consensus 526 ~~~y~~~~~~~~ 537 (548)
.|+|+.|++.+.
T Consensus 82 ~ig~v~Q~~~l~ 93 (372)
T 1g29_1 82 DIAMVFQSYALY 93 (372)
T ss_dssp SEEEECSCCCCC
T ss_pred CEEEEeCCCccC
Confidence 489999998664
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-07 Score=91.98 Aligned_cols=57 Identities=28% Similarity=0.280 Sum_probs=45.1
Q ss_pred EEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 148 KVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 148 ~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
+++++.+.|+...+|++++|++.+| ++|+||||||||||+++|++.. ..+.+.+.+.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc----CCCEEEecHH
Confidence 3556777777778899999999999 9999999999999999999852 2445555443
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.9e-05 Score=84.14 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=43.3
Q ss_pred eEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 151 NFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 151 nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+|++.|++.. .+++|+ +|.+++|+|+|||||||++..|++.. .+..+++.+.+.++
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCS
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeeccc
Confidence 5666676544 678887 89999999999999999999999742 34466777766554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.6e-06 Score=81.75 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=24.1
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
.++.+.+ .+|++++|+||||||||||+++|+
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 3444443 689999999999999999999999
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-06 Score=89.24 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=25.7
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~ 207 (548)
+++.+|++++|+|+||||||||+++|+|. ..+..|.|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~--~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE--LGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc--ccccccceee
Confidence 45568999999999999999999999985 3455666655
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-06 Score=80.84 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=31.8
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
+.+..+|++++|+|+||||||||+++|+|. .|.|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecC
Confidence 345578999999999999999999999974 3456665543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-06 Score=89.85 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=34.0
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|+++|+.+.+|++++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999999999999999973
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00014 Score=72.59 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CeEEEEecCHH
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDL----------NAVIWLDNYLQGWK-------KTLLIVSHDQS 350 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~----------~s~~~L~~~L~~~~-------~TvIiVSHD~~ 350 (548)
++++..|..++.+....|.+|++||+.+-++. .....|...+.... ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999877653 22334445554432 35677888654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=77.15 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=24.4
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|++++|+||||||||||+++|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999999985
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1e-05 Score=86.50 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhh---cCCeEEEEecCH
Q psy11936 309 IEPTLLLLDEPTNHLDL-NAVIWLDNYLQG---WKKTLLIVSHDQ 349 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~-~s~~~L~~~L~~---~~~TvIiVSHD~ 349 (548)
.+|++||+||+..-.+. .+...|...+.. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 556666666543 357899999973
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=74.09 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.0
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999988774
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.73 E-value=6.7e-06 Score=81.45 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=56.1
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
+|+++||+++ ++|+|+||.. .|+.+.|.||| |||+|+|+|.++|+ |.|+. ++++ .++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6899999986 5999999985 99999999996 89999999999999 98754 4443 4899
Q ss_pred eeccceee
Q psy11936 530 EGMKPLLV 537 (548)
Q Consensus 530 ~~~~~~~~ 537 (548)
+.|+|.+.
T Consensus 78 v~q~~~~~ 85 (249)
T 2qi9_C 78 LSQQQTPP 85 (249)
T ss_dssp ECSCCCCC
T ss_pred ECCCCccC
Confidence 99998654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=8e-06 Score=91.91 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=35.6
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSF 351 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~ 351 (548)
..+-..+.-+|++| ||++++..+..++.. +...+.++|+|.|.++.
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 33446788899999 999999988866544 44567889999998875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.6e-05 Score=73.23 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.7
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999999973
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.5e-05 Score=73.02 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|.+++|+|+||||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999974
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=71.40 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.8
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.++.+.+| +.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555554 99999999999999999986
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.61 E-value=2.4e-05 Score=74.91 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=24.8
Q ss_pred eEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 166 NLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 166 sl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
|+...+|.+++|+||||||||||++.|++.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344458999999999999999999999974
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.59 E-value=7.2e-06 Score=86.02 Aligned_cols=49 Identities=31% Similarity=0.326 Sum_probs=44.4
Q ss_pred cEEEEeEEEEeCC-ceeeE--------------eeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 146 DIKVENFSISAKG-NDLFV--------------NANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~--------------~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++||++.|.. +..|+ |+++.|.+|++++|+|++|||||||++.|++
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 4778899999965 56788 8999999999999999999999999999986
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=1.6e-05 Score=83.75 Aligned_cols=74 Identities=11% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCcEEEEeeEEEeC-CCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------e
Q psy11936 464 PPILGLHNVTFAYE-GMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------T 526 (548)
Q Consensus 464 ~~vL~l~~vs~~Y~-~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~ 526 (548)
...|+++||+++|+ ++.++|+|+||+. .|+.+.|.||| |||+|+|.|.++ ++|.|+. ++++ .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995 3468999999985 89999999995 899999999988 7887654 3332 4
Q ss_pred eeeeeccceeee
Q psy11936 527 FAYEGMKPLLVD 538 (548)
Q Consensus 527 ~~y~~~~~~~~~ 538 (548)
|+|+.|+|.+..
T Consensus 96 ig~v~Q~~~lf~ 107 (390)
T 3gd7_A 96 FGVIPQKVFIFS 107 (390)
T ss_dssp EEEESCCCCCCS
T ss_pred EEEEcCCcccCc
Confidence 899999998763
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.57 E-value=1e-05 Score=83.10 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=39.8
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
+.+++|++.+|++++|+|+||+||||++..|++.. .+..++|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 46788989999999999999999999999999742 34567787776654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00026 Score=71.96 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|++|||||||+..|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-05 Score=72.64 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=31.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
..+|.++||+|+||||||||+++|++.. .+..+.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~--~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL--REQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH--hhcCCeEEEeccCc
Confidence 5678999999999999999999999742 23345566555443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=73.66 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy11936 303 LARALYIEP-TLLLLDEPTNHLDLNAVIWLDNYLQGW 338 (548)
Q Consensus 303 LAraL~~~P-~lLLLDEPTn~LD~~s~~~L~~~L~~~ 338 (548)
+..++...| .+|+|||. ..|++.....|..+|...
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 334444334 79999997 678999999999998753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.49 E-value=1.6e-06 Score=89.67 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
++.+++++.|+...+++++++.+..|.+++|+|+||+|||||++.|++.. .+..+.+.+.+.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~--~~~~~~v~v~~~ 92 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL--IREGLKVAVIAV 92 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEee
Confidence 44455666676677889999999999999999999999999999998742 223344554443
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=3.6e-05 Score=72.99 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=25.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.+|.+++|+|++|||||||+++|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999999974
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00023 Score=71.88 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=25.5
Q ss_pred EEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 167 LLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 167 l~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+.++..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567889999999999999999999974
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=70.40 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.9
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.++.+.+ .+.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555655 499999999999999999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=8.8e-05 Score=70.92 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+++|+|+|||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999973
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0001 Score=71.73 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=25.0
Q ss_pred eeEeeeEEEE---CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LFVNANLLIA---NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL~~vsl~I~---~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|.++||++. .|.+++|.|++||||||+++.|+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3566666666 8999999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=67.45 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+|.+++|+|++||||||++++|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999863
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.27 E-value=5.6e-05 Score=82.36 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.5
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+++++|.+.+| +.+|+|+|||||||||.+|..
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 678899999999 999999999999999999964
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=69.04 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999997
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00056 Score=69.29 Aligned_cols=58 Identities=21% Similarity=0.092 Sum_probs=42.0
Q ss_pred EeEEEEeCCceeeEe-eeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 150 ENFSISAKGNDLFVN-ANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 150 ~nls~~y~~~~iL~~-vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++++..|++.. .+ ++|++. |.+++|+|+||+||||++..|++.. .+..+++.+.+.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 34555666543 46 788765 9999999999999999999999742 23455677666554
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=67.91 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=25.8
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++||+...|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788888999999999999999999999985
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=73.70 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=31.9
Q ss_pred EEEEeEEEE-eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 147 I~l~nls~~-y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.+..|+.. |. .+.++.+++.+| +.+|+|+|||||||||.+|+
T Consensus 3 M~l~~L~l~nFr---~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK---SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc---cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555443 33 356777887665 99999999999999999885
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0034 Score=65.49 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=23.9
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|+++.|.|+.|+|||||+..|+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999987763
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.19 E-value=7.5e-05 Score=82.11 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=26.0
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.+|++++|+|+||||||||+++|+|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 4679999999999999999999999985
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00021 Score=65.51 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.1
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.+|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999853
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=70.88 Aligned_cols=129 Identities=13% Similarity=0.063 Sum_probs=75.6
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKL 240 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (548)
-|+.+.--+.+|+.+.|.|++|+|||||+..|+.... ......+.|+.-+.. ...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a-~~~g~~vl~~slE~~---~~~l-------------------- 244 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA-LKEGVGVGIYSLEMP---AAQL-------------------- 244 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSSC---HHHH--------------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEECCCC---HHHH--------------------
Confidence 4555554589999999999999999999988874211 111223444432210 0000
Q ss_pred hhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy11936 241 EAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPT 320 (548)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPT 320 (548)
.. ++ +....|++.... .-..||..+.+|+.-|...+...++++.|.|.
T Consensus 245 ----------------~~------------R~--~~~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~ 292 (444)
T 2q6t_A 245 ----------------TL------------RM--MCSEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD 292 (444)
T ss_dssp ----------------HH------------HH--HHHHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT
T ss_pred ----------------HH------------HH--HHHHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 00 00 011123331111 12469999999999888888888899999764
Q ss_pred CCCCHHHHH-HHHHHHhhcCCeEEEEec
Q psy11936 321 NHLDLNAVI-WLDNYLQGWKKTLLIVSH 347 (548)
Q Consensus 321 n~LD~~s~~-~L~~~L~~~~~TvIiVSH 347 (548)
+++.... .+..+....+..+|||-+
T Consensus 293 --~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 293 --LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4444433 344444455666777644
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=3.3e-05 Score=80.51 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.0
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.+.+.||+..|+.+.++++++|.| +|||+||+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 477888988898888999999987 999999999999999998753
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=67.16 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...+|.+++|+||+|||||||.+.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999999863
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.02 E-value=2e-05 Score=86.60 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=38.5
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++++...|+...++.++++++ +|..++|+||||||||||+++|++.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445666666666788888888 8999999999999999999999974
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00027 Score=71.65 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+.|.||+|+|||||++.|++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999863
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0002 Score=74.22 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
.+.+++|+|++||||||||+.|+|.. .+..+++.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~~~~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML--TERGHKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--hhcCCeEEEEeec
Confidence 56789999999999999999999742 2334555555443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00034 Score=65.10 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=21.3
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++++++|..... .++|+|++|+|||||++.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3678899988776 8899999999999999999974
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=62.85 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.|+|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=6.7e-05 Score=70.52 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=31.3
Q ss_pred EEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 153 SISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 153 s~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|++ ..+++++||....+ .++|+|++|+|||||++.+++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 445655 36888999888776 6899999999999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0014 Score=64.68 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.2
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+..+.-+.|.||.|+|||||++.|+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345667999999999999999999863
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00013 Score=79.27 Aligned_cols=58 Identities=28% Similarity=0.284 Sum_probs=43.4
Q ss_pred EEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceee
Q psy11936 149 VENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEV 212 (548)
Q Consensus 149 l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i 212 (548)
++++...|.+..+|.++++.+..| +.|+||||+|||||+++|++.. ..+.+.+.+.++
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~~~ 100 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGSDF 100 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGGGG
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh----CCCEEEEehhHH
Confidence 445555566667899999999999 9999999999999999999842 234455554443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.90 E-value=8.3e-05 Score=76.18 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=37.4
Q ss_pred EEEEeCCceeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcC
Q psy11936 152 FSISAKGNDLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 152 ls~~y~~~~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~ 195 (548)
++..||...+++.++..|..|++ +.|.||+|+|||||+++|++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33345666788888888999988 999999999999999999974
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00034 Score=71.17 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQS 350 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~ 350 (548)
++.||++|| ...|+......|.+++.+.. ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 88999999999999998763 35677776654
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0034 Score=64.27 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-------H--------HH-------HHHHHHHHhhcCCeEEEEecC
Q psy11936 295 GGWRMRVSLARAL--Y--IEPTLLLLDEPTNHLD-------L--------NA-------VIWLDNYLQGWKKTLLIVSHD 348 (548)
Q Consensus 295 GGqkqRvaLAraL--~--~~P~lLLLDEPTn~LD-------~--------~s-------~~~L~~~L~~~~~TvIiVSHD 348 (548)
-++++.+.++.+| + ..|+++++|=-++..- + .. ...|..+++.++.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656676666 3 3699999998877751 0 01 112334556778999999998
Q ss_pred HH
Q psy11936 349 QS 350 (548)
Q Consensus 349 ~~ 350 (548)
+.
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 66
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00048 Score=63.60 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00028 Score=71.40 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHh----hcCC--eEEEEecCHHHHHhhcCEEE
Q psy11936 293 FSGGWRMRVSLARALY--IEPTLLLLDEPTNHLDLNA-VIWLDNYLQ----GWKK--TLLIVSHDQSFLDNVCNEII 360 (548)
Q Consensus 293 LSGGqkqRvaLAraL~--~~P~lLLLDEPTn~LD~~s-~~~L~~~L~----~~~~--TvIiVSHD~~~l~~vadrIi 360 (548)
+|+|++ .+++++. ..|.+|++ |.+|... ...+.+.+. .++. .+.+++|+..-+..+++.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899886 5566666 78999999 8999754 343433333 2343 55566677666666666554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00042 Score=65.22 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0016 Score=66.62 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.0
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00062 Score=65.97 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999996
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00066 Score=62.95 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=24.0
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+|.+++|+|++||||||+++.|+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999999863
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=62.13 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00015 Score=75.37 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=31.6
Q ss_pred eeeEeeeEEEECCcE--EEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRR--YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~--igLvGpNGsGKSTLLklLaG~ 195 (548)
.+++.+++.+.+|++ ++|+|++|||||||.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 356778888889998 999999999999999999863
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00071 Score=62.38 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0059 Score=65.26 Aligned_cols=129 Identities=10% Similarity=0.026 Sum_probs=73.9
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHhhHHHHHHHHHHHHHh
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLE 241 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (548)
|+.+.--+.+|+.+.|.|+.|+|||||+--|+.... .. ...+.|+.-+..... +
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a-~~-g~~vl~fSlEms~~q---l--------------------- 240 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DN-DDVVNLHSLEMGKKE---N--------------------- 240 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH-HT-TCEEEEECSSSCTTH---H---------------------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH-Hc-CCEEEEEECCCCHHH---H---------------------
Confidence 444433588999999999999999999887764211 11 334555543321110 0
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy11936 242 AADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTN 321 (548)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn 321 (548)
.. ++ +....|++.......-..|+..+.+|+.-|...+.+.+++|.|+|.
