Psyllid ID: psy11956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEEEcccEEEEEEcccccccccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEHccccEEEEEEEccccccccccEEEEcccccEccEcccccc
Coil and Loop (DISEMBL)
mssasagnrrmNIDVIKLIEskhegttlkGLKEFCVkffgprdtpyeggVWKVRVhlpehypfkspsigfmnkmyhpnideVSAVFYYGGVWKVrvhlpehypfkspsigfmnkmyhpnidevsge
Flexible Loop (DISEMBL)
mssasagnrrmnidviklieskhegttlkgLKEFCVKFfgprdtpyeGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE
Low Complexity Region (SEG)
MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE
Disordered region (IsUnstruct)
***********NIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY**********
Disordered Region (DISOPRED)
************IDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP*I******
Disordered Region (DISEMBL)
********RRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE
Disordered Region (DISPRO)
*********RMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P62257	183	Ubiquitin-conjugating enz	yes	N/A	0.674	0.464	0.741	7e-32
P62256	183	Ubiquitin-conjugating enz	yes	N/A	0.674	0.464	0.741	7e-32
Q32LN1	183	Ubiquitin-conjugating enz	yes	N/A	0.674	0.464	0.741	7e-32
P28263	218	Ubiquitin-conjugating enz	yes	N/A	0.634	0.366	0.543	4e-21
Q9P7R4	184	Ubiquitin-conjugating enz	yes	N/A	0.626	0.429	0.55	3e-20
P42748	187	Ubiquitin-conjugating enz	yes	N/A	0.634	0.427	0.506	1e-19
P42749	185	Ubiquitin-conjugating enz	no	N/A	0.626	0.427	0.512	1e-19
P16577	184	Ubiquitin-conjugating enz	N/A	N/A	0.634	0.434	0.530	9e-19
P42750	183	Ubiquitin-conjugating enz	no	N/A	0.626	0.431	0.5	5e-18
Q9FZ48	153	Ubiquitin-conjugating enz	no	N/A	0.611	0.503	0.358	1e-10

>sp|P62257|UBE2H_MOUSE Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct: 1  MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK++HPNIDE S  
Sbjct: 61 YPFKSPSIGFMNKIFHPNIDEASGT 85

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Capable, in vitro, to ubiquitinate histone H2A.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P62256|UBE2H_HUMAN Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct: 1  MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK++HPNIDE S  
Sbjct: 61 YPFKSPSIGFMNKIFHPNIDEASGT 85

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Capable, in vitro, to ubiquitinate histone H2A.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q32LN1|UBE2H_BOVIN Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct: 1  MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK++HPNIDE S  
Sbjct: 61 YPFKSPSIGFMNKIFHPNIDEASGT 85

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. Capable, in vitro, to ubiquitinate histone H2A.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P28263|UBC8_YEAST Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC8 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTLK-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          S+  RR+  DV+KL+ S H+   +   ++EF VKF GP+DTPYE GVW++ V LP++YP+
Sbjct: 2  SSSKRRIETDVMKLLMSDHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPY 61

Query: 64 KSPSIGFMNKMYHPNIDEVSA 84
          KSPSIGF+NK++HPNID  S 
Sbjct: 62 KSPSIGFVNKIFHPNIDIASG 82

Catalyzes the covalent attachment of ubiquitin to other proteins. Capable, in vitro, to ubiquitinate histone H2A. Has a role in the negative regulation of gluconeogenesis. Required for proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9P7R4|UBC8_SCHPO Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 61/80 (76%), Gaps = 1/80 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTLK-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          S+  RR+  DV+KL+ S +E T +   ++EF V+F GP +TPY GG+WKV V LP  YP+
Sbjct: 2  SSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPW 61

Query: 64 KSPSIGFMNKMYHPNIDEVS 83
          KSPSIGF+N+++HPNIDE+S
Sbjct: 62 KSPSIGFVNRIFHPNIDELS 81

Catalyzes the covalent attachment of ubiquitin to other proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P42748|UBC4_ARATH Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 65/81 (80%), Gaps = 1/81 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          S+ ++R  +D++KL+ S ++  T+  G++EF V+F GP+D+ Y+GGVWK+RV LP+ YP+
Sbjct: 2  SSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPY 61

Query: 64 KSPSIGFMNKMYHPNIDEVSA 84
          KSPS+GF+ K+YHPN+DE+S 
Sbjct: 62 KSPSVGFITKIYHPNVDELSG 82

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          S+ ++R  +D++KL+ S ++   +  G++EF V+F GP+D+ YEGGVWK+RV LP+ YP+
Sbjct: 2  SSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPY 61

Query: 64 KSPSIGFMNKMYHPNIDEVS 83
          KSPS+GF+ K+YHPN+DE+S
Sbjct: 62 KSPSVGFITKIYHPNVDEMS 81

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTLK-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          S+ ++R  +D++KL+ S ++   +  G+ EF V F GP+D+ Y+GGVWKVRV L E YP+
Sbjct: 2  SSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPY 61

Query: 64 KSPSIGFMNKMYHPNIDEVSA 84
          KSPSIGF NK+YHPN+DE+S 
Sbjct: 62 KSPSIGFTNKIYHPNVDEMSG 82

Catalyzes the covalent attachment of ubiquitin to other proteins.

Triticum aestivum (taxid: 4565)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P42750|UBC6_ARATH Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 61/80 (76%), Gaps = 1/80 (1%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          ++ ++R  +D++KL+ S ++  T+   L+ F V F GP D+ Y+GGVWK++V LPE YP+
Sbjct: 2  ASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPY 61

Query: 64 KSPSIGFMNKMYHPNIDEVS 83
          KSPS+GF+NK+YHPN+DE S
Sbjct: 62 KSPSVGFVNKIYHPNVDESS 81

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9FZ48|UBC36_ARATH Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 9  RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          RR+  +  +L+     G +     + ++ F V   GP  +PYEGGV+K+ + LPE YP  
Sbjct: 8  RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67

Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
          +P + F+ K+YHPNID++  +
Sbjct: 68 APKVRFLTKIYHPNIDKLGRI 88

Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Required for postreplication repair of UV-damaged DNA and for adaptating root developmental programs to suboptimal availability of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
403182933	442	AAEL017518-PA [Aedes aegypti]	0.666	0.190	0.857	2e-37
170058935	182	ubiquitin-conjugating enzyme E2 H [Culex	0.674	0.467	0.858	1e-35
157136732	182	ubiquitin-conjugating enzyme h [Aedes ae	0.674	0.467	0.847	1e-35
31229836	182	AGAP001068-PA [Anopheles gambiae str. PE	0.674	0.467	0.847	3e-35
91095029	181	PREDICTED: similar to ubiquitin-conjugat	0.674	0.469	0.823	5e-35
312378529	182	hypothetical protein AND_09899 [Anophele	0.674	0.467	0.823	2e-34
340710962	303	PREDICTED: ubiquitin-conjugating enzyme	0.674	0.280	0.811	2e-34
328784887	304	PREDICTED: ubiquitin-conjugating enzyme	0.674	0.279	0.811	2e-34
380014652	303	PREDICTED: ubiquitin-conjugating enzyme	0.674	0.280	0.811	3e-34
328708800	182	PREDICTED: ubiquitin-conjugating enzyme	0.674	0.467	0.811	3e-34

>gi|403182933|gb|EJY57730.1| AAEL017518-PA [Aedes aegypti]

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/84 (85%), Positives = 75/84 (89%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKFFGP+ TPYEGGVWKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFFGPKATPYEGGVWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSA 84
          YPFKSPSIGFMNK+YHPNIDEVS 
Sbjct: 61 YPFKSPSIGFMNKIYHPNIDEVSG 84

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058935|ref|XP_001865141.1| ubiquitin-conjugating enzyme E2 H [Culex quinquefasciatus] gi|167877836|gb|EDS41219.1| ubiquitin-conjugating enzyme E2 H [Culex quinquefasciatus]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 75/85 (88%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKFFGPR TPYEGGVWKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFFGPRGTPYEGGVWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFMNKIYHPNIDEVSGT 85

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136732|ref|XP_001656897.1| ubiquitin-conjugating enzyme h [Aedes aegypti] gi|108869878|gb|EAT34103.1| AAEL013633-PA [Aedes aegypti]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 75/85 (88%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKFFGP+ TPYEGGVWKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFFGPKATPYEGGVWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFMNKIYHPNIDEVSGT 85

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31229836|ref|XP_318292.1| AGAP001068-PA [Anopheles gambiae str. PEST] gi|30174976|gb|EAA43707.1| AGAP001068-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 75/85 (88%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKFFGPR TPYEGGVWKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFFGPRGTPYEGGVWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGF+NK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFINKIYHPNIDEVSGT 85

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91095029|ref|XP_966439.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2 H isoform 1 [Tribolium castaneum] gi|270014763|gb|EFA11211.1| hypothetical protein TcasGA2_TC005175 [Tribolium castaneum]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 75/85 (88%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKF+GPR TPYEGGVWKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFYGPRGTPYEGGVWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMN++YHPNIDE+S  
Sbjct: 61 YPFKSPSIGFMNRVYHPNIDEISGT 85

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378529|gb|EFR25080.1| hypothetical protein AND_09899 [Anopheles darlingi]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 73/85 (85%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVKFFGPR+TPYEGGVWKVRV LPE 
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTILGGLNEFCVKFFGPRETPYEGGVWKVRVDLPEQ 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDE S  
Sbjct: 61 YPFKSPSIGFMNKIYHPNIDEASGT 85

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710962|ref|XP_003394051.1| PREDICTED: ubiquitin-conjugating enzyme E2 H-like [Bombus terrestris]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 74/85 (87%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DV+KLIESKHE T L GL EF VKF+GPR TPYEGG+WKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVLKLIESKHEVTILGGLNEFSVKFYGPRGTPYEGGIWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFMNKVYHPNIDEVSGT 85

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784887|ref|XP_395791.3| PREDICTED: ubiquitin-conjugating enzyme E2 H [Apis mellifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 74/85 (87%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DV+KLIESKHE T L GL EF VKF+GPR TPYEGG+WKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVLKLIESKHEVTILGGLNEFSVKFYGPRGTPYEGGIWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFMNKVYHPNIDEVSGT 85

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014652|ref|XP_003691338.1| PREDICTED: ubiquitin-conjugating enzyme E2 H-like [Apis florea]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 74/85 (87%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DV+KLIESKHE T L GL EF VKF+GPR TPYEGG+WKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVLKLIESKHEVTILGGLNEFSVKFYGPRGTPYEGGIWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGFMNK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFMNKVYHPNIDEVSGT 85

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708800|ref|XP_003243801.1| PREDICTED: ubiquitin-conjugating enzyme E2 H-like [Acyrthosiphon pisum]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 74/85 (87%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          MSS SAG RRM+ DVIKLIESKHE T L GL EFCVK +GPR TPYEGG+WKVRVHLPEH
Sbjct: 1  MSSPSAGKRRMDTDVIKLIESKHEVTLLNGLNEFCVKLYGPRGTPYEGGLWKVRVHLPEH 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAV 85
          YPFKSPSIGF+NK+YHPNIDEVS  
Sbjct: 61 YPFKSPSIGFINKIYHPNIDEVSGT 85

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0029996	183	Ubc-E2H "Ubc-E2H" [Drosophila	0.658	0.453	0.795	9.8e-32
ZFIN|ZDB-GENE-030616-67	183	ube2h "ubiquitin-conjugating e	0.658	0.453	0.759	5.4e-31
UNIPROTKB|Q32LN1	183	UBE2H "Ubiquitin-conjugating e	0.658	0.453	0.759	8.8e-31
UNIPROTKB|E2RJH3	183	UBE2H "Uncharacterized protein	0.658	0.453	0.759	8.8e-31
UNIPROTKB|C9JZY6	123	UBE2H "Ubiquitin-conjugating e	0.658	0.674	0.759	8.8e-31
UNIPROTKB|P62256	183	UBE2H "Ubiquitin-conjugating e	0.658	0.453	0.759	8.8e-31
MGI|MGI:104632	183	Ube2h "ubiquitin-conjugating e	0.658	0.453	0.759	8.8e-31
UNIPROTKB|F1SMR7	172	UBE2H "Uncharacterized protein	0.579	0.424	0.767	1.7e-27
UNIPROTKB|F1NRU8	165	UBE2H "Uncharacterized protein	0.515	0.393	0.784	1.2e-24
UNIPROTKB|C9JZG9	103	UBE2H "Ubiquitin-conjugating e	0.515	0.631	0.784	1.2e-24

FB|FBgn0029996 Ubc-E2H "Ubc-E2H" [Drosophila melanogaster (taxid:7227)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/83 (79%), Positives = 73/83 (87%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS SAG RRM+ DVIKLIESKHE T L GL EF VKFFGP +TPYEGGVWKVRV+LP++
Sbjct:     1 MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTETPYEGGVWKVRVYLPDN 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGF+NK+YHPNIDE S
Sbjct:    61 YPFKSPSIGFVNKIYHPNIDESS 83

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-030616-67 ube2h "ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILSGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q32LN1 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RJH3 UBE2H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|C9JZY6 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P62256 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0005524 "ATP binding" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

MGI|MGI:104632 Ube2h "ubiquitin-conjugating enzyme E2H" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/83 (75%), Positives = 70/83 (84%)

Query:     1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
             MSS S G RRM+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct:     1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 60

Query:    61 YPFKSPSIGFMNKMYHPNIDEVS 83
             YPFKSPSIGFMNK++HPNIDE S
Sbjct:    61 YPFKSPSIGFMNKIFHPNIDEAS 83

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

UNIPROTKB|F1SMR7 UBE2H "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 56/73 (76%), Positives = 63/73 (86%)

Query:    11 MNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGF 70
             M+ DV+KLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ YPFKSPSIGF
Sbjct:     1 MDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGF 60

Query:    71 MNKMYHPNIDEVS 83
             MNK++HPNIDE S
Sbjct:    61 MNKIFHPNIDEAS 73

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1NRU8 UBE2H "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 51/65 (78%), Positives = 56/65 (86%)

Query:    19 IESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN 78
             IESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ YPFKSPSIGFMNK++HPN
Sbjct:     1 IESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN 60

Query:    79 IDEVS 83
             IDE S
Sbjct:    61 IDEAS 65

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|C9JZG9 UBE2H "Ubiquitin-conjugating enzyme E2 H" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 51/65 (78%), Positives = 56/65 (86%)

Query:    19 IESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN 78
             IESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ YPFKSPSIGFMNK++HPN
Sbjct:    35 IESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN 94

Query:    79 IDEVS 83
             IDE S
Sbjct:    95 IDEAS 99

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P7R4	UBC8_SCHPO	6, ., 3, ., 2, ., 1, 9	0.55	0.6269	0.4293	yes	N/A
P42748	UBC4_ARATH	6, ., 3, ., 2, ., 1, 9	0.5061	0.6349	0.4278	yes	N/A
P62257	UBE2H_MOUSE	6, ., 3, ., 2, ., 1, 9	0.7411	0.6746	0.4644	yes	N/A
Q32LN1	UBE2H_BOVIN	6, ., 3, ., 2, ., 1, 9	0.7411	0.6746	0.4644	yes	N/A
P62256	UBE2H_HUMAN	6, ., 3, ., 2, ., 1, 9	0.7411	0.6746	0.4644	yes	N/A
P28263	UBC8_YEAST	6, ., 3, ., 2, ., 1, 9	0.5432	0.6349	0.3669	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.824
3rd Layer	6.3.2	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-22
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-22
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-21
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	7e-21
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	7e-16
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	6e-15
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	1e-14
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	3e-10
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-09
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	4e-06

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 85.3 bits (212), Expect = 2e-22
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          L E+     GP DTPYEGG++K+ +  PE YPFK P + F+ K+YHPN+DE
Sbjct: 28 LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDE 78

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 85.8 bits (213), Expect = 2e-22
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLK-----GLKEFCVKFFGPRDTPYEGGVWKVRV 55
          MSS SA  +R+  ++ KL +    G +        L  +     GP DTPYEGG++K+ +
Sbjct: 1  MSSPSA-LKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTL 59

Query: 56 HLPEHYPFKSPSIGFMNKMYHPNIDE 81
            PE YPFK P + F  K++HPN+D 
Sbjct: 60 EFPEDYPFKPPKVRFTTKIFHPNVDP 85

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 83.4 bits (207), Expect = 1e-21
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          L E+ V   GP  TPYEGGV+K+ +  PE YPFK P + F  K+YHPN+D 
Sbjct: 26 LFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFTTKIYHPNVDP 76

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 81.2 bits (201), Expect = 7e-21
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 22 KHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
                 + L E+     GP  TPYEGGV+K+ +  PE YPFK P + F+ K+YHPN+D 
Sbjct: 18 TAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITKIYHPNVDS 77

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 68.4 bits (168), Expect = 7e-16
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 64  KSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
           K P  G   +    N+ E            Y GG++K+ +  PE YPFK P + F+ K+Y
Sbjct: 13  KDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIY 72

Query: 117 HPNIDE 122
           HPN+DE
Sbjct: 73  HPNVDE 78

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 66.1 bits (162), Expect = 6e-15
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 64  KSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
           K P  G        N+ E            Y GGV+K+ +  PE YPFK P + F  K+Y
Sbjct: 11  KDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFTTKIY 70

Query: 117 HPNIDEVSGE 126
           HPN+D  SGE
Sbjct: 71  HPNVDP-SGE 79

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 29 KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 82
             + F +   GP  TPYEGG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 29 GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L  +     GP D+PY GGV+ + +  P  YPFK P + F  K+YHPNI+
Sbjct: 30 LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y GG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 46  YEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GGV+ + +  P  YPFK P + F  K+YHPNI+
Sbjct: 45  YAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0419|consensus	152		100.0
KOG0417|consensus	148		100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425|consensus	171		100.0
KOG0418|consensus	200		100.0
KOG0426|consensus	165		100.0
KOG0424|consensus	158		99.97
KOG0421|consensus	175		99.97
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.97
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.96
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.96
KOG0422|consensus	153		99.95
KOG0894|consensus	244		99.94
KOG0416|consensus	189		99.94
KOG0427|consensus	161		99.93
KOG0420|consensus	184		99.91
KOG0423|consensus	223		99.91
KOG0428|consensus	314		99.84
KOG0895|consensus	1101		99.48
KOG0429|consensus	258		99.35
KOG0895|consensus	1101		99.33
KOG0896|consensus	138		99.23
KOG0417|consensus	148		98.85
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	98.85
KOG0416|consensus	189		98.75
KOG0419|consensus	152		98.52
PLN00172	147	ubiquitin conjugating enzyme; Provisional	98.49
KOG0420|consensus	184		98.45
KOG0424|consensus	158		98.44
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	98.42
KOG0418|consensus	200		98.39
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	98.32
KOG0425|consensus	171		98.3
KOG0422|consensus	153		98.12
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	98.08
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	98.03
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.89
KOG0421|consensus	175		97.88
KOG0426|consensus	165		97.82
KOG0897|consensus	122		97.54
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.44
KOG3357|consensus	167		97.35
KOG0423|consensus	223		97.2
KOG0427|consensus	161		97.13
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.47
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	96.46
smart00591	107	RWD domain in RING finger and WD repeat containing	94.6
KOG0896|consensus	138		91.19
KOG2391|consensus	365		88.66
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	88.16
KOG0894|consensus	244		86.53
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	85.04
KOG0429|consensus	258		83.97
KOG4018|consensus	215		81.54

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-40  Score=225.76  Aligned_cols=115  Identities=32%  Similarity=0.608  Sum_probs=107.5

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY   75 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~   75 (126)
                      |+++ .|.+||++|+++|++++..++.+    + |++.|++.|.||++||||||.|++.|.||++||++||+|+|.++||
T Consensus         1 ~~s~-~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~   79 (153)
T COG5078           1 MSSP-SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF   79 (153)
T ss_pred             CCch-hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence            4532 39999999999999999888887    3 9999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        76 Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||||+ .+|+||+   .+.|+|++++++||      ++++++|..||.++.
T Consensus        80 HPNV~-~~G~vCLdIL~~~WsP~~~l~sIL------lsl~slL~~PN~~~P  123 (153)
T COG5078          80 HPNVD-PSGNVCLDILKDRWSPVYTLETIL------LSLQSLLLSPNPDSP  123 (153)
T ss_pred             CCCcC-CCCCChhHHHhCCCCccccHHHHH------HHHHHHHcCCCCCCC
Confidence            99999 6999999   89999999999998      999999999998763

>KOG0419|consensus

Probab=100.00  E-value=6.2e-39  Score=212.91  Aligned_cols=115  Identities=29%  Similarity=0.592  Sum_probs=110.1

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      ||  ++|.|||++|+++|++++..|+++    +|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+++||
T Consensus         1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH   78 (152)
T KOG0419|consen    1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH   78 (152)
T ss_pred             CC--chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence            78  789999999999999999999987    899999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS  124 (126)
Q Consensus        77 pnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~  124 (126)
                      |||| ++|.+|+   ...|+|.+++..||      .+++++|.+||.++..
T Consensus        79 PNvy-a~G~iClDiLqNrWsp~Ydva~IL------tsiQslL~dPn~~sPa  122 (152)
T KOG0419|consen   79 PNVY-ADGSICLDILQNRWSPTYDVASIL------TSIQSLLNDPNPNSPA  122 (152)
T ss_pred             CCcC-CCCcchHHHHhcCCCCchhHHHHH------HHHHHHhcCCCCCCcc
Confidence            9999 5899999   78999999999998      9999999999988743

>KOG0417|consensus

Probab=100.00  E-value=8.1e-39  Score=217.16  Aligned_cols=108  Identities=30%  Similarity=0.681  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS   83 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~   83 (126)
                      .+||.+|+++|++++..++.+    +|++.|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ ..
T Consensus         3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~   81 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SN   81 (148)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-cc
Confidence            569999999999999999886    7899999999999999999999999999999999999999999999999999 59


Q ss_pred             ceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         84 AVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        84 g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |.||+   +..|+|+++++++|      .+++++|-+||.|+
T Consensus        82 G~IclDILk~~WsPAl~i~~Vl------lsI~sLL~~Pnpdd  117 (148)
T KOG0417|consen   82 GRICLDILKDQWSPALTISKVL------LSICSLLSDPNPDD  117 (148)
T ss_pred             ccchHHhhhccCChhhHHHHHH------HHHHHHhcCCCCCc
Confidence            99999   78899999999998      99999999999986

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=4.4e-36  Score=208.57  Aligned_cols=110  Identities=27%  Similarity=0.592  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      +++||++|+++|++++..++.+    +|+..|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+. 
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-   81 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-   81 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-
Confidence            6899999999999998888876    78999999999999999999999999999999999999999999999999995 


Q ss_pred             cceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         83 SAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        83 ~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        82 ~G~iCl~iL~~~W~p~~ti~~iL------~~i~~ll~~P~~~~p  119 (152)
T PTZ00390         82 LGRICLDILKDKWSPALQIRTVL------LSIQALLSAPEPDDP  119 (152)
T ss_pred             CCeEECccCcccCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999999   68999999999997      999999999998763

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=2.9e-35  Score=203.54  Aligned_cols=109  Identities=26%  Similarity=0.608  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS   83 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~   83 (126)
                      .+||++|+++|++++..++.+    +|+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+. +
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~   81 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N   81 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence            699999999999998888765    78999999999999999999999999999999999999999999999999995 9


Q ss_pred             ceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         84 AVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        84 g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        82 G~iCl~il~~~W~p~~ti~~il------~~i~~ll~~P~~~~p  118 (147)
T PLN00172         82 GSICLDILRDQWSPALTVSKVL------LSISSLLTDPNPDDP  118 (147)
T ss_pred             CEEEcccCcCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            99999   68999999999997      999999999998863

>KOG0425|consensus

Probab=100.00  E-value=6.9e-35  Score=198.66  Aligned_cols=117  Identities=27%  Similarity=0.511  Sum_probs=107.9

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY   75 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~   75 (126)
                      |++ +.+..-|+++|++|++.+.+++.+     +|+++|.|.|+||.+|+|+||.|+..+.||++||.+||+++|.+++|
T Consensus         1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw   79 (171)
T KOG0425|consen    1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW   79 (171)
T ss_pred             Ccc-chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence            443 447788999999999999999886     69999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        76 Hpnv~~~~g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||||+. +|.+|.                .+.|.|..++++|+      ++++++|..||.++..+
T Consensus        80 HPNvy~-~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIl------lSiIsmL~~PN~~SPAN  138 (171)
T KOG0425|consen   80 HPNVYE-DGDVCISILHPPGDDPSGYELPSERWLPVQTVETIL------LSIISMLNSPNDESPAN  138 (171)
T ss_pred             CCCcCC-CCCEEEEeecCCCCCcccCCChhhccCCccchhHhH------HHHHHHHcCCCCCCccc
Confidence            999995 999999                46899999999997      99999999999987654

>KOG0418|consensus

Probab=100.00  E-value=7.3e-34  Score=198.77  Aligned_cols=113  Identities=30%  Similarity=0.668  Sum_probs=104.0