T Consensus 241 ---------------~~------------R~--~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~- 290 (444)
T 3bgw_A 241 ---------------IK------------RL--IVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG- 290 (444)
T ss_dssp ---------------HH------------HH--HHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS-
T ss_pred ---------------HH------------HH--HHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-
Confidence 00 00 0011233311111100128888888998888888888999999874
Q ss_pred CCCHHHHHH-HHHHHhhcCCe--EEEEec
Q psy11936 322 HLDLNAVIW-LDNYLQGWKKT--LLIVSH 347 (548)
Q Consensus 322 ~LD~~s~~~-L~~~L~~~~~T--vIiVSH 347 (548)
+++..... +..+..+.+.. +|||-+
T Consensus 291 -~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 291 -QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp -CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred -CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 66665443 33444445556 777654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0014 Score=69.76 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC----C------CCCCeEEEEeceee
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL----K------VPPNIDILYCEQEV 212 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~----~------~~~~g~I~~~~q~i 212 (548)
+++|||+||||||||++.|+|... . .+..+.+.+.++.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999998632 0 13345666666544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0027 Score=61.69 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
+++++++||-- .|+....+.+. .|.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~-~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVAN-ILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHH-HHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHH-HHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999996 48877555554 444558899999994 344556899999875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0078 Score=55.81 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQS 350 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~ 350 (548)
.++.+|++||. ..++......|..++.... ..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 46889999994 6678888888888887653 45677776653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00097 Score=60.33 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00099 Score=63.30 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.8
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.+|.+++|+|++||||||+.+.|++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00061 Score=66.61 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=23.2
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.++++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 344555555555 889999999999999999974
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.016 Score=62.52 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=24.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-+.+|+.+.|.|++|+|||||+--|+-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 588999999999999999999877763
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=62.93 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++.+++++|++|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999998885
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.003 Score=67.45 Aligned_cols=57 Identities=11% Similarity=-0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHH
Q psy11936 296 GWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFL 352 (548)
Q Consensus 296 GqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l 352 (548)
.+.+-..++...+.+++++|+.-....-....-.++.++|+..+..+|+|-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 466777788888888998888776655444455788888988888888888765544
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=59.58 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=61.09 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+++|+|++|||||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999864
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=59.80 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999974
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=58.58 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLa 193 (548)
+++|+|++||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999993
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=70.95 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|+.+.|.||+|+|||||+..++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHH
Confidence 89999999999999999999998875
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.013 Score=71.88 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.8
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.|+.|+|||||+-.++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999887763
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=61.60 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-+++|+|++||||||++++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=60.18 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=59.49 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=62.89 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0072 Score=57.17 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCH----------HHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ----------SFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~----------~~l~~vadrIi~L~ 363 (548)
+.+++++||-- .||+..+..+..+. ..+..||+..+|. ..+..+||.|..|.
T Consensus 81 ~~dvViIDEaq-fl~~~~v~~l~~l~-~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQ-FFDDEIVEIVNKIA-ESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGG-GSCTHHHHHHHHHH-HTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCC-CCCHHHHHHHHHHH-hCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 57999999954 48877766655544 4478999998865 45567899998875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0015 Score=68.73 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.4
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+..|.++||||+||+||||||++|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457789999999999999999999985
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999984
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0022 Score=63.39 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEE
Q psy11936 319 PTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHL 362 (548)
Q Consensus 319 PTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L 362 (548)
|||+++..++..+.+.+.. ...+..+.+|....+...++++..+
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999998777666666543 2345566778888888888776544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=59.48 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999996
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=62.75 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+||||||||||.+.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0031 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=58.49 Aligned_cols=25 Identities=40% Similarity=0.341 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999983
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=60.07 Aligned_cols=20 Identities=40% Similarity=0.765 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999984
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0013 Score=61.84 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++|||||||++.|+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.002 Score=63.18 Aligned_cols=28 Identities=29% Similarity=0.203 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
....+.++.|+|++||||||+.+.|+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4556789999999999999999999863
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=60.31 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...-+.|.||.|+|||||+++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999863
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++-+++|+|+.||||||+.+.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999984
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0036 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0035 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=58.55 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|.|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=58.60 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.6
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..|-+++|+|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999999999999974
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.9
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+|-+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999984
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.004 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|||||||++.|++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0039 Score=57.30 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+|+.||||||+.+.|+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0035 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0049 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0041 Score=62.45 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.|..+.|+||+|||||||.+.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0047 Score=61.55 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|||||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999985
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0054 Score=54.99 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999975
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0051 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+++|+|++|||||||+..|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999885
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0057 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=56.88 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+-+++|+|+.||||||+.+.|+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0043 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0054 Score=57.98 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0056 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=56.93 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|++|+|||||++.+++.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0058 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.014 Score=62.92 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=58.6
Q ss_pred hcccCCCCHHHHHHHHHHH--HHcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCH
Q psy11936 287 DRATKNFSGGWRMRVSLAR--ALYI---------------EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 287 ~~~~~~LSGGqkqRvaLAr--aL~~---------------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~ 349 (548)
.+..+.+||||+|-..+|. ++++ .-.+++|||. |-+|...+...++++++++.=+||++=+
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~- 451 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE- 451 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS-
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc-
Confidence 3447789999999544433 3322 2358999999 9999999999999999999999999988
Q ss_pred HHHHhhcCEEEEEe
Q psy11936 350 SFLDNVCNEIIHLD 363 (548)
Q Consensus 350 ~~l~~vadrIi~L~ 363 (548)
.+..++|.++.|-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 5666788888764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.00012 Score=74.63 Aligned_cols=60 Identities=7% Similarity=-0.030 Sum_probs=50.3
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLV 537 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~ 537 (548)
.|++++|+|+|+ .++|+++||+. .|+.++|.||| |||+++|+|.+ +|.| ++|..|.|.+.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~lf 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSHFW 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSGGG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccccc
Confidence 478899999996 57999999986 99999999995 89999999998 7777 45667766554
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0058 Score=54.00 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0059 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0068 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0062 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0059 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.4
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0062 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0062 Score=56.04 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.042 Score=68.27 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.1
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|.++.|.||+|+|||||+..++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999887764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0065 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0055 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0055 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0063 Score=57.57 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0065 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0065 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0065 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0068 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..-.++|+|+.|+|||||++.+++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0062 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0064 Score=63.38 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHh---hcCCeEEEEecCHHHHH
Q psy11936 309 IEPTLLLLDEPTNHLD---LNAVIWLDNYLQ---GWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD---~~s~~~L~~~L~---~~~~TvIiVSHD~~~l~ 353 (548)
..|-++++||-=+-|+ +.....+.++++ .++..++++||.+..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3588999999998885 556666666654 56789999999998664
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.007 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0064 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+.+++|+|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0065 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0062 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.027 Score=60.02 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=23.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3555566899999999999999999973
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0062 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0073 Score=55.19 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.|.|.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0086 Score=56.02 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-+++|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999984
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0077 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0065 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0078 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0084 Score=57.83 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHH-HHHHHHHhhcC-C-eEEE-EecCHHHHHhh
Q psy11936 293 FSGGWRMRVSLARALYIEPTLLLLDEPTN-HLDLNAV-IWLDNYLQGWK-K-TLLI-VSHDQSFLDNV 355 (548)
Q Consensus 293 LSGGqkqRvaLAraL~~~P~lLLLDEPTn-~LD~~s~-~~L~~~L~~~~-~-TvIi-VSHD~~~l~~v 355 (548)
.+.|...+... ..+.+.++|++||.-. ++|.... ..+..++.... . ++++ .|.+.+.+.++
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~ 226 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEY 226 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHH
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHH
Confidence 45577666643 3689999999999976 5777665 34445554432 2 3333 34554444443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0068 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0077 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0045 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999985
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0078 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0079 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-+++|+|+.||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0079 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0081 Score=56.76 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-++||+|+.||||||+.+.|+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.009 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
+.++|+|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0082 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.009 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0084 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=55.96 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 157 KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 157 ~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.....+...-+.+ .|..+.|+||+|||||||...|+..
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444566655555 6889999999999999999999853
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0072 Score=57.57 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999984
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0085 Score=58.47 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+|||.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999985
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.009 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0091 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0092 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999877654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.01 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|.||+|+|||||++.|+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999985
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0093 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0085 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0092 Score=62.11 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
|-.++|||.+|+|||||++.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0095 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0099 Score=58.44 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999984
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=56.82 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.026 Score=59.95 Aligned_cols=28 Identities=39% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445555899999999999999999963
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.023 Score=61.37 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=22.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+....-+.|.||+|+|||||+++|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 345556899999999999999999863
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.021 Score=65.76 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
.+.+|||||. ..+++.....|.++|..
T Consensus 660 ~~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 660 PYSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp SSEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred CCeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 3579999999 56899999999999874
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=59.93 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
+++|||.+|+|||||++.|.|..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 699999999999999999998643
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.015 Score=59.38 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=32.0
Q ss_pred CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 158 GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 158 ~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
....+++..+.+ .|.-++|+|+||+|||||...|.+.+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 345778888888 78889999999999999999888643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=58.58 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999985
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=59.38 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
-+|+|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0093 Score=62.17 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+||||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0081 Score=55.97 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.++|||++|+|||||++.++|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.027 Score=59.90 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.-+.|.||.|||||+|.++||+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3555566899999999999999999973
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999875
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=54.79 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|||.+|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=57.54 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+.=.++|+|+.|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998743
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.016 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=56.94 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++-+++|+|+.||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999974
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=55.76 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.014 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=53.23 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.014 Score=57.60 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.015 Score=54.19 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999863
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0075 Score=56.83 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~ 196 (548)
-+++|+|..|+|||||++.|+|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.+++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.011 Score=58.35 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|.+|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988753
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999964
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=58.97 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|+|||||++.|++..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.01 Score=54.41 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|||||||++.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.015 Score=53.37 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0078 Score=60.52 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-++||.|++||||||+.+.|+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999984
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.019 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|+||.|+|||||++.++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999975
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.015 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.016 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~~ 196 (548)
=.++|+|+.|+|||||++.|++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.018 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=55.34 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|..|+|||||++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.68 E-value=0.02 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.1 Score=50.86 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=42.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
.+.+++++||---..| +..+.+.+.+.+..||+.-+| ...+..+||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 777778888888999999999 334556899998874
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.057 Score=56.85 Aligned_cols=27 Identities=44% Similarity=0.589 Sum_probs=22.1
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.+-.=+.|.||.|||||+|.++||+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 333344889999999999999999973
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999888743
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=61.27 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=28.0
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+++.+ +.+-+|++++|+|++|+|||||++.|+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 34444 6778999999999999999999999875
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.018 Score=57.24 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.018 Score=54.30 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+++.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.013 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|+.|+|||||++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.024 Score=54.50 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+-++.|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=59.00 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+||+|||||||.+.|+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 799999999999999999985
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=64.19 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-|.+|..+.|.||.|+|||||...++.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999988863
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.023 Score=54.47 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.2
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-.|-++.|.|+.||||||+++.|+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999974
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.00055 Score=62.87 Aligned_cols=65 Identities=5% Similarity=-0.189 Sum_probs=48.5
Q ss_pred EeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccceeee-----eeecccee
Q psy11936 470 HNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNVTFA-----YEGMKPLL 536 (548)
Q Consensus 470 ~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~~~~-----y~~~~~~~ 536 (548)
+++++.|++ +.+++++||.. .|..+.|.||| |||+|+|+|.+ |++|.|+. +.++.-. |..||+-+
T Consensus 11 ~~~~~~~g~-~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFGK-KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHH-HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 456778854 57899999985 88999999986 89999999999 88887654 4555322 45566544
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.019 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
.++|+|..|+|||||++.|+|..+
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999998643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.024 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||.+|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.026 Score=52.77 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=32.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSF 351 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~ 351 (548)
..|.+|++||.-. ||......|..++... +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999755 8888888888888764 3578888887653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.021 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
-.++|+|.+|+|||||++.|+|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58899999999999999999975
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=55.96 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|+|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.043 Score=51.28 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.9
Q ss_pred eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 160 DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 160 ~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..++..-+.+ .|.-+.|.|++|+|||||.-.|...
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3455544444 7888999999999999999888753
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.019 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.++|+|+.|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.023 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+..+.|+||.|+|||||++.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999999975
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.019 Score=55.83 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+|-+|.|.|+.||||||+++.|+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999999974
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.026 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-++.|.|++||||||+++.|+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999974
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.066 Score=51.54 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecC----------HHHHHhhcCEEEEEe
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHD----------QSFLDNVCNEIIHLD 363 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD----------~~~l~~vadrIi~L~ 363 (548)
+.+++++||--- ||...+..|. .|...+..||+.-+| ...|..+||.|..|.
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l~-~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVVQ-VLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHHH-HHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHHHHH-HHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999866 8877775444 444557899999884 445667899998875
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.011 Score=55.42 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++|+|+.|+|||||++.|++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.026 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+++|.|..||||||+++.|+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 366899999999999999999985
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.072 Score=57.01 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+.+-.=+.|.||.|||||+|.++||+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4555666889999999999999999973
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 548 | ||||
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-23 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-14 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-12 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-11 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 107 bits (268), Expect = 5e-27
Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 14/225 (6%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + +L + +G L+GP+G GKTT LR IA L+ P I
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIY 61
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
++ V + + + ++ + L + +L+ +
Sbjct: 62 IGDKLVADPEK---GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF----PLKLRKVPRQ 114
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ R R + LG + + +R + SGG R RV+L RA+ +P + L+DEP ++LD
Sbjct: 115 EIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + + T + V+HDQ + + I +++ L
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (262), Expect = 3e-26
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNID 204
V++K+EN + NL I +G L+GP+G GKTT LR IA L+ P
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGR 62
Query: 205 ILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIG 264
I + +++ + L + ++ + A + + ++K
Sbjct: 63 IYFGDRD---------VTYLPPKDRNISMVFQ----SYAVWPHMTVYENIAFPLKIKKFP 109
Query: 265 ADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD 324
D + R R L + +R SGG R RV++ARA+ +EP +LL+DEP ++LD
Sbjct: 110 KDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 325 LNAVIWLDNYLQ----GWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + ++ K T + V+HDQ + + I +++ +L
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (256), Expect = 3e-25
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 8/227 (3%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V + G+++ +L G ++G +G GK+T LR I L+ P I+
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAII 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKL--EAADFSSEQ-QEQLKEIYEELKAI 263
Q + + + + L + +S E + E ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
A RA + LA +G Q + + SGG + RVS+ARAL +EP +LL DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 324 DLNAVIWLDNYLQGWK---KTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D V + +Q KT+++V+H+ F +V + +I L Q K+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (252), Expect = 9e-25
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 29/237 (12%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA------------- 193
++ EN ++ + G ++GPNG GK+TL+ I
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 194 SRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQL 253
++D+ ++ + ++ + + + + F + +
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 254 KEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTL 313
+E+ E +A +IL L S + DR SGG V + RAL P +
Sbjct: 125 EEMVE------------KAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKM 171
Query: 314 LLLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+++DEP + + N++ K T LI+ H + N + + + ++
Sbjct: 172 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 97.6 bits (243), Expect = 1e-23
Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK++N + + K + + A NL I G ++GP+G GK+T+L I L P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTE 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADV----KRTELLAECAKLEAADFSSEQQEQLKEIYE 258
++ + D + + + + ++ L+ ++ + +L I++
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP--------LLTALENVELPLIFK 111
Query: 259 ELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDE 318
A+ + RA L + SGG + RV++ARAL P ++L D+
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 319 PTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
PT LD + L+ KT+++V+HD + II+L ++
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 1e-23
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 20/225 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++++N + + + + NL I G VGP+G GK+TLLR IA L+ + D+
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLF 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
E+ + +D E + + L + E F + KE+ +
Sbjct: 59 IGEKRM--NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ------- 109
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
R ++ L + + DR K SGG R RV++ R L EP++ LLDEP ++LD
Sbjct: 110 ----RVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + + +T++ V+HDQ + ++I+ LD ++
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 1e-23
Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
D++ N + + G ++ N NL I G+ LVG +G GK+T+ I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FYDIDEG 70
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL ++ + L + A + Y +
Sbjct: 71 HILMDGHDL-------------REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 264 GADSAEPRARRILAGLGFSRAMQD-------RATKNFSGGWRMRVSLARALYIEPTLLLL 316
+ E A R+ + F M + SGG R R+++ARAL + +L+L
Sbjct: 118 SREQIE-EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 176
Query: 317 DEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
DE T+ LD + + L +K T L+++H S ++ +EI+ ++ +
Sbjct: 177 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGII 228
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 97.2 bits (242), Expect = 2e-23
Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 13/224 (5%)
Query: 147 IKVENFSIS-AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDI 205
+ + + + + + GP+G GK+T+ + P +I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER--FYQPTAGEI 59
Query: 206 LYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGA 265
Q + L S + V + + E + E +++++ L A
Sbjct: 60 TIDGQPIDNISLENWRSQI-GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 266 DSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDL 325
S + SGG R R+++ARA P +L+LDE T LD
Sbjct: 119 RS------FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 326 NAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ + L K T L+++H S + + ++I +++ ++
Sbjct: 173 ESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQI 215
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 96.6 bits (240), Expect = 3e-23
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+ V++ ++ + I G +GL+GPNG GKTT LR I++ L P + +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVT 60
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ VV + K L E A + + Q + A +
Sbjct: 61 VFGKNVVEEP--------HEVRKLISYLPEEAGA----YRNMQGIEYLRFVAGFYASSSS 108
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
E R G ++DR +S G ++ +ARAL + P L +LDEPT+ LD+
Sbjct: 109 EIEEMVERATEIAGLGEKIKDRV-STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 327 AVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ L+ + T+L+ SH+ ++ +C+ I + +
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 211
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.5 bits (240), Expect = 3e-23
Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
++V++ + +L + G+ L+G NG GKTT L IA L I+
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA--GLVRAQKGKII 64
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ Q++ + + A V E E + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVP-----------EGRRIFPELTVYENLMMGAYNRKDKE 113
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ I + + + SGG + +++ RAL P LL++DEP+ L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
Query: 327 AVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
V + +Q + T+L+V + V + L+ ++
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.4 bits (240), Expect = 4e-23
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 15/226 (6%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
I +++ S N+ + + NL I G VG +G GK+TL+ I +
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR--FYDVTSG 73
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
IL + ++ + + V++ +L E +E+ E K
Sbjct: 74 QILIDGHNIKDFLTGSLRNQI-GLVQQDNILFSDTVKENILLGRPTATD-EEVVEAAKMA 131
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
A + G SGG + R+S+AR P +L+LDE T+ L
Sbjct: 132 NAHD---FIMNLPQGY---DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 185
Query: 324 DLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
DL + + L K T LIV+H S + + ++I+ ++ +
Sbjct: 186 DLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHI 230
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.7 bits (238), Expect = 5e-23
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 19/229 (8%)
Query: 147 IKVENFSISAKGNDLFVNA----NLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
IK+ N + + A +L + G+ YG++G +G GK+TL+R + L+ P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTE 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
+L Q +LT + +R + + S + EL
Sbjct: 60 GSVLVDGQ-----ELTTLSESELTKARRQ--IGMIFQHFNLLSSRTVFGNVALPL-ELDN 111
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
D + R +L+ +G D N SGG + RV++ARAL P +LL DE T+
Sbjct: 112 TPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 323 LD----LNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD + + L + + T+L+++H+ + +C+ + + +L
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.2 bits (234), Expect = 4e-22
Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 51/294 (17%)
Query: 128 ISQMEKTGGQLAALENAVDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTT 187
+ +++++ G + ++ + + GN + N NL I G + G G GKT+
Sbjct: 20 LEKVQQSNGDRKHSSDENNVSFSHLCLV--GNPVLKNINLNIEKGEMLAITGSTGSGKTS 77
Query: 188 LLRHIASRDLK-----VPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEA 242
LL I +L+ + + + +C Q T E+++ K
Sbjct: 78 LLMLIL-GELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 136
Query: 243 ADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVS 302
+ + E + SGG R R+S
Sbjct: 137 LQ---QDITKFAEQDN-------------------------TVLGEGGVTLSGGQRARIS 168
Query: 303 LARALYIEPTLLLLDEPTNHLDL---NAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEI 359
LARA+Y + L LLD P +LD+ V KT ++V+ L ++I
Sbjct: 169 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRK-ADKI 227
Query: 360 IHLDQ---------QKLYYYKGNYSMFKKMYAQKSKERMKEFEKQEKRIKELKA 404
+ L Q +L + ++ K+ + ++ E + + L+
Sbjct: 228 LILHQGSSYFYGTFSELQSLRPDF--SSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 90.7 bits (225), Expect = 3e-21
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 146 DIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNI 203
DI N K + + N NL I G G+VG +G GK+TL + I +P N
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR--FYIPENG 58
Query: 204 DILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAI 263
+L ++ D + + ++ LL + + + +L
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 264 GADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHL 323
I + SGG R R+++ARAL P +L+ DE T+ L
Sbjct: 119 --------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 324 DLNAVIWLDNYLQGWKK--TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
D + + + K T++I++H S + N + II +++ K+
Sbjct: 171 DYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (222), Expect = 1e-20
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 17/239 (7%)
Query: 136 GQLAALENAVDIKVENFSIS-AKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHI 192
G L L ++ ++ S + D+ V + G LVGPNG GK+T+ +
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 193 ASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQ 252
+ L P +L + + + + + A V + + + E + Q+
Sbjct: 61 QN--LYQPTGGQLLLDGKPLPQYEHRYLHRQV-AAVGQEPQVFGRSLQENIAYGLTQKPT 117
Query: 253 LKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPT 312
++EI GA I D A SGG R V+LARAL +P
Sbjct: 118 MEEITAAAVKSGAH------SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC 171
Query: 313 LLLLDEPTNHLDLNAVIW----LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+L+LD+ T+ LD N+ + L + + +++L+++ S ++ + I+ L+ +
Sbjct: 172 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAI 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 88.2 bits (218), Expect = 2e-20
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 VDIKVENFSISAKGNDLFV--NANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPN 202
V I V+N S K + N N+ I NG R+G++GP+G GKTT +R IA L VP
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPST 59
Query: 203 IDILYCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKA 262
++ + ++ V ++ + ++ + ++ ++ + L + E
Sbjct: 60 GELYFDDRLVASNG----KLIVPPEDRKIGMVFQTWALYPNLTAFEN----IAFPLTNMK 111
Query: 263 IGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNH 322
+ + R + L + + + SG + RV+LARAL +P+LLLLDEP ++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 323 LDLNAVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
LD TLL+VSHD + + + + + L + KL
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 4e-20
Identities = 51/232 (21%), Positives = 81/232 (34%), Gaps = 36/232 (15%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++++ + S + L + + G LVGPNG GK+TLL +A I
Sbjct: 4 MQLQDVAESTRLGPL----SGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQ 56
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
+ Q + A T + A A + ++ L D
Sbjct: 57 FAGQPLEAWSATKL-----------------ALHRAYLSQQQTPPFATPVWHYLTLHQHD 99
Query: 267 -SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALY-------IEPTLLLLDE 318
+ + L + R+T SGG RV LA + LLLLDE
Sbjct: 100 KTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 158
Query: 319 PTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQSFLDNVCNEIIHLDQQKL 367
P N LD+ LD L + +++ SHD + + L K+
Sbjct: 159 PMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 84.2 bits (208), Expect = 2e-19
Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 29/219 (13%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
+++ + S+ + + I G GPNG GKTTLL+ I++ P +I+
Sbjct: 3 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEII 59
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
Y VK + S E + G
Sbjct: 60 YNGVP-------------ITKVKGKIFFLPEEIIVPRKISVEDY-----LKAVASLYGVK 101
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
+ L + + S G RV LA L + + +LD+P +D +
Sbjct: 102 VNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159
Query: 327 AV--IW--LDNYLQGWKKTLLIVSHDQSFLDNVCNEIIH 361
+ + + L+ ++ + S+ D E +H
Sbjct: 160 SKHKVLKSILEILKEKGIVIISSREELSYCDVN--ENLH 196
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.9 bits (186), Expect = 3e-16
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 24/225 (10%)
Query: 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDIL 206
I++E+ S K L N +L + +G + ++GP G GKT L IA VP + IL
Sbjct: 2 IEIESLSRKWKNFSLD-NLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRIL 58
Query: 207 YCEQEVVADDLTAVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD 266
++ + L + + + L + E + +
Sbjct: 59 LDGKD---------VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----- 104
Query: 267 SAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLN 326
R L + DR SGG + RV+LARAL P +LLLDEP + LD
Sbjct: 105 --PKRVLDTARDLKI-EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 327 AVIWLDNY----LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
+ K T+L ++HDQ+ + + I + KL
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 71.2 bits (174), Expect = 1e-14
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 159 NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLT 218
+ +N + + L+GP G GK+ L IA + P ++ ++
Sbjct: 12 GNFRLNVDFEM-GRDYCVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADI------ 62
Query: 219 AVESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAG 278
+ L + + + + L L+ + + R R +
Sbjct: 63 ---TPLPPERRGIGFVPQDYALFPHLSVYRNIA------YGLRNVERVERDRRVREMAEK 113
Query: 279 LGFSRAMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLD---LNAVIWLDNYL 335
LG + + DR SGG R RV+LARAL I+P LLLLDEP + +D ++ ++
Sbjct: 114 LGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172
Query: 336 QGW-KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367
Q +L V+HD + +E+ + ++
Sbjct: 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 59.2 bits (142), Expect = 7e-11
Identities = 20/197 (10%), Positives = 41/197 (20%), Gaps = 42/197 (21%)
Query: 174 RYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKADVKRTEL 233
+ + G G GKTTL++ I L I E
Sbjct: 2 KIIITGEPGVGKTTLVKKIV-ERLG-KRAIGFWTEEVRDP-------------------- 39
Query: 234 LAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNF 293
E K + ++ + +
Sbjct: 40 -----------------ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82
Query: 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDL--NAVIWLDNYLQGWKKTLLIVSHDQSF 351
+ + A ++++DE + + ++ +
Sbjct: 83 LAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV 142
Query: 352 LDNVCNEIIHLDQQKLY 368
+ EI L L
Sbjct: 143 HP-LVKEIRRLPGAVLI 158
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.61 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.18 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.86 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.74 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.62 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.55 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.43 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.41 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.41 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.38 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.36 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.36 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.35 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.34 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.34 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.32 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.3 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.28 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.24 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.19 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.13 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.08 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.82 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.26 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.23 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.18 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.07 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.92 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.91 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.9 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.87 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.85 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.83 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.76 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.73 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.72 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.67 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.6 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.59 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.58 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.58 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.56 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.47 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.47 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.42 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.37 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.35 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.28 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.27 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.25 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.24 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.2 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.19 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.18 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.18 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.14 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.12 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.09 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.08 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.08 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.03 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.96 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.95 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.95 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.95 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.92 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.87 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.81 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.81 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.68 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.66 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.6 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.56 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.55 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.52 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.49 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.41 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.33 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.22 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.14 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.12 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.11 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.05 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.02 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.96 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.95 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.93 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.9 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.88 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.79 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.74 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.71 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.7 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.66 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.56 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.54 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.53 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.47 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.44 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.37 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.3 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.28 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.25 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.24 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.21 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.19 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.17 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.11 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.03 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.02 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.99 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.95 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.93 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.91 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.89 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.88 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.82 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.8 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.8 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.79 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.78 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.69 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.66 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.65 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.58 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.48 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.47 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.45 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.39 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.35 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.3 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.2 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.1 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.07 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.03 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.59 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.27 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.22 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.06 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.02 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.0 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.94 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.89 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.56 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.38 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.75 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.39 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.7 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.36 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.0 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.74 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.72 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.63 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.56 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.06 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.26 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.05 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.61 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.86 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.81 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.73 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.68 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.71 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.57 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.46 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.26 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.71 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.19 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.52 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 80.78 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-48 Score=383.98 Aligned_cols=216 Identities=26% Similarity=0.342 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+|+||||+|++||++||+|||||||||||++|+|. ..|++|+|.++++++.......
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl--~~p~sG~I~i~g~~i~~~~~~~------ 77 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKD------ 77 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCGGG------
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC--CCCCCCEEEEcceecccCCccc------
Confidence 59999999999999999999999999999999999999999999999985 5789999999999885433211
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..++++|.. ..+...++.+++... ..+........+.++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 78 ---r~ig~v~Q~~---~l~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 78 ---RNISMVFQSY---AVWPHMTVYENIAFP-LKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp ---GTEEEEEC---------CCCHHHHHHTT-CC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHH
T ss_pred ---ceEEEEeech---hhcccchHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHh
Confidence 1112222221 222345666655321 1112222234567889999999997 4789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||||++|++|+|+..+.+.+.|
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999888887654 789999999999999999999999999999875444444
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-49 Score=383.73 Aligned_cols=215 Identities=24% Similarity=0.325 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHHh
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLKA 226 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~~ 226 (548)
|+++||+++|++..+|+||||+|++||++||+|||||||||||++|+|. ..|.+|+|.++++++.......