Q ss_pred             CCCchhhhhHHHHHHHHHHhcC---CCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          1 MSSASAGNRRMNIDVIKLIESK---HEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~---~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ||  . +.+||++|.+++.+++   ..++..    +|+.+....|.||++||||||+|.++|++|++|||+||+|+|.|+
T Consensus         1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk   77 (200)
T KOG0418|consen    1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK   77 (200)
T ss_pred             Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence            66  5 8999999999998877   344443    688999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         74 MYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        74 i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      ||||||+..+|.||+   .+.|.+++|++++|      ++++++|..|+.++
T Consensus        78 IwHPnVSs~tGaICLDilkd~Wa~slTlrtvL------islQalL~~pEp~d  123 (200)
T KOG0418|consen   78 IWHPNVSSQTGAICLDILKDQWAASLTLRTVL------ISLQALLCAPEPKD  123 (200)
T ss_pred             eecCCCCcccccchhhhhhcccchhhhHHHHH------HHHHHHHcCCCCCC
Confidence            999999999999999   79999999999998      99999999888765

>KOG0426|consensus

Probab=100.00  E-value=9.1e-34  Score=188.55  Aligned_cols=114  Identities=25%  Similarity=0.461  Sum_probs=107.6

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY   75 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~   75 (126)
                      |+  ..|+|||++||++|..++++|+.+     +|+++|.+.|.||++|+|+||.|..++.||++||.+||+++|.-.+|
T Consensus         1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f   78 (165)
T KOG0426|consen    1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF   78 (165)
T ss_pred             Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence            56  689999999999999999999987     78999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        76 Hpnv~~~~g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||||+ ++|++|.                .+.|+|..+++.||      ++..+++.+||.++-
T Consensus        79 HPNiy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKIL------LSV~SMLaEPNdESg  135 (165)
T KOG0426|consen   79 HPNIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKIL------LSVVSMLAEPNDESG  135 (165)
T ss_pred             cCccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHH------HHHHHHHcCCCcccC
Confidence            99999 5999999                36899999999998      999999999998764

>KOG0424|consensus

Probab=99.97  E-value=4.6e-32  Score=182.48  Aligned_cols=114  Identities=25%  Similarity=0.463  Sum_probs=106.3

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc---------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEe
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL---------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM   71 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~---------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~   71 (126)
                      ||  +-++.||+.|-+.+.++..-|+.+         .|++.|++.|.|+++|+||||.|.+.+.||++||.+||+++|.
T Consensus         1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~   78 (158)
T KOG0424|consen    1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK   78 (158)
T ss_pred             Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence            67  568999999999999999988876         5788999999999999999999999999999999999999999


Q ss_pred             eeccccccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         72 NKMYHPNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        72 t~i~Hpnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ++.|||||| ++|+|||     ..+|+|++++..||      ++++.+|.+||+.+.
T Consensus        79 ~pl~HPNVy-psgtVcLsiL~e~~~W~paitikqiL------~gIqdLL~~Pn~~~p  128 (158)
T KOG0424|consen   79 PPLFHPNVY-PSGTVCLSILNEEKDWRPAITIKQIL------LGIQDLLDTPNITSP  128 (158)
T ss_pred             CCCcCCCcC-CCCcEehhhhccccCCCchhhHHHHH------HHHHHHhcCCCCCCc
Confidence            999999999 5999999     34599999999998      999999999999764

>KOG0421|consensus

Probab=99.97  E-value=1.6e-31  Score=180.04  Aligned_cols=112  Identities=24%  Similarity=0.517  Sum_probs=106.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ....|||++||..|+....+|+++    +|++.|..+|.||++|+|+|..|++.+.||.+||+.||+|+|.+++||||||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD  107 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD  107 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence            356799999999999999999987    8999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . .|.||+   .+.|+..+++++||      +++++++=+||..+.
T Consensus       108 ~-~GnIcLDILkdKWSa~YdVrTIL------LSiQSLLGEPNn~SP  146 (175)
T KOG0421|consen  108 L-SGNICLDILKDKWSAVYDVRTIL------LSIQSLLGEPNNSSP  146 (175)
T ss_pred             c-cccchHHHHHHHHHHHHhHHHHH------HHHHHHhCCCCCCCc
Confidence            5 999999   89999999999998      999999999998763

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.97  E-value=5.4e-32  Score=185.49  Aligned_cols=106  Identities=29%  Similarity=0.675  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956         10 RMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA   84 (126)
Q Consensus        10 RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g   84 (126)
                      ||++|++++++++..++.+    + |+..|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+ .+|
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G   79 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG   79 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence            8999999999999999876    3 899999999999999999999999999999999999999999999999999 699


Q ss_pred             eeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         85 VFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        85 ~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      ++|+    .+.|+|++++.++|      .+++++|.+|+.+.
T Consensus        80 ~icl~~l~~~~W~p~~~i~~il------~~i~~ll~~p~~~~  115 (140)
T PF00179_consen   80 RICLDILNPESWSPSYTIESIL------LSIQSLLSEPNPED  115 (140)
T ss_dssp             BBGHGGGTTTTC-TTSHHHHHH------HHHHHHHHSTCTTS
T ss_pred             cchhhhhhcccCCcccccccHH------HHHHHHHhCCCCCC
Confidence            9999    34699999999997      89999999887665

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.96  E-value=1.4e-30  Score=178.80  Aligned_cols=108  Identities=31%  Similarity=0.655  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS   83 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~   83 (126)
                      .|||++|++++++++..++.+    +|+..|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+ .+
T Consensus         1 ~~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~   79 (141)
T cd00195           1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-EN   79 (141)
T ss_pred             CchHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CC
Confidence            379999999999998888765    6999999999999999999999999999999999999999999999999999 59


Q ss_pred             ceeee---Cce-eeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         84 AVFYY---GGV-WKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        84 g~ic~---~~~-w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |.+|+   ... |+|++++.+++      .++++.|..|+.+.
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il------~~i~~~l~~p~~~~  116 (141)
T cd00195          80 GKICLSILKTHGWSPAYTLRTVL------LSLQSLLNEPNPSD  116 (141)
T ss_pred             CCCchhhcCCCCcCCcCcHHHHH------HHHHHHHhCCCCCC
Confidence            99999   344 99999999997      99999999888754

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.96  E-value=1.5e-29  Score=174.39  Aligned_cols=108  Identities=31%  Similarity=0.656  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956          9 RRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS   83 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~   83 (126)
                      +||++|++++++++..++.+    + |+..|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||+. +
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~   79 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S   79 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence            69999999999998888764    3 8999999999999999999999999999999999999999999999999995 9


Q ss_pred             ceeee---C-ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         84 AVFYY---G-GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        84 g~ic~---~-~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |.+|+   . +.|+|++++.+++      .+++++|.+|+.++.
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il------~~i~~~l~~p~~~~~  117 (145)
T smart00212       80 GEICLDILKQEKWSPATTLETVL------LSIQSLLSEPNPDSP  117 (145)
T ss_pred             CCEehhhcCCCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            99999   4 7999999999997      899999989887753

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422|consensus

Probab=99.95  E-value=2.3e-28  Score=163.90  Aligned_cols=107  Identities=25%  Similarity=0.531  Sum_probs=98.8

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      |.+||++|+..|++++...+..     .|+..|++.|. |++-||..|.|+++|.||.+|||+||++.|.|+|||||||+
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe   81 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE   81 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence            7899999999999987765432     78899999999 99999999999999999999999999999999999999996


Q ss_pred             ccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956         82 VSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID  121 (126)
Q Consensus        82 ~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~  121 (126)
                       .|.+|+    .+.|+|+.+.+.++      .++++++..|++.
T Consensus        82 -~gqvClPiis~EnWkP~T~teqVl------qaLi~liN~P~pe  118 (153)
T KOG0422|consen   82 -KGQVCLPIISAENWKPATRTEQVL------QALIALINDPEPE  118 (153)
T ss_pred             -CCceeeeeeecccccCcccHHHHH------HHHHHHhcCCCcc
Confidence             799999    79999999999997      8999999998875

>KOG0894|consensus

Probab=99.94  E-value=8.4e-28  Score=171.56  Aligned_cols=105  Identities=23%  Similarity=0.444  Sum_probs=95.1

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec--
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM--   74 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i--   74 (126)
                      |++ .+|.+||++||+.|++++++++.+    +|+.+||.+|.||++|||+||.|+..|.||.+||++||.|+++|+-  
T Consensus         1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR   79 (244)
T KOG0894|consen    1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR   79 (244)
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence            454 689999999999999999999987    8999999999999999999999999999999999999999999953  


Q ss_pred             cccccccccceeee------CceeeEEEEeCCCCCCCCCeeeeeccCCC
Q psy11956         75 YHPNIDEVSAVFYY------GGVWKVRVHLPEHYPFKSPSIGFMNKMYH  117 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~  117 (126)
                      |.+     +-++|+      ++.|+|.++|++||      .++++.|.+
T Consensus        80 Fkt-----ntRLCLSiSDfHPdsWNP~WsVStIL------tGLlSFM~e  117 (244)
T KOG0894|consen   80 FKT-----NTRLCLSISDFHPDSWNPGWSVSTIL------TGLLSFMTE  117 (244)
T ss_pred             eec-----CceEEEeccccCcCcCCCcccHHHHH------HHHHHHHhc
Confidence            443     468999      89999999999997      888887754

>KOG0416|consensus

Probab=99.94  E-value=4.2e-28  Score=167.48  Aligned_cols=109  Identities=51%  Similarity=0.956  Sum_probs=95.2

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc-cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA   84 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g   84 (126)
                      .+.||+..|+..|.....+-... +++.+++|.+.||++|||+||+|++++.+|++||++.|.|.|.++||||||+..+|
T Consensus         3 ~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG   82 (189)
T KOG0416|consen    3 SGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG   82 (189)
T ss_pred             CcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence            46899999999998765554444 55999999999999999999999999999999999999999999999999999999


Q ss_pred             eeee---CceeeEEEEeCCCCCCCCCeeeeec-cCCCCCC
Q psy11956         85 VFYY---GGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNI  120 (126)
Q Consensus        85 ~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~-~l~~pn~  120 (126)
                      .||+   ...|+|.+.+..||      -.|+. +|-.||.
T Consensus        83 sVCLDViNQtWSp~yDL~NIf------etfLPQLL~YPNp  116 (189)
T KOG0416|consen   83 SVCLDVINQTWSPLYDLVNIF------ETFLPQLLRYPNP  116 (189)
T ss_pred             ccHHHHHhhhhhHHHHHHHHH------HHHhHHHhcCCCC
Confidence            9999   78999999999887      44444 4557774

>KOG0427|consensus

Probab=99.93  E-value=4.3e-27  Score=156.45  Aligned_cols=105  Identities=18%  Similarity=0.428  Sum_probs=98.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc---cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec-cccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL---KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~   80 (126)
                      ..|.+||++|+.++|.+++.|+..   +|+..|++.+.|.+||.|+|..|++.++||+.||++.|+|.|..++ .||+|+
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY   93 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY   93 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence            468899999999999999999875   8999999999999999999999999999999999999999999987 899999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMY  116 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~  116 (126)
                       .+|-||+   -+.|+|++++.++.      ++++++|.
T Consensus        94 -SNGHICL~iL~d~WsPAmsv~SvC------lSIlSMLS  125 (161)
T KOG0427|consen   94 -SNGHICLDILYDSWSPAMSVQSVC------LSILSMLS  125 (161)
T ss_pred             -cCCeEEEEeecccCCcchhhHHHH------HHHHHHHc
Confidence             4999999   79999999999994      88888774

>KOG0420|consensus

Probab=99.91  E-value=1.1e-25  Score=155.68  Aligned_cols=111  Identities=25%  Similarity=0.506  Sum_probs=94.7

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----cCcc--cEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLK--EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP   77 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp   77 (126)
                      .|+|+.||++|+.++.--+...+..    ++.+  +++++|. |+++.|+||.|.|.+.+|+.||++||+|+|.|++|||
T Consensus        26 ~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HP  104 (184)
T KOG0420|consen   26 VSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHP  104 (184)
T ss_pred             ccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccC
Confidence            3789999999999885432222221    3444  5999999 9999999999999999999999999999999999999


Q ss_pred             ccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         78 NIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        78 nv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      ||+. +|.||+   .++|+|+.++.+|+      .+++.++.+||.++
T Consensus       105 NId~-~GnVCLnILRedW~P~lnL~sIi------~GL~~LF~epn~eD  145 (184)
T KOG0420|consen  105 NIDL-DGNVCLNILREDWRPVLNLNSII------YGLQFLFLEPNPED  145 (184)
T ss_pred             CcCC-cchHHHHHHHhcCccccchHHHH------HHHHHHhccCCCcc
Confidence            9995 999999   78899999999996      88888888888765

>KOG0423|consensus

Probab=99.91  E-value=1.1e-25  Score=155.97  Aligned_cols=112  Identities=19%  Similarity=0.441  Sum_probs=104.8

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      --..+.|.+|+++|..++++|+.+    +|+.+..+.|-||.||||++|.|+..+.+..+||.+||+-+|.|+||||||-
T Consensus         9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa   88 (223)
T KOG0423|consen    9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA   88 (223)
T ss_pred             hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence            456789999999999999999976    7888999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       .+|.||.   ..+|+|.+.++.+|      ..+.+++.|||+++.
T Consensus        89 -aNGEICVNtLKkDW~p~LGirHvL------ltikCLLI~PnPESA  127 (223)
T KOG0423|consen   89 -ANGEICVNTLKKDWNPSLGIRHVL------LTIKCLLIEPNPESA  127 (223)
T ss_pred             -cCceehhhhhhcccCcccchhhHh------hhhheeeecCChHHH
Confidence             5999999   79999999999998      999999999998763

>KOG0428|consensus

Probab=99.84  E-value=9.4e-22  Score=143.19  Aligned_cols=102  Identities=23%  Similarity=0.408  Sum_probs=86.1

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      .+++.|||++|.++|+ ++.+..-+    +|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+.+.|+--..- 
T Consensus         9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE-   86 (314)
T KOG0428|consen    9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE-   86 (314)
T ss_pred             cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee-
Confidence            4789999999999999 45444433    89999999999999999999999999999999999999999999532222 


Q ss_pred             ccccceeee------CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956         80 DEVSAVFYY------GGVWKVRVHLPEHYPFKSPSIGFMNKM  115 (126)
Q Consensus        80 ~~~~g~ic~------~~~w~p~~~~~~ilp~~~p~~~~~~~l  115 (126)
                        -+-+||+      ++.|.|++++++.|      ++++..|
T Consensus        87 --~nkKiCLSISgyHPEtWqPSWSiRTAL------lAlIgFm  120 (314)
T KOG0428|consen   87 --VNKKICLSISGYHPETWQPSWSIRTAL------LALIGFM  120 (314)
T ss_pred             --eCceEEEEecCCCccccCcchhHHHHH------HHHHccc
Confidence              3468999      79999999999886      6666554

>KOG0895|consensus

Probab=99.48  E-value=7.8e-15  Score=123.96  Aligned_cols=106  Identities=16%  Similarity=0.332  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee--ccccccccc
Q psy11956          9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK--MYHPNIDEV   82 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~--i~Hpnv~~~   82 (126)
                      +..+.|++-|..+...++.+    +.+....+.|.|+.+|||++|.|.|+|.||++||.+||.+...+.  .+.||+|. 
T Consensus       854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-  932 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-  932 (1101)
T ss_pred             HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-
Confidence            44455666667777777776    566667889999999999999999999999999999999999984  58999995 


Q ss_pred             cceeee----------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956         83 SAVFYY----------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID  121 (126)
Q Consensus        83 ~g~ic~----------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~  121 (126)
                      +|++|+          .+.|+|+-++-.+|      +++++++..-.+|
T Consensus       933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l------~s~q~l~l~~~py  975 (1101)
T KOG0895|consen  933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVL------VSIQGLVLNEEPY  975 (1101)
T ss_pred             ccceehhhhccccCCCccccCcchhHHHHH------HHhhhhhcccccc
Confidence            999999          57999999999997      9999988755444

>KOG0429|consensus

Probab=99.35  E-value=2.7e-12  Score=92.60  Aligned_cols=79  Identities=20%  Similarity=0.378  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCC--CCCceeEeeeccccccccc
Q psy11956          9 RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF--KSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~--~pP~v~f~t~i~Hpnv~~~   82 (126)
                      ..|+.|+..+.+.+.+|+++    .|-+.|..+|++ ..+.|.||+|+|.|.+|.+||.  +-|+|.|.+.++||+|...
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~  100 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK  100 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence            35677888888889999987    688899999995 5567999999999999999995  4599999999999999999


Q ss_pred             cceeee
Q psy11956         83 SAVFYY   88 (126)
Q Consensus        83 ~g~ic~   88 (126)
                      ++.+|+
T Consensus       101 skeLdl  106 (258)
T KOG0429|consen  101 SKELDL  106 (258)
T ss_pred             ccceeH
Confidence            999999

>KOG0895|consensus

Probab=99.33  E-value=2.7e-12  Score=108.84  Aligned_cols=107  Identities=17%  Similarity=0.380  Sum_probs=95.8

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee---cccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK---MYHP   77 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~---i~Hp   77 (126)
                      .-..+|+++|++.+.++.++++..    ..+...++.|.|+.+|||++|.|.|+|.+|..||..||.+.+.+.   .+.|
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP  360 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP  360 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence            346789999999999999999876    678889999999999999999999999999999999999999986   6899


Q ss_pred             ccccccceeee-------C---ceeeEE-EEeCCCCCCCCCeeeeeccCCCC
Q psy11956         78 NIDEVSAVFYY-------G---GVWKVR-VHLPEHYPFKSPSIGFMNKMYHP  118 (126)
Q Consensus        78 nv~~~~g~ic~-------~---~~w~p~-~~~~~ilp~~~p~~~~~~~l~~p  118 (126)
                      |.|. +|+||+       +   +.|+|. .++.++|      +.++.++.+.
T Consensus       361 NlYn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL------~sIQ~Li~~e  405 (1101)
T KOG0895|consen  361 NLYN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVL------ESIQGLILNE  405 (1101)
T ss_pred             Cccc-CceEEeeeeeecccccccCCCccccchhhhh------hhhhhhhccc
Confidence            9995 999999       3   789998 8888887      8888887755

>KOG0896|consensus

Probab=99.23  E-value=1e-11  Score=83.30  Aligned_cols=98  Identities=16%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc------cCc--ccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL------KGL--KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~------~~~--~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      .++.-||.+|+.+-++...++...      +|+  ..|...|.||..|+||+.+|.+.|.+..+||..||+|+|.+++--
T Consensus         4 vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm   83 (138)
T KOG0896|consen    4 VPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM   83 (138)
T ss_pred             cccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence            578889999998887765555432      344  369999999999999999999999999999999999999999988


Q ss_pred             cccccccceeee-----CceeeEEEEeCCCC
Q psy11956         77 PNIDEVSAVFYY-----GGVWKVRVHLPEHY  102 (126)
Q Consensus        77 pnv~~~~g~ic~-----~~~w~p~~~~~~il  102 (126)
                      ..|...+|.+.-     -..|+=.+++..++
T Consensus        84 ~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl  114 (138)
T KOG0896|consen   84 NGVNSSNGVVDPRDITVLARWQRSYSIKMVL  114 (138)
T ss_pred             cccccCCCccCccccchhhcccccchhhHHH
Confidence            887766666654     57899888888875

>KOG0417|consensus

Probab=98.85  E-value=3.3e-09  Score=72.62  Aligned_cols=51  Identities=43%  Similarity=0.916  Sum_probs=45.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||--|.|+.|+++.||.|...+.+.+.||++||.|.|.++|||||+++ +|+
T Consensus        33 w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-~G~   83 (148)
T KOG0417|consen   33 WQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-NGR   83 (148)
T ss_pred             EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-ccc
Confidence            555667788899999999999999999999999999999999999995 663

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.7e-09  Score=73.41  Aligned_cols=51  Identities=39%  Similarity=0.883  Sum_probs=45.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.++.+.|+.|+..+.+.+.||++||.+.|++.||||||| .||+
T Consensus        38 w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~-~~G~   88 (153)
T COG5078          38 WEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD-PSGN   88 (153)
T ss_pred             EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-CCCC
Confidence            44555667788888999999999999999999999999999999999 5884

>KOG0416|consensus

Probab=98.75  E-value=7.8e-09  Score=72.11  Aligned_cols=46  Identities=67%  Similarity=1.224  Sum_probs=41.9

Q ss_pred             cccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         81 EVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        81 ~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ++.++.+.+|.|+-...+.+.||++.|.|+|+++|||||||..||.
T Consensus        38 GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGs   83 (189)
T KOG0416|consen   38 GPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGS   83 (189)
T ss_pred             CCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCc
Confidence            4566677789999999999999999999999999999999999983

>KOG0419|consensus

Probab=98.52  E-value=1.5e-07  Score=63.29  Aligned_cols=51  Identities=31%  Similarity=0.651  Sum_probs=42.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |.--|.|+.++.+.++.|+.++.+.+.||.+||.+.|++.|||||||.+ |.
T Consensus        36 W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~-G~   86 (152)
T KOG0419|consen   36 WNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD-GS   86 (152)
T ss_pred             eeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC-Cc
Confidence            3334445566777789999999999999999999999999999999985 63

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=98.49  E-value=1.3e-07  Score=65.42  Aligned_cols=50  Identities=40%  Similarity=0.813  Sum_probs=45.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||++ +|
T Consensus        33 w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~G   82 (147)
T PLN00172         33 WTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-NG   82 (147)
T ss_pred             EEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-CC
Confidence            666777778888889999999999999999999999999999999997 67

>KOG0420|consensus

Probab=98.45  E-value=4.2e-07  Score=63.62  Aligned_cols=42  Identities=36%  Similarity=0.883  Sum_probs=37.9

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      +-.++.++.|...+.+...||++||.+.+++++||||||. .|
T Consensus        69 dEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~G  110 (184)
T KOG0420|consen   69 DEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DG  110 (184)
T ss_pred             CcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cc
Confidence            4556668999999999999999999999999999999998 44

>KOG0424|consensus

Probab=98.44  E-value=2.3e-07  Score=63.16  Aligned_cols=53  Identities=28%  Similarity=0.597  Sum_probs=49.4

Q ss_pred             eccccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         73 KMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        73 ~i~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      -.|++.|-++.|+.+.|+-+...+.+.+.||+.||.+.|-..+||||||. ||.
T Consensus        39 ~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgt   91 (158)
T KOG0424|consen   39 MNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGT   91 (158)
T ss_pred             EEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCc
Confidence            35899999999999999999999999999999999999999999999998 663

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=98.42  E-value=2.6e-07  Score=64.27  Aligned_cols=51  Identities=37%  Similarity=0.843  Sum_probs=44.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||++ +|.
T Consensus        34 w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-~G~   84 (152)
T PTZ00390         34 FKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGR   84 (152)
T ss_pred             EEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-CCe
Confidence            445555667888889999999999999999999999999999999997 673

>KOG0418|consensus

Probab=98.39  E-value=3.8e-07  Score=64.68  Aligned_cols=48  Identities=38%  Similarity=0.884  Sum_probs=43.1

Q ss_pred             cccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         79 IDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        79 v~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |-|+.|+.+.||.|.-.+++.+-||++||.+.|.++++||||.+++|.
T Consensus        42 I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGa   89 (200)
T KOG0418|consen   42 IAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGA   89 (200)
T ss_pred             ecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccccc
Confidence            444567777799999999999999999999999999999999999994

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=98.32  E-value=5.1e-07  Score=61.55  Aligned_cols=51  Identities=37%  Similarity=0.851  Sum_probs=40.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+..-||++||.+.|.+.++||||+ .+|.
T Consensus        30 w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G~   80 (140)
T PF00179_consen   30 WHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENGR   80 (140)
T ss_dssp             EEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTSB
T ss_pred             EEEEEeccCccceeccccccccccccccccccccccccccccccccc-cccc
Confidence            56666666778888999999999999999999999999999999999 4773

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0425|consensus

Probab=98.30  E-value=8.6e-07  Score=61.24  Aligned_cols=43  Identities=37%  Similarity=0.886  Sum_probs=38.9

Q ss_pred             ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      +..+++.||-++..+++...||..||.+.|.++|+|||||+ +|
T Consensus        45 ppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G   87 (171)
T KOG0425|consen   45 PPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DG   87 (171)
T ss_pred             CCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CC
Confidence            34567779999999999999999999999999999999998 55

>KOG0422|consensus

Probab=98.12  E-value=3.7e-06  Score=57.10  Aligned_cols=43  Identities=42%  Similarity=0.916  Sum_probs=37.3

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ++-.+-.+.|+-.+++.-.||++||.+.|.++|||||||+. |+
T Consensus        42 d~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~-gq   84 (153)
T KOG0422|consen   42 DKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEK-GQ   84 (153)
T ss_pred             CCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCC-Cc
Confidence            44444478899999999999999999999999999999995 63

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=98.08  E-value=3.9e-06  Score=57.53  Aligned_cols=51  Identities=41%  Similarity=0.902  Sum_probs=44.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..+.++.+..+.++.+...+.+.+.||++||.+.|.+.++||||+. +|.
T Consensus        31 w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~G~   81 (145)
T smart00212       31 WTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-SGE   81 (145)
T ss_pred             EEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-CCC
Confidence            556666567777778899999999999999999999999999999997 884

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=98.03  E-value=9e-06  Score=55.49  Aligned_cols=51  Identities=41%  Similarity=0.938  Sum_probs=42.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+..+.++.++++.++.+...+.+...||++||.+.|.+.++||||+ .+|.
T Consensus        31 w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G~   81 (141)
T cd00195          31 WHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENGK   81 (141)
T ss_pred             EEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCCC
Confidence            44444544466666888999999999999999999999999999999 4774

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.89  E-value=8.5e-06  Score=55.57  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc--cCcccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCceeEee
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL--KGLKEFCVKFFGPRDTPYEGGV----------WKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~--~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      ....+||..||+.|.+    ++..  ++-.+|.-.=.-++||-|.|.+          |.+++++|..||..||.+....
T Consensus        23 ~~W~~RLKEEy~aLI~----Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPe   98 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIK----YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPE   98 (161)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GG
T ss_pred             HHHHHHHHHHHHHHHH----HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccc
Confidence            3567899999999865    2221  4555676555668888888765          5566778999999999998752


Q ss_pred             ------eccccccccccceeeeCceeeE
Q psy11956         73 ------KMYHPNIDEVSAVFYYGGVWKV   94 (126)
Q Consensus        73 ------~i~Hpnv~~~~g~ic~~~~w~p   94 (126)
                            ++|.      .|+||+...|+|
T Consensus        99 LdGKTaKMYR------GGkIClt~HFkP  120 (161)
T PF08694_consen   99 LDGKTAKMYR------GGKICLTDHFKP  120 (161)
T ss_dssp             GTTT-SSBCC------CCBB---TTHHH
T ss_pred             cCCchhhhhc------CceEeeecccch
Confidence                  4444      799999555444

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG0421|consensus

Probab=97.88  E-value=2.3e-05  Score=53.61  Aligned_cols=45  Identities=31%  Similarity=0.749  Sum_probs=40.0

Q ss_pred             ccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         78 NIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        78 nv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      -|.++.++++.+-.++.++++..-||++||.+.|++.++|||||-
T Consensus        64 tItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~  108 (175)
T KOG0421|consen   64 TITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL  108 (175)
T ss_pred             EeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence            344556777778899999999999999999999999999999997

>KOG0426|consensus

Probab=97.82  E-value=2.3e-05  Score=52.84  Aligned_cols=50  Identities=32%  Similarity=0.686  Sum_probs=42.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      |.+-|-++.|+-..++.|...+++...||..||.+.|...|+|||++. +|
T Consensus        37 W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~-dG   86 (165)
T KOG0426|consen   37 WECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYP-DG   86 (165)
T ss_pred             eeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccC-CC
Confidence            456666666665558899999999999999999999999999999998 55

>KOG0897|consensus

Probab=97.54  E-value=5.7e-06  Score=54.34  Aligned_cols=59  Identities=7%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             EEEEEEcCCCCCCCCCceeEeeeccccccccccceeee----CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956         51 WKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKM  115 (126)
Q Consensus        51 f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l  115 (126)
                      ..+.+.|+.+||+.||.++-..++..-.-.-.+|.||+    ..+|+.+++++.++      +++.+.+
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi------~qiaatl   75 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVI------MQIAATL   75 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHH------HHHHHHh
Confidence            34567899999999999998886543322223899999    79999999999986      6666544

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.44  E-value=0.00022  Score=48.36  Aligned_cols=53  Identities=15%  Similarity=0.483  Sum_probs=43.2

Q ss_pred             CCCEEEEEEEcCCCCCCCCCceeEeeec---cccccccccceeee------CceeeEEEEeCC
Q psy11956         47 EGGVWKVRVHLPEHYPFKSPSIGFMNKM---YHPNIDEVSAVFYY------GGVWKVRVHLPE  100 (126)
Q Consensus        47 ~gg~f~~~i~~p~~yP~~pP~v~f~t~i---~Hpnv~~~~g~ic~------~~~w~p~~~~~~  100 (126)
                      .|+.+.+.|.+|++||..||.|....+.   +-|||+. +|.+|+      .+.|.|.-.+.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~   95 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIAD   95 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHH
Confidence            6899999999999999999999999754   6889996 999999      345555544433

>KOG3357|consensus

Probab=97.35  E-value=0.00034  Score=47.18  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=56.6

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCceeEee---
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGV----------WKVRVHLPEHYPFKSPSIGFMN---   72 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t---   72 (126)
                      ...+||..||+.|.......  .++-..|.-.-..++||-|-|.+          |.+++++|-.||-.+|.+....   
T Consensus        27 ~wvqrlkeey~sli~yvqnn--k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldg  104 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYVQNN--KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDG  104 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHhC--cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCc
Confidence            45789999999985421111  13445676555668899888865          4556677999999999987642   


Q ss_pred             ---eccccccccccceeeeCceeeEEE
Q psy11956         73 ---KMYHPNIDEVSAVFYYGGVWKVRV   96 (126)
Q Consensus        73 ---~i~Hpnv~~~~g~ic~~~~w~p~~   96 (126)
                         ++|.      .|+||+.+.++|-+
T Consensus       105 ktakmyr------ggkiclt~hfkplw  125 (167)
T KOG3357|consen  105 KTAKMYR------GGKICLTDHFKPLW  125 (167)
T ss_pred             hhhhhhc------CceEeeccccchhh
Confidence               2232      79999977666643

>KOG0423|consensus

Probab=97.20  E-value=0.00027  Score=49.78  Aligned_cols=48  Identities=27%  Similarity=0.686  Sum_probs=42.8

Q ss_pred             ccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         78 NIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        78 nv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .|+++.|+.+.++-|...+.+...||+.||.-.|+++||||||-. +|+
T Consensus        45 ~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa-NGE   92 (223)
T KOG0423|consen   45 DIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA-NGE   92 (223)
T ss_pred             hccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc-Cce
Confidence            466678888889999999999999999999999999999999987 453

>KOG0427|consensus

Probab=97.13  E-value=0.001  Score=44.96  Aligned_cols=49  Identities=27%  Similarity=0.606  Sum_probs=43.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCC-CCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY-HPNIDEV  123 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~-~pn~~~~  123 (126)
                      |--.|.+..|+++.++.+.....+.+-||++.|.+.|+..+- ||++|+|
T Consensus        46 Wii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSN   95 (161)
T KOG0427|consen   46 WIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSN   95 (161)
T ss_pred             eEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecC
Confidence            445666789999999999999999999999999999999865 9999984

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.47  E-value=0.019  Score=36.90  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhcCCCcc-cc--cCcccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956          9 RRMNIDVIKLIESKHEGT-TL--KGLKEFCVKFFG--PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~-~~--~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      .+.+.|+..|+.--.... ..  .+...+.+.+..  ...+.-....+++.+.||++||..+|.+.+....
T Consensus         4 e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            456678888877554444 22  333345555521  2333344567999999999999999999988753

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=96.46  E-value=0.00076  Score=45.17  Aligned_cols=66  Identities=20%  Similarity=0.471  Sum_probs=39.6

Q ss_pred             ccEEEEEECCCCCCCCCCEEEE--EEEcCCCCCCCCCceeEeeec-----cccccccccceeee--CceeeE-EEEe
Q psy11956         32 KEFCVKFFGPRDTPYEGGVWKV--RVHLPEHYPFKSPSIGFMNKM-----YHPNIDEVSAVFYY--GGVWKV-RVHL   98 (126)
Q Consensus        32 ~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~yP~~pP~v~f~t~i-----~Hpnv~~~~g~ic~--~~~w~p-~~~~   98 (126)
                      .+-.+.+.|--.-.|+|..|.+  .|-+|++||.+||.+......     -+.+|+ .+|++++  -..|+. ..++
T Consensus        29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~~W~~~~s~L  104 (121)
T PF05743_consen   29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQNWNPPSSNL  104 (121)
T ss_dssp             EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHHT--TTTS-H
T ss_pred             hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhccCCCCCCCH
Confidence            3444445553334588888865  566899999999999887421     233999 4999998  578887 3443

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.60  E-value=0.23  Score=31.49  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=22.4

Q ss_pred             CCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956         48 GGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus        48 gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      .-.+.+.+.+|++||..+|.+.+.+.
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            45588999999999999999998764

>KOG0896|consensus

Probab=91.19  E-value=0.45  Score=32.38  Aligned_cols=44  Identities=16%  Similarity=0.424  Sum_probs=37.6

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .-++.....++..+.+..-||-.||.+.|.+++..+.+++.+|+
T Consensus        49 prT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~   92 (138)
T KOG0896|consen   49 PRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGV   92 (138)
T ss_pred             CCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCc
Confidence            33444466788999999999999999999999999999998884

>KOG2391|consensus

Probab=88.66  E-value=0.36  Score=37.70  Aligned_cols=61  Identities=23%  Similarity=0.438  Sum_probs=43.2

Q ss_pred             EECCCCCCCCCCEEEEEE--EcCCCCCCCCCceeEeee---c--cccccccccceeee--CceeeE-EEEeC
Q psy11956         38 FFGPRDTPYEGGVWKVRV--HLPEHYPFKSPSIGFMNK---M--YHPNIDEVSAVFYY--GGVWKV-RVHLP   99 (126)
Q Consensus        38 i~gp~~t~y~gg~f~~~i--~~p~~yP~~pP~v~f~t~---i--~Hpnv~~~~g~ic~--~~~w~p-~~~~~   99 (126)
                      +.|---.+|.|..|-+-|  =+.+.||..||.+.....   +  -|-+|+ ++|.|.|  -..|.+ +.++.
T Consensus        55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh~W~~pssdLv  125 (365)
T KOG2391|consen   55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLHNWDPPSSDLV  125 (365)
T ss_pred             ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhccCCCccchHH
Confidence            444444578888877654  579999999999876621   1  388999 5999999  577854 44443

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=88.16  E-value=3.5  Score=27.65  Aligned_cols=44  Identities=14%  Similarity=0.298  Sum_probs=34.1

Q ss_pred             cCcccEEEEEEC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956         29 KGLKEFCVKFFG--PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus        29 ~~~~~w~~~i~g--p~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      +.-..|.+ |.|  .+.+.|.+..-.+-|.+|+.||..+|.+.+..+
T Consensus        21 eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P   66 (122)
T PF14462_consen   21 EGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP   66 (122)
T ss_pred             eCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence            44445655 655  555669999999999999999999998877764

>KOG0894|consensus

Probab=86.53  E-value=0.91  Score=33.40  Aligned_cols=39  Identities=31%  Similarity=0.717  Sum_probs=35.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeec
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMN  113 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~  113 (126)
                      ||--|.++.++.+.||.+.=++.+...||++||.|.+++
T Consensus        37 WHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT   75 (244)
T KOG0894|consen   37 WHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT   75 (244)
T ss_pred             eEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence            788888888888889999999999999999999998776

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=85.04  E-value=2.3  Score=32.68  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc-cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      ..-.+|.+|+.++..+....+.. +++....+.+..      +....-++|.++.+||.++|.+...-
T Consensus        99 ~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~  160 (291)
T PF09765_consen   99 QYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDL  160 (291)
T ss_dssp             GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-T
T ss_pred             HHHHHHHHHHHHhccccceEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCC
Confidence            45678889999998877766643 677888888872      23556789999999999999865554

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG0429|consensus

Probab=83.97  E-value=3.1  Score=30.78  Aligned_cols=41  Identities=32%  Similarity=0.706  Sum_probs=34.8

Q ss_pred             eeeCceeeEEEEeCCCCC--CCCCeeeeeccCCCCCCCCCCCC
Q psy11956         86 FYYGGVWKVRVHLPEHYP--FKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        86 ic~~~~w~p~~~~~~ilp--~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ++.++.|..+.-+.+.||  .+=|.+.|...++||.|++.||+
T Consensus        61 iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ske  103 (258)
T KOG0429|consen   61 IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKE  103 (258)
T ss_pred             cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccc
Confidence            334777899999999998  46699999999999999999875

>KOG4018|consensus

Probab=81.54  E-value=8.3  Score=28.33  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHhcCCCcc-cc--cCcccEEEEEECCCCC--CCCCCEEEEEEEcCCCCCCCCCceeE
Q psy11956          9 RRMNIDVIKLIESKHEGT-TL--KGLKEFCVKFFGPRDT--PYEGGVWKVRVHLPEHYPFKSPSIGF   70 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~-~~--~~~~~w~~~i~gp~~t--~y~gg~f~~~i~~p~~yP~~pP~v~f   70 (126)
                      .-..+|+..|........ ..  .+...+.+.|.--.+.  -|.| .+.+.+.++++||.++|-+.+
T Consensus         5 EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~   70 (215)
T KOG4018|consen    5 EEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA   70 (215)
T ss_pred             HHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence            344567777766544333 22  4444477777632221  1323 788899999999999999933

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		5e-33
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		6e-17
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		6e-17
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-12
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		4e-11
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-06
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		4e-11
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		1e-06
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		4e-11
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-06
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		4e-11
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-06
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		4e-11
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-06
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-11
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		6e-06
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-10
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-06
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-10
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-06
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		2e-10
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		6e-06
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		2e-10
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-06
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-10
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		6e-06
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		7e-10
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		5e-06
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-10
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-06
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-09
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-06
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		1e-09
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-06
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		1e-09
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-06
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-09
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-06
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-09
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-06
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		1e-09
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		4e-05
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-09
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-06
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-09
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		6e-06
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-09
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		6e-06
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-09
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		6e-06
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		2e-09
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-06
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-09
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		6e-06
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		2e-09
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		6e-06
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-09
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		6e-06
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-09
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-06
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-09
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		6e-06
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-09
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		6e-06
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-09
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-06
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-09
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		6e-06
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-09
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		7e-06
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-09
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		6e-06
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-09
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-06
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-09
3jvz_A	146	E2~ubiquitin-Hect Length = 146		7e-06
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-09
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-06
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-09
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-06
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-09
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		9e-06
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		4e-09
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		3e-06
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-09
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-06
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		7e-09
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-06
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		8e-09
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-06
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		8e-09
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-06
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		9e-09
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-05
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		9e-09
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		9e-09
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-08
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		2e-05
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-08
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		7e-06
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-08
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-05
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-08
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		7e-04
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		4e-08
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-06
1jas_A	152	Hsubc2b Length = 152		4e-08
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-08
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-06
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		5e-08
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		7e-05
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		5e-08
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		8e-05
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		9e-08
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-07
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-04
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		9e-07
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		5e-04
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-06
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		8e-04
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		2e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		3e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		2e-05
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		4e-06
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		2e-05
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		1e-05
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		2e-05
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		6e-05
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-04
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-04
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		2e-04
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-04
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-04
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-04
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		3e-04
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		3e-04
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		3e-04
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		3e-04
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		8e-04

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 70/85 (82%)
Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
           MSS S G RRM+ DVIKLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 61  YPFKSPSIGFMNKMYHPNIDEVSAV 85
           YPFKSPSIGFMNK++HPNIDE S  
Sbjct: 80  YPFKSPSIGFMNKIFHPNIDEASGT 104

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 7  GNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSP 66
           NRR  +D ++L  S  +      + EF V+F GP  TPYE G W + V LP  YPFKSP
Sbjct: 13 SNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 67 SIGFMNKMYHPNIDEVSA 84
          SIGF N++ HPN+DE S 
Sbjct: 73 SIGFCNRILHPNVDERSG 90

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 10  RMNIDVIKLIESKHEGTTLKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSI 68
           R   D  KLI + ++     G  ++F V F GP  T YEGG+WKV V LP+ YPF SPSI
Sbjct: 6   RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 69  GFMNKMYHPNIDEVSAVF-----------YYGGVWKVRVHLPEHYPFKSPS 108
           GFMNK+ HPN+DE S               Y  V    V LP+   + +PS
Sbjct: 66  GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPS 116

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG+WKV V LP+ YPF SPSIGFMNK+ HPN+DE SG
Sbjct: 43  YEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          F V   GP+D+P+EGG +K+ + LPE YP  +P + FM K+YHPN+D++  +
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 88

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           + GG +K+ + LPE YP  +P + FM K+YHPN+D++
Sbjct: 49  FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          F V   GP+D+P+EGG +K+ + LPE YP  +P + FM K+YHPN+D++  +
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 86

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           + GG +K+ + LPE YP  +P + FM K+YHPN+D++
Sbjct: 47  FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 83

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          F V   GP+D+P+EGG +K+ + LPE YP  +P + FM K+YHPN+D++  +
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 89

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           + GG +K+ + LPE YP  +P + FM K+YHPN+D++
Sbjct: 50  FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 86

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          F V   GP+D+P+EGG +K+ + LPE YP  +P + FM K+YHPN+D++  +
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 91

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           + GG +K+ + LPE YP  +P + FM K+YHPN+D++
Sbjct: 52  FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 88

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 34 FCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          F V   GP+D+P+EGG +K+ + LPE YP  +P + FM K+YHPN+D++  +
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 84

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           + GG +K+ + LPE YP  +P + FM K+YHPN+D++
Sbjct: 45  FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 81

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 3  SASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
          SA++  +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP
Sbjct: 2  SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 59 EHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          + YP ++P + F+ K+YHPNID +  +
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRI 88

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y  G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 49  YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 85

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 41 GPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 32 KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          + F +   GP  TPYEGG +K+ + LPE YP + P + F+ K+YHPNID++  +
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y GG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 45  YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP+ YP +
Sbjct: 6  KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
          +P + F+ K+YHPNID +  +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRI 86

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y  G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 47  YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 83

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 32 KEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          + F +   GP  TPYEGG +K+ + LPE YP + P + F+ K+YHPNID++  +
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRI 84

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y GG +K+ + LPE YP + P + F+ K+YHPNID++
Sbjct: 45  YEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP+ YP +
Sbjct: 6  KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
          +P + F+ K+YHPNID +  +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRI 86

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y  G++++ ++LP+ YP ++P + F+ K+YHPNID +
Sbjct: 47  YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 83

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36  VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
               GP D+PY GGV+ + +H P  YPFK P + F  K+YHPNI+   A+
Sbjct: 55  ATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GGV+ + +H P  YPFK P + F  K+YHPNI+
Sbjct: 65  YSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          GP D+PY+GG++ + VH P  YPFK+P + FM K+YHPNI++
Sbjct: 42 GPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GG++ + VH P  YPFK+P + FM K+YHPNI++
Sbjct: 48  YQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK 83

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  K+YHPNI+   ++
Sbjct: 40 ATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  K+YHPNI+ 
Sbjct: 50  YQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS 85

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 37 KFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
          +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+   
Sbjct: 44 EIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G
Sbjct: 53  YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 91

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 33  EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
           E   +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+   
Sbjct: 55  ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G
Sbjct: 68  YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 33  EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
           E   +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+   
Sbjct: 91  ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G
Sbjct: 104 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 37 KFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
          +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+   
Sbjct: 43 EIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G
Sbjct: 52  YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP+ YP +
Sbjct: 6  KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
          +P + F+ K+YHP ID +  +
Sbjct: 66 APKVRFLTKIYHPAIDRLGRI 86

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
           Y  G++++ ++LP+ YP ++P + F+ K+YHP ID +
Sbjct: 47  YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRL 83

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 29 KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
          +   E   +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+   
Sbjct: 38 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G
Sbjct: 55  YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 45 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 55  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 90

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 45 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 55  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 90

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
              GP D+PY GGV+ + +H P  YPFK P I F  K+YHPNI+
Sbjct: 36 ASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNIN 80

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GGV+ + +H P  YPFK P I F  K+YHPNI+
Sbjct: 46  YAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNIN 80

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 45  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 38 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 48  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 83

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 40 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 50  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 85

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 34 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 44  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 79

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 43 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 53  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 88

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 37 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 45  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36  VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
               GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 53  ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 63  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 34 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 44  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 79

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36  VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
               GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 53  ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 63  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 98

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 39 FGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
           GP D+PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 40 MGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 47  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 9  RRMNIDVIKL----IESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+N ++  L      S   G     L  +     GP D+PY GGV+ + +H P  YPFK
Sbjct: 4  KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 65 SPSIGFMNKMYHPNIDEVSAV 85
           P + F  ++YHPNI+   ++
Sbjct: 64 PPKVNFTTRIYHPNINSNGSI 84

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+ 
Sbjct: 45  YAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS 80

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          + +   +  G  +TPYE GV+K+ V +PE YPF+ P I F+  +YHPNID    +
Sbjct: 33 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRI 87

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y  GV+K+ V +PE YPF+ P I F+  +YHPNID
Sbjct: 48  YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+ Y+GGV+ + VH P  YPFK P I F  K+YHPNI+   ++
Sbjct: 41 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + VH P  YPFK P I F  K+YHPNI+ 
Sbjct: 51  YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 86

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+ Y+GGV+ + VH P  YPFK P I F  K+YHPNI+   ++
Sbjct: 37 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + VH P  YPFK P I F  K+YHPNI+ 
Sbjct: 47  YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 82

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+ Y+GGV+ + VH P  YPFK P I F  K+YHPNI+   ++
Sbjct: 41 ATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + VH P  YPFK P I F  K+YHPNI+ 
Sbjct: 51  YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 86

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 38  FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
             GP D+ Y+GGV+ + VH P  YPFK P I F  K+YHPNI+   ++
Sbjct: 55  IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + VH P  YPFK P I F  K+YHPNI+ 
Sbjct: 63  YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS 98

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
          F GP  TPYEGG + V + +P  YPFK P + F  K+YHPNI  V+   
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG + V + +P  YPFK P + F  K+YHPNI  V+G
Sbjct: 47  YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG 85

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4  ASAGNRRMNIDVIKLIESKHEGT----TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
           +   RR+  D  KL E    G     T   +  +    FGP++TP+E G +K+ +   E
Sbjct: 2  TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
           YP K P++ F++KM+HPN+
Sbjct: 62 EYPNKPPTVKFISKMFHPNV 81

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4  ASAGNRRMNIDVIKLIESKHEGT----TLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
           +   RR+  D  KL E    G     T   +  +    FGP++TP+E G +K+ +   E
Sbjct: 5  TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 64
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
           YP K P++ F++KM+HPN+
Sbjct: 65 EYPNKPPTVKFISKMFHPNV 84

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
          F GP  TPYEGG + V + +P  YPFK P + F  K+YHPNI  V+   
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 86

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG + V + +P  YPFK P + F  K+YHPNI  V+G
Sbjct: 46  YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG 84

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP ++PY+GGV+ + +H P  YPFK P + F  ++YHPNI+   ++
Sbjct: 38 ATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GGV+ + +H P  YPFK P + F  ++YHPNI+
Sbjct: 48  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
              GP D+PY+GGV+ + +H P  YPFK P + F  ++YHP I+   ++
Sbjct: 35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+ + +H P  YPFK P + F  ++YHP I+ 
Sbjct: 45  YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS 80

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
           FGP DTP++GG +K+ +   E YP K P++ F+++M+HPNI
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
           + GG +K+ +   E YP K P++ F+++M+HPNI
Sbjct: 48  WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          P + PY+ G +++ ++ P  YPFK P I F  K+YHPNIDE   V
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 87

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y  G +++ ++ P  YPFK P I F  K+YHPNIDE
Sbjct: 48  YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 83

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 4  ASAGNRRMNIDVIKLIESKHEGTT----LKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
          ++   RR+  D  +L E    G +       + ++    FGP  TP+E G +K+ +   E
Sbjct: 2  STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
           YP K P++ F++KM+HPN+
Sbjct: 62 EYPNKPPTVRFLSKMFHPNV 81

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 41 PRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          P + PY+ G +++ ++ P  YPFK P I F  K+YHPNIDE   V
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y  G +++ ++ P  YPFK P I F  K+YHPNIDE
Sbjct: 46  YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          L  + V  FGP +T YEGG +K R+  P  YP+  P+  F+ KM+HPNI E   V
Sbjct: 34 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 88

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 85  VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
            +Y GG +K R+  P  YP+  P+  F+ KM+HPNI E 
Sbjct: 47  TYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYET 85

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          L  + V  FGP +T YEGG +K R+  P  YP+  P+  F+ KM+HPNI E   V
Sbjct: 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDV 91

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 85  VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV 123
            +Y GG +K R+  P  YP+  P+  F+ KM+HPNI E 
Sbjct: 50  TYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYET 88

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLKGLKE----FCVKFFGPRDTPYEGGVWKVRVHLPE 59
          ++   RR+  D  ++ E    G +   L +    +     GP DTPYE G +++ +   E
Sbjct: 2  STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61
Query: 60 HYPFKSPSIGFMNKMYHPNI 79
           YP K P + F+++M+HPN+
Sbjct: 62 EYPNKPPHVKFLSEMFHPNV 81

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 36  VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
           V   GP DT YEGGV+K  +  P+ YP + P + F+ +++HPN+D+   V
Sbjct: 52  VLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDV 101