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl--~~p~sG~I~i~g~~i~~~~~~~------- 71 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--ETITSGDLFIGEKRMNDTPPAE------- 71 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEESSSCCTTSCGGG-------
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCCEEEECCEECCCCchhh-------
Confidence 6899999999999999999999999999999999999999999999984 5789999999999875432110
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHHH
Q psy11936 227 DVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLARA 306 (548)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAra 306 (548)
+..++++|. ...+...++.+++... ..+..........++.++|+.+++. ...++++.+|||||||||+||||
T Consensus 72 --r~ig~v~Q~---~~l~~~~tv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 72 --RGVGMVFQS---YALYPHLSVAENMSFG-LKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp --TCEEEECSS---CCC----------------------CHHHHHHHHHHHHC----------------------CHHHH
T ss_pred --ceeeeeccc---cccccchhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHH
Confidence 111122211 1122344555555332 1223334455678899999999998 46899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
|+.+|++|||||||++||+.+...+.++|.+ .+.|||+||||++++..+||||++|++|+|+.++.+.+.|
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999888887765 4789999999999999999999999999999875555444
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-48 Score=380.60 Aligned_cols=221 Identities=24% Similarity=0.344 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+.. .+|+||||+|++||++||+|||||||||||++|+|+ ..|++|+|.++++++...+...+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl--~~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS--SCCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC--ccccCCceEEcCeEeeeCChhhhh
Confidence 48999999999653 589999999999999999999999999999999984 578999999999998654432221
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRV 301 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRv 301 (548)
.. .+..++++|. .+.+...++.+++.... .+......+...++.++|+.+|+.+ ..++++.+|||||||||
T Consensus 79 ~~----rr~ig~VfQ~---~~l~~~~tv~eni~~~l-~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 79 KA----RRQIGMIFQH---FNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRV 149 (240)
T ss_dssp HH----HHHEEECCSS---CCCCTTSBHHHHHHHHH-HTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSCCCHHHHHHH
T ss_pred hh----hccccccccc---cccCCCccHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHH
Confidence 11 0112222222 12334567777765422 2223344455688999999999984 67999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 302 SLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 302 aLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||||++|++|+|++.+.+.+.|
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999888888653 789999999999999999999999999999876555444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.8e-48 Score=381.24 Aligned_cols=222 Identities=22% Similarity=0.294 Sum_probs=175.6
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++||+++||+..+|+||||+|++||++||+|||||||||||++|+|. ..|++|+|.+++.++..........
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl--~~p~sG~I~~~g~~i~~~~~~~~~~--- 77 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVP--- 77 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--SCCSEEEEEETTEEEEEGGGTEECC---
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC--CCCCCCEEEECCEEecccchhhhcc---
Confidence 58999999999999999999999999999999999999999999999985 5789999999998875422110000
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+..++++|. ...+...++.+++.... .+......+.+.++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 78 ~~~r~ig~v~Q~---~~L~~~ltV~eni~~~~-~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 78 PKDRDIAMVFQS---YALYPHMTVYDNIAFPL-KLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GGGSSEEEECSC---CCCCTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccccceecccc---hhhcchhhhhHhhhhhH-HHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHH
Confidence 000111222221 12234557777765432 222233344567899999999997 4679999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQG----WKKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~----~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.++..+.++|.+ ++.|||+||||++++..+||||++|++|+|++.+.+.+.|
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999888888765 4789999999999999999999999999999875544444
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-47 Score=374.98 Aligned_cols=215 Identities=24% Similarity=0.272 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeCCc----eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHH
Q psy11936 146 DIKVENFSISAKGN----DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVE 221 (548)
Q Consensus 146 ~I~l~nls~~y~~~----~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~ 221 (548)
+|+++||+++|+.. .+|+||||+|++||++||+|||||||||||++|+|. ..|.+|+|.+++.++...+.....
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl--~~p~sG~I~~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYIDNIKTNDLDDDELT 78 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC--CCCCcceeEECCEEcCcCChhhcc
Confidence 48999999999542 379999999999999999999999999999999984 578999999999998765443322
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHhCCCChhhhhcccCCCCHHHH
Q psy11936 222 SVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGAD---SAEPRARRILAGLGFSRAMQDRATKNFSGGWR 298 (548)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqk 298 (548)
.... ...++++|. ....+..++.+++.... .+...+.. ....++.++|+.+||.+...+++|.+||||||
T Consensus 79 ~~r~---~~ig~v~Q~---~~l~~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 79 KIRR---DKIGFVFQQ---FNLIPLLTALENVELPL-IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHH---HHEEEECTT---CCCCTTSCHHHHHHHHH-HTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred hhhc---ceEEEEecc---hhhCcCccHHHHHhHHH-HHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHH
Confidence 1110 111222221 12334567776654221 11111222 23456788999999987677999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
|||+|||||+.+|+||||||||++||+.++..++++|.++ +.|||+||||++++ ++||||++|++|+|+..
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~ 226 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998888754 67999999999987 69999999999999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-47 Score=382.14 Aligned_cols=227 Identities=26% Similarity=0.328 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhH------
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTA------ 219 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~------ 219 (548)
.|+++||+++||+..+|+||||+|.+||++||+||||||||||+++|+|. ..|.+|+|.++|+++.......
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl--~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC--ccCCCCCEEECCEEeccCCccchhcccc
Confidence 38999999999999999999999999999999999999999999999984 5788999999999875321100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHH
Q psy11936 220 VESVLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRM 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkq 299 (548)
-........+..++++|. ...+...++.+++.................++.++|+.+|+.+...++++.+|||||+|
T Consensus 80 ~~~~~~~~r~~ig~vfQ~---~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~Q 156 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 156 (258)
T ss_dssp CHHHHHHHHHHEEEECSS---CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH
T ss_pred cHhHHHHHhcceEEEEec---hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHH
Confidence 000000001111111111 12233456666654321111111223345678899999999876678899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+|++.+.+.+.
T Consensus 157 Rv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev 236 (258)
T d1b0ua_ 157 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236 (258)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999888888754 57999999999999999999999999999987544444
Q ss_pred H
Q psy11936 377 F 377 (548)
Q Consensus 377 f 377 (548)
|
T Consensus 237 ~ 237 (258)
T d1b0ua_ 237 F 237 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.7e-47 Score=371.48 Aligned_cols=212 Identities=27% Similarity=0.288 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++|||++|++ .+|+||||+|++||++||+|||||||||||++|+|. ..|++|+|.++++++..... .+.
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl--~~p~sG~I~~~G~~i~~~~~--~~r--- 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--HVPDSGRILLDGKDVTDLSP--EKH--- 72 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--SCCSEEEEEETTEECTTSCH--HHH---
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--cCCCCCEEEEccEeccccch--hHh---
Confidence 4899999999987 589999999999999999999999999999999984 57899999999998854321 111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..++++|. ...+...++.+++.... .+. + .....++.++++.+++. ...++++.+|||||||||+|||
T Consensus 73 ----~ig~v~Q~---~~l~~~~tV~enl~~~~-~~~--~-~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAr 140 (229)
T d3d31a2 73 ----DIAFVYQN---YSLFPHMNVKKNLEFGM-RMK--K-IKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALAR 140 (229)
T ss_dssp ----TCEEECTT---CCCCTTSCHHHHHHHHH-HHH--C-CCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHH
T ss_pred ----cceeeccc---cccCccccHHHHHHHHH-hhc--c-ccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhh
Confidence 11222221 12334567777765322 122 2 23467899999999997 4689999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+||||++|++|++++.+.+.+.|
T Consensus 141 aL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999888888653 679999999999999999999999999999864443333
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.4e-48 Score=381.54 Aligned_cols=222 Identities=26% Similarity=0.331 Sum_probs=174.1
Q ss_pred cEEEEeEEEEe--CCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISA--KGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y--~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+++| +...+|+||||+|++||++||+|||||||||||++|+|. ..|.+|+|.++++++...+.....
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl--~~p~~G~I~~~g~~i~~~~~~~~~-- 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--DVPSTGELYFDDRLVASNGKLIVP-- 78 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--SCCSEEEEEETTEEEEETTEESSC--
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC--cCCCCceEEECCEEeecCchhhcc--
Confidence 48999999999 456799999999999999999999999999999999984 578999999999988543211100
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHH
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...+..++++|. ...+...++.+++..... +........++++.++|+.+|++ ...++++.+|||||||||+|
T Consensus 79 --~~rr~ig~vfQ~---~~L~p~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 79 --PEDRKIGMVFQT---WALYPNLTAFENIAFPLT-NMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp --GGGSCEEEEETT---SCCCTTSCHHHHHHGGGT-TSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred --hhhccceEEecc---ccccccccHHHHhhhhhH-hhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHH
Confidence 000112222221 122334567776643211 11122233567899999999997 57899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||||+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||||++|++|+|+..+.+.+.|.
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999998888877654 6899999999999999999999999999998766655553
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-46 Score=372.24 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
+|+++||+++||+..+|+||||+|.+||++||+||||||||||+++|+|. ..|++|+|.+.++++...........
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl--~~p~~G~I~~~g~~i~~~~~~~~~~~-- 79 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELYHY-- 79 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHHHH--
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC--CcCCCcEEEECCEeccchhHHHHHHh--
Confidence 69999999999999999999999999999999999999999999999985 57889999999999865543322110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHH--------HHHH-HhcC-CC--ChHHHHHHHHHhCCCChhhhhcccCCC
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEI--------YEEL-KAIG-AD--SAEPRARRILAGLGFSRAMQDRATKNF 293 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~--------~~~l-~~~~-~~--~~~~~~~~~L~~lgl~~~~~~~~~~~L 293 (548)
...+.++. ...+...++.+++... ...+ .... .. ....++.++|+.+++.. ..++++.+|
T Consensus 80 ----gi~~v~Q~---~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~L 151 (254)
T d1g6ha_ 80 ----GIVRTFQT---PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGEL 151 (254)
T ss_dssp ----TEEECCCC---CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGS
T ss_pred ----cCCccCCc---cccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-hccCchhhC
Confidence 00011110 0112234455544210 0011 1111 11 22356788999999974 678999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEE
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYY 370 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~ 370 (548)
||||||||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||||++|++|+++..
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence 999999999999999999999999999999999999988888654 68999999999999999999999999999987
Q ss_pred cCCHHHH
Q psy11936 371 KGNYSMF 377 (548)
Q Consensus 371 ~g~y~~f 377 (548)
+.+-+.+
T Consensus 232 g~~~e~~ 238 (254)
T d1g6ha_ 232 GRGEEEI 238 (254)
T ss_dssp EESHHHH
T ss_pred ecHHHHh
Confidence 5444433
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.8e-46 Score=364.67 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|.++||+++|+++.+|+||||+|.+|+++||+|||||||||||++|+|. ..|.+|+|.++++++.... .....
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~--~~p~~G~i~i~G~~i~~~~-~~~~~--- 75 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTVFGKNVVEEP-HEVRK--- 75 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTCH-HHHHT---
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEECcEecccCh-HHHHh---
Confidence 38899999999999999999999999999999999999999999999985 5789999999998865322 11111
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
..+++++ ....+...++.+++... ..+...........++.+++.+++.+ ..++++.+|||||||||+|||
T Consensus 76 ----~i~~vpq---~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 76 ----LISYLPE---EAGAYRNMQGIEYLRFV-AGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp ----TEEEECT---TCCCCTTSBHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHH
T ss_pred ----hEeEeee---ccccCCCccHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHHHHHHHHHHH
Confidence 1111111 11222345666665432 22333333334567788999999974 678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMFK 378 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f~ 378 (548)
||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++.. |+.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~-g~~~el~ 221 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEELK 221 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHHH
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 999999999999999999999999999988764 58999999999999999999999999999976 6666554
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.6e-46 Score=365.30 Aligned_cols=218 Identities=20% Similarity=0.210 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++||+..+|+||||+|++||++||+||||||||||+++|+|. ..|.+|+|.++++++...........
T Consensus 5 ~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl--~~p~~G~I~~~G~~i~~~~~~~~~r~- 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIFNGQDITNKPAHVINRM- 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEECTTCCHHHHHHT-
T ss_pred eEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEecccccccccHHHHHHh-
Confidence 479999999999999999999999999999999999999999999999984 57889999999998865443221100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-CCChhhhhcccCCCCHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-GFSRAMQDRATKNFSGGWRMRVSL 303 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSGGqkqRvaL 303 (548)
...+.++ ....+...++.+++... .............+..++..+ ++. ...++++.+|||||||||+|
T Consensus 82 -----gi~~~~q---~~~l~~~ltv~en~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 82 -----GIALVPE---GRRIFPELTVYENLMMG--AYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp -----TEEEECS---SCCCCTTSBHHHHHHGG--GTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHH
T ss_pred -----cccccCc---ccccCCcccHHHHHHHH--HHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHH
Confidence 0001111 01122345666554211 011111222344556677766 554 46789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 304 ARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 304 AraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|+++.. |+.++.
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~-g~~~el 226 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASEL 226 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 99999999999999999999999999999988765 57999999999999999999999999999975 665554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-43 Score=346.35 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=158.9
Q ss_pred EEEEeEEEEeC--CceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 147 IKVENFSISAK--GNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 147 I~l~nls~~y~--~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
|+++||||+|+ +..+|+||||+|++|+++|||||||||||||+++|+|. ..|.+|+|.++++++...+...++..+
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--CCCCCCEEEECCEEecccchhhhhceE
Confidence 78999999994 45799999999999999999999999999999999984 578899999999988655544333222
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 294 (548)
.. +++. ...|..++.+++.. ........++..++...++.. ......+..||
T Consensus 80 ~~-------v~Q~----~~lf~~Ti~eNi~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LS 141 (241)
T d2pmka1 80 GV-------VLQD----NVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 141 (241)
T ss_dssp EE-------ECSS----CCCTTSBHHHHHCT-------TSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCC
T ss_pred EE-------Eecc----cccCCccccccccc-------cCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccC
Confidence 21 1111 12344455554421 111122333333333333221 12345568999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|+++ |
T Consensus 142 GGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~-G 219 (241)
T d2pmka1 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ-G 219 (241)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE-E
T ss_pred HHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE-C
Confidence 99999999999999999999999999999999999999998875 579999999999885 6999999999999976 7
Q ss_pred CHHHHH
Q psy11936 373 NYSMFK 378 (548)
Q Consensus 373 ~y~~f~ 378 (548)
++++..
T Consensus 220 ~~~ell 225 (241)
T d2pmka1 220 KHKELL 225 (241)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 777654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-44 Score=354.97 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=158.4
Q ss_pred cEEEEeEEEEeCCc---eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHH
Q psy11936 146 DIKVENFSISAKGN---DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVES 222 (548)
Q Consensus 146 ~I~l~nls~~y~~~---~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~ 222 (548)
.|+++||||+|+++ .+|+||||+|++|+++|||||||||||||+++|+|. ..|.+|.|.++++++...+...++.