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 85  VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
             Y GGV+K  +  P+ YP + P + F+ +++HPN+D+
Sbjct: 60  TLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 40  GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
           GP  TPYEGG + + + +P  YP+  P I F+ K++HPNI
Sbjct: 61  GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG 125
           Y GG + + + +P  YP+  P I F+ K++HPNI   +G
Sbjct: 67  YEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTG 105

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 36 VKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          V   GP DT YEGG +K  +  P  YP K P + F+++++HPNID+
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 83

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 85  VFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
             Y GG +K  +  P  YP K P + F+++++HPNID+
Sbjct: 46  TLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 83

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8  NRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
          ++R+  ++  L+ S   G T       L ++     GP+DT YE   +K+ +  P  YP+
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 64 KSPSIGFMNKMYHPNIDE 81
          K P + F    +HPN+D+
Sbjct: 71 KPPVVKFTTPCWHPNVDQ 88

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
             P   PY    + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 80

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y+   + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 45  YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 80

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
             P   PY    + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y+   + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 48  YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 40  GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF 86
           GP  TPYEGG + + + +P  YP+  P + F+ K++HPNI   +   
Sbjct: 83  GPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          GP DTPY  GV+  ++  P+ YP   P + F   + HPNI
Sbjct: 43 GPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          L +  V   GP  TPY GG++++++ L + +P   P   F+ K++HPN+
Sbjct: 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 9   RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
           +R+  +++ L+ S  +G +       L ++     G   T YE   +K+ +  P  YP+ 
Sbjct: 33  KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 65  SPSIGFMNKMYHPNID 80
           +P++ F+   YHPN+D
Sbjct: 93  APTVKFLTPCYHPNVD 108

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 33  EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
           E+     GP  + YEGGV+ + +     YPFK P + F  ++YH NI+
Sbjct: 79  EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
          GP DTPYE   +++ + +P  YP   P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNV 96

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          E+     GP DT +E GV+   +  P  YP   P + F  +M+HPNI
Sbjct: 35 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAV 85
          E+     GP  + YEGGV+ + +     YPFK P + F  ++YH NI+    +
Sbjct: 34 EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVI 86

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          E+     GP DT +E GV+   +  P  YP   P + F  +M+HPNI
Sbjct: 41 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          E+     GP DT +E GV+   +  P  YP   P + F  +M+HPNI
Sbjct: 39 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
          E+     GP DT +E GV+   +  P  YP   P + F  +M+HPNI
Sbjct: 38 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
          GP DTPYE   +++ + +P  YP   P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNV 96

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM-NKMYHPNI 79
          GP DTPYE   +++ + +P  YP   P I FM N + H N+
Sbjct: 56 GPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNV 96

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 14  DVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIG 69
           D   L E+ ++G T K     + E+ V+  G +++ ++G V+++ +H    Y +  P + 
Sbjct: 31  DFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
Query: 70  FMNKMYHPNID 80
           F+   +HPN+D
Sbjct: 91  FITIPFHPNVD 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	4e-35
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	6e-30
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-26
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-21
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	1e-21
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	7e-21
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-20
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	2e-20
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	3e-20
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-20
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	6e-20
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	8e-20
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-19
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	2e-19
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-19
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-19
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	3e-19
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-19
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	3e-19
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	4e-19
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	5e-19
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	7e-19
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	1e-18
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-18
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-11
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	3e-18
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-18
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	1e-11
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	5e-18
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	6e-18
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	9e-13
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	7e-18
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-11
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	9e-18
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-12
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	1e-17
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	5e-10
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-17
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	5e-11
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-17
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	4e-12
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-17
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-11
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-17
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	3e-17
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	6e-11
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	3e-17
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	3e-17
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	3e-17
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	3e-11
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	4e-17
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-10
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	5e-17
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	4e-11
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	6e-17
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	6e-17
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	5e-10
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-16
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-10
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-16
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	6e-10
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-16
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-09
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-16
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	2e-09
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	1e-14
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	2e-08
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	8e-10
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	4e-04
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-06
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-05

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  118 bits (297), Expect = 4e-35
 Identities = 64/83 (77%), Positives = 70/83 (84%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
           MSS S G RRM+ DVIKLIESKHE T L GL EF VKF+GP+ TPYEGGVWKVRV LP+ 
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79

Query: 61  YPFKSPSIGFMNKMYHPNIDEVS 83
           YPFKSPSIGFMNK++HPNIDE S
Sbjct: 80  YPFKSPSIGFMNKIFHPNIDEAS 102

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  104 bits (262), Expect = 6e-30
 Identities = 38/82 (46%), Positives = 49/82 (59%)

Query: 2  SSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHY 61
          +     NRR  +D ++L  S  +      + EF V+F GP  TPYE G W + V LP  Y
Sbjct: 8  AGNLRSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDY 67

Query: 62 PFKSPSIGFMNKMYHPNIDEVS 83
          PFKSPSIGF N++ HPN+DE S
Sbjct: 68 PFKSPSIGFCNRILHPNVDERS 89

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 9  RRMNIDVIKLIESKHEGTTLKG-LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS 67
           R   D  KLI + ++     G  ++F V F GP  T YEGG+WKV V LP+ YPF SPS
Sbjct: 5  TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPS 64

Query: 68 IGFMNKMYHPNIDEVS 83
          IGFMNK+ HPN+DE S
Sbjct: 65 IGFMNKLLHPNVDEAS 80

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 83.1 bits (206), Expect = 1e-21
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGT-----TLKG--LKEFCVKFFGPRDTPYEGGVWKV 53
          M+ A+   +R+  +  ++++S+          L      E   +  GP DTPYEGG +++
Sbjct: 3  MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62

Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
           + +PE YPF  P + F+ K++HPNI  V+
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVT 92

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 84.5 bits (209), Expect = 1e-21
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPE 59
          S+  +R+  ++  + +      TL+ + E         F GP  TPYEGG + V + +P 
Sbjct: 1  SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60

Query: 60 HYPFKSPSIGFMNKMYHPNIDEVS 83
           YPFK P + F  K+YHPNI  V+
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVT 84

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 81.2 bits (201), Expect = 7e-21
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 3  SASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
          SA++  +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP
Sbjct: 2  SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61

Query: 59 EHYPFKSPSIGFMNKMYHPNIDE 81
          + YP ++P + F+ K+YHPNID 
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDR 84

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 80.0 bits (198), Expect = 2e-20
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 2  SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
          + ++   RR+  +  +L+     G   +      + F V   GP+D+P+EGG +K+ + L
Sbjct: 1  AGSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFL 60

Query: 58 PEHYPFKSPSIGFMNKMYHPNID 80
          PE YP  +P + FM K+YHPN+D
Sbjct: 61 PEEYPMAAPKVRFMTKIYHPNVD 83

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 81.9 bits (202), Expect = 2e-20
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
             E   +  GP DTPYEGG +++ + +PE YPF  P + F+ K++HPNI  V+
Sbjct: 89  FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 141

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 80.5 bits (199), Expect = 3e-20
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 1  MSSASAGNRRMNI--DVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVR 54
          M++  A  R      +V+K  E+      +        E   +  GP DTPYEGG +++ 
Sbjct: 2  MAN-IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 60

Query: 55 VHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
          + +PE YPF  P + F+ K++HPNI  V+
Sbjct: 61 IKIPETYPFNPPKVRFITKIWHPNISSVT 89

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 78.9 bits (195), Expect = 6e-20
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
          +   S   +R++ ++  L        +       +  +     GP D+PY+GGV+ + +H
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73

Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
           P  YPFK P + F  ++YHPNI+
Sbjct: 74 FPTDYPFKPPKVAFTTRIYHPNIN 97

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 78.5 bits (194), Expect = 6e-20
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 6  AGNRRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          +  +R+  ++  + +      TL+ + E         F GP  TPYEGG + V + +P  
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 61 YPFKSPSIGFMNKMYHPNIDEVS 83
          YPFK P + F  K+YHPNI  V+
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVT 83

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 78.5 bits (194), Expect = 8e-20
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 2  SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
          +      R +  +V  L     +G  +      L +  V   GP  TPY GG++++++ L
Sbjct: 9  NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68

Query: 58 PEHYPFKSPSIGFMNKMYHPNID 80
           + +P   P   F+ K++HPN+ 
Sbjct: 69 GKDFPASPPKGYFLTKIFHPNVG 91

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 79.0 bits (195), Expect = 2e-19
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 2   SSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHL 57
              S    R+  ++  +     +            E+     GP  TPYEGG + + + +
Sbjct: 19  FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITI 78

Query: 58  PEHYPFKSPSIGFMNKMYHPNID 80
           P  YP+  P I F+ K++HPNI 
Sbjct: 79  PNDYPYNPPKIKFVTKIWHPNIS 101

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 1  MSSASAGN---RRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKV 53
          M+++   +   +R+  ++  L+ S   G T    G  L ++     GP+DT YE   +K+
Sbjct: 1  MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKL 60

Query: 54 RVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
           +  P  YP+K P + F    +HPN+D+
Sbjct: 61 TLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L  +     GP ++PY+GGV+ + +H P  YPFK P + F  ++YHPNI+
Sbjct: 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
          +    A  +R+N ++  L +      +       +  +     GP D+PY GGV+ + +H
Sbjct: 17 LYFQGA-LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIH 75

Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
           P  YPFK P + F  K+YHPNI+
Sbjct: 76 FPSDYPFKPPKVNFTTKIYHPNIN 99

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 76.9 bits (190), Expect = 3e-19
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
           + F +   GP  TPYEGG +K+ + LPE YP + P + F+ K+YHPNID
Sbjct: 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 77.9 bits (192), Expect = 3e-19
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS 83
           +  +     GP  TPYEGG + + + +P  YP+  P + F+ K++HPNI   +
Sbjct: 74  IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 126

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 77.4 bits (191), Expect = 3e-19
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
          +     R+  ++  L      G T       + +   +  G  +TPYE GV+K+ V +PE
Sbjct: 2  SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61

Query: 60 HYPFKSPSIGFMNKMYHPNIDE 81
           YPF+ P I F+  +YHPNID 
Sbjct: 62 RYPFEPPQIRFLTPIYHPNIDS 83

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 77.9 bits (192), Expect = 4e-19
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
           + S SA  +R+  ++  +        +   KG  + E+     GP  + YEGGV+ + + 
Sbjct: 45  LLSTSA--KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDIT 102

Query: 57  LPEHYPFKSPSIGFMNKMYHPNIDE 81
               YPFK P + F  ++YH NI+ 
Sbjct: 103 FTPEYPFKPPKVTFRTRIYHCNINS 127

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 77.0 bits (190), Expect = 5e-19
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 2   SSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVHL 57
           ++     +R+  +++ L+ S  +G +   +   L ++     G   T YE   +K+ +  
Sbjct: 26  AARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEF 85

Query: 58  PEHYPFKSPSIGFMNKMYHPNIDE 81
           P  YP+ +P++ F+   YHPN+D 
Sbjct: 86  PSGYPYNAPTVKFLTPCYHPNVDT 109

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 75.4 bits (186), Expect = 7e-19
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLKGLK--------EFCVKFFGPRDTPYEGGVWK 52
          MS     N R+  ++ K  +     +   GL         ++     GP  + +E  ++ 
Sbjct: 2  MSKVPR-NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYS 60

Query: 53 VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          + +    +YP   P + F++K+  P ++
Sbjct: 61 LSIDCGPNYPDSPPKVTFISKINLPCVN 88

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 75.9 bits (187), Expect = 1e-18
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKE--------FCVKFFGPRDTPYEGGVWK 52
                  N R+  ++ +  +   +GT   GL++        +     GP  T YE  ++ 
Sbjct: 20  TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 79

Query: 53  VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
           +++     YP   P + F+ K+    ++
Sbjct: 80  LKIECGPKYPEAPPFVRFVTKINMNGVN 107

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 76.3 bits (188), Expect = 1e-18
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTT--LKG---LKEFCVKFFGPRDTPYEGGVWKVRV 55
          M S S+  + + +++  L E   EG    L     L  + V  FGP +T YEGG +K R+
Sbjct: 3  MGSPSS-QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 61

Query: 56 HLPEHYPFKSPSIGFMNKMYHPNIDE 81
            P  YP+  P+  F+ KM+HPNI E
Sbjct: 62 KFPIDYPYSPPAFRFLTKMWHPNIYE 87

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GG +K R+  P  YP+  P+  F+ KM+HPNI E
Sbjct: 52  YEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 74.8 bits (184), Expect = 3e-18
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLKGLK--------EFCVKFFGPRDTPYEGGVWK 52
                  N R+  ++ +  +   +GT   GL+         +     GP  T YE  ++ 
Sbjct: 30  KGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 89

Query: 53  VRVHLPEHYPFKSPSIGFMNKMYHPNID 80
           +++     YP   P + F+ K+    ++
Sbjct: 90  LKIECGPKYPEAPPFVRFVTKINMNGVN 117

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 74.3 bits (183), Expect = 4e-18
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 2  SSASAGNRRMNIDVIKLIESKHEG--TTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVH 56
             S  ++ +  +V +L  +              L  F +    P +  Y+GG ++    
Sbjct: 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETE 68

Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDE 81
          +P+ Y    P +  + K++HPNI E
Sbjct: 69 VPDAYNMVPPKVKCLTKIWHPNITE 93

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           +Y GG ++    +P+ Y    P +  + K++HPNI E
Sbjct: 57  YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 77.3 bits (190), Expect = 5e-18
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
           +   +R++ ++  L        +       +  +     GP D+PY+GGV+ + +H P 
Sbjct: 1  GAMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60

Query: 60 HYPFKSPSIGFMNKMYHPNID 80
           YPFK P + F  ++YHPNI+
Sbjct: 61 DYPFKPPKVAFTTRIYHPNIN 81

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 74.0 bits (182), Expect = 6e-18
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNIDEVS 83
           L ++     GP DTPYE   +++ + +P  YP   P I FM   + H N+   +
Sbjct: 47  LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNIDEVSGE 126
           Y    +++ + +P  YP   P I FM   + H N+   +GE
Sbjct: 62  YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 73.6 bits (181), Expect = 7e-18
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          L  + V   GP DT YEGGV+K  +  P+ YP + P + F+ +++HPN+D+
Sbjct: 47 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+K  +  P+ YP + P + F+ +++HPN+D+
Sbjct: 62  YEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 73.1 bits (180), Expect = 9e-18
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
           P + PY+ G +++ ++ P  YPFK P I F  K+YHPNIDE
Sbjct: 40 VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y  G +++ ++ P  YPFK P I F  K+YHPNIDE
Sbjct: 46  YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 71.9 bits (177), Expect = 1e-17
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
          M +A+    R+  ++   + +     TL      ++ + VK+ G  +T Y   V+K+++ 
Sbjct: 4  MGNAN---YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKII 60

Query: 57 LPEHYPFKSPSIGFMNK-MYHPNIDE 81
           P+ YP K P + F+ K   H ++  
Sbjct: 61 FPDDYPLKPPIVYFLQKPPKHTHVYS 86

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 52.2 bits (126), Expect = 5e-10
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 122
           Y   V+K+++  P+ YP K P + F+ K   H ++  
Sbjct: 50  YANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 2   SSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKF--------FGPRDTPYEGGVWKV 53
            + SA   R+  D+  L         +    +   +           P +  Y  G    
Sbjct: 25  PNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINF 84

Query: 54  RVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
            +   E YP + P +  + K++HPNID 
Sbjct: 85  NLDFNEVYPIEPPKVVCLKKIFHPNIDL 112

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 56.3 bits (136), Expect = 5e-11
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           +Y  G     +   E YP + P +  + K++HPNID 
Sbjct: 76  YYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL 112

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 72.3 bits (178), Expect = 2e-17
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 40 GPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
           P   PY    + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 42 LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y+   + +R+  P  YPFK P I F  K+YHPN+DE
Sbjct: 48  YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 72.4 bits (178), Expect = 3e-17
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 2   SSASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLP 58
             ASA   R+  D+ +L   K    +      L  F +    P +  Y+ G +     + 
Sbjct: 22  KKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVG 80

Query: 59  EHYPFKSPSIGFMNKMYHPNIDE 81
           + YP   P +     +YHPNID 
Sbjct: 81  QGYPHDPPKVKCETMVYHPNIDL 103

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           FY  G +     + + YP   P +     +YHPNID 
Sbjct: 67  FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 103

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 71.2 bits (175), Expect = 3e-17
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLKG------LKEFCVKFFGPRDTPYEGGVWKVR 54
           M+S     +R+  +++ L      G TL        + ++ V   G   T YEG  +++ 
Sbjct: 20  MASMQ---KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 76

Query: 55  VHLPEHYPFKSPSIGFMNKM--YHPNID 80
                 YPF SP + F  +    HP++ 
Sbjct: 77  FKFSSRYPFDSPQVMFTGENIPVHPHVY 104

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 72.0 bits (177), Expect = 3e-17
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
            E+     GP DT +E GV+   +  P  YP   P + F  +M+HPNI  
Sbjct: 33 FFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 55.4 bits (134), Expect = 6e-11
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           +  GV+   +  P  YP   P + F  +M+HPNI  
Sbjct: 48  FEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP 83

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 72.0 bits (177), Expect = 3e-17
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
           M   +     ++ D   L E+ ++G T K     + E+ V+  G +++ ++G V+++ +H
Sbjct: 20  MHGRAY--LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIH 77

Query: 57  LPEHYPFKSPSIGFMNKMYHPNIDEVS 83
               Y +  P + F+   +HPN+D  +
Sbjct: 78  FTSEYNYAPPVVKFITIPFHPNVDPHT 104

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 72.0 bits (177), Expect = 3e-17
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
          MS+ +   RR+  D  ++ E    G +       +  +     GP DTPYE G +++ + 
Sbjct: 1  MSTPAR--RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLE 58

Query: 57 LPEHYPFKSPSIGFMNKMYHPNID 80
            E YP K P + F+++M+HPN+ 
Sbjct: 59 FDEEYPNKPPHVKFLSEMFHPNVY 82

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 71.6 bits (176), Expect = 3e-17
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          ASA   R+  D+ +L   K    +      L  F +    P +  Y+ G +     + + 
Sbjct: 4  ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62

Query: 61 YPFKSPSIGFMNKMYHPNIDE 81
          YP   P +     +YHPNID 
Sbjct: 63 YPHDPPKVKCETMVYHPNIDL 83

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 56.5 bits (137), Expect = 3e-11
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           FY  G +     + + YP   P +     +YHPNID 
Sbjct: 47  FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 71.5 bits (176), Expect = 4e-17
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTT--LKG--LKEFCVKFFGPRDTPYEGGVWKVRVH 56
          MS+ +   +R+  D  +L +    G +   +   +  +    FGP DTP++GG +K+ + 
Sbjct: 1  MSTPAR--KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQ 58

Query: 57 LPEHYPFKSPSIGFMNKMYHPNIDE 81
            E YP K P++ F+++M+HPNI  
Sbjct: 59 FSEDYPNKPPTVRFVSRMFHPNIYA 83

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           + GG +K+ +   E YP K P++ F+++M+HPNI  
Sbjct: 48  WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA 83

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 71.7 bits (176), Expect = 5e-17
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 31  LKEFCVKFFGPRDTPY--EGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
           +  + +K   P D+ Y   G  +++ V   + YP + P++ F+  +Y P +  
Sbjct: 49  IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 55.9 bits (135), Expect = 4e-11
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 89  GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           G  +++ V   + YP + P++ F+  +Y P +  
Sbjct: 68  GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 71.1 bits (175), Expect = 6e-17
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L+++     G   T + GGV+ + V  P  YP K P + F    YHPN+ 
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVY 87

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 70.4 bits (173), Expect = 6e-17
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 81
           ++ + V++ G  +T Y   V+K+++  P++YP K P + F+ K   H ++  
Sbjct: 49  IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDE 122
           Y   V+K+++  P++YP K P + F+ K   H ++  
Sbjct: 64  YANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 70.5 bits (173), Expect = 1e-16
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          +  +     GP DTPY  GV+  ++  P+ YP   P + F   + HPNI  
Sbjct: 34 IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y  GV+  ++  P+ YP   P + F   + HPNI  
Sbjct: 49  YADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 70.0 bits (172), Expect = 1e-16
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L  +     G + TP+EGG++K+R+   + YP   P   F   ++HPN+ 
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 52.7 bits (127), Expect = 6e-10
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           + GG++K+R+   + YP   P   F   ++HPN+ 
Sbjct: 56  WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 69.3 bits (170), Expect = 3e-16
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L  + V   G   T +EGG++K+ +  PE YP + P   F   ++HPN+ 
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           + GG++K+ +  PE YP + P   F   ++HPN+ 
Sbjct: 59  WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 69.3 bits (170), Expect = 3e-16
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
           L  +    FG   T +E  ++ + +   ++YP   P++ F  K+    +D
Sbjct: 54  LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 103

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 6/35 (17%), Positives = 17/35 (48%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           +   ++ + +   ++YP   P++ F  K+    +D
Sbjct: 69  FENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 103

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 38 FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
            GP  TPYEGG +  ++  P  +PFK PSI  +        +
Sbjct: 50 VRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 121
           Y GG +  ++  P  +PFK PSI  +        +
Sbjct: 58  YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 53.9 bits (129), Expect = 8e-10
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 39  FGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH-----PNIDE 81
            GP DTPY  G ++  V+ P+ YP   P +       H     PN+  
Sbjct: 117 TGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 12/57 (21%)

Query: 78  NIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYH-----PNIDE 122
            +D +  +        Y  G ++  V+ P+ YP   P +       H     PN+  
Sbjct: 108 RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 12/56 (21%)

Query: 36  VKFFG-PRDTPYEGGV-----------WKVRVHLPEHYPFKSPSIGFMNKMYHPNI 79
           VK      D+P    +             +     +++PF  P +  +  +     
Sbjct: 64  VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGY 119

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 89  GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
                +     +++PF  P +  +  +         G 
Sbjct: 88  IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGA 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.98
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.98
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.98
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.97
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.97
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.97
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.97
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.96
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.9
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.68
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.56
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	98.8
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	98.6
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	98.56
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	98.52
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	98.51
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	98.5
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	98.49
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	98.49
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	98.49
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	98.48
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	98.45
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	98.45
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	98.44
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	98.44
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	98.43
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	98.42
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	98.42
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	98.42
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	98.42
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	98.42
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	98.42
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	98.41
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	98.4
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	98.4
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	98.4
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	98.39
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	98.39
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	98.39
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	98.38
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	98.38
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	98.37
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	98.37
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	98.37
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	98.37
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	98.36
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	98.36
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	98.36
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	98.34
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	98.33
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	98.33
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	98.32
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	98.32
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	98.3
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	98.26
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	98.22
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	98.21
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	98.15
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.09
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	98.06
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	97.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	97.75
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	97.31
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	97.29
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.74
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	96.2
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	96.02
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.84
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.1
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	94.98
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	94.59
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	92.38
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	91.55
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	88.23
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	82.46

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=8.7e-38  Score=219.53  Aligned_cols=114  Identities=25%  Similarity=0.507  Sum_probs=106.7

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      ||  +++.+||++||++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   78 (169)
T 1ayz_A            1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   78 (169)
T ss_dssp             -C--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence            77  689999999999999999988876    789999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        77 pnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |||+. +|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus        79 PNI~~-~G~ICl~iL~~~WsP~~~i~~vL------~si~~ll~~Pn~~~P  121 (169)
T 1ayz_A           79 PNVYA-NGEICLDILQNRWTPTYDVASIL------TSIQSLFNDPNPASP  121 (169)
T ss_dssp             TTBCT-TSBBCCGGGTTTCCTTCCHHHHH------HHHHHHHTCCCCSSC
T ss_pred             CCCCC-CCeEeehhhccCCCCcCcHHHHH------HHHHHHHhCCCCCcH
Confidence            99995 999999   68899999999997      999999999998763

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.2e-37  Score=214.17  Aligned_cols=114  Identities=25%  Similarity=0.545  Sum_probs=107.3

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      ||  +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (152)
T 2aak_A            1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH   78 (152)
T ss_dssp             CC--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            78  689999999999999999888875    789999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        77 pnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |||+. +|.||+   .+.|+|++++.++|      .+++++|.+||.++.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  121 (152)
T 2aak_A           79 PNIYA-DGSICLDILQNQWSPIYDVAAIL------TSIQSLLCDPNPNSP  121 (152)
T ss_dssp             TTBCT-TSBBCCGGGTTSCCTTCCHHHHH------HHHHHHHTSCCTTSC
T ss_pred             CCCCC-CCEEechhhcCCCCCCCcHHHHH------HHHHHHHhCCCCCcc
Confidence            99995 999999   68999999999997      999999999998763

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-37  Score=213.66  Aligned_cols=112  Identities=29%  Similarity=0.593  Sum_probs=105.7

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ..+.+||++|+++|++++..++.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   83 (154)
T 2c2v_B            4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD   83 (154)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc
Confidence            578999999999999999888876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       .+|+||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        84 -~~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~pn~~~p  122 (154)
T 2c2v_B           84 -KLGRICLDILKDKWSPALQIRTVL------LSIQALLSAPNPDDP  122 (154)
T ss_dssp             -TTCBBCCHHHHTSCCTTCCHHHHH------HHHHHHTTSCCCCCC
T ss_pred             -cCCeEEchhccCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence             4899999   68999999999997      999999999998763

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=3.3e-37  Score=207.09  Aligned_cols=110  Identities=18%  Similarity=0.418  Sum_probs=96.5

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec-cccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNID   80 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~   80 (126)
                      .|.+||++|++++++++..++.+    +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~   85 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   85 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence            58899999999999998888765    7899999999999999999999999999999999999999999997 999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      . +|+||+   .+.|+|++++++++      ++++++|..|+.+.
T Consensus        86 ~-~G~iCl~iL~~~W~P~~~i~~vl------~si~~ll~~p~~~~  123 (125)
T 2fo3_A           86 S-NGDICLSLLGDDYNPSLSISGLV------LSIISMLSSAKEKK  123 (125)
T ss_dssp             T-TSBBCCGGGTTTCCTTCCHHHHH------HHHHHHHC------
T ss_pred             C-CCEEEchhcCCCCCCCCcHHHHH------HHHHHHHhCccccc
Confidence            5 999999   78999999999997      99999999998764

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-37  Score=216.70  Aligned_cols=113  Identities=19%  Similarity=0.403  Sum_probs=105.5

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus        22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~  101 (169)
T 1yrv_A           22 GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD  101 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence            678999999999999999888865    7899999999999999999999999999999999999999999999999994


Q ss_pred             cccceeee---C--ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---G--GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~--~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ..+|+||+   .  +.|+|+++++++|      ++++++|..||.++.
T Consensus       102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL------~sI~sll~~Pn~~~P  143 (169)
T 1yrv_A          102 PHTGQPCIDFLDNPEKWNTNYTLSSIL------LALQVMLSNPVLENP  143 (169)
T ss_dssp             TTTCCBCCHHHHCGGGCCTTCCHHHHH------HHHHHHHTSCCTTSC
T ss_pred             CCCCeEeehhhcCCcCCCCcCCHHHHH------HHHHHHHhCCCCCCc
Confidence            36999999   4  8999999999997      999999999998763

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=5.3e-37  Score=214.79  Aligned_cols=114  Identities=25%  Similarity=0.504  Sum_probs=105.4

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY   75 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~   75 (126)
                      ||  +.|.+||++|+++|++++..++.+     +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   78 (165)
T 2ucz_A            1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL   78 (165)
T ss_dssp             -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCc
Confidence            78  689999999999999999888875     48999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeee---C-------------ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYY---G-------------GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        76 Hpnv~~~~g~ic~---~-------------~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||||+. +|+||+   .             +.|+|+++++++|      ++++++|..||.++.
T Consensus        79 HPNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL------~si~~ll~~Pn~~~p  135 (165)
T 2ucz_A           79 HPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL------LSVMSMLSEPNIESG  135 (165)
T ss_dssp             CTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHH------HHHHHHHHSCCGGGC
T ss_pred             cCCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999995 999999   1             6899999999997      999999999998753

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-36  Score=211.46  Aligned_cols=112  Identities=24%  Similarity=0.487  Sum_probs=105.4

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   87 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence            578999999999999998888875    6899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+   .+.|+|++++.++|      ++++++|.+||.++.
T Consensus        88 ~-~G~iCl~iL~~~W~p~~~i~~vL------~si~~ll~~pn~~~p  126 (156)
T 2e2c_A           88 Q-SGNICLDILKENWTASYDVRTIL------LSLQSLLGEPNNASP  126 (156)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHTTSCCCSSC
T ss_pred             c-CceEECccccccCCCCCcHHHHH------HHHHHHHhCCCCCCH
Confidence            5 999999   78899999999997      999999999998763

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=9.6e-37  Score=210.75  Aligned_cols=113  Identities=27%  Similarity=0.605  Sum_probs=106.5

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      .+.|.+||++|+++|++++..++.+    +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            3688999999999999999988876    799999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         80 DEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        80 ~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +. +|+||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        82 ~~-~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  121 (151)
T 4gpr_A           82 NK-NGVICLDILKDQWSPALTLSRVL------LSISSLLTDPNPSDP  121 (151)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHCCCTTSC
T ss_pred             CC-CCEEEcccccCCCCCCCcHHHHH------HHHHHHhcCCCCCCc
Confidence            95 999999   68999999999997      999999999998763

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.3e-37  Score=213.09  Aligned_cols=111  Identities=23%  Similarity=0.482  Sum_probs=105.2

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ..+.+||++||++|++++..++.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   91 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence            678999999999999999988876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      . +|+||+   .+.|+|+++++++|      ++++++|.+||.++
T Consensus        92 ~-~G~iCl~iL~~~W~p~~~i~~vL------~~i~~ll~~pn~~~  129 (158)
T 1zdn_A           92 A-NGEICVNVLKRDWTAELGIRHVL------LTIKCLLIHPNPES  129 (158)
T ss_dssp             T-TSBBCHHHHTTTCCTTCCHHHHH------HHHHHHHHSCCGGG
T ss_pred             C-CCEEehhhcCCCCCCCCcHHHHH------HHHHHHHhCCCCCC
Confidence            5 899999   78999999999997      99999999999875

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.4e-36  Score=215.87  Aligned_cols=115  Identities=29%  Similarity=0.556  Sum_probs=105.4

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY   75 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~   75 (126)
                      |++ +.+.+||++||++|++++..++.+     +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|
T Consensus         3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   81 (183)
T 3rz3_A            3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW   81 (183)
T ss_dssp             --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence            554 578999999999999999988765     68999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeee---C-------------ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYY---G-------------GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        76 Hpnv~~~~g~ic~---~-------------~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||||+. +|+||+   .             +.|+|++++++||      ++++++|.+||.++.
T Consensus        82 HPnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL------~si~~ll~~Pn~~~p  138 (183)
T 3rz3_A           82 HPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL------LSVISLLNEPNTFSP  138 (183)
T ss_dssp             CTTBCT-TSBBCCTTC--------------CCCCTTCCHHHHH------HHHHHHHHSCCCSSC
T ss_pred             cCCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999995 999999   2             7899999999997      999999999998764

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.6e-36  Score=211.19  Aligned_cols=113  Identities=25%  Similarity=0.582  Sum_probs=103.9

Q ss_pred             hhhhhHHHHHHHHHHhc---CCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccc
Q psy11956          5 SAGNRRMNIDVIKLIES---KHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP   77 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~---~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp   77 (126)
                      +.+.+||++|+++|+++   +..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   86 (159)
T 2bep_A            7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCcc
Confidence            78999999999999884   4566654    7899999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         78 NIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        78 nv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||+..+|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus        87 ni~~~~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  129 (159)
T 2bep_A           87 NISSVTGAICLDILKDQWAAAMTLRTVL------LSLQALLAAAEPDDP  129 (159)
T ss_dssp             TBCTTTCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCCCCCCEEeChhhhccCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            99965899999   68899999999997      999999999998763

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.1e-36  Score=211.78  Aligned_cols=113  Identities=25%  Similarity=0.610  Sum_probs=106.0

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      .+.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus        17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV   96 (165)
T 2c4o_A           17 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   96 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcC
Confidence            4678999999999999999888875    789999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         80 DEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        80 ~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +. +|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        97 ~~-~G~ICl~iL~~~W~P~~ti~~vL------~si~~ll~~pn~~~P  136 (165)
T 2c4o_A           97 NS-NGSICLDILRSQWSPALTISKVL------LSICSLLCDPNPDDP  136 (165)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CC-CCeEeehhhcCCCCCcCcHHHHH------HHHHHHHhCCCCCcc
Confidence            95 999999   68999999999997      999999999998763

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.8e-36  Score=210.92  Aligned_cols=112  Identities=22%  Similarity=0.406  Sum_probs=105.0

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      +.|.+||++|+++|++++..++.+     +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            578999999999999999988875     389999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeee---C-------------ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         80 DEVSAVFYY---G-------------GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        80 ~~~~g~ic~---~-------------~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      + .+|+||+   .             +.|+|+++++++|      ++++++|..||.++.
T Consensus        82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL------~~i~~ll~~pn~~~p  134 (164)
T 3h8k_A           82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL------LSVVSMLAEPNDESG  134 (164)
T ss_dssp             C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHH------HHHHHHHHSCCCSSC
T ss_pred             C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHH------HHHHHHHcCCCCCCc
Confidence            9 5999999   3             7899999999997      999999999998763

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-36  Score=211.50  Aligned_cols=112  Identities=26%  Similarity=0.616  Sum_probs=105.5

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~   99 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN   99 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence            568999999999999999888876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus       100 ~-~G~ICL~iL~~~WsP~~ti~~vL------~sI~sll~~pn~~~P  138 (166)
T 2ayv_A          100 S-QGAICLDILKDQWSPALTISKVL------LSISSLLTDPNPDDP  138 (166)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             C-CCeEEcccccccCCCCCcHHHHH------HHHHHHHhCCCCCch
Confidence            4 999999   78999999999997      999999999998763

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-36  Score=212.00  Aligned_cols=112  Identities=29%  Similarity=0.595  Sum_probs=105.6

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~   82 (169)
T 1yh2_A            3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID   82 (169)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC
Confidence            678999999999999999888876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---C----ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---G----GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~----~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       .+|.||+   .    +.|+|+++++++|      ++++++|..||.++.
T Consensus        83 -~~G~iCl~iL~~~~~~~W~p~~~i~~vL------~si~~ll~~p~~~~p  125 (169)
T 1yh2_A           83 -SAGRICLDVLKLPPKGAWRPSLNIATVL------TSIQLLMSEPNPDDP  125 (169)
T ss_dssp             -TTCBBCCGGGSCTTTSCCCTTSCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             -cCCeEecccccCCcccCCCCCCcHHHHH------HHHHHHHhCCCCcch
Confidence             5999999   4    8999999999997      999999999998763

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.2e-36  Score=211.08  Aligned_cols=112  Identities=27%  Similarity=0.571  Sum_probs=105.4

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   83 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   83 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence            578899999999999999888876    6899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       .+|.||+   .+.|+|++++.++|      ++++++|.+||.++.
T Consensus        84 -~~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  122 (155)
T 1jat_A           84 -RLGRICLDVLKTNWSPALQIRTVL------LSIQALLASPNPNDP  122 (155)
T ss_dssp             -TTCCBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTST
T ss_pred             -CCCEEEchhhccCCCCCCCHHHHH------HHHHHHHhCCCCCCc
Confidence             6999999   78999999999997      999999999998753

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2e-36  Score=208.94  Aligned_cols=111  Identities=24%  Similarity=0.601  Sum_probs=104.8

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ..+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   82 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence            568899999999999999888875    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      . +|.||+   .+.|+|++++.++|      ++++++|.+||.++
T Consensus        83 ~-~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~pn~~~  120 (150)
T 1z2u_A           83 S-NGSICLDILRSQWSPALTISKVL------LSICSLLCDPNPDD  120 (150)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTS
T ss_pred             C-CCeEeeccccCCCCCCCCHHHHH------HHHHHHhhCCCCCC
Confidence            5 999999   68999999999997      99999999999876

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-36  Score=211.11  Aligned_cols=113  Identities=24%  Similarity=0.445  Sum_probs=105.1

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----c-----CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----K-----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      +.+|.+||++|+++|++++..++.+    +     |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            4789999999999999999999876    3     889999999999999999999999999999999999999999999


Q ss_pred             cccccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |||||+ .+|+||+     .+.|+|+++++++|      ++++++|..||.++.
T Consensus        88 ~HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL------~~i~~ll~~P~~~~p  134 (163)
T 3rcz_B           88 FHPNVY-PSGTVCLSILNEEEGWKPAITIKQIL------LGIQDLLDDPNIASP  134 (163)
T ss_dssp             CSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHH------HHHHHHHTSCCTTSC
T ss_pred             ccCCCC-CCCcEeccccCCCCCcCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999999 5999999     24699999999997      999999999998763

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-36  Score=214.99  Aligned_cols=112  Identities=22%  Similarity=0.484  Sum_probs=104.7

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++||++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  108 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD  108 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence            678899999999999998888865    6899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|+||+   .+.|+|+++++++|      ++++++|.+||.++.
T Consensus       109 ~-~G~ICL~iL~~~WsP~~ti~~vL------~sI~sll~~Pn~~~P  147 (179)
T 1i7k_A          109 T-QGNISLDILKEKWSALYDVRTIL------LSIQSLLGEPNIDSP  147 (179)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             c-CCeEEcccCcCcCCCCCCHHHHH------HHHHHHHhCCCCcch
Confidence            5 999999   78899999999997      999999999998763

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=3.5e-36  Score=211.89  Aligned_cols=112  Identities=27%  Similarity=0.536  Sum_probs=101.7

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN   78 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn   78 (126)
                      .+.+.+||++||++|++++..++.+     +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN   94 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN   94 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence            4789999999999999999888875     58999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeee---C-------------ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         79 IDEVSAVFYY---G-------------GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        79 v~~~~g~ic~---~-------------~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |+. +|+||+   .             +.|+|+++++++|      ++++++|..||.++
T Consensus        95 V~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL------~sI~sll~~Pn~~~  147 (172)
T 2awf_A           95 VDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIM------ISVISMLADPNGDS  147 (172)
T ss_dssp             BCT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHH------HHHHHHHSCC----
T ss_pred             CCC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHH------HHHHHHHHCcCCCC
Confidence            995 899999   2             6899999999997      99999999999875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.3e-36  Score=210.06  Aligned_cols=114  Identities=25%  Similarity=0.434  Sum_probs=104.0

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc---------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEe
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL---------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM   71 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~---------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~   71 (126)
                      ||  +.+.+||++|+++|++++..++.+         +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus         1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (157)
T 2gjd_A            1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP   78 (157)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence            77  678999999999999999988875         2789999999999999999999999999999999999999999


Q ss_pred             eeccccccccccceeee---Cc--eeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         72 NKMYHPNIDEVSAVFYY---GG--VWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        72 t~i~Hpnv~~~~g~ic~---~~--~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |++|||||+ .+|+||+   ..  .|+|+++++++|      ++++++|.+||.++.
T Consensus        79 t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  128 (157)
T 2gjd_A           79 AGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIV------LGVQDLLDSPNPNSP  128 (157)
T ss_dssp             TTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHH------HHHHHHHTSCCTTCC
T ss_pred             CCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999999999 5999999   33  799999999997      999999999998763

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.9e-36  Score=208.81  Aligned_cols=110  Identities=28%  Similarity=0.604  Sum_probs=103.4

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      +.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. 
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-   80 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-   80 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-
Confidence            4699999999999999888875    78999999999999999999999999999999999999999999999999995 


Q ss_pred             cceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         83 SAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        83 ~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|+||+   .+.|+|+++++++|      ++++++|.+||.++.
T Consensus        81 ~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  118 (149)
T 2r0j_A           81 LGRICLDILKDKWSPALQIRTVL------LSIQALLSSPEPDDP  118 (149)
T ss_dssp             TCBBCCGGGTTTCCTTSCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCEEechhcCCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            899999   78999999999997      999999999998763

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.8e-36  Score=204.06  Aligned_cols=109  Identities=17%  Similarity=0.414  Sum_probs=102.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec-ccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNI   79 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv   79 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv   98 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV   98 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence            478899999999999998888765    7899999999999999999999999999999999999999999996 99999


Q ss_pred             ccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCC
Q psy11956         80 DEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI  120 (126)
Q Consensus        80 ~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~  120 (126)
                      +. +|+||+   .+.|+|+++++++|      ++++++|..|+.
T Consensus        99 ~~-~G~ICl~iL~~~WsP~~ti~~vL------~si~sll~~p~~  135 (136)
T 2h2y_A           99 YS-NGDICLSVLGDDYNPSLSISGLI------LSIISMLSSAKE  135 (136)
T ss_dssp             CT-TCCBCCGGGTTTCCTTCCHHHHH------HHHHHHHSSSCC
T ss_pred             CC-CCEEECccccCCCCCCCcHHHHH------HHHHHHHhCcCc
Confidence            95 999999   78999999999997      999999998874

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2.1e-36  Score=208.66  Aligned_cols=111  Identities=28%  Similarity=0.587  Sum_probs=103.5

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      +.+||++|+++|++++..++.+    + |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            4799999999999998888875    4 8999999999999999999999999999999999999999999999999995


Q ss_pred             ccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      .+|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus        82 ~~G~iCl~iL~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  120 (149)
T 1fxt_A           82 VTGAICLDILKNAWSPVITLKSAL------ISLQALLQSPEPNDP  120 (149)
T ss_dssp             SSCCBCCHHHHTSCCTTCCHHHHH------HHHHHHHHSCCSSSC
T ss_pred             CCCeEeCCcCCCCCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            5999999   68899999999997      999999999998753

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=4e-36  Score=218.07  Aligned_cols=113  Identities=22%  Similarity=0.496  Sum_probs=106.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus        22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~  101 (216)
T 2pwq_A           22 SKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS  101 (216)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCc
Confidence            678999999999999999888876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ..+|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus       102 ~~~G~ICL~iL~~~WsP~~ti~~VL------~sI~sLL~~Pnp~dP  141 (216)
T 2pwq_A          102 SQTGAICLDVLKNEWSPALTIRTAL------LSIQALLSDPQPDDP  141 (216)
T ss_dssp             TTTCBBCCHHHHHHCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCCCEEEchhhcccCCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            65899999   67899999999997      999999999998763

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=5.2e-36  Score=209.04  Aligned_cols=114  Identities=23%  Similarity=0.441  Sum_probs=104.9

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc---------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEe
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL---------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFM   71 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~---------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~   71 (126)
                      ||  +.+.+||++|+++|++++..++.+         +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.
T Consensus         4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence            56  678999999999999999888764         3788999999999999999999999999999999999999999


Q ss_pred             eeccccccccccceeee---C--ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         72 NKMYHPNIDEVSAVFYY---G--GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        72 t~i~Hpnv~~~~g~ic~---~--~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |++|||||+ .+|.||+   .  +.|+|+++++++|      ++++++|.+||.++.
T Consensus        82 t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  131 (161)
T 2grr_A           82 PPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQIL------LGIQELLNEPNIQSP  131 (161)
T ss_dssp             SCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             cCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHH------HHHHHHHhCCCCCCc
Confidence            999999999 5999999   2  4899999999997      999999999998763

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=5.2e-36  Score=215.63  Aligned_cols=115  Identities=25%  Similarity=0.591  Sum_probs=104.0

Q ss_pred             CCCchhhhhHHHHHHHHHHhcC---CCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          1 MSSASAGNRRMNIDVIKLIESK---HEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~---~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ||  +.|.+||++||++|+++.   ..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            77  679999999999998762   456654    789999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         74 MYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        74 i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||||||+..+|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus        80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL------~~i~~ll~~p~p~~p  126 (201)
T 3k9o_A           80 IWHPNISSVTGAICLDILKDQWAAAMTLRTVL------LSLQALLAAAEPDDP  126 (201)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             cccCCCcCCCCeeeCcccccCCCCCCCHHHHH------HHHHHHhcCCCCCCc
Confidence            999999955899999   68999999999997      999999999998763

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=211.56  Aligned_cols=117  Identities=58%  Similarity=0.972  Sum_probs=101.3

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ||+.+++.+||++|+++|++........+|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus        20 ms~~~~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~   99 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID   99 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             CCCchHHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence            66656799999999999986432211127889999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeee-eeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIG-FMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~-~~~~l~~pn~~~~  123 (126)
                      ..+|.||+   .+.|+|+++++++|      ++ ++++|..||.++.
T Consensus       100 ~~~G~ICL~iL~~~WsP~~ti~~iL------~s~I~~Ll~~Pn~~~p  140 (179)
T 2z5d_A          100 EASGTVCLDVINQTWTALYDLTNIF------ESFLPQLLAYPNPIDP  140 (179)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTTHHH------HTHHHHHHHSCCCSSC
T ss_pred             CCCCeEeccccccCCCCCCCHHHHH------HHHHHHHHhCCCCCCc
Confidence            55999999   68999999999997      88 8899999998763

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.8e-35  Score=211.71  Aligned_cols=112  Identities=21%  Similarity=0.468  Sum_probs=105.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++||++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            568899999999999998888875    7999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus       127 ~-~G~ICL~iL~~~WsP~~ti~~vL------~sI~~ll~~pnp~~P  165 (194)
T 3bzh_A          127 S-QGVICLDILKDNWSPALTISKVL------LSICSLLTDCNPADP  165 (194)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             C-CCceechhhhccCCCcCcHHHHH------HHHHHHHhCCCCccc
Confidence            5 999999   78999999999997      999999999998753

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=4.1e-36  Score=204.86  Aligned_cols=115  Identities=17%  Similarity=0.307  Sum_probs=99.7

Q ss_pred             CCCchhhhhHHHHHHHHHHhc-CCCcccc-----c--CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956          1 MSSASAGNRRMNIDVIKLIES-KHEGTTL-----K--GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~-~~~~~~~-----~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      ||+ .++.+||++|+++|+++ +..++.+     +  |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|
T Consensus         2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   80 (138)
T 1jat_B            2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS   80 (138)
T ss_dssp             -CC-CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc
Confidence            664 57889999999999987 6777654     2  3889999999999999999999999999999999999999999


Q ss_pred             ecccccccccccee--ee--CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         73 KMYHPNIDEVSAVF--YY--GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        73 ~i~Hpnv~~~~g~i--c~--~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      +||||||+..+|.|  |+  -+.|+|++++++++      ++++++|.+||.++
T Consensus        81 ~i~HPnv~~~~G~i~~cL~~l~~W~p~~~i~~vl------~~i~~ll~~pn~~~  128 (138)
T 1jat_B           81 KINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLL------LDLRKEMATPANKK  128 (138)
T ss_dssp             CCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHH------HHHHHHHTSHHHHT
T ss_pred             ccccCCEeCCCCEEeeecccCCCCCCcCcHHHHH------HHHHHHHcCCCCCC
Confidence            99999999644999  88  36899999999997      99999999988654

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-35  Score=212.19  Aligned_cols=113  Identities=19%  Similarity=0.480  Sum_probs=101.6

Q ss_pred             hhhhhHHHHHHHHHHhcCC-------------Ccccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCc
Q psy11956          5 SAGNRRMNIDVIKLIESKH-------------EGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS   67 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~-------------~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~   67 (126)
                      ..+.+||++||++|++++.             .++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~  110 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK  110 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCe
Confidence            4578999999999999876             56664    789999999999999999999999999999999999999


Q ss_pred             eeEeeeccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         68 IGFMNKMYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        68 v~f~t~i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |+|.|+||||||+..+|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus       111 V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL------~sI~sll~~pnp~~P  163 (193)
T 2f4z_A          111 MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL------LSIQAMLADPVPTDP  163 (193)
T ss_dssp             EEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             EEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHH------HHHHHHHhCCCCCCc
Confidence            999999999999955899999   67899999999997      999999999998763

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-35  Score=200.41  Aligned_cols=102  Identities=19%  Similarity=0.426  Sum_probs=94.3

Q ss_pred             hhhHHHHHHHHHHhcCCCccc--c----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecc--ccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTT--L----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMY--HPN   78 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~--~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~--Hpn   78 (126)
                      +.+||++|+++|++++..++.  +    +|+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++|  |||
T Consensus        23 ~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN  102 (136)
T 2a7l_A           23 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH  102 (136)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence            359999999999999888876  2    68999999999999999999999999999999999999999999998  999


Q ss_pred             cccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956         79 IDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKM  115 (126)
Q Consensus        79 v~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l  115 (126)
                      |+. +|+||+   .+.|+|+++++++|      ++++++|
T Consensus       103 V~~-~G~ICL~iL~~~WsP~~ti~~vL------~sI~slL  135 (136)
T 2a7l_A          103 VYS-NGHICLSILTEDWSPALSVQSVC------LSIISML  135 (136)
T ss_dssp             BCT-TCBBCCGGGTTTCCTTSCHHHHH------HHHHHHT
T ss_pred             CCC-CCeEEchhcCCCCCCCCcHHHHH------HHHHHHh
Confidence            995 999999   78999999999997      8877765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=4.6e-35  Score=203.89  Aligned_cols=113  Identities=16%  Similarity=0.277  Sum_probs=101.6

Q ss_pred             hhhhhHHHHHHHHHHhcCCCc-ccc-----cC--cccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEG-TTL-----KG--LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~-~~~-----~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      .++.+||++|+++|++++.++ +.+     +|  +++|+++|.||++|+||||.|+++|.||++||++||+|+|.|++||
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  103 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  103 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence            678999999999999988777 332     33  8899999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee---C--ceeeEEEEeCCCCCCCCCeeeeeccCC-CCCCCCC
Q psy11956         77 PNIDEVSAVFYY---G--GVWKVRVHLPEHYPFKSPSIGFMNKMY-HPNIDEV  123 (126)
Q Consensus        77 pnv~~~~g~ic~---~--~~w~p~~~~~~ilp~~~p~~~~~~~l~-~pn~~~~  123 (126)
                      |||+..+|+||+   .  +.|+|+++++++|      ++++++|. .||.++.
T Consensus       104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL------~sI~~ll~~~pn~~~P  150 (160)
T 2a4d_A          104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVL------QELRRLMMSKENMKLP  150 (160)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHH------HHHHHHHTSTTTTTCC
T ss_pred             CCEECCCCEEehhhcCCccCCCccCcHHHHH------HHHHHHHccCCCCCCC
Confidence            999955899997   3  8999999999997      99999985 6887753