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl--~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--YQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--cCCCcCEEEECCEecchhhhHHHHH
Confidence 49999999999753 499999999999999999999999999999999984 5788999999999886554433322
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHH---------HHHHHHHhC--CCChhhhhcccC
Q psy11936 223 VLKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEP---------RARRILAGL--GFSRAMQDRATK 291 (548)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---------~~~~~L~~l--gl~~~~~~~~~~ 291 (548)
.+.. +++. ...+..++.+++.. ......... .+...+..+ |+. ...++.+.
T Consensus 89 ~i~~-------v~Q~----~~lf~~tv~eni~~------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~ 150 (251)
T d1jj7a_ 89 QVAA-------VGQE----PQVFGRSLQENIAY------GLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGS 150 (251)
T ss_dssp HEEE-------ECSS----CCCCSSBHHHHHHC------SCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCS
T ss_pred Hhhh-------cccc----ccccCcchhhhhhh------hhcccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCc
Confidence 2111 1111 11233444444321 001111111 112334444 333 23456778
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy11936 292 NFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKL 367 (548)
Q Consensus 292 ~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i 367 (548)
+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~i 229 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAI 229 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEE
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998654 579999999999885 5999999999999
Q ss_pred EEEcCCHHHHHH
Q psy11936 368 YYYKGNYSMFKK 379 (548)
Q Consensus 368 ~~~~g~y~~f~~ 379 (548)
++. |++++..+
T Consensus 230 v~~-Gt~~eLl~ 240 (251)
T d1jj7a_ 230 REG-GTHQQLME 240 (251)
T ss_dssp EEE-ECHHHHHH
T ss_pred EEE-CCHHHHHh
Confidence 975 78777543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.9e-43 Score=348.40 Aligned_cols=213 Identities=22% Similarity=0.290 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCc--eeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKGN--DLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~~--~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|+++ ++|+||||+|++|+++|||||||||||||+++|+|. ..|.+|+|.++++++...+...++..
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--YDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--TCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--cCCCccEEEECCcccchhhhhhhhhe
Confidence 49999999999653 599999999999999999999999999999999984 57889999999998765443332221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh----------hhhhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR----------AMQDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~L 293 (548)
+.. +++ ....+..+..+++. + .........++.++++..++.+ ......+.+|
T Consensus 91 i~~-------v~Q----~~~l~~~ti~~n~~-----~-~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~L 153 (253)
T d3b60a1 91 VAL-------VSQ----NVHLFNDTVANNIA-----Y-ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 153 (253)
T ss_dssp EEE-------ECS----SCCCCSSBHHHHHH-----T-TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred EEE-------Eee----ccccCCcchhhhhh-----h-cCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCc
Confidence 111 111 01122333333321 0 0111223444555555544432 1233456789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|..+ +.|||+||||++.+. .||+|++|++|+|+++
T Consensus 154 SGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~- 231 (253)
T d3b60a1 154 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER- 231 (253)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999998875 689999999999885 6999999999999976
Q ss_pred CCHHHHHH
Q psy11936 372 GNYSMFKK 379 (548)
Q Consensus 372 g~y~~f~~ 379 (548)
|++++..+
T Consensus 232 G~~~eLl~ 239 (253)
T d3b60a1 232 GTHSELLA 239 (253)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 77776543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6e-44 Score=350.49 Aligned_cols=209 Identities=25% Similarity=0.292 Sum_probs=165.4
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|++ ++.++||+..+ ||||++. |+++||+|||||||||||++|+|. ..|.+|+|.+.|+++...... +
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl--~~p~~G~I~~~G~~i~~~~~~--~---- 69 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGI--VKPDRGEVRLNGADITPLPPE--R---- 69 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTS--SCCSEEEEEETTEECTTSCTT--T----
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcC--CCCCceEEEECCEECCcCCHH--H----
Confidence 4778 68999998765 8999995 789999999999999999999985 578999999999988543221 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
+..++++|. ...+...++.+++.. .+........++++.++|+.+|+. ...++++.+|||||||||+|||
T Consensus 70 ---r~ig~v~Q~---~~l~~~ltV~enl~~---~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAr 139 (240)
T d2onka1 70 ---RGIGFVPQD---YALFPHLSVYRNIAY---GLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALAR 139 (240)
T ss_dssp ---SCCBCCCSS---CCCCTTSCHHHHHHT---TCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHH
T ss_pred ---cCceeeccc---hhhcccchhhHhhhh---hhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHH
Confidence 112222221 122334567766532 112222223457899999999997 4789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHHH
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSMF 377 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~f 377 (548)
||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+||||++|++|+++++ |+.++.
T Consensus 140 al~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~-G~~~el 214 (240)
T d2onka1 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLKEL 214 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE-ecHHHH
Confidence 999999999999999999999999888888654 68999999999999999999999999999986 554443
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.2e-44 Score=351.46 Aligned_cols=213 Identities=18% Similarity=0.251 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCC-ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 146 DIKVENFSISAKG-NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 146 ~I~l~nls~~y~~-~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
+|+++||||+|++ +.+|+||||+|++|+++||+||||||||||+++|+|. ..|.+|+|.++++++...+...++..
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~~r~~- 77 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENWRSQ- 77 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEETTEESTTTSCSCCTTT-
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh--hCCCCCEEEECCEEeccccHHHHHhh-
Confidence 4899999999954 6799999999999999999999999999999999984 57889999999998754332221111
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCCh------hh----hhcccCCCC
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSR------AM----QDRATKNFS 294 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~------~~----~~~~~~~LS 294 (548)
.++++|. ...+..++.+++.. ..........+...++..++.. .. ....+.+||
T Consensus 78 ------i~~v~Q~----~~lf~~ti~eNi~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LS 141 (242)
T d1mv5a_ 78 ------IGFVSQD----SAIMAGTIRENLTY------GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS 141 (242)
T ss_dssp ------CCEECCS----SCCCCEEHHHHTTS------CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred ------eEEEccc----cccCCcchhhheec------ccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCC
Confidence 1111111 11233444443210 0111122333334444333221 11 123345799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcC
Q psy11936 295 GGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKG 372 (548)
Q Consensus 295 GGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g 372 (548)
|||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|++ .|
T Consensus 142 GGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~-~G 219 (242)
T d1mv5a_ 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SG 219 (242)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CS
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-EC
Confidence 99999999999999999999999999999999988888888765 689999999999886 599999999999996 58
Q ss_pred CHHHHHH
Q psy11936 373 NYSMFKK 379 (548)
Q Consensus 373 ~y~~f~~ 379 (548)
++++..+
T Consensus 220 ~~~eLl~ 226 (242)
T d1mv5a_ 220 KHNELVA 226 (242)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 8776543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-42 Score=342.70 Aligned_cols=211 Identities=21% Similarity=0.281 Sum_probs=164.2
Q ss_pred cEEEEeEEEEeCC--ceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHH
Q psy11936 146 DIKVENFSISAKG--NDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESV 223 (548)
Q Consensus 146 ~I~l~nls~~y~~--~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~ 223 (548)
.|+++||+|+|++ .++|+||||+|++|+++||+|+||||||||+++|+|. ..|.+|.|.+++.++...+...++..
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--YDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--SCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc--CCccccccccCCEEcccCCHHHhhhe
Confidence 4999999999965 4699999999999999999999999999999999984 57889999999998865544333221
Q ss_pred HHhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhh----------hhcccCCC
Q psy11936 224 LKADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAM----------QDRATKNF 293 (548)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 293 (548)
+. ++++ ....+..++.+++.. ........++.++++..++.+.. ......+|
T Consensus 94 i~-------~v~Q----~~~lf~~Ti~eNi~~-------g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~L 155 (255)
T d2hyda1 94 IG-------LVQQ----DNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155 (255)
T ss_dssp EE-------EECS----SCCCCSSBHHHHHGG-------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ee-------eeec----cccCCCCCHHHHHhc-------cCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCc
Confidence 11 1111 122345566655421 11223455666677777664321 22345679
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEc
Q psy11936 294 SGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYK 371 (548)
Q Consensus 294 SGGqkqRvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~ 371 (548)
||||||||+|||||+.+|+|||||||||+||+.+...+.+.|..+ +.|||+||||++.+. .||+|++|++|+|+..
T Consensus 156 SgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~- 233 (255)
T d2hyda1 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVET- 233 (255)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEE-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE-
Confidence 999999999999999999999999999999999999999999765 579999999999885 6999999999999976
Q ss_pred CCHHHHH
Q psy11936 372 GNYSMFK 378 (548)
Q Consensus 372 g~y~~f~ 378 (548)
|++++..
T Consensus 234 G~~~eLl 240 (255)
T d2hyda1 234 GTHRELI 240 (255)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 7777654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=332.57 Aligned_cols=207 Identities=25% Similarity=0.284 Sum_probs=159.3
Q ss_pred ccEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHH
Q psy11936 145 VDIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVL 224 (548)
Q Consensus 145 ~~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~ 224 (548)
.+|+++||+++| .|++|||+|.+||++||+|||||||||||++|+|. .|++|+|.+.++++.......+....
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl---~~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS---CCCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC---CCCceEEEECCEECCcCCHHHHHhhc
Confidence 468999998654 69999999999999999999999999999999984 46889999999887554332211100
Q ss_pred HhhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHH
Q psy11936 225 KADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLA 304 (548)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLA 304 (548)
. ++.+ .....+..+..+.+. + ........+.+.+++..+++.+ ..++++.+|||||||||+||
T Consensus 75 ~-------~~~~---~~~~~~~~~v~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 75 A-------YLSQ---QQTPPFATPVWHYLT-----L-HQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp E-------EECS---CCCCCSSCBHHHHHH-----H-HCSCTTCHHHHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHH
T ss_pred e-------eeec---cccCCccccHHHHhh-----h-ccchhhHHHHHHHHHHhcCCHh-HhCcChhhcCHHHHHHHHHH
Confidence 0 0000 001112223322221 1 1223344667889999999985 57899999999999999999
Q ss_pred HHHcc-------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCH
Q psy11936 305 RALYI-------EPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNY 374 (548)
Q Consensus 305 raL~~-------~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y 374 (548)
|||++ +|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||||++|++|++++. |+.
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~-G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCC-SBH
T ss_pred HHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE-CCH
Confidence 99997 77999999999999999998888887754 67999999999999999999999999999875 555
Q ss_pred HH
Q psy11936 375 SM 376 (548)
Q Consensus 375 ~~ 376 (548)
++
T Consensus 217 ~e 218 (231)
T d1l7vc_ 217 EE 218 (231)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.9e-38 Score=315.59 Aligned_cols=182 Identities=27% Similarity=0.366 Sum_probs=132.1
Q ss_pred eCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece------eeccCchhHHHHHHHhhHH
Q psy11936 156 AKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ------EVVADDLTAVESVLKADVK 229 (548)
Q Consensus 156 y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q------~i~~~~~~~~~~~~~~~~~ 229 (548)
|+++++|+||||+|++|+++||+|||||||||||++|+|. ..|.+|.|.+.++ .....+.
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl--~~p~~G~I~~~g~i~~v~Q~~~l~~~------------ 111 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSGRVSFCSQFSWIMPG------------ 111 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--SCCSEEEEECCSCEEEECSSCCCCSE------------
T ss_pred CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--CcCCCcEEEECCEEEEEeccccccCc------------
Confidence 4778999999999999999999999999999999999985 4677787766553 2211111
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhC-------CCC---hhhhhcccCCCCHHHHH
Q psy11936 230 RTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGL-------GFS---RAMQDRATKNFSGGWRM 299 (548)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~l-------gl~---~~~~~~~~~~LSGGqkq 299 (548)
++.+++. ++......+...++... .+. .......+.+|||||||
T Consensus 112 ------------------tv~eni~--------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQ 165 (281)
T d1r0wa_ 112 ------------------TIKENII--------FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165 (281)
T ss_dssp ------------------EHHHHHT--------TTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHH
T ss_pred ------------------eeecccc--------ccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHH
Confidence 1111110 00001111111222211 121 11234456689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hhhc--CCeEEEEecCHHHHHhhcCEEEEEeCCEEEEEcCCHHH
Q psy11936 300 RVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNY-LQGW--KKTLLIVSHDQSFLDNVCNEIIHLDQQKLYYYKGNYSM 376 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~-L~~~--~~TvIiVSHD~~~l~~vadrIi~L~~G~i~~~~g~y~~ 376 (548)
||+|||||+.+|+||||||||++||+.+...+.+. +..+ +.|+|+|||+++.+ +.||||++|++|+|+++ |++++
T Consensus 166 Rv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~-Gt~~e 243 (281)
T d1r0wa_ 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFY-GTFSE 243 (281)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEE-ECHHH
T ss_pred HHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999888765 3333 57999999999987 57999999999999876 88887
Q ss_pred HHH
Q psy11936 377 FKK 379 (548)
Q Consensus 377 f~~ 379 (548)
...
T Consensus 244 L~~ 246 (281)
T d1r0wa_ 244 LQS 246 (281)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.6e-38 Score=303.93 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=141.2
Q ss_pred cEEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEeceeeccCchhHHHHHHH
Q psy11936 146 DIKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQEVVADDLTAVESVLK 225 (548)
Q Consensus 146 ~I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~i~~~~~~~~~~~~~ 225 (548)
.|+++|||++|+ +++|+||||+|++|+++||+|||||||||||++|+|. ..|.+|+|.++++++.....
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl--~~p~~G~I~~~g~~i~~~~~-------- 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPITKVKG-------- 70 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEETTEEGGGGGG--------
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--cccCCCEEEECCEehhHhcC--------
Confidence 389999999995 5799999999999999999999999999999999984 57899999999987642110
Q ss_pred hhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhcCCCChHHHHHHHHHhCCCChhhhhcccCCCCHHHHHHHHHHH
Q psy11936 226 ADVKRTELLAECAKLEAADFSSEQQEQLKEIYEELKAIGADSAEPRARRILAGLGFSRAMQDRATKNFSGGWRMRVSLAR 305 (548)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqkqRvaLAr 305 (548)
...+.++. .......+..+++.... ...+.......+.+.++.+++.+ .++++.+|||||||||+|||
T Consensus 71 ----~i~~~~~~---~~~~~~~t~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~ 138 (200)
T d1sgwa_ 71 ----KIFFLPEE---IIVPRKISVEDYLKAVA---SLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLAS 138 (200)
T ss_dssp ----GEEEECSS---CCCCTTSBHHHHHHHHH---HHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHH
T ss_pred ----cEEEEeec---ccCCCCcCHHHHHHHHH---HhcCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHH
Confidence 00000000 00111223333332211 12233445667788899988753 45778999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCeEEEEecCHHHHHhhcCEEEEEeC
Q psy11936 306 ALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQSFLDNVCNEIIHLDQ 364 (548)
Q Consensus 306 aL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~----~~TvIiVSHD~~~l~~vadrIi~L~~ 364 (548)
||+.+|+||||||||++||+.++..+.+.|.++ +.+||+++||+ .+||++.+|+.