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=4.9e-35  Score=206.05  Aligned_cols=114  Identities=20%  Similarity=0.353  Sum_probs=101.8

Q ss_pred             chhhhhHHHHHHHHHHh-c-C------CC---ccc-----ccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCc
Q psy11956          4 ASAGNRRMNIDVIKLIE-S-K------HE---GTT-----LKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS   67 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~-~-~------~~---~~~-----~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~   67 (126)
                      .+.+.+||++||++|++ . +      ..   ++.     .+|++.|+++|.||++|||+||.|+++|.||++||++||+
T Consensus         4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~   83 (172)
T 2y9m_A            4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK   83 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence            37899999999999988 5 3      22   232     2689999999999999999999999999999999999999


Q ss_pred             eeEee-eccccccccccceeee---C-ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         68 IGFMN-KMYHPNIDEVSAVFYY---G-GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        68 v~f~t-~i~Hpnv~~~~g~ic~---~-~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |+|.| +||||||+..+|.||+   . +.|+|+++++++|      ++++++|.+||.++.
T Consensus        84 v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL------~si~~ll~~p~~~~p  138 (172)
T 2y9m_A           84 ISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCV------HAVWRLLREPVCDSP  138 (172)
T ss_dssp             EEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             EEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            99999 9999999645899999   4 8999999999997      999999999998763

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=6.2e-35  Score=216.03  Aligned_cols=113  Identities=25%  Similarity=0.582  Sum_probs=104.2

Q ss_pred             hhhhhHHHHHHHHHHhc---CCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccc
Q psy11956          5 SAGNRRMNIDVIKLIES---KHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHP   77 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~---~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hp   77 (126)
                      +.+.+||++||++|+++   +..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  135 (253)
T 3e46_A           56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP  135 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccC
Confidence            68999999999999876   3456654    7899999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         78 NIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        78 nv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||+..+|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus       136 NV~~~~G~ICL~iL~~~WsP~~ti~~vL------~sI~~ll~~pnp~~P  178 (253)
T 3e46_A          136 NISSVTGAICLDILKDQWAAAMTLRTVL------LSLQALLAAAEPDDP  178 (253)
T ss_dssp             TBCTTTCBBCCGGGTTCCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CccCCCCeeecccccCCCCCCCCHHHHH------HHHHHHhcCCCCCCh
Confidence            99955899999   78999999999997      999999999998763

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.2e-35  Score=215.44  Aligned_cols=112  Identities=28%  Similarity=0.586  Sum_probs=103.7

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      .+.+||++|+++|++++..++.+    + ++..|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            57899999999999999888876    3 456999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ..+|.||+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus        82 ~~~G~ICL~iL~~~WsP~~ti~~VL------~sI~sLL~~Pnp~~P  121 (215)
T 1tte_A           82 SVTGAICLDILRNAWSPVITLKSAL------ISLQALLQSPEPNDP  121 (215)
T ss_dssp             SSSSCCCSSTTTCCSCTTCCHHHHH------HHHHHHHTSCCCSSC
T ss_pred             CCCCEEECccCCCCCCCcCcHHHHH------HHHHHHHhCCCCCCc
Confidence            55999999   78999999999997      999999999998763

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.8e-34  Score=200.25  Aligned_cols=111  Identities=15%  Similarity=0.299  Sum_probs=101.0

Q ss_pred             hhhhhHHHHHHHHHHhc-CCCcccc-----c--CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          5 SAGNRRMNIDVIKLIES-KHEGTTL-----K--GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~-~~~~~~~-----~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      .++.+||++|+++|+++ +..++.+     +  |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   99 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM   99 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence            67899999999999988 6777654     2  48899999999999999999999999999999999999999999999


Q ss_pred             ccccccccee---ee--CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         77 PNIDEVSAVF---YY--GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        77 pnv~~~~g~i---c~--~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |||+. +|+|   |+  -+.|+|+++++++|      ++++++|..||.++
T Consensus       100 PNV~~-~G~icisCL~iL~~WsP~~ti~~vL------~sI~~ll~~Pn~~~  143 (156)
T 2q0v_A          100 SCVDN-CGRVIKNNLHILKNWNRNYTIETIL------ISLRQEMLSSANKR  143 (156)
T ss_dssp             TTBCT-TSBBCGGGSHHHHTCCTTCCHHHHH------HHHHHHTTSTTTTT
T ss_pred             CCCcc-CCeEehhhcccccCCCCcCcHHHHH------HHHHHHHhCCCCCC
Confidence            99995 8999   77  34699999999997      99999999999775

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1e-34  Score=204.27  Aligned_cols=111  Identities=39%  Similarity=0.705  Sum_probs=100.1

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc-cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL-KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA   84 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g   84 (126)
                      .+.+||++|+++|++++.. +.. +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        12 ~~~~RL~~El~~l~~~~~~-v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G   90 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTRK-VYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSG   90 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSSC-EEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             cHHHHHHHHHHHHHhCCCC-CCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCC
Confidence            6789999999999988753 333 89999999999999999999999999999999999999999999999999995589


Q ss_pred             eeee---CceeeEEEEeCCCCCCCCCeeee-eccCCCCCCCCC
Q psy11956         85 VFYY---GGVWKVRVHLPEHYPFKSPSIGF-MNKMYHPNIDEV  123 (126)
Q Consensus        85 ~ic~---~~~w~p~~~~~~ilp~~~p~~~~-~~~l~~pn~~~~  123 (126)
                      .||+   .+.|+|+++++++|      +++ +++|..||.++.
T Consensus        91 ~iCl~iL~~~W~p~~~i~~vL------~sil~~ll~~Pn~~~p  127 (171)
T 1yf9_A           91 SVCLDVINQTWTPMYQLENIF------DVFLPQLLRYPNPSDP  127 (171)
T ss_dssp             BBCHHHHHHHCCTTCCTHHHH------HTHHHHHHHSCCSSCC
T ss_pred             eEeccccccCCCCCCcHHHHH------HHHHHHHHhCCCCCCc
Confidence            9999   68999999999997      887 588889998763

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=5.9e-35  Score=202.02  Aligned_cols=112  Identities=38%  Similarity=0.645  Sum_probs=98.3

Q ss_pred             hhhhHHHHHHHHHHhcCCCccc-ccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTT-LKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSA   84 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g   84 (126)
                      .+.+||++|+++|+++...... .+|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|
T Consensus         2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G   81 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG   81 (152)
T ss_dssp             -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred             hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence            4789999999999886432111 278999999999999999999999999999999999999999999999999995589


Q ss_pred             eeee---CceeeEEEEeCCCCCCCCCeee-eeccCCCCCCCCC
Q psy11956         85 VFYY---GGVWKVRVHLPEHYPFKSPSIG-FMNKMYHPNIDEV  123 (126)
Q Consensus        85 ~ic~---~~~w~p~~~~~~ilp~~~p~~~-~~~~l~~pn~~~~  123 (126)
                      .||+   .+.|+|+++++++|      .+ ++++|.+||.++.
T Consensus        82 ~iCl~il~~~W~p~~~i~~vl------~~ii~~Ll~~Pn~~~P  118 (152)
T 2onu_A           82 SVCLDVINQTWTPLYSLVNVF------EVFLPQLLTYPNPSDP  118 (152)
T ss_dssp             BBCHHHHHHHCCTTCCHHHHH------HTHHHHHHHSCCCSSC
T ss_pred             eEecccccccCCCCCCHHHHH------HHHHHHHHhCCCCCCc
Confidence            9999   68899999999996      77 5688889998763

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.3e-34  Score=200.77  Aligned_cols=110  Identities=25%  Similarity=0.433  Sum_probs=102.6

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      .+.+||++|+++|++++..++.+     +|++.|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            47899999999999998888765     68999999999 9999999999999999999999999999999999999999


Q ss_pred             cccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+    .+.|+|+++++++|      ++++++|.+||.++.
T Consensus        83 ~-~G~iCl~iL~~~~W~p~~~i~~vl------~~i~~ll~~p~~~~p  122 (155)
T 1wzv_A           83 E-NGQICLPIISSENWKPCTKTCQVL------EALNVLVNRPNIREP  122 (155)
T ss_dssp             T-TCBCCCGGGCTTTCCTTCCHHHHH------HHHHHHHHSCCSSSC
T ss_pred             C-CCeEeecCCCccCCCCCCcHHHHH------HHHHHHHhCCCCCch
Confidence            5 999999    48999999999997      999999999998763

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=3.6e-34  Score=200.70  Aligned_cols=111  Identities=20%  Similarity=0.380  Sum_probs=102.2

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN   78 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn   78 (126)
                      .+.+.+||++||++|++++..++.+     +|+..|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        12 ~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   90 (167)
T 3fn1_B           12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPN   90 (167)
T ss_dssp             CCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSS
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCC
Confidence            3689999999999999999888765     5788999998 899999999999999999999999999999999999999


Q ss_pred             cccccceeee---C------ceeeEEEEeCCCCCCCCCeeeeeccCCC-CCCCC
Q psy11956         79 IDEVSAVFYY---G------GVWKVRVHLPEHYPFKSPSIGFMNKMYH-PNIDE  122 (126)
Q Consensus        79 v~~~~g~ic~---~------~~w~p~~~~~~ilp~~~p~~~~~~~l~~-pn~~~  122 (126)
                      |+ .+|+||+   .      +.|+|+++++++|      ++++++|.. ||.++
T Consensus        91 v~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl------~~i~~ll~~~pn~~~  137 (167)
T 3fn1_B           91 IT-ETGEICLSLLREHSIDGTGWAPTRTLKDVV------WGLNSLFTDLLNFDD  137 (167)
T ss_dssp             BC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHH------HHHHHTTTTTCCSSS
T ss_pred             CC-CCCEEechhhccCCCCCCCCCCcCcHHHHH------HHHHHHHcCCCCCCc
Confidence            99 5999999   2      3799999999997      999999998 68875

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.98  E-value=1.6e-34  Score=202.97  Aligned_cols=112  Identities=17%  Similarity=0.292  Sum_probs=100.6

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcc-cc-----cC--cccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGT-TL-----KG--LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~-~~-----~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      .++.+||++||++|++++.+++ .+     +|  +++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  113 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  113 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence            4689999999999999887773 22     33  8899999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee---C--ceeeEEEEeCCCCCCCCCeeeeeccCC-CCCCCC
Q psy11956         77 PNIDEVSAVFYY---G--GVWKVRVHLPEHYPFKSPSIGFMNKMY-HPNIDE  122 (126)
Q Consensus        77 pnv~~~~g~ic~---~--~~w~p~~~~~~ilp~~~p~~~~~~~l~-~pn~~~  122 (126)
                      |||+..+|.||+   .  +.|+|+++++++|      ++++++|. .||.++
T Consensus       114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL------~sI~~ll~~~pn~~~  159 (170)
T 2hlw_A          114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVL------QELRRLMMSKENMKL  159 (170)
T ss_dssp             SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHH------HHHHHHHHSTTTSSS
T ss_pred             CCEeCCCCEEEhhhcCCCCCCCccCcHHHHH------HHHHHHHccCCCCCC
Confidence            999855999996   4  8999999999997      99999986 588765

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.98  E-value=1.3e-34  Score=200.64  Aligned_cols=108  Identities=24%  Similarity=0.521  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      |.+||++|+++|++++..++.+     +|++.|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   81 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   81 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence            7899999999999998888753     68999999998 99999999999999999999999999999999999999995


Q ss_pred             ccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         82 VSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        82 ~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                       +|.||+    .+.|+|+++++++|      ++++++|.+||.++
T Consensus        82 -~G~iCl~iL~~~~W~p~~~i~~vl------~~i~~ll~~p~~~~  119 (154)
T 1c4z_D           82 -KGQVCLPVISAENWKPATKTDQVI------QSLIALVNDPQPEH  119 (154)
T ss_dssp             -TCBBCCTTTSSSSCCTTCCHHHHH------HHHHHHHHSCCCSS
T ss_pred             -CCEEECCCCCCCCCCCCCcHHHHH------HHHHHHHcCCCCCc
Confidence             999999    37999999999997      99999999999875

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=4.4e-34  Score=199.11  Aligned_cols=109  Identities=22%  Similarity=0.396  Sum_probs=99.2

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      +.+.+||++|+++|  ++..++.+     +|++.|+++| ||++|+|+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   81 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence            47899999999999  34555543     6899999988 9999999999999999999999999999999999999999


Q ss_pred             ccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         80 DEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        80 ~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +. +|.||+   .+.|+|+++++++|      ++++++|.+||.++.
T Consensus        82 ~~-~G~iCl~iL~~~W~p~~~i~~vL------~~i~~ll~~Pn~~~p  121 (160)
T 1y8x_A           82 DL-EGNVCLNILREDWKPVLTINSII------YGLQYLFLEPNPEDP  121 (160)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCCSSC
T ss_pred             CC-CCeEEcccchhhccCCCCHHHHH------HHHHHHHhCCCCCCc
Confidence            95 899999   68999999999997      999999999998763

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=9e-34  Score=200.84  Aligned_cols=110  Identities=23%  Similarity=0.395  Sum_probs=100.1

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN   78 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpn   78 (126)
                      .+.+.+||++|+++|  ++..++.+     +|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN  100 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN  100 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence            367899999999999  45556543     7899999988 999999999999999999999999999999999999999


Q ss_pred             cccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         79 IDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        79 v~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |+. +|.||+   .+.|+|+++++++|      ++++++|.+||.++.
T Consensus       101 V~~-~G~iCl~iL~~~W~p~~~i~~vL------~si~~ll~~Pn~~~p  141 (180)
T 2nvu_C          101 IDL-EGNVALNILREDWKPVLTINSII------YGLQYLFLEPNPEDP  141 (180)
T ss_dssp             BCT-TSBBCCGGGTTSCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCC-CCcEEcccccccCCCCCCHHHHH------HHHHHHHhCCCCCCc
Confidence            995 999999   68999999999997      999999999998763

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.97  E-value=7.5e-34  Score=199.14  Aligned_cols=99  Identities=21%  Similarity=0.470  Sum_probs=90.9

Q ss_pred             CCCchhhhhHHHHHHHHHHhcC------------CCcccc----cCcccEEEEEECCCCCCCC--CCEEEEEEEcCCCCC
Q psy11956          1 MSSASAGNRRMNIDVIKLIESK------------HEGTTL----KGLKEFCVKFFGPRDTPYE--GGVWKVRVHLPEHYP   62 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~------------~~~~~~----~~~~~w~~~i~gp~~t~y~--gg~f~~~i~~p~~yP   62 (126)
                      ||  +.+.+||++|+++|++++            ..++.+    +|+++|+++|.||++|+|+  ||.|+++|.||++||
T Consensus         5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            77  679999999999999876            455544    8999999999999999999  999999999999999


Q ss_pred             CCCCceeEeeeccccccccccceeee---CceeeEEEEeCCCC
Q psy11956         63 FKSPSIGFMNKMYHPNIDEVSAVFYY---GGVWKVRVHLPEHY  102 (126)
Q Consensus        63 ~~pP~v~f~t~i~Hpnv~~~~g~ic~---~~~w~p~~~~~~il  102 (126)
                      ++||+|+|.|++|||||+ .+|.||+   .+.|+|++++++++
T Consensus        83 ~~pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vl  124 (167)
T 4ds2_A           83 HEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVI  124 (167)
T ss_dssp             TSCCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHH
T ss_pred             CCCCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHH
Confidence            999999999999999999 5999999   68999999998864

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.97  E-value=1.2e-32  Score=215.45  Aligned_cols=112  Identities=24%  Similarity=0.606  Sum_probs=106.1

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.|.+||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            578999999999999999999876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+   .+.|+|+++++++|      ++++++|..||+++.
T Consensus        82 ~-~G~iCl~il~~~W~p~~~i~~vL------~~i~~ll~~pnp~~p  120 (399)
T 4ddg_A           82 S-NGSISLDILRSQWSPALTISKVL------LSICSLLCDPNPDDP  120 (399)
T ss_dssp             T-TCBBCCGGGTTSCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             C-CCeEeCcccccCCCccccHHHHH------HHHHHHHcCCCCCch
Confidence            5 999999   78999999999997      999999999998863

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=2.4e-32  Score=194.53  Aligned_cols=108  Identities=19%  Similarity=0.404  Sum_probs=97.5

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.+||++|+++|++++..++.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |+|++
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~   90 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK   90 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence            568899999999999999888865    789999999999999999999999999999999999999999999  89998


Q ss_pred             cccceeee------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956         81 EVSAVFYY------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID  121 (126)
Q Consensus        81 ~~~g~ic~------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~  121 (126)
                       .+|+||+      .+.|+|++++.++|      ++++++|..||.+
T Consensus        91 -~~G~ICL~iL~~~~~~W~P~~ti~~vL------~si~sll~~p~p~  130 (187)
T 2f4w_A           91 -CNTRLCLSITDFHPDTWNPAWSVSTIL------TGLLSFMVEKGPT  130 (187)
T ss_dssp             -TTSCBC----------CCTTCCHHHHH------HHHHHHHHSCCCC
T ss_pred             -cCCeEeeeccccCccCCCCcCcHHHHH------HHHHHHhcCCCCC
Confidence             4899999      27899999999997      9999999999876

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=8.6e-32  Score=204.58  Aligned_cols=111  Identities=22%  Similarity=0.445  Sum_probs=99.5

Q ss_pred             hhhhhHHHHHHHHHHhcCCCccc----c----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee---
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTT----L----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK---   73 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~----~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~---   73 (126)
                      +.+.+||++|+++|++++..++.    +    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+   
T Consensus        75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~  154 (323)
T 3ceg_A           75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH  154 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCC
Confidence            68999999999999998776532    1    789999999999999999999999999999999999999999998   


Q ss_pred             --ccccccccccceeee---C-------ceeeEEE-EeCCCCCCCCCeeeeeccCC--CCCCCC
Q psy11956         74 --MYHPNIDEVSAVFYY---G-------GVWKVRV-HLPEHYPFKSPSIGFMNKMY--HPNIDE  122 (126)
Q Consensus        74 --i~Hpnv~~~~g~ic~---~-------~~w~p~~-~~~~ilp~~~p~~~~~~~l~--~pn~~~  122 (126)
                        +|||||+ .+|+||+   .       +.|+|++ ++.+||      ++++++|.  .||.++
T Consensus       155 ~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VL------lsIqsLL~~~~Pn~~d  211 (323)
T 3ceg_A          155 SVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVL------VSVQSLILVAEPYFNE  211 (323)
T ss_dssp             TCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHH------HHHHHHTSCSSGGGGS
T ss_pred             cccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHH------HHHHHHHcCCCCCCCC
Confidence              9999999 5999999   3       6899999 899997      99999997  554443

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.97  E-value=4.8e-32  Score=193.43  Aligned_cols=110  Identities=24%  Similarity=0.363  Sum_probs=99.2

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc--------cCcc---cEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL--------KGLK---EFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~--------~~~~---~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      .++|.+||++||++|+  ...++.+        +|++   .|+++|. |++|||+||.|+++|.||++||++||+|+|.|
T Consensus        27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t  103 (190)
T 3o2u_A           27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK  103 (190)
T ss_dssp             CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred             ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence            3689999999999998  3444322        6889   9999997 78899999999999999999999999999999


Q ss_pred             eccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         73 KMYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        73 ~i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ++|||||+. +|.||+   .+.|+|+++++++|      ++++++|..||.++.
T Consensus       104 ~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL------~~i~~ll~~pn~~~p  150 (190)
T 3o2u_A          104 KIFHPNIDL-KGNVCLNILREDWSPALDLQSII------TGLLFLFLEPNPNDP  150 (190)
T ss_dssp             CCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CcccCCCCC-CCeEechhccCCCCCCCCHHHHH------HHHHHHHhCCCCCcc
Confidence            999999995 999999   68999999999997      999999999998863

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.96  E-value=2.7e-32  Score=194.09  Aligned_cols=109  Identities=10%  Similarity=0.193  Sum_probs=98.7

Q ss_pred             hhhhhHHHHHHHHHHhcC---CCcccc----cCcccEEEEEECC-CCCCCCC-----------CEEEEEEEcCCCCCCCC
Q psy11956          5 SAGNRRMNIDVIKLIESK---HEGTTL----KGLKEFCVKFFGP-RDTPYEG-----------GVWKVRVHLPEHYPFKS   65 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~---~~~~~~----~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~~p~~yP~~p   65 (126)
                      +.+.+||++||++|++++   ..++.+    +|++.|+++|.|| ++|||+|           |.|+++|.||++||++|
T Consensus        26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P  105 (186)
T 1zuo_A           26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP  105 (186)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence            689999999999999877   455554    7899999999997 9999998           89999999999999999


Q ss_pred             CceeEeeecccc-ccccccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCC
Q psy11956         66 PSIGFMNKMYHP-NIDEVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI  120 (126)
Q Consensus        66 P~v~f~t~i~Hp-nv~~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~  120 (126)
                      |+|+|.+++||| ||+ .+|.||+    .+.|+|+++++++|      ++++++|..|+.
T Consensus       106 P~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL------~sI~slL~~p~a  158 (186)
T 1zuo_A          106 PFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVI------MQINATLVKGKA  158 (186)
T ss_dssp             CEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHH------HHHHHHHHHTTC
T ss_pred             CeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHH------HHHHHHHcCCCh
Confidence            999999999999 699 5999999    37999999999997      999998887764

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.90  E-value=9.4e-26  Score=156.10  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCC----------EEEEEEEcCCCCCCCCCceeEeee-cc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGG----------VWKVRVHLPEHYPFKSPSIGFMNK-MY   75 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~yP~~pP~v~f~t~-i~   75 (126)
                      .++||++|+++|++..  ....+|++.|.+.+.||++|+|+||          .|+++|.||++||.+||+|+|.+. ++
T Consensus        33 w~~RL~eE~k~L~k~v--~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~  110 (172)
T 2z6o_A           33 WVQRLKEEYQSLIRYV--ENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK  110 (172)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred             HHHHHHHHHHHHHHHh--ccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence            3999999999999831  1112799999999999999999999          999999999999999999999998 99


Q ss_pred             ccccccccceeee----Cc---eeeEEEEeCCCC
Q psy11956         76 HPNIDEVSAVFYY----GG---VWKVRVHLPEHY  102 (126)
Q Consensus        76 Hpnv~~~~g~ic~----~~---~w~p~~~~~~il  102 (126)
                      ||||+ .+|+||+    ..   .|+|++++..+|
T Consensus       111 hpnmY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL  143 (172)
T 2z6o_A          111 TAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLM  143 (172)
T ss_dssp             CSSBC-TTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred             CCCCC-CCCcEechhhccccccccCCccCHHHHH
Confidence            99999 5999999    22   444999888764

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.68  E-value=1.2e-17  Score=113.41  Aligned_cols=90  Identities=12%  Similarity=0.096  Sum_probs=76.3

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCC----------EEEEEEEcCCCCCCCCCceeEeee-c
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGG----------VWKVRVHLPEHYPFKSPSIGFMNK-M   74 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~~p~~yP~~pP~v~f~t~-i   74 (126)
                      ...+||.+||+.|.+--.  ...++-.+|...+.|++||+|+|+          .|+++++||.+||..||+++|.+. .
T Consensus        34 ~w~~RlkeEy~alI~yv~--~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldg  111 (168)
T 3kpa_A           34 KWTARLKEEYASLITYVE--HNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEG  111 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHH--hcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccC
Confidence            467999999999865111  112566789999999999999999          899999999999999999999995 8


Q ss_pred             cccccccccceeeeCceeeEEEEe
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHL   98 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~   98 (126)
                      +|+|++ .+|+||+...|+|.++-
T Consensus       112 kt~kmY-r~GkICLdIhwkPlW~~  134 (168)
T 3kpa_A          112 KTVKMY-RGGKICMTTHFFPLWAR  134 (168)
T ss_dssp             TCSSEE-TTTEECCCTTHHHHHHH
T ss_pred             cCcccc-CCCcEEeccccchhhHh
Confidence            999999 59999998888887643

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.56  E-value=4.4e-16  Score=108.08  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHhc-CCCccc------ccCcccEEEEEECCCCCCCCCCE---EEEEEEcCCCCCCCCCceeEee-----
Q psy11956          8 NRRMNIDVIKLIES-KHEGTT------LKGLKEFCVKFFGPRDTPYEGGV---WKVRVHLPEHYPFKSPSIGFMN-----   72 (126)
Q Consensus         8 ~~RL~~e~~~l~~~-~~~~~~------~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~~p~~yP~~pP~v~f~t-----   72 (126)
                      .+|..+|+.++.+. +.....      .++..++.+.+.|.-..+|+|+.   |.+.|-||++||++||.|.|.+     
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m  109 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  109 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence            35667787777543 221111      15666788888888889999998   8899999999999999998865     