T Consensus 139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 999999999999999999999988888777654 23445555554 47999988753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.61 E-value=9e-19 Score=160.89 Aligned_cols=85 Identities=9% Similarity=-0.022 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHhhcCCeEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy11936 291 KNFSGGWRMRVSLARALYIEPTLLLLDEPTNH--LDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDNVCNEIIHLDQQKLY 368 (548)
Q Consensus 291 ~~LSGGqkqRvaLAraL~~~P~lLLLDEPTn~--LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~vadrIi~L~~G~i~ 368 (548)
..+|+|+++|.++++++..+|++|++|||+.. .+......|.+++...+.|+|+++|+... ..+|++++.+.+|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEE
Confidence 45899999999999999999999999997644 45677888888888888999999999865 4679999999999997
Q ss_pred EEc-CCHHH
Q psy11936 369 YYK-GNYSM 376 (548)
Q Consensus 369 ~~~-g~y~~ 376 (548)
... .|++.
T Consensus 159 ~v~~~nrd~ 167 (178)
T d1ye8a1 159 ELTPENRDV 167 (178)
T ss_dssp ECCTTTTTT
T ss_pred EECCccHHH
Confidence 643 34443
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=1.8e-10 Score=113.77 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=63.9
Q ss_pred cccCCCCHHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 288 RATKNFSGGWRMRVSLARA----LYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 288 ~~~~~LSGGqkqRvaLAra----L~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~--~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
.....+|+|+++.+.++.. ....+.++++|||-+||+|..+..|.++|+.. +.-|||+||...+++ .+|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 3467899999999877665 45677999999999999999999999999765 358999999999996 5798865
Q ss_pred --EeCC
Q psy11936 362 --LDQQ 365 (548)
Q Consensus 362 --L~~G 365 (548)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=2.7e-09 Score=109.07 Aligned_cols=73 Identities=19% Similarity=0.408 Sum_probs=61.2
Q ss_pred ccCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCeEEEEecCHHHHHhhcCEEEE
Q psy11936 289 ATKNFSGGWRMRVSLARAL----YIEPTLLLLDEPTNHLDLNAVIWLDNYLQGW---KKTLLIVSHDQSFLDNVCNEIIH 361 (548)
Q Consensus 289 ~~~~LSGGqkqRvaLAraL----~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~---~~TvIiVSHD~~~l~~vadrIi~ 361 (548)
++..|||||+.+++||..| +.+++++|||||++|||+..+..+.++|... +.-+|+|||+..++. .||+++.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence 4577899999998877654 5678899999999999999999999999764 235999999999886 5899876
Q ss_pred E
Q psy11936 362 L 362 (548)
Q Consensus 362 L 362 (548)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.74 E-value=1.3e-09 Score=105.56 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=62.8
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce----------eeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV----------TFAY 529 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~----------~~~y 529 (548)
+|+++||+|+|++.+++|+||||.. .|+.+.|.||| |||+|+|+|.+.|++|+|+.. +++ .|+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999987778999999986 99999999995 999999999999999987552 222 3899
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
+.|+|.+.+
T Consensus 81 v~Q~~~lf~ 89 (242)
T d1mv5a_ 81 VSQDSAIMA 89 (242)
T ss_dssp ECCSSCCCC
T ss_pred EccccccCC
Confidence 999998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=4e-09 Score=101.97 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=61.9
Q ss_pred EEEEeeEEEeCC-CCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 467 LGLHNVTFAYEG-MKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 467 L~l~~vs~~Y~~-~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
|+++||+|+|++ .+++|+||||.. .|+++.|.||+ |||+|+|+|.++|++|+|+. ++|+ .|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 689999999964 467999999996 99999999994 99999999999999998764 4444 4999
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
+.|+|.+.+
T Consensus 82 v~Q~~~lf~ 90 (241)
T d2pmka1 82 VLQDNVLLN 90 (241)
T ss_dssp ECSSCCCTT
T ss_pred EecccccCC
Confidence 999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.55 E-value=1.4e-08 Score=98.81 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=62.9
Q ss_pred cEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCee-eccce----------eee
Q psy11936 466 ILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPIL-GLHNV----------TFA 528 (548)
Q Consensus 466 vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~-~~~n~----------~~~ 528 (548)
-|+++||+|+|++. +++|+||||.. .|+.++|.||+ |||+|+|+|.++|++|.|. .++++ .|+
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 49999999999754 57999999986 99999999994 9999999999999999865 44444 489
Q ss_pred eeeccceeee
Q psy11936 529 YEGMKPLLVD 538 (548)
Q Consensus 529 y~~~~~~~~~ 538 (548)
|+.|+|.+.+
T Consensus 96 ~v~Q~~~lf~ 105 (255)
T d2hyda1 96 LVQQDNILFS 105 (255)
T ss_dssp EECSSCCCCS
T ss_pred eeeccccCCC
Confidence 9999998864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.7e-08 Score=96.56 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=61.9
Q ss_pred cEEEEeeEEEeCCC--CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce----------ee
Q psy11936 466 ILGLHNVTFAYEGM--KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV----------TF 527 (548)
Q Consensus 466 vL~l~~vs~~Y~~~--~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~----------~~ 527 (548)
.|+++||+|+|++. .++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|.|+.. +++ +|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 59999999999753 46999999986 89999999995 999999999999999987543 332 48
Q ss_pred eeeeccceeee
Q psy11936 528 AYEGMKPLLVD 538 (548)
Q Consensus 528 ~y~~~~~~~~~ 538 (548)
+|+.|+|.+.+
T Consensus 91 ~~v~Q~~~lf~ 101 (251)
T d1jj7a_ 91 AAVGQEPQVFG 101 (251)
T ss_dssp EEECSSCCCCS
T ss_pred hhccccccccC
Confidence 99999998764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=3.1e-08 Score=95.37 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=62.2
Q ss_pred cEEEEeeEEEeCCCC---cccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 466 ILGLHNVTFAYEGMK---PLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~---~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+|+++||+++|+++. .+++||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++||
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 589999999997542 4799999986 89999999995 89999999999999998654 6776
Q ss_pred --eeeeeeccceeee
Q psy11936 526 --TFAYEGMKPLLVD 538 (548)
Q Consensus 526 --~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|-|.+
T Consensus 81 rr~ig~VfQ~~~l~~ 95 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLS 95 (240)
T ss_dssp HHHEEECCSSCCCCT
T ss_pred hccccccccccccCC
Confidence 4999999997654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.41 E-value=1.4e-06 Score=82.71 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHH----HHHHHHHHhhcCCeEEEEecCHHHHH
Q psy11936 299 MRVSLARALYIEPTLLLLDEPTNHLDLNA----VIWLDNYLQGWKKTLLIVSHDQSFLD 353 (548)
Q Consensus 299 qRvaLAraL~~~P~lLLLDEPTn~LD~~s----~~~L~~~L~~~~~TvIiVSHD~~~l~ 353 (548)
+|+.-..-.+.+..|+|+||+..|=++.. ...+.+.|.+.+..++++||..+...
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 33333333445667999999999999854 33455666666889999999987754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=3.8e-08 Score=94.70 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=57.4
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-cccee--------eeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNVT--------FAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~~--------~~y~~ 531 (548)
-|+++||+++|++ ..+++||||.. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++. |+|+.
T Consensus 6 ~I~v~nlsk~yg~-~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECC-EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 3899999999965 78999999986 99999999996 99999999999999997653 44443 99999
Q ss_pred ccceeee
Q psy11936 532 MKPLLVD 538 (548)
Q Consensus 532 ~~~~~~~ 538 (548)
|+|-|.+
T Consensus 85 Q~~~l~~ 91 (239)
T d1v43a3 85 QSYAVWP 91 (239)
T ss_dssp C------
T ss_pred echhhcc
Confidence 9998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.36 E-value=4.9e-08 Score=94.08 Aligned_cols=74 Identities=7% Similarity=-0.041 Sum_probs=62.6
Q ss_pred CCCcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------
Q psy11936 463 QPPILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------- 525 (548)
Q Consensus 463 ~~~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------- 525 (548)
+..+|+++||+++|++ ..+++||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. ++++
T Consensus 3 sd~~Lev~~l~k~yg~-~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp CSEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred cceEEEEeeEEEEECC-EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 3579999999999965 67999999996 99999999997 89999999999999998654 3333
Q ss_pred eeeeeeccceee
Q psy11936 526 TFAYEGMKPLLV 537 (548)
Q Consensus 526 ~~~y~~~~~~~~ 537 (548)
-++|..|.+-+.
T Consensus 82 gi~~~~q~~~l~ 93 (240)
T d1ji0a_ 82 GIALVPEGRRIF 93 (240)
T ss_dssp TEEEECSSCCCC
T ss_pred cccccCcccccC
Confidence 288999987654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.36 E-value=4.6e-08 Score=93.62 Aligned_cols=73 Identities=15% Similarity=0.035 Sum_probs=61.4
Q ss_pred cEEEEeeEEEeCCCC---cccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce-----------
Q psy11936 466 ILGLHNVTFAYEGMK---PLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV----------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~---~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~----------- 525 (548)
+|+++||+++|+.+. .+++||||+. .|+.+.|.||| |||+++|.|.++|++|+|+.. +++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 589999999997432 3799999996 89999999995 999999999999999987654 544
Q ss_pred ---eeeeeeccceeee
Q psy11936 526 ---TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ---~~~y~~~~~~~~~ 538 (548)
.|+|+.|+|-|..
T Consensus 81 r~~~ig~v~Q~~~l~~ 96 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIP 96 (230)
T ss_dssp HHHHEEEECTTCCCCT
T ss_pred hcceEEEEecchhhCc
Confidence 3999999997653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.35 E-value=6.2e-08 Score=90.79 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=58.4
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----eeeeeeccc
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----TFAYEGMKP 534 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----~~~y~~~~~ 534 (548)
.|+++||+++|+ +++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. ++++ +++|+.|++
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence 589999999994 57999999986 99999999996 89999999999999998755 3333 578888877
Q ss_pred ee
Q psy11936 535 LL 536 (548)
Q Consensus 535 ~~ 536 (548)
.+
T Consensus 80 ~~ 81 (200)
T d1sgwa_ 80 IV 81 (200)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.34 E-value=5.9e-08 Score=94.50 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=62.0
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCee-eccce--------------
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPIL-GLHNV-------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~-~~~n~-------------- 525 (548)
.|+++||+++|++ ..+++||||+. .|+.+.|.||| |||+|+|+|.++|++|.|+ .+.||
T Consensus 2 ~Lev~nl~k~yg~-~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEECC-EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 5899999999965 68999999985 99999999995 8999999999999999865 34554
Q ss_pred ---------eeeeeeccceeee
Q psy11936 526 ---------TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ---------~~~y~~~~~~~~~ 538 (548)
+|+|+-|+|-+.+
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~ 102 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWS 102 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCT
T ss_pred HhHHHHHhcceEEEEechhhcc
Confidence 4899999997654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.34 E-value=5.6e-08 Score=94.41 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=61.6
Q ss_pred EEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce----------eeee
Q psy11936 467 LGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV----------TFAY 529 (548)
Q Consensus 467 L~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~----------~~~y 529 (548)
|+++||+|+|++. .++|+||||.. .|+.++|.||+ |||+++|+|.++|++|.|+. +.++ .|+|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 93 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEE
Confidence 9999999999754 57999999986 89999999995 99999999999999998764 3322 4999
Q ss_pred eeccceeee
Q psy11936 530 EGMKPLLVD 538 (548)
Q Consensus 530 ~~~~~~~~~ 538 (548)
+.|+|.+.+
T Consensus 94 v~Q~~~l~~ 102 (253)
T d3b60a1 94 VSQNVHLFN 102 (253)
T ss_dssp ECSSCCCCS
T ss_pred EeeccccCC
Confidence 999998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.32 E-value=6.3e-08 Score=93.25 Aligned_cols=73 Identities=12% Similarity=-0.090 Sum_probs=61.8
Q ss_pred cEEEEeeEEEeCCC-CcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-------------
Q psy11936 466 ILGLHNVTFAYEGM-KPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~-~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~------------- 525 (548)
.|+++||+++|+++ ..+++||||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999643 57899999996 89999999996 99999999999999998654 4444
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.|+|+-|+|-|..
T Consensus 83 ~ig~vfQ~~~L~p 95 (242)
T d1oxxk2 83 KIGMVFQTWALYP 95 (242)
T ss_dssp CEEEEETTSCCCT
T ss_pred cceEEeccccccc
Confidence 4999999997653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=8.5e-08 Score=91.81 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=59.6
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce--------eeeeeec
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV--------TFAYEGM 532 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~--------~~~y~~~ 532 (548)
|+++||+++|++ ..+++||||+. .|+.+.|.||| |||+|+|.|.++|++|+|+. ++++ .|+|+.|
T Consensus 1 Iev~nv~k~yg~-~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWGE-VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence 689999999965 78999999986 99999999996 89999999999999998743 3333 3899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
+|-|..
T Consensus 80 ~~~l~~ 85 (232)
T d2awna2 80 SYALYP 85 (232)
T ss_dssp SCCC--
T ss_pred cccccc
Confidence 997764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.28 E-value=9.2e-08 Score=92.88 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=61.3
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccce-----------ee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHNV-----------TF 527 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n~-----------~~ 527 (548)
.+|+++||+++|++ ..+++||||+. .|+.+.|.||| |||+|+|+|.++|++|+|+. +.++ .|
T Consensus 3 ~iL~v~nlsk~yg~-~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred ceEEEEEEEEEECC-eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 37999999999975 67999999985 99999999996 89999999999999998654 3333 38
Q ss_pred eeeeccceee
Q psy11936 528 AYEGMKPLLV 537 (548)
Q Consensus 528 ~y~~~~~~~~ 537 (548)
+|+.|.|-++
T Consensus 82 ~~v~Q~~~~~ 91 (254)
T d1g6ha_ 82 VRTFQTPQPL 91 (254)
T ss_dssp EECCCCCGGG
T ss_pred CccCCccccC
Confidence 9999999654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.24 E-value=1.4e-07 Score=90.69 Aligned_cols=72 Identities=14% Similarity=-0.019 Sum_probs=61.8
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeecc-ce--------------
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-NV-------------- 525 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n~-------------- 525 (548)
.|+++||+++|++ ..+++||||+. .|+.+.|.||| |||+|+|.|.++|++|+|+..- ++
T Consensus 3 ~i~v~nl~k~yg~-~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred cEEEEeEEEEECC-EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 5899999999965 67999999995 99999999996 8999999999999999876532 21
Q ss_pred eeeeeeccceeee
Q psy11936 526 TFAYEGMKPLLVD 538 (548)
Q Consensus 526 ~~~y~~~~~~~~~ 538 (548)
.|+|+-|+|-|.+
T Consensus 82 ~ig~v~Q~~~L~~ 94 (240)
T d1g2912 82 DIAMVFQSYALYP 94 (240)
T ss_dssp SEEEECSCCCCCT
T ss_pred cceecccchhhcc
Confidence 5999999997764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.19 E-value=1.7e-07 Score=89.42 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=60.8
Q ss_pred cEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeec-cce--------eeeeee
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGL-HNV--------TFAYEG 531 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~-~n~--------~~~y~~ 531 (548)
+|+++||+++|++ .+++||||+. .|+.+.|.||| |||+|+|.|.++|++|+|+.. +++ .|+|+-
T Consensus 1 mi~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 1 MIEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp CEEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence 5899999999964 4899999986 99999999996 999999999999999987653 333 499999
Q ss_pred ccceeee
Q psy11936 532 MKPLLVD 538 (548)
Q Consensus 532 ~~~~~~~ 538 (548)
|+|-|+.
T Consensus 79 Q~~~l~~ 85 (229)
T d3d31a2 79 QNYSLFP 85 (229)
T ss_dssp TTCCCCT
T ss_pred cccccCc
Confidence 9997763
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=8.2e-06 Score=77.79 Aligned_cols=46 Identities=20% Similarity=0.084 Sum_probs=30.8
Q ss_pred HccCCCEEEEeCCCCCCCHHHHH----HHHHHHh-hcCCeEEEEecCHHHH
Q psy11936 307 LYIEPTLLLLDEPTNHLDLNAVI----WLDNYLQ-GWKKTLLIVSHDQSFL 352 (548)
Q Consensus 307 L~~~P~lLLLDEPTn~LD~~s~~----~L~~~L~-~~~~TvIiVSHD~~~l 352 (548)
.+.+..|+|+||+..|=++.... .+.++|. ..+..+|++||..+..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 34556799999999999975432 2344443 3346788888876544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=4.6e-07 Score=87.02 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=60.4
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeee-ccc---------eeeeeee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILG-LHN---------VTFAYEG 531 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~-~~n---------~~~~y~~ 531 (548)
|.++||+++|++ +.+++|+||.. .|+.+.|.||| |||+|+|+|.++|++|.|.. ++| -.++|+.
T Consensus 3 I~v~nl~k~yg~-~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 3 VVVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEeEEEEECC-EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 789999999965 78999999985 99999999997 89999999999999998753 444 3688998
Q ss_pred ccceeee
Q psy11936 532 MKPLLVD 538 (548)
Q Consensus 532 ~~~~~~~ 538 (548)
|.+-+.+
T Consensus 82 q~~~~~~ 88 (238)
T d1vpla_ 82 EEAGAYR 88 (238)
T ss_dssp TTCCCCT
T ss_pred eccccCC
Confidence 8876544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=2.9e-07 Score=90.56 Aligned_cols=67 Identities=7% Similarity=0.056 Sum_probs=54.5
Q ss_pred EEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCeeeccceeeeeeeccceeee
Q psy11936 467 LGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLHNVTFAYEGMKPLLVD 538 (548)
Q Consensus 467 L~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~n~~~~y~~~~~~~~~ 538 (548)
|.+.++++ . ++++|+||||+. .|+.+.|.||| |||+|+|+|.++|++|.|+. |=+|+|+.|+|.+..
T Consensus 39 i~~~~~~~--~-g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~--~g~i~~v~Q~~~l~~ 110 (281)
T d1r0wa_ 39 VSFSHLCL--V-GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH--SGRVSFCSQFSWIMP 110 (281)
T ss_dssp -CHHHHHH--T-TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEC--CSCEEEECSSCCCCS
T ss_pred EEEEEcCC--C-CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEE--CCEEEEEeccccccC
Confidence 44444443 3 368999999986 99999999996 89999999999999998864 457999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=1.4e-06 Score=78.22 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.3
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
.+.+.+|.+.+| +++|+|+|||||||||.+|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 467888888776 99999999999999999996
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.0012 Score=62.43 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.3
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
-+|.++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999999987664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=6.5e-05 Score=65.75 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.23 E-value=3.4e-05 Score=73.55 Aligned_cols=69 Identities=9% Similarity=-0.069 Sum_probs=52.7
Q ss_pred cEEEEeeEEEeCCCCcccccCCccCCCceeEeecCc----cceeeccCCCCCCCCCCeeecc-c--------eeeeeeec
Q psy11936 466 ILGLHNVTFAYEGMKPLLMSKADEDQGPTELIQKPR----EYVVKFSFPDPPPLQPPILGLH-N--------VTFAYEGM 532 (548)
Q Consensus 466 vL~l~~vs~~Y~~~~~ll~~v~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~-n--------~~~~y~~~ 532 (548)
.|++ ++.+.|++ . -+ ||||+.++..+.|.||| |||+|+|+|.++|++|+|+... + =+|+|+.|
T Consensus 2 ~l~v-~~~k~~g~-~-~~-~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGN-F-RL-NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETT-E-EE-EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECC-E-EE-EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeecc
Confidence 3667 67888964 2 23 78888765677777886 9999999999999999876542 2 25899999
Q ss_pred cceeee
Q psy11936 533 KPLLVD 538 (548)
Q Consensus 533 ~~~~~~ 538 (548)
+|-|++
T Consensus 78 ~~~l~~ 83 (240)
T d2onka1 78 DYALFP 83 (240)
T ss_dssp SCCCCT
T ss_pred chhhcc
Confidence 987764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=9e-05 Score=66.75 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.++.|+||||||||||++.|..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999999975
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.07 E-value=0.00012 Score=64.31 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|.++.|+|++||||||+.+.|+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999853
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.92 E-value=0.00018 Score=63.11 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
..|+|+|+.|||||||.+.|+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.91 E-value=0.00023 Score=62.28 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+|.|+|++||||||+.+.|+-
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00021 Score=62.66 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+.|+||+|+|||||++.|+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999853
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00023 Score=71.31 Aligned_cols=41 Identities=27% Similarity=0.575 Sum_probs=29.5
Q ss_pred EEEEeEEEEeCCceeeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 147 IKVENFSISAKGNDLFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 147 I~l~nls~~y~~~~iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
|+++|+ ++|.+. .++.+..+.+.+|+|+|||||||+|.+|+
T Consensus 6 l~l~NF-ks~~~~-----~~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGV-----TKVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSE-----EEEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCC-----EEEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 666665 244432 23444556699999999999999999985
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00025 Score=62.03 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++.|+|++||||||+.+.|+.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.85 E-value=0.00027 Score=62.38 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+++|+|++|||||||+..|..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3789999999999999987764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.83 E-value=0.0035 Score=57.90 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|..+.|.|++|||||||+.-|+-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999887763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.80 E-value=0.0003 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.4
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++|-.++|+|++||||||+.+.|+-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00032 Score=60.12 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.|.|+||+||||||+.+.|+-
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.73 E-value=0.0031 Score=59.74 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.4
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
-|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344443347899999999999999999987776
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.00034 Score=62.43 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|||.|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999973
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00045 Score=63.86 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.|.++.|+||+|||||||++.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999998864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.68 E-value=0.00048 Score=60.02 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+|.|.|++||||||+.+.|+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999963
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.67 E-value=0.0027 Score=60.15 Aligned_cols=21 Identities=52% Similarity=0.711 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
+.|.||.|||||||.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999963
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.64 E-value=0.0005 Score=60.41 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+|+|.|+.||||||+++.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.00042 Score=65.12 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|..++++|+||+|||||++.|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCCHHHHHHhhcch
Confidence 4888999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.60 E-value=0.00046 Score=60.11 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.++|+|+.||||||+.+.|+-
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.59 E-value=0.00051 Score=58.93 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++.|+|++|||||||.+.|+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00021 Score=67.58 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=50.8
Q ss_pred CcEEEEeeEEEeCCCCcccccCCccC-CCceeEeecCc----cceeeccCCCCCCCCCCee-eccce----------eee
Q psy11936 465 PILGLHNVTFAYEGMKPLLMSKADED-QGPTELIQKPR----EYVVKFSFPDPPPLQPPIL-GLHNV----------TFA 528 (548)
Q Consensus 465 ~vL~l~~vs~~Y~~~~~ll~~v~~~~-~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~~-~~~n~----------~~~ 528 (548)
.+|+++||+++| .++||||+. .|+.+.|.||| |||+|+|.|.. |+.|+|. .+.++ ..+
T Consensus 2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 479999998765 699999986 99999999996 89999999976 5677653 33332 357
Q ss_pred eeeccce
Q psy11936 529 YEGMKPL 535 (548)
Q Consensus 529 y~~~~~~ 535 (548)
|+.|.+.
T Consensus 76 ~~~~~~~ 82 (231)
T d1l7vc_ 76 YLSQQQT 82 (231)
T ss_dssp EECSCCC
T ss_pred eeecccc
Confidence 8877653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.58 E-value=0.00053 Score=59.39 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.56 E-value=0.0061 Score=58.43 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=29.8
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEecee
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQE 211 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q~ 211 (548)
=|+.|.++-|.||+|||||||+-.++... ....+.+.|.+-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a--qk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHH--HhCCCEEEEEECC
Confidence 47799999999999999999998776421 1123445555443
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.00043 Score=61.74 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+|.|+|++||||||+.+.|+-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999974
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.47 E-value=0.0043 Score=58.59 Aligned_cols=21 Identities=43% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
-+.|.||.|||||+|.++|+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 478999999999999999996
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.47 E-value=0.00057 Score=61.64 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|+|+|+.|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00074 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|||++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.37 E-value=0.00057 Score=60.00 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.0008 Score=60.68 Aligned_cols=20 Identities=40% Similarity=0.765 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
|.|+||+|||||||++.|+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.28 E-value=0.00099 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|||..|||||||++.+++..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.00099 Score=60.91 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|||.|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.25 E-value=0.0011 Score=56.85 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
++.|+|+.|||||||++.|++..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.24 E-value=0.001 Score=61.35 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.0011 Score=60.14 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
|.|+||+|||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999863
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.0042 Score=59.27 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
...-+.|.||.|+|||+|.+.|++.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHHH
Confidence 3445889999999999999999974
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00049 Score=64.95 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|..++++|+||+|||||++.|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred ccceEEEECCCCccHHHHHHhhccH
Confidence 4788999999999999999999874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0012 Score=58.68 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|||+|..|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999974
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.18 E-value=0.00096 Score=59.05 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
-|+|||+.|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0013 Score=57.92 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|+|+|+.|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.00079 Score=60.05 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|||||+.++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0013 Score=56.97 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
|=+++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0014 Score=57.67 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.09 E-value=0.0015 Score=58.47 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=22.6
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++|-++.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3678899999999999999999983
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.08 E-value=0.0014 Score=57.65 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|+|+.||||||+.++|+.
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0016 Score=58.53 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
..+.|+||||+|||||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0016 Score=57.70 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.029 Score=53.36 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
=|..|.++-|.||+|||||||+-.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 477999999999999999999876663
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.02 E-value=0.0014 Score=58.77 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-+|.|+||.||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0024 Score=56.64 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.8
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.+|+++.|.||+|||||||+-.++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999887764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0017 Score=58.51 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|+|||+.|||||||++.|+|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.95 E-value=0.0017 Score=57.26 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
-+.|+|++||||||+.+.|+-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.95 E-value=0.0012 Score=58.69 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
|||+|..|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.92 E-value=0.0017 Score=57.01 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|.|++||||||+.+.|+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.91 E-value=0.0019 Score=56.95 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.002 Score=58.03 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
-.++.|+||.||||||+.+.|+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.87 E-value=0.0015 Score=58.50 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.002 Score=56.47 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+|+.||||||+.++|+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.82 E-value=0.002 Score=56.02 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0019 Score=57.81 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++||.|+.||||||+.+.|.-.
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7899999999999999999743
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0011 Score=58.41 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|+|+|+.++|||||++.|+|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0026 Score=56.95 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.68 E-value=0.0025 Score=55.74 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999975
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.66 E-value=0.0028 Score=56.92 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.++|..|||||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999984
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.60 E-value=0.003 Score=56.11 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.58 E-value=0.049 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+++|+|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.56 E-value=0.0032 Score=56.58 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..+.++.|+||.||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999985
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.55 E-value=0.0038 Score=56.94 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++||+|..||||||+++++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.54 E-value=0.0024 Score=59.77 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
..+.|.||.|||||||.+.|++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.54 E-value=0.0022 Score=57.53 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=+|+|-|+.|||||||++.|+..
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.001 Score=57.51 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.50 E-value=0.0034 Score=54.72 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|+.|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999888643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0035 Score=56.75 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|+|.||.||||||+.+.|+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0034 Score=55.54 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.44 E-value=0.0035 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
..-..+.++|+.||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.43 E-value=0.0038 Score=55.28 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.41 E-value=0.0037 Score=56.94 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+++|-||.||||||+.+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578889999999999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.34 E-value=0.0036 Score=59.39 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
.++|+|..|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0042 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4889999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0052 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++||+|..||||||..++|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999999854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.005 Score=54.62 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+||-||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0051 Score=55.92 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|.+|+|-|+-||||||+++.|+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.18 E-value=0.0051 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.=++.|+||.||||||+.+.|+-
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999984
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.14 E-value=0.0048 Score=56.79 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHH-HhhcCEE
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFL-DNVCNEI 359 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l-~~vadrI 359 (548)
.+.++|+||- ..+-......|..++.... ..+|++++....+ ..+.+|.
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~ 160 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcc
Confidence 5679999994 3444556667777776553 4667777766544 2334443
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0046 Score=55.89 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
-|+|+|+.||||||||+.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.12 E-value=0.0053 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+++.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0045 Score=60.58 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|||.|++|||||||.+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 789999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0051 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0034 Score=57.75 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.+|+|-|+-||||||+++.|+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999853
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.0057 Score=56.76 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHhhcCCeEEEEecCH
Q psy11936 310 EPTLLLLDEPTNHL--DLNAVIWLDNYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 310 ~P~lLLLDEPTn~L--D~~s~~~L~~~L~~~~~TvIiVSHD~ 349 (548)
.+.++++||.-... +......+.++.......+++++.+.
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~ 164 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 164 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT
T ss_pred cceEEEeeeccccccchhhhhHHHhhhhcccccccccccccc
Confidence 56789999976443 33445566666666666777777653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.006 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.96 E-value=0.005 Score=53.92 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||+.|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.95 E-value=0.0055 Score=54.41 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
+||||.-.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999963
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.0058 Score=56.02 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|.||+|+|||||+++|+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0064 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+|+|-|+-||||||+.+.|+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999998864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0058 Score=60.27 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-++||+|+.|||||||+..|+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 55899999999999999999874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.0069 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999877753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.83 E-value=0.043 Score=55.17 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCH
Q psy11936 301 VSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 349 (548)
Q Consensus 301 vaLAraL~~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~ 349 (548)
-+|..+|=++||+|++.|-. |.++.....+.-. .+..|+.+-|-.