Q ss_pred             --e---cc-ccccccccceeee--CceeeE-EEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         73 --K---MY-HPNIDEVSAVFYY--GGVWKV-RVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        73 --~---i~-Hpnv~~~~g~ic~--~~~w~p-~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                        +   |+ |||||. +|++|+  -..|++ +.++.+++      ..+++++-+||.|.
T Consensus       110 ~~~~~~I~~hpnVD~-~G~I~lpyL~~W~p~~s~L~~ll------~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          110 NTISSSLPIQEYIDS-NGWIALPILHAWDPAAMNLIMVV------QELMSLLHEPPQDQ  161 (162)
T ss_dssp             TTSCTTSTHHHHBCT-TSBBCCGGGGSCCGGGCCHHHHH------HHHHHTTSCCCCCC
T ss_pred             cccccccCCCCCCCC-CCcEeCcccccCCCCcCcHHHHH------HHHHHHhcCCCCCC
Confidence              1   77 999995 999999  467999 68999996      88999999999885

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=98.80  E-value=2.3e-09  Score=73.04  Aligned_cols=67  Identities=21%  Similarity=0.447  Sum_probs=53.3

Q ss_pred             cCcccEEEEEECCCCCCCCCCEEEE--EEEcCCCCCCCCCceeEeee------ccccccccccceeee--CceeeE-EEE
Q psy11956         29 KGLKEFCVKFFGPRDTPYEGGVWKV--RVHLPEHYPFKSPSIGFMNK------MYHPNIDEVSAVFYY--GGVWKV-RVH   97 (126)
Q Consensus        29 ~~~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~yP~~pP~v~f~t~------i~Hpnv~~~~g~ic~--~~~w~p-~~~   97 (126)
                      .++..|..+|.    .+|+|+.|.+  .|-||++||++||.| |.++      ..|+|||. +|++|+  -..|++ ..+
T Consensus        51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~~W~~~~sn  124 (146)
T 3obq_A           51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSD  124 (146)
T ss_dssp             CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHHTCCTTTCC
T ss_pred             heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEecccccccCCCCCC
Confidence            56778888887    6799999985  888999999999999 5554      48999995 999999  355987 444


Q ss_pred             eCCC
Q psy11956         98 LPEH  101 (126)
Q Consensus        98 ~~~i  101 (126)
                      +.++
T Consensus       125 L~~l  128 (146)
T 3obq_A          125 LLGL  128 (146)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=98.60  E-value=3.2e-08  Score=66.67  Aligned_cols=52  Identities=17%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|+
T Consensus        42 w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~   93 (138)
T 1jat_B           42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE   93 (138)
T ss_dssp             EEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             EEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCE
Confidence            3344444556666688899999999999999999999999999999997784

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=98.56  E-value=5.4e-08  Score=66.29  Aligned_cols=52  Identities=37%  Similarity=0.704  Sum_probs=44.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|.
T Consensus        34 w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~   85 (149)
T 1fxt_A           34 LKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA   85 (149)
T ss_dssp             EEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCC
T ss_pred             EEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCe
Confidence            4445555667777788999999999999999999999999999999987774

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=98.52  E-value=6.5e-08  Score=66.21  Aligned_cols=52  Identities=54%  Similarity=1.048  Sum_probs=44.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+..+|.
T Consensus        31 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~   82 (152)
T 2onu_A           31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGS   82 (152)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCB
T ss_pred             EEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCe
Confidence            4445555667777788999999999999999999999999999999977774

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=98.51  E-value=6.2e-08  Score=69.87  Aligned_cols=52  Identities=37%  Similarity=0.704  Sum_probs=46.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+..+|.
T Consensus        35 w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~   86 (215)
T 1tte_A           35 LKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA   86 (215)
T ss_dssp             EEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSC
T ss_pred             cEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCE
Confidence            5556666778888899999999999999999999999999999999987774

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=98.50  E-value=7.3e-08  Score=66.33  Aligned_cols=52  Identities=35%  Similarity=0.805  Sum_probs=43.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|+
T Consensus        43 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~   94 (159)
T 2bep_A           43 LRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA   94 (159)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCE
Confidence            3344444556666688899999999999999999999999999999987774

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=98.49  E-value=7.8e-08  Score=68.57  Aligned_cols=52  Identities=35%  Similarity=0.805  Sum_probs=44.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|.+.+|||||+..+|+
T Consensus        40 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~   91 (201)
T 3k9o_A           40 LRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA   91 (201)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCe
Confidence            4445555667777789999999999999999999999999999999987884

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=98.49  E-value=7.8e-08  Score=69.40  Aligned_cols=51  Identities=31%  Similarity=0.704  Sum_probs=42.7

Q ss_pred             ccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        76 Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      +.-|.++.|+.+.++.|...+.+...||++||.+.|++.+|||||+..+|.
T Consensus        56 ~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~  106 (216)
T 2pwq_A           56 VGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA  106 (216)
T ss_dssp             EEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCE
Confidence            334444556666688899999999999999999999999999999987884

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=98.49  E-value=7.9e-08  Score=66.88  Aligned_cols=51  Identities=29%  Similarity=0.645  Sum_probs=43.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        36 W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~-~G~   86 (169)
T 1ayz_A           36 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NGE   86 (169)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSB
T ss_pred             ceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCC-CCe
Confidence            444455566777778899999999999999999999999999999998 774

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=98.48  E-value=9.4e-08  Score=66.65  Aligned_cols=52  Identities=46%  Similarity=0.910  Sum_probs=43.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+..+|.
T Consensus        40 w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~   91 (171)
T 1yf9_A           40 FWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS   91 (171)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence            3444445566666688899999999999999999999999999999976774

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=98.45  E-value=1.3e-07  Score=64.86  Aligned_cols=51  Identities=33%  Similarity=0.800  Sum_probs=43.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+..|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+ .+|.
T Consensus        37 w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~~G~   87 (155)
T 1jat_A           37 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-RLGR   87 (155)
T ss_dssp             EEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-TTCC
T ss_pred             EEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC-CCCE
Confidence            44555556677777889999999999999999999999999999999 4774

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=98.45  E-value=1.2e-07  Score=64.73  Aligned_cols=51  Identities=31%  Similarity=0.677  Sum_probs=43.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+. +|+
T Consensus        36 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   86 (152)
T 2aak_A           36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA-DGS   86 (152)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSB
T ss_pred             EEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCC-CCE
Confidence            444555566777778899999999999999999999999999999998 774

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=98.44  E-value=1.4e-07  Score=65.10  Aligned_cols=50  Identities=16%  Similarity=0.345  Sum_probs=41.2

Q ss_pred             cccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        77 pnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|+
T Consensus        63 ~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~  112 (160)
T 2a4d_A           63 GMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV  112 (160)
T ss_dssp             EEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             EEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCE
Confidence            33344455555678899999999999999999999999999999976774

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=98.44  E-value=1.3e-07  Score=67.13  Aligned_cols=52  Identities=29%  Similarity=0.686  Sum_probs=44.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.|.|++.++||||+..+|.
T Consensus        77 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~  128 (193)
T 2f4z_A           77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA  128 (193)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCE
Confidence            4555555667777788999999999999999999999999999999977774

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=98.43  E-value=1.5e-07  Score=65.13  Aligned_cols=51  Identities=29%  Similarity=0.640  Sum_probs=43.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        37 w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~   87 (165)
T 2ucz_A           37 WDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGE   87 (165)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT-TSB
T ss_pred             EEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC-CCc
Confidence            444455556777778899999999999999999999999999999997 563

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=98.42  E-value=1.5e-07  Score=66.03  Aligned_cols=52  Identities=62%  Similarity=1.108  Sum_probs=43.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+..+|.
T Consensus        53 W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~  104 (179)
T 2z5d_A           53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT  104 (179)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             eEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence            3344444566666688899999999999999999999999999999987774

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=65.75  Aligned_cols=52  Identities=15%  Similarity=0.356  Sum_probs=44.3

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+..+|+
T Consensus        71 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~  122 (170)
T 2hlw_A           71 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV  122 (170)
T ss_dssp             EEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCB
T ss_pred             eEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCE
Confidence            4455555667777788999999999999999999999999999999966774

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=98.42  E-value=1.5e-07  Score=64.97  Aligned_cols=51  Identities=27%  Similarity=0.549  Sum_probs=44.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        36 w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~-~G~   86 (164)
T 3h8k_A           36 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGR   86 (164)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TSB
T ss_pred             EEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCC-CCc
Confidence            455555667777778999999999999999999999999999999986 763

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=98.42  E-value=1.8e-07  Score=65.63  Aligned_cols=51  Identities=27%  Similarity=0.703  Sum_probs=43.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        62 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~  112 (179)
T 1i7k_A           62 WVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QGN  112 (179)
T ss_dssp             EEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TCB
T ss_pred             cEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc-CCe
Confidence            444555567777778899999999999999999999999999999998 673

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=98.42  E-value=1.6e-07  Score=65.40  Aligned_cols=52  Identities=23%  Similarity=0.644  Sum_probs=42.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|+
T Consensus        55 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~  106 (169)
T 1yrv_A           55 WEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ  106 (169)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCC
T ss_pred             ceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCe
Confidence            3334444556666688899999999999999999999999999999666874

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=98.42  E-value=1.6e-07  Score=64.12  Aligned_cols=51  Identities=41%  Similarity=0.867  Sum_probs=44.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        36 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~   86 (151)
T 4gpr_A           36 WTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGV   86 (151)
T ss_dssp             EEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             EEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC-CCE
Confidence            445555567777778999999999999999999999999999999997 773

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=98.41  E-value=1.7e-07  Score=63.90  Aligned_cols=51  Identities=37%  Similarity=0.865  Sum_probs=43.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||+. +|+
T Consensus        36 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   86 (150)
T 1z2u_A           36 WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGS   86 (150)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC-CCe
Confidence            445555566777778899999999999999999999999999999997 674

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=98.40  E-value=1.7e-07  Score=64.23  Aligned_cols=49  Identities=31%  Similarity=0.715  Sum_probs=41.1

Q ss_pred             cccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        77 pnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        43 ~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   91 (156)
T 2e2c_A           43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGN   91 (156)
T ss_dssp             EEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             EEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc-Cce
Confidence            3344445666668889999999999999999999999999999998 674

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=98.40  E-value=1.8e-07  Score=63.65  Aligned_cols=51  Identities=39%  Similarity=0.861  Sum_probs=44.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+. +|+
T Consensus        33 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   83 (149)
T 2r0j_A           33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGR   83 (149)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCB
T ss_pred             EEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-CCE
Confidence            455555667777778999999999999999999999999999999997 463

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=98.40  E-value=1.9e-07  Score=63.89  Aligned_cols=51  Identities=39%  Similarity=0.845  Sum_probs=43.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        37 w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   87 (154)
T 2c2v_B           37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LGR   87 (154)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCB
T ss_pred             EEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc-CCe
Confidence            444555556777778899999999999999999999999999999996 573

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=98.39  E-value=1.9e-07  Score=65.65  Aligned_cols=51  Identities=37%  Similarity=0.834  Sum_probs=43.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        40 W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~   90 (183)
T 3rz3_A           40 WEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGD   90 (183)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT-TSB
T ss_pred             eeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC-CCc
Confidence            444455556777778899999999999999999999999999999997 773

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=98.39  E-value=2.1e-07  Score=63.95  Aligned_cols=49  Identities=16%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             cccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        77 pnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        59 ~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~  107 (156)
T 2q0v_A           59 CTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN-CGR  107 (156)
T ss_dssp             EEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCT-TSB
T ss_pred             EEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCcc-CCe
Confidence            3334445556667889999999999999999999999999999997 463

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=98.39  E-value=2.1e-07  Score=64.01  Aligned_cols=51  Identities=27%  Similarity=0.626  Sum_probs=42.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+.. |+
T Consensus        45 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~-G~   95 (158)
T 1zdn_A           45 LQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN-GE   95 (158)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT-SB
T ss_pred             eeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCC-CE
Confidence            3444444566666688899999999999999999999999999999974 63

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=98.38  E-value=2.3e-07  Score=61.44  Aligned_cols=51  Identities=24%  Similarity=0.565  Sum_probs=43.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccC-CCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l-~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.+ +||||+. +|+
T Consensus        38 w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~   89 (125)
T 2fo3_A           38 WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGD   89 (125)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TSB
T ss_pred             hheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC-CCE
Confidence            44455556677777889999999999999999999999996 9999997 673

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=98.38  E-value=2.2e-07  Score=64.57  Aligned_cols=51  Identities=41%  Similarity=0.800  Sum_probs=43.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        36 w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~   86 (169)
T 1yh2_A           36 LRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGR   86 (169)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             EEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc-CCe
Confidence            444555566777778899999999999999999999999999999995 673

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=98.37  E-value=2.4e-07  Score=64.12  Aligned_cols=51  Identities=29%  Similarity=0.664  Sum_probs=43.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        47 W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~-~G~   97 (163)
T 3rcz_B           47 WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGT   97 (163)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TSB
T ss_pred             EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCC-CCc
Confidence            455555667777778999999999999999999999999999999995 773

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=98.37  E-value=2.3e-07  Score=64.33  Aligned_cols=51  Identities=39%  Similarity=0.862  Sum_probs=42.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+. +|.
T Consensus        53 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~-~G~  103 (166)
T 2ayv_A           53 WQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS-QGA  103 (166)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCB
T ss_pred             eeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC-CCe
Confidence            344444456666678889999999999999999999999999999997 673

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=98.37  E-value=2.4e-07  Score=64.19  Aligned_cols=51  Identities=37%  Similarity=0.866  Sum_probs=42.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        51 W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~-~G~  101 (165)
T 2c4o_A           51 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGS  101 (165)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCB
T ss_pred             eEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC-CCe
Confidence            344445556666678889999999999999999999999999999997 673

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=98.37  E-value=2.3e-07  Score=63.70  Aligned_cols=51  Identities=33%  Similarity=0.690  Sum_probs=43.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        41 w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   91 (157)
T 2gjd_A           41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGT   91 (157)
T ss_dssp             EEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCT-TSB
T ss_pred             EEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCC-CCc
Confidence            455555566777778899999999999999999999999999999995 673

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=98.36  E-value=3.1e-07  Score=61.79  Aligned_cols=51  Identities=22%  Similarity=0.578  Sum_probs=42.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCC--CCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY--HPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~--~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++  ||||+. +|+
T Consensus        56 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~-~G~  108 (136)
T 2a7l_A           56 WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGH  108 (136)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT-TCB
T ss_pred             eEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCC-CCe
Confidence            344444556667778899999999999999999999999999  999997 774

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=98.36  E-value=3.2e-07  Score=61.63  Aligned_cols=51  Identities=24%  Similarity=0.578  Sum_probs=42.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccC-CCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l-~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++.+ +||||+. +|+
T Consensus        52 W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~  103 (136)
T 2h2y_A           52 WIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS-NGD  103 (136)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCT-TCC
T ss_pred             cEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCC-CCE
Confidence            44445555677777889999999999999999999999996 9999997 774

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=98.36  E-value=2.5e-07  Score=68.20  Aligned_cols=52  Identities=35%  Similarity=0.805  Sum_probs=43.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.+.|.+.+|||||+..+|.
T Consensus        92 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~  143 (253)
T 3e46_A           92 LRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA  143 (253)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCe
Confidence            3344444566666688899999999999999999999999999999987874

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=98.34  E-value=3.2e-07  Score=63.94  Aligned_cols=51  Identities=31%  Similarity=0.819  Sum_probs=41.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        50 W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~-~G~  100 (172)
T 2awf_A           50 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGD  100 (172)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCB
T ss_pred             cEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCC-CCc
Confidence            333444455666668889999999999999999999999999999997 563

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=98.33  E-value=3.3e-07  Score=63.17  Aligned_cols=51  Identities=27%  Similarity=0.579  Sum_probs=42.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+. +|+
T Consensus        44 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   94 (161)
T 2grr_A           44 WECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGT   94 (161)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT-TSB
T ss_pred             EEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCC-CCe
Confidence            444455556666678889999999999999999999999999999995 674

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=98.33  E-value=2.4e-07  Score=64.56  Aligned_cols=52  Identities=27%  Similarity=0.594  Sum_probs=44.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeec-cCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMN-KMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~-~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|++ .++||||+..+|+
T Consensus        50 w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~  102 (172)
T 2y9m_A           50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE  102 (172)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTE
T ss_pred             EEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCE
Confidence            444555566777778899999999999999999999999 9999999765773

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=98.32  E-value=3.2e-07  Score=62.84  Aligned_cols=44  Identities=41%  Similarity=0.832  Sum_probs=38.6

Q ss_pred             ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      +.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        43 P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~   86 (155)
T 1wzv_A           43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQ   86 (155)
T ss_dssp             CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC-CCe
Confidence            35556667889999999999999999999999999999997 774

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=98.32  E-value=5.1e-07  Score=62.57  Aligned_cols=51  Identities=20%  Similarity=0.561  Sum_probs=45.3

Q ss_pred             cccccccccceeee--CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYY--GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~--~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.  ++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        52 w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~  104 (167)
T 4ds2_A           52 WILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGG  104 (167)
T ss_dssp             EEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCT-TSC
T ss_pred             EEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCC-CCE
Confidence            56666677888888  8999999999999999999999999999999995 774

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=98.30  E-value=4.2e-07  Score=64.56  Aligned_cols=51  Identities=31%  Similarity=0.679  Sum_probs=42.5

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.|.|++.++||||+. +|.
T Consensus        80 W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~  130 (194)
T 3bzh_A           80 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS-QGV  130 (194)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT-TCB
T ss_pred             ceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC-CCc
Confidence            344444556666678889999999999999999999999999999997 573

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=98.26  E-value=7.6e-07  Score=60.87  Aligned_cols=44  Identities=43%  Similarity=0.922  Sum_probs=39.1

Q ss_pred             ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      +.|+.+.++.|...+.+.+.||++||.+.|++.++||||+. +|.
T Consensus        41 P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   84 (154)
T 1c4z_D           41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQ   84 (154)
T ss_dssp             CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCB
T ss_pred             CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC-CCE
Confidence            35666678889999999999999999999999999999997 674

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=98.22  E-value=8.2e-07  Score=61.15  Aligned_cols=44  Identities=30%  Similarity=0.599  Sum_probs=39.1

Q ss_pred             ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      +.|+.+.++.|...+.+.+.||++||.+.|.+.++||||+. +|.
T Consensus        43 p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~   86 (160)
T 1y8x_A           43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGN   86 (160)
T ss_dssp             CSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCB
T ss_pred             CCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC-CCe
Confidence            45666668889999999999999999999999999999997 573

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=98.21  E-value=8.5e-07  Score=62.23  Aligned_cols=45  Identities=29%  Similarity=0.564  Sum_probs=39.8

Q ss_pred             cccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         81 EVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        81 ~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        62 gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~  106 (180)
T 2nvu_C           62 CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGN  106 (180)
T ss_dssp             CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TSB
T ss_pred             CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC-CCc
Confidence            356677778899999999999999999999999999999997 563

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=98.15  E-value=1.3e-06  Score=60.44  Aligned_cols=43  Identities=33%  Similarity=0.799  Sum_probs=37.3

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .|+.+.++.|...+.+...||++||.+.|++.++||||+. +|+
T Consensus        54 ~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~   96 (167)
T 3fn1_B           54 DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGE   96 (167)
T ss_dssp             SSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT-TCC
T ss_pred             CCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC-CCE
Confidence            3445557889999999999999999999999999999995 774

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.09  E-value=2.2e-06  Score=66.86  Aligned_cols=51  Identities=37%  Similarity=0.866  Sum_probs=45.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||+. +|.
T Consensus        35 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~   85 (399)
T 4ddg_A           35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGS   85 (399)
T ss_dssp             EEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT-TCB
T ss_pred             EEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC-CCe
Confidence            555666667888889999999999999999999999999999999997 773

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=98.06  E-value=2.7e-06  Score=60.17  Aligned_cols=43  Identities=30%  Similarity=0.656  Sum_probs=38.1

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      .++.+.++.|...+.+...||++||.+.|++.++||||+. +|.
T Consensus        73 ~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~  115 (190)
T 3o2u_A           73 DEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL-KGN  115 (190)
T ss_dssp             SSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCT-TSB
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCC-CCe
Confidence            4456668889999999999999999999999999999997 773

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=97.97  E-value=5.5e-06  Score=62.93  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=45.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeecc-----CCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNK-----MYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~-----l~~pn~~~~~g~  126 (126)
                      |+.-|.++.|+.+.++.|...+.+...||++||.|.|++.     +|||||+. +|.
T Consensus       112 w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~-~G~  167 (323)
T 3ceg_A          112 MKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGK  167 (323)
T ss_dssp             EEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCT-TCB
T ss_pred             cEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCc-CCe
Confidence            5666677788888899999999999999999999999998     99999995 773

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=97.75  E-value=2.6e-05  Score=53.96  Aligned_cols=50  Identities=14%  Similarity=0.305  Sum_probs=41.9

Q ss_pred             ccccccccceeeeCc----------eeeEEEEeCCCCCCCCCeeeeecc-CCCCCCCCCCCC
Q psy11956         76 HPNIDEVSAVFYYGG----------VWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDEVSGE  126 (126)
Q Consensus        76 Hpnv~~~~g~ic~~~----------~w~p~~~~~~ilp~~~p~~~~~~~-l~~pn~~~~~g~  126 (126)
                      +.-+.+++|+.+.++          .|...+.+.+.||.+||.+.|.++ ++|||+|. +|+
T Consensus        59 ~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~-~G~  119 (172)
T 2z6o_A           59 FRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYR-GGK  119 (172)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCT-TSB
T ss_pred             EEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCC-CCc
Confidence            333445677777766          899999999999999999999998 99999997 674

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=97.31  E-value=5.7e-05  Score=53.11  Aligned_cols=35  Identities=11%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             ceeeEEEEeCCCCCCCCCeeeeeccCCCC-CCCCCCC
Q psy11956         90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHP-NIDEVSG  125 (126)
Q Consensus        90 ~~w~p~~~~~~ilp~~~p~~~~~~~l~~p-n~~~~~g  125 (126)
                      +.|...+.+.+.||++||.+.|.+.++|| ||+. +|
T Consensus        89 g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~-~G  124 (186)
T 1zuo_A           89 EYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG-GG  124 (186)
T ss_dssp             CSEEEEEECCTTTTSSCCEEEEEESCEESTTBCG-GG
T ss_pred             eEEEEEEECCCCCCCCCCeEEEeCCccCCCccCC-CC
Confidence            67999999999999999999999999999 6985 66

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=97.29  E-value=0.0002  Score=50.39  Aligned_cols=48  Identities=23%  Similarity=0.468  Sum_probs=38.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||.-|.++.|+.+.++.|...+.+...||++||.|.|++.  ||+++. +|
T Consensus        46 W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~-~G   93 (187)
T 2f4w_A           46 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC-NT   93 (187)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT-TS
T ss_pred             eEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc-CC
Confidence            4444445566666788899999999999999999999998  888876 45

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.74  E-value=0.0076  Score=39.20  Aligned_cols=67  Identities=12%  Similarity=0.118  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-c-CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-K-GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-~-~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ...+...|+..|+.--...+.. + ....+.+.+..-.+..-+.-.+.+.|.+|++||.+||.+.+.+.
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   79 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC
Confidence            4566678888887655444433 2 24566666653222222334688999999999999999988763

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=96.20  E-value=0.0033  Score=42.75  Aligned_cols=44  Identities=18%  Similarity=0.391  Sum_probs=37.8

Q ss_pred             ccceeeeCc----------eeeEEEEeCCCCCCCCCeeeeecc-CCCCCCCCCCCC
Q psy11956         82 VSAVFYYGG----------VWKVRVHLPEHYPFKSPSIGFMNK-MYHPNIDEVSGE  126 (126)
Q Consensus        82 ~~g~ic~~~----------~w~p~~~~~~ilp~~~p~~~~~~~-l~~pn~~~~~g~  126 (126)
                      ++|+.+.|+          .|...+++..-||.+||.+.|.++ .+|+++|. +|+
T Consensus        67 ~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr-~Gk  121 (168)
T 3kpa_A           67 PQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYR-GGK  121 (168)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEET-TTE
T ss_pred             CCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccC-CCc
Confidence            567777666          788999999999999999999996 89999987 663

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.088  Score=34.47  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHhcCCCcccc-c---------CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL-K---------GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~-~---------~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ..+...|+..|+.--...+.. +         ....+.+.+....+ .-..-.+.+.+.+|.+||..+|.+.+.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            344566777776544333322 2         24568888874322 11234788999999999999999998653

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.84  E-value=0.061  Score=34.77  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-c-----CcccEEEEEECCCCCCC--CCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-K-----GLKEFCVKFFGPRDTPY--EGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-~-----~~~~w~~~i~gp~~t~y--~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ...+...|+..|+.--...+.. +     ....+.+.+....+..-  ..-.+.+.|.+|++||..+|.+...+.
T Consensus         9 ~~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A            9 EDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CCCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            3456778999887755444333 2     12334444542222111  124788999999999999999998874