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~-tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQASL-TGHLVMSTLHTN 262 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEECCS
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHh-cCCeEEEEeccC
Confidence 35777888999999999987 6666665554432 245566665643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.008 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++++|.+|+|||||++.+++.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.79 E-value=0.0068 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.9
Q ss_pred ECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 170 ANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 170 ~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
.+|-++-|.|.+|||||||.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999999986
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.008 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.008 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+++.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.74 E-value=0.0076 Score=55.73 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+..+.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 356789999999999999998874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0071 Score=52.60 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.0082 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
+|-+|+|-|+-||||||+.++|+-
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999999985
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.008 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||+.|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999988764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.66 E-value=0.0085 Score=55.18 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=19.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.+.+++++||+|+||||.+==|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999997655553
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.65 E-value=0.0083 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|||||||++.+++..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999887643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0077 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.0091 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.7
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
=|.+|.++.|.|+.|||||||+--++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 38899999999999999999998775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0095 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 5889999999999999999874
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.56 E-value=0.0082 Score=55.30 Aligned_cols=20 Identities=60% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|.||.|+|||||.++|+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999999985
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0092 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+++.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0083 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+++.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998864
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.53 E-value=0.0094 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.47 E-value=0.0096 Score=58.48 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=26.8
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEE
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILY 207 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~ 207 (548)
+..|.-+.|+|+.||||||||+.|++. .|+..+|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~---i~~~~rivt 198 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEF---IPKEERIIS 198 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGG---SCTTCCEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhh---cccccceee
Confidence 344556899999999999999999974 344444443
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.0091 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.012 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68899999999999999888643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.011 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999888764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.009 Score=60.39 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
|+|+|..|+|||||++.|.|.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.34 E-value=0.011 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|+|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.012 Score=51.64 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.|+|..|+|||||++.+++.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.011 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.27 E-value=0.0065 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.|.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.25 E-value=0.012 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.24 E-value=0.014 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.7
Q ss_pred EECCcEEEEECCCCCcHHHHHHHH
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHI 192 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklL 192 (548)
|.+|+++.|.|++|+|||||+--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.21 E-value=0.0055 Score=59.36 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=16.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|||.|++||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.21 E-value=0.011 Score=54.59 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++||+|..+||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 699999999999999999986
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.012 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.19 E-value=0.011 Score=54.60 Aligned_cols=21 Identities=52% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
+.|.||.|+|||||.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999963
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.012 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999877653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.11 E-value=0.011 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=19.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
..++.++||||+||||.+-=|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998766663
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.04 E-value=0.015 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=23.3
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
|.+|+++.|.|+.|+|||||+--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999988776
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.03 E-value=0.012 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.-+.|+||.|||||+|.|+|+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345679999999999999999963
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.02 E-value=0.014 Score=53.95 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHHccCCCEEEEeCCC-CCCCHHHHHHHHHHHh
Q psy11936 300 RVSLARALYIEPTLLLLDEPT-NHLDLNAVIWLDNYLQ 336 (548)
Q Consensus 300 RvaLAraL~~~P~lLLLDEPT-n~LD~~s~~~L~~~L~ 336 (548)
+...+.+...+-+++|.|=|= ++.|......+..+..
T Consensus 83 ~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~ 120 (213)
T d1vmaa2 83 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHR 120 (213)
T ss_dssp HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHh
Confidence 344556667889999999763 5566666666555544
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.014 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999987764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.013 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.013 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3899999999999999988764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.013 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999987754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.0095 Score=57.60 Aligned_cols=31 Identities=39% Similarity=0.495 Sum_probs=27.2
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
|.=+.|-.|++.+|+|+.|+|||||+..|+.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 3346888999999999999999999998874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.015 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|||..|+|||||++-+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999888643
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.014 Score=53.39 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFL 352 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l 352 (548)
...++|+||.- ++.......|...+.... ..+++++++...+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 35799999954 555566666766666643 4677888877654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.88 E-value=0.016 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
+.+|.++.|.|+.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999977554
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.82 E-value=0.0097 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.|+|++|+|||||++.+++.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999853
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.016 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988854
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.016 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=18.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.++++|||+|+||||.+-=|+-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999997655553
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.017 Score=54.78 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
...-+.|.||.|||||+|.+.|+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHH
Confidence 334578999999999999999996
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.016 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|||..|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999888764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.014 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=23.6
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
=|.+|.++.|.|++|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 37799999999999999999988776
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.74 E-value=0.016 Score=56.93 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.-++||.|+-|||||||+..|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.013 Score=54.04 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=31.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHH
Q psy11936 309 IEPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSF 351 (548)
Q Consensus 309 ~~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~ 351 (548)
....++|+||.- .|...+...|...+.... ..+|++|++...
T Consensus 130 ~~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCceEEEecccc-ccccccchhhhcccccccccccceeeeccccc
Confidence 355699999985 488888888888888764 357889988753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.66 E-value=0.019 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=24.1
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
...+|.+++|.|+=|||||||.|.|+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 346899999999999999999998874
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.66 E-value=0.017 Score=55.72 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLa 193 (548)
++||-|+.|||||||...|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998774
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.65 E-value=0.04 Score=49.24 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.6
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
.++..-+.+ .|.=+.|+|++|+|||||.-.|...
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 445444444 6888999999999999998776643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.58 E-value=0.019 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.|+|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.018 Score=52.49 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=29.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC-C-eEEEEecCHHHH
Q psy11936 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWK-K-TLLIVSHDQSFL 352 (548)
Q Consensus 311 P~lLLLDEPTn~LD~~s~~~L~~~L~~~~-~-TvIiVSHD~~~l 352 (548)
..++|+||- ..+.......|...|.... . -++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 469999996 4677888888888888764 3 456666665543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.47 E-value=0.019 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLa 193 (548)
++.|+|..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999884
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.02 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|+.|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.45 E-value=0.022 Score=52.38 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG 194 (548)
...+.|.||.|+||||+++.|+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999985
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.011 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.021 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|||..|+|||||++-+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999887643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.013 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.34 E-value=0.017 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=14.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH
Q psy11936 171 NGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 171 ~Ge~igLvGpNGsGKSTLLklLa 193 (548)
...++++|||+|+||||.+==|+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999765555
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.30 E-value=0.022 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999987754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.022 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|+|||||++-+.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999887643
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.20 E-value=0.023 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++||.|+-||||||+.++|+.
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999963
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.022 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++.++..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999887753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.10 E-value=0.024 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|+|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.07 E-value=0.046 Score=48.84 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=26.1
Q ss_pred eeEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 161 LFVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 161 iL~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
.++..-+.+ .|.-+.|.|++|+|||||.-.|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555556 788899999999999999877764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.03 E-value=0.023 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+++|+|..|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999877653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.029 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+++|+|..|+|||||++.+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999998877643
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.028 Score=52.99 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
+.|.||.|||||+|+++|+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 789999999999999999963
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.37 E-value=0.021 Score=52.82 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|.||.|+||||+++.++.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 356779999999999999984
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.27 E-value=0.031 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.+||||...|||||||+.|++.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999974
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.22 E-value=0.043 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
.+++||.-+||||||++.|+|..+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.03 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
-+|+|+||-++||||||+.|.|.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 37999999999999999999975
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.04 E-value=0.045 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASRDL 197 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~~~ 197 (548)
.+++||.-+||||||+++|+|..+
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Confidence 488999999999999999999653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.02 E-value=0.042 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|||..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999998864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.00 E-value=0.036 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.|||||..-+||||||+.|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999974
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.94 E-value=0.04 Score=49.21 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy11936 175 YGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG~ 195 (548)
+||+|.-.+|||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999974
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.039 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG 194 (548)
.+|+|=|.=||||||+++.|+-
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3789999999999999999984
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.56 E-value=0.043 Score=52.49 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.4
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
|.=+.+-+|++++|+|+.|+|||||+..|+
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 345689999999999999999999988775
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.38 E-value=0.049 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.|+|..|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988753
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.22 E-value=0.052 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy11936 173 RRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 173 e~igLvGpNGsGKSTLLklLaG~ 195 (548)
=.+||||-.-+|||||++.|++.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.02 E-value=0.049 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
=+.+|||+|||||-|.+.||+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.75 E-value=0.099 Score=46.20 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=24.0
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHc
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG 194 (548)
++..-+. -.|.=+.|.|++|+|||||.-.|..
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4443333 4788899999999999998866653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.072 Score=51.63 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++||+|+|||.|.+.|+-
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 478999999999999999985
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.70 E-value=0.084 Score=47.77 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999863
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.36 E-value=0.081 Score=50.19 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy11936 174 RYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLa 193 (548)
-+||+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999884
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.08 E-value=0.099 Score=47.65 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|.||.|||||-|+.+++.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999974
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.099 Score=48.08 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=32.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHH
Q psy11936 311 PTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFL 352 (548)
Q Consensus 311 P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l 352 (548)
..++|+||.=. |...++..|...+.... ..+|++|++..-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999854 88888989999998753 5788899887654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.11 Score=46.94 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CeEEEEecCHHHH
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQSFL 352 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~~~--~TvIiVSHD~~~l 352 (548)
+..|+|+||. -.|...+...|..+|.+.. .-+|++|++..-+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 3679999975 4566788889999998763 4568889997643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.72 E-value=0.091 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred EECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 169 IANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 169 I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
++.+..+.+.||.|+|||||.+.|++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence 367789999999999999999999964
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.63 E-value=0.11 Score=46.55 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
.+||+|.=.+|||||+..|+|.
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEEEccCCcHHHHHHHHHhh
Confidence 4899999999999999999974
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=0.086 Score=48.37 Aligned_cols=21 Identities=57% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
++.|.|.=||||||||+-|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.37 E-value=0.11 Score=49.63 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy11936 175 YGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLa 193 (548)
+||+|..|||||||+-.|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.06 E-value=0.13 Score=48.86 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=28.2
Q ss_pred EEECCcEEEEECCCCCcHHHHHHHHHcCCCCCCCCeEEEEece
Q psy11936 168 LIANGRRYGLVGPNGHGKTTLLRHIASRDLKVPPNIDILYCEQ 210 (548)
Q Consensus 168 ~I~~Ge~igLvGpNGsGKSTLLklLaG~~~~~~~~g~I~~~~q 210 (548)
-|+.|.++-|.||+|||||||+-.++.. .....+.+.|.+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~--~q~~g~~~vyIDt 96 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDA 96 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH--HHHTTCEEEEEES
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH--HhcCCCEEEEEEC
Confidence 4678999999999999999997555431 1122345555443
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.26 E-value=0.064 Score=51.22 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
|.=+.|-+|++++|+|+.|+|||||+..++
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHH
Confidence 344688999999999999999999997654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.23 E-value=0.13 Score=51.09 Aligned_cols=43 Identities=16% Similarity=0.022 Sum_probs=33.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhcCCeEEEEecCHHHHHh
Q psy11936 312 TLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQSFLDN 354 (548)
Q Consensus 312 ~lLLLDEPTn~LD~~s~~~L~~~L~~~~~TvIiVSHD~~~l~~ 354 (548)
=++++||--+-........+....+.++..+++++.++..+..
T Consensus 278 v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 278 LWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp EEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred eEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 3688899877666556666666777888999999999888754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.05 E-value=0.087 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy11936 310 EPTLLLLDEPTNHLDLNAVIWLDNYLQG 337 (548)
Q Consensus 310 ~P~lLLLDEPTn~LD~~s~~~L~~~L~~ 337 (548)
+..||++|| .+-+++..+..|.+.+.+
T Consensus 127 ~~gvl~iDE-i~~~~~~~~~aLl~~me~ 153 (333)
T d1g8pa_ 127 NRGYLYIDE-CNLLEDHIVDLLLDVAQS 153 (333)
T ss_dssp TTEEEEETT-GGGSCHHHHHHHHHHHHH
T ss_pred cccEeeccc-HHHHHHHHHHHHhhhhcC
Confidence 567999999 467888899999998875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.61 E-value=0.24 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred eEeeeEEEECCcEEEEECCCCCcHHHHHHHHHcC
Q psy11936 162 FVNANLLIANGRRYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 162 L~~vsl~I~~Ge~igLvGpNGsGKSTLLklLaG~ 195 (548)
+.-+-.....| .+.|+||.|||||.|.+.|++.
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 33334555555 5667899999999999999974
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.86 E-value=0.2 Score=45.04 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999998875
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.81 E-value=0.1 Score=50.06 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.7
Q ss_pred eeeEEEECCcEEEEECCCCCcHHHHHHHHH
Q psy11936 164 NANLLIANGRRYGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 164 ~vsl~I~~Ge~igLvGpNGsGKSTLLklLa 193 (548)
|.=+.|-.|++++|+|+.|+|||||+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 445789999999999999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.73 E-value=0.2 Score=47.39 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
-+.|||+.|+|||+|+.-|+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 457999999999999998874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.68 E-value=0.21 Score=44.98 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.|||+.|+|||+++.-|+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHH
Confidence 57999999999999998874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.71 E-value=0.19 Score=48.96 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|.|=|+=||||||+++.|+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC
T ss_pred EEEEECCcCCCHHHHHHHHHH
Confidence 588999999999999999984
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.57 E-value=0.23 Score=48.92 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
+.++||+|||||-|.|.||.
T Consensus 71 iLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eeeeCCCCccHHHHHHHHHh
Confidence 56789999999999999985
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.46 E-value=0.23 Score=45.24 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy11936 175 YGLVGPNGHGKTTLLRHIA 193 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLa 193 (548)
+||+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999885
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=0.24 Score=47.75 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
.+.++||+|+|||.|.+.|+-
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 477899999999999999984
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.71 E-value=0.29 Score=47.71 Aligned_cols=21 Identities=48% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy11936 174 RYGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG 194 (548)
+|.|=|+=||||||+++.|+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEECCccCCHHHHHHHHHH
Confidence 578889999999999999985
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.19 E-value=0.34 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy11936 175 YGLVGPNGHGKTTLLRHIAS 194 (548)
Q Consensus 175 igLvGpNGsGKSTLLklLaG 194 (548)
++++|.-.+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999964
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.52 E-value=0.23 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy11936 174 RYGLVGPNGHGKTTLLRHIASR 195 (548)
Q Consensus 174 ~igLvGpNGsGKSTLLklLaG~ 195 (548)
+|.|=|+=||||||+++.|+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=80.78 E-value=0.41 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy11936 172 GRRYGLVGPNGHGKTTLLRHIASRD 196 (548)
Q Consensus 172 Ge~igLvGpNGsGKSTLLklLaG~~ 196 (548)
+=.++|||..-+|||||++.|.|..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEEecCccchhhhhhhhhccc
Confidence 3359999999999999999999853
|