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.10  E-value=0.077  Score=34.35  Aligned_cols=65  Identities=14%  Similarity=0.061  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHHhcCCC--cccc-c----CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956          7 GNRRMNIDVIKLIESKHE--GTTL-K----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~--~~~~-~----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      ...+...|+..|+.--..  .+.. +    +...+.+.+... +..-..-.+.+.+.+|.+||..+|.+.+.+
T Consensus         8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A            8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            344566788888754332  2322 1    134677777632 211112478899999999999999998764

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=94.98  E-value=0.032  Score=38.25  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             eeEEEEeCCCCCCCCCeeeeec----------cCC-CCCCCCCCCC
Q psy11956         92 WKVRVHLPEHYPFKSPSIGFMN----------KMY-HPNIDEVSGE  126 (126)
Q Consensus        92 w~p~~~~~~ilp~~~p~~~~~~----------~l~-~pn~~~~~g~  126 (126)
                      +.-.+.+.+.||++||++.+..          .++ |||||+ +|+
T Consensus        83 ~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~-~G~  127 (162)
T 3r3q_A           83 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGW  127 (162)
T ss_dssp             EEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCT-TSB
T ss_pred             ccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCC-CCc
Confidence            6678889999999999998865          167 999998 673

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=94.59  E-value=0.25  Score=32.08  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-cC--------cccEEEEEECCCC-C-CCCCCEEEEEEEcCCCCCCCCCceeEee
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-KG--------LKEFCVKFFGPRD-T-PYEGGVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-~~--------~~~w~~~i~gp~~-t-~y~gg~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      ...+...|+..|+.--...+.. ++        ...+.+.+. +.+ . .-..-.+.+.|.||++||..+|.+.+.+
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           11 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            3455667888887654444333 21        345667776 222 1 0012468899999999999999998854

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=92.38  E-value=0.49  Score=31.46  Aligned_cols=24  Identities=25%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCCCCCCceeEeee
Q psy11956         50 VWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus        50 ~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      .+.+.|.+|.+||..+|.+.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            578899999999999999988764

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=91.55  E-value=0.39  Score=32.23  Aligned_cols=36  Identities=22%  Similarity=0.607  Sum_probs=27.0

Q ss_pred             Cceee--EEEEeCCCCCCCCCeeeeecc------CCCCCCCCCCCC
Q psy11956         89 GGVWK--VRVHLPEHYPFKSPSIGFMNK------MYHPNIDEVSGE  126 (126)
Q Consensus        89 ~~~w~--p~~~~~~ilp~~~p~~~~~~~------l~~pn~~~~~g~  126 (126)
                      +..++  -.+-+.+.||++||++ ++..      ..|+|||. +|+
T Consensus        66 g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~  109 (146)
T 3obq_A           66 GNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGK  109 (146)
T ss_dssp             SCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCB
T ss_pred             CccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCC
Confidence            44454  4677899999999999 5544      47999998 773

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=88.23  E-value=0.45  Score=31.85  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             EEEEEEEcCCCCCCCCCceeEeee
Q psy11956         50 VWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus        50 ~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      .+.+.|.+|.+||..+|.+.....
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC
Confidence            789999999999999999987764

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=82.46  E-value=3  Score=28.97  Aligned_cols=59  Identities=15%  Similarity=0.022  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          9 RRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      .+|.+|+.++-=+....+ ..++....+.+..     =.|....++|.++.+||.++|.+...-+
T Consensus         4 ~~li~Ei~~iGW~~l~~i-d~~~~~i~l~~~D-----~~gR~H~l~v~l~~~yp~~~P~~~~DlP   62 (186)
T 3zqs_A            4 SSLIEEIGTLGWDKLVYA-DTCFSTIKLKAED-----ASGREHLITLKLKAKYPAESPDYFVDFP   62 (186)
T ss_dssp             CSHHHHHHHHCGGGEEEE-CTTSSEEEEEEEC-----TTSCEEEEEEECCTTTTTSCCEEECCCS
T ss_pred             HHHHHHHHHhCCceeeee-cCCccEEEEEEEe-----CCCCeEEEEEEECCCCCCCCCeeEEcCC
Confidence            467888888844333332 2567777777773     2367788999999999999998766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-21
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	5e-17
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	3e-11
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	5e-06
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	7e-11
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-05
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-10
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	6e-10
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	9e-10
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-09
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-04
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-09
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	2e-09
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-09
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	1e-08
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	0.001
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-08
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-04
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-08
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	3e-08
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	4e-08
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	5e-08
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	8e-04
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	5e-08
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	2e-04
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-08
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	9e-08
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-07
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-07
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	3e-07
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	3e-07
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	2e-06
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-06
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	0.004
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	3e-06
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-05
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-04
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	7e-04

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 70.1 bits (171), Expect = 5e-17
 Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 8   NRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPS 67
           NRR  +D ++L  S  +      + EF V+F GP  TPYE G W + V LP  YPFKSPS
Sbjct: 2   NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 61

Query: 68  IGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           IGF N++ HPN+DE S           +   P +       +     + +PN  +
Sbjct: 62  IGFCNRILHPNVDERSGSVCLD--VINQTWTPMYQLENIFDVFLPQLLRYPNPSD 114

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 3e-11
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          L  + V   GP DT YEGGV+K  +  P+ YP + P + F+ +++HPN+D+
Sbjct: 29 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 79

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           Y GGV+K  +  P+ YP + P + F+ +++HPN+D+
Sbjct: 44  YEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 79

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 54.0 bits (129), Expect = 7e-11
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
          ++   RR+  D  ++ E    G +       +  +     GP DTPYE G +++ +   E
Sbjct: 1  STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60

Query: 60 HYPFKSPSIGFMNKMYHPNIDEVSAVFY 87
           YP K P + F+++M+HPN+     +  
Sbjct: 61 EYPNKPPHVKFLSEMFHPNVYANGEICL 88

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 64  KSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
           +    G        N+   +A+        Y  G +++ +   E YP K P + F+++M+
Sbjct: 17  EDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF 76

Query: 117 HPNIDE 122
           HPN+  
Sbjct: 77  HPNVYA 82

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-10
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 5   SAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
           S   +R+  ++ ++        +       + E+     GP  + YEGGV+ + +     
Sbjct: 1   STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 60

Query: 61  YPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI 120
           YPFK P + F  ++YH NI+    +        ++ +           +   + +   N 
Sbjct: 61  YPFKPPKVTFRTRIYHCNINSQGVICLD----ILKDNWSPALTISKVLLSICSLLTDCNP 116

Query: 121 DE 122
            +
Sbjct: 117 AD 118

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 51.3 bits (122), Expect = 6e-10
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+  ++  L        +       L  +     GP ++PY+GGV+ + +H P  YPFK
Sbjct: 4  KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 65 SPSIGFMNKMYHPNIDE 81
           P + F  ++YHPNI+ 
Sbjct: 64 PPKVAFTTRIYHPNINS 80

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 9e-10
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLKG---LKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          ASA   R+  D+ +L   K    +      L  F +    P +  Y+ G +     + + 
Sbjct: 1  ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQG 59

Query: 61 YPFKSPSIGFMNKMYHPNIDEVSAVFYY 88
          YP   P +     +YHPNID    V   
Sbjct: 60 YPHDPPKVKCETMVYHPNIDLEGNVCLN 87

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 51.3 bits (122), Expect = 1e-09
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 14/127 (11%)

Query: 9   RRMNIDVIKLIESKHEGTTLKGLKE-----FCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
           +R+  ++ +LI+    G       E     +     GP DTPY  GV+  ++  P+ YP 
Sbjct: 6   KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 65

Query: 64  KSPSIGFMNKMYHPNIDE--VSAVFYYGGVWKVRVHLPEHYPFKSPS-------IGFMNK 114
             P + F   + HPNI       +                    SP        +  M+ 
Sbjct: 66  SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 125

Query: 115 MYHPNID 121
           +  PNI+
Sbjct: 126 LSEPNIE 132

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
            Y  GV+  ++  P+ YP   P + F   + HPNI  
Sbjct: 47  PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 83

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 50.5 bits (120), Expect = 1e-09
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 4  ASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPE 59
          A++  +R+  +  KL+     G T +     L+ F V   GP  +PYE G++++ ++LP+
Sbjct: 1  AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60

Query: 60 HYPFKSPSIGFMNKMYHPNIDE 81
           YP ++P + F+ K+YHPNID 
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDR 82

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 50.5 bits (120), Expect = 2e-09
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 81
          + ++ V   GP DT YEGG +K  +  P  YP K P + F+++++HPNID+
Sbjct: 30 IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK 80

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 1  MSSASAGNRRMNIDVIKLIESKHEGTTLK------GLKEFCVKFFGPRDTPYEGGVWKVR 54
          M+S     +R+  +++ L      G TL        + ++ V   G   T YEG  +++ 
Sbjct: 1  MASMQ---KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 57

Query: 55 VHLPEHYPFKSPSIGFMNK--MYHPNIDE 81
                YPF SP + F  +    HP++  
Sbjct: 58 FKFSSRYPFDSPQVMFTGENIPVHPHVYS 86

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 30  GLKEFCVKFFGPRDTPYEGGVWK--VRVHLPEHYPFKSPSI-----GFMNKMYHPNID 80
           G     +   G    PY G  +   + + L + YP+  P         M      ++D
Sbjct: 45  GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVD 102

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.001
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 7/44 (15%)

Query: 85  VFYYGGVWK--VRVHLPEHYPFKSPSI-----GFMNKMYHPNID 121
           V Y G  +   + + L + YP+  P         M      ++D
Sbjct: 59  VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVD 102

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 31 LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID 80
          L  +     GP  T YE  ++ +++     YP   P + F+ K+    ++
Sbjct: 38 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 87

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
           Y   ++ +++     YP   P + F+ K+    ++  +G 
Sbjct: 53  YENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 92

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
           L  +     G + TP+EGG++K+R+   + YP   P   F   ++HPN+     V     
Sbjct: 36  LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSL--S 93

Query: 91  VWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE 122
           + +           K   +G    +  PNI +
Sbjct: 94  ILEEDKDWRPAITIKQILLGIQELLNEPNIQD 125

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 47.1 bits (111), Expect = 3e-08
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 23/135 (17%)

Query: 1   MSSASAGN---RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKV 53
           M+++   +   +R+  ++  L+ S   G T       L ++     GP+DT YE   +K+
Sbjct: 1   MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKL 60

Query: 54  RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFY------YGGVWKVRVHLPEHYPFKSP 107
            +  P  YP+K P + F    +HPN+D+   +        +   + VR  L         
Sbjct: 61  TLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTIL--------- 111

Query: 108 SIGFMNKMYHPNIDE 122
            +   + +  PN   
Sbjct: 112 -LSLQSLLGEPNNAS 125

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-08
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 8   NRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
            +R+  +++ L+ S  +G +       L ++     G   T YE   +K+ +  P  YP+
Sbjct: 3   GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62

Query: 64  KSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYP---FKSPSIGFMNKMYHPNI 120
            +P++ F+   YHPN+          G   + +   +       ++  +   + +  PNI
Sbjct: 63  NAPTVKFLTPCYHPNV-------DTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNI 115

Query: 121 DE 122
           D 
Sbjct: 116 DS 117

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 46.7 bits (110), Expect = 5e-08
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
           +  +     GP  TPYEGG + + + +P  YP+  P + F+ K++HPN      +    G
Sbjct: 43  IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPN------ISSQTG 96

Query: 91  VWKVRVHLPEHYPFKSPS---IGFMNKMYHPNIDE 122
              + +   E  P  +     +     +  P   +
Sbjct: 97  AICLDILKHEWSPALTIRTALLSIQAMLADPVPTD 131

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 35.2 bits (80), Expect = 8e-04
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 54  RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF-------YYGGVWKVRVHLPEHYPFKS 106
           R H  E     S S G   ++   +I              Y GG + + + +P  YP+  
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 77

Query: 107 PSIGFMNKMYHPNIDEVSGE 126
           P + F+ K++HPNI   +G 
Sbjct: 78  PKMKFVTKIWHPNISSQTGA 97

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (109), Expect = 5e-08
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTL-------KGLKEFCVKFFGPRDTPYEGGVWKV 53
           M++ +   +R+  +  ++++S+             +   E   +  GP DTPYEGG +++
Sbjct: 1   MANIAV--QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 58

Query: 54  RVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMN 113
            + +PE YPF  P + F+ K++HPNI  V+       +             ++  +    
Sbjct: 59  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD---QWAAAMTLRTVLLSLQA 115

Query: 114 KMYHPNIDE 122
            +     D+
Sbjct: 116 LLAAAEPDD 124

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 86  FYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
            Y GG +++ + +PE YPF  P + F+ K++HPNI  V+G 
Sbjct: 50  PYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA 90

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 46.3 bits (109), Expect = 6e-08
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 14/123 (11%)

Query: 8   NRRMNIDVIKLIESKHEGTTLKG-----LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYP 62
            +R+  ++  + +      TL+      +      F GP  TPYEGG + V + +P  YP
Sbjct: 3   AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62

Query: 63  FKSPSIGFMNKMYHPNIDEVSAVF---YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN 119
           FK P + F  K+YHPNI  V+           W   + L                +  P 
Sbjct: 63  FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALI------SLQALLQSPE 116

Query: 120 IDE 122
            ++
Sbjct: 117 PND 119

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-08
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 1   MSSASAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVH 56
           M   +     ++ D   L E+ ++G T K     + E+ V+  G +++ ++G V+++ +H
Sbjct: 1   MHGRAY--LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIH 58

Query: 57  LPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMY 116
               Y +  P + F+   +HPN+D  +       +         +    S  +     + 
Sbjct: 59  FTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYT-LSSILLALQVMLS 117

Query: 117 HPNIDE 122
           +P ++ 
Sbjct: 118 NPVLEN 123

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-07
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          RR+  +  +L+     G   +      + F V   GP+D+P+EGG +K+ + LPE YP  
Sbjct: 5  RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 65 SPSIGFMNKMYHPNIDE 81
          +P + FM K+YHPN+D+
Sbjct: 65 APKVRFMTKIYHPNVDK 81

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 38  FFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVH 97
              P   PY    + +R+  P  YPFK P I F  K+YHPN+DE   +       +   +
Sbjct: 36  LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSE---N 92

Query: 98  LPEHYPFKSPSIGFMNKMYHPNIDE 122
                            +  PNI E
Sbjct: 93  WKPCTKTCQVLEALNVLVNRPNIRE 117

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 8   NRRMNIDVIKLIESKHEGTTLKGLKEFCVKFF----GPRDTPYEGGVWKVRVHLPEHYPF 63
           +RR+  ++ ++ +   +      + E  +  +     P + PY+ G +++ ++ P  YPF
Sbjct: 1   SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPF 60

Query: 64  KSPSIGFMNKMYHPNIDEVSAVFYYGGVWKVRVHLPEHYP----FKSPSIGFMNKMYHPN 119
           K P I F  K+YHPNI          G   + V   E++             +  +  P 
Sbjct: 61  KPPKITFKTKIYHPNI-------DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQ 113

Query: 120 IDE 122
            + 
Sbjct: 114 PEH 116

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-07
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 8  NRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPF 63
            R+  ++  L      G T       + +   +  G  +TPYE GV+K+ V +PE YPF
Sbjct: 4  ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 63

Query: 64 KSPSIGFMNKMYHPNIDE 81
          + P I F+  +YHPNID 
Sbjct: 64 EPPQIRFLTPIYHPNIDS 81

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 9  RRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          +R+  D +++ +        +     + E+     GP  TPYEGG +  ++  P  +PFK
Sbjct: 4  QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63

Query: 65 SPSIGFMNKMYHPNID 80
           PSI  +        +
Sbjct: 64 PPSIYMITPNGRFKCN 79

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 31  LKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVFYYGG 90
           + ++     GP  + +E  ++ + +    +YP   P + F++K+  P       V    G
Sbjct: 37  MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPC------VNPTTG 90

Query: 91  VWKVRVHLPEHY 102
             +   H    +
Sbjct: 91  EVQTDFHTLRDW 102

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 87  YYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE 126
           +   ++ + +    +YP   P + F++K+  P ++  +GE
Sbjct: 52  HENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE 91

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 41.7 bits (97), Expect = 3e-06
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 5  SAGNRRMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEH 60
          +   RR+  D  KL E    G +       +  +    FGP++TP+E G +K+ +   E 
Sbjct: 2  TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 61

Query: 61 YPFKSPSIGFMNKMYHPNIDE 81
          YP K P++ F++KM+HPN+  
Sbjct: 62 YPNKPPTVKFISKMFHPNVYA 82

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 10 RMNIDVIKLIESKHEGTTLK----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKS 65
          R+  ++   + +     TL      ++ + VK+ G  +T Y   V+K+++  P+ YP K 
Sbjct: 2  RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 66 PSIGFMNKMYHPNIDE 81
          P + F+ K        
Sbjct: 62 PIVYFLQKPPKHTHVY 77

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 9  RRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFK 64
          R +  +V  L     +G  +    + L +  V   GP  TPY GG++++++ L + +P  
Sbjct: 9  RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 68

Query: 65 SPSIGFMNKMYHPNIDE 81
           P   F+ K++HPN+  
Sbjct: 69 PPKGYFLTKIFHPNVGA 85

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 14/59 (23%)

Query: 36  VKFFGPRDTPYEGGVW---KVRVHLPEHYPFKSPSIGF-----------MNKMYHPNID 80
           +  +G   T  +G       V + +P  YP K P I              +      ID
Sbjct: 56  LSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.98
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.98
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.98
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.97
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.56
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.49
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.55
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	98.52
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.45
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.44
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	98.43
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.39
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.38
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.35
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	98.34
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.33
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.31
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.31
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.3
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.3
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	98.3
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	98.29
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	98.27
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.26
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	98.26
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.25
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	98.24
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.24
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	98.21
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	98.2
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	98.08
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	98.02
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.95
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.77
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	97.29
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	96.77
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	95.46
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	94.61
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	92.39
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	90.51
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	88.77
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	86.22

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=200.56  Aligned_cols=105  Identities=20%  Similarity=0.455  Sum_probs=96.0

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      ||   .+.|||++|+++|++++..++.+      +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 m~---~~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~   77 (117)
T d2a7la1           1 MA---SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGEN   77 (117)
T ss_dssp             GT---TSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSC
T ss_pred             CC---cHHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCC
Confidence            66   36799999999999999888764      5889999999999999999999999999999999999999999977


Q ss_pred             --cccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956         75 --YHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKM  115 (126)
Q Consensus        75 --~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l  115 (126)
                        |||||+. +|+||+   .+.|+|++++++++      ++++++|
T Consensus        78 ~~~Hpnv~~-~G~iCl~~l~~~Wsp~~ti~~vl------~~i~~lL  116 (117)
T d2a7la1          78 IPVHPHVYS-NGHICLSILTEDWSPALSVQSVC------LSIISML  116 (117)
T ss_dssp             CCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHH------HHHHHHT
T ss_pred             ccccccCcC-CCeEEeecCcCCCCCcCcHHHHH------HHHHHHh
Confidence              9999995 999999   78899999999996      8877765

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3.2e-36  Score=206.00  Aligned_cols=112  Identities=26%  Similarity=0.532  Sum_probs=105.9

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ++|.|||++|+++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY   81 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEc
Confidence            689999999999999999999876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.+|+   .+.|+|++++.+++      .+++++|..||.++.
T Consensus        82 ~-~G~iCl~~l~~~w~p~~~i~~il------~~i~~ll~~p~~~~p  120 (149)
T d1z3da1          82 A-DGSICLDILQNRWSPTYDVAAIL------TSIQSLLDEPNPNSP  120 (149)
T ss_dssp             T-TCBBCCGGGTTSCCTTCCHHHHH------HHHHHTTSSCCCSSC
T ss_pred             C-CCCEEeccccccCCCCCCHHHHH------HHHHHHhCCCCCCCh
Confidence            5 999999   68899999999997      999999999998764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=206.13  Aligned_cols=115  Identities=19%  Similarity=0.403  Sum_probs=108.1

Q ss_pred             CCCchhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          1 MSSASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      ||  +.|.+||++|++++++++..|+.+    +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++|
T Consensus         1 m~--~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (148)
T d1yrva1           1 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   78 (148)
T ss_dssp             GG--CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             CC--HHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecccccc
Confidence            77  789999999999999999999886    799999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         77 PNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        77 pnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |||+..+|.+|+     ++.|+|++++.+++      .+++++|..|+.++.
T Consensus        79 pnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL------~~I~~ll~~p~~~~p  124 (148)
T d1yrva1          79 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSIL------LALQVMLSNPVLENP  124 (148)
T ss_dssp             TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHH------HHHHHHHTSCCTTSC
T ss_pred             CceecCcccccccccCchhhcCccccHHHHH------HHHHHHHhCCCCCCc
Confidence            999966899999     47999999999997      999999999998764

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=5e-36  Score=205.65  Aligned_cols=112  Identities=23%  Similarity=0.497  Sum_probs=106.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ++|+|||++||++|++++..++.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   81 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCC
Confidence            689999999999999999999876    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.+|+   .+.|+|++++.++|      ++++++|.+||.++.
T Consensus        82 ~-~G~icl~~l~~~W~p~~~i~~il------~~i~~ll~~p~~~~~  120 (153)
T d1ayza_          82 A-NGEICLDILQNRWTPTYDVASIL------TSIQSLFNDPNPASP  120 (153)
T ss_dssp             T-TSBBCCGGGTTTCCTTCCHHHHH------HHHHHHHTCCCCSSC
T ss_pred             C-CCccccccccccCCCcCcHHHHH------HHHHHHHcCCCCCCc
Confidence            5 999999   78999999999997      999999999998764

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=6.8e-36  Score=204.14  Aligned_cols=112  Identities=21%  Similarity=0.471  Sum_probs=105.9

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      ++|.|||++|+++|++++..++.+    +|++.|+++|.||++|+|+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            368999999999999999999886    7999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.||+   .+.|+|++++.+++      ++++.+|.+||.++.
T Consensus        81 ~-~G~iCl~~l~~~W~p~~~l~~il------~~i~~ll~~p~~~~p  119 (148)
T d1y6la_          81 S-QGVICLDILKDNWSPALTISKVL------LSICSLLTDCNPADP  119 (148)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             C-CCeEEEEecCCcCCCcEeHHHHH------HHHHHHHhCCCCccc
Confidence            5 999999   68999999999997      999999999998764

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.5e-35  Score=204.09  Aligned_cols=112  Identities=24%  Similarity=0.487  Sum_probs=105.9

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      .++.|||++|+++|++++..|+.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus         8 ~~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             chHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            467889999999999999999886    8999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.+|+   .+.|+|++++.++|      .+++++|..||.++.
T Consensus        88 ~-~G~icl~~l~~~Wsp~~~i~~vl------~~i~~ll~~P~~~~p  126 (156)
T d2e2ca_          88 Q-SGNICLDILKENWTASYDVRTIL------LSLQSLLGEPNNASP  126 (156)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHTTSCCCSSC
T ss_pred             C-CCCccccccCCCCCCcccHHHHH------HHHHHHHhCCCCCCh
Confidence            5 999999   78999999999997      999999999998763

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=7.5e-36  Score=203.65  Aligned_cols=111  Identities=23%  Similarity=0.487  Sum_probs=104.6

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      ++.|||++|+++|++++..++.+    +|++.|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~-   79 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-   79 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC-
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCC-
Confidence            47899999999999999999876    7899999999999999999999999999999999999999999999999999 


Q ss_pred             ccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      .+|.+|+   .+.|+|++++.++|      ++++++|.+||.++.
T Consensus        80 ~~G~icl~~l~~~W~p~~~i~~il------~~i~~ll~~p~~~~p  118 (146)
T d1i7ka_          80 TQGNISLDILKEKWSALYDVRTIL------LSIQSLLGEPNIDSP  118 (146)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCCccccccccccCCCCcCHHHHH------HHHHHHHhCCCCCCc
Confidence            4999999   78999999999997      999999999998764

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.2e-35  Score=202.55  Aligned_cols=110  Identities=25%  Similarity=0.604  Sum_probs=104.4

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      |.|||++|+++|++++..++.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+++||||+. 
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-   80 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-   80 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC-
Confidence            5899999999999999999887    78999999999999999999999999999999999999999999999999995 


Q ss_pred             cceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         83 SAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        83 ~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|.||+   .+.|+|++++.+|+      +++++++..||.++.
T Consensus        81 ~G~iCl~~l~~~w~p~~~i~~Il------~~i~~ll~~p~~~~~  118 (147)
T d1z2ua1          81 NGSICLDILRSQWSPALTISKVL------LSICSLLCDPNPDDP  118 (147)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCCEeeehhcccCCCCCCHHHHH------HHHHHHhccCCCCCc
Confidence            999999   68899999999997      999999999998764

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=203.28  Aligned_cols=112  Identities=22%  Similarity=0.478  Sum_probs=105.9

Q ss_pred             chhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          4 ASAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         4 ~~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      +..+.|||++||++|++++.+++.+    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   83 (151)
T d1zdna1           4 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV   83 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCcee
Confidence            3789999999999999999999876    789999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         80 DEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        80 ~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      +. +|.+|+   .+.|+|++++.++|      ++++++|.+||.++
T Consensus        84 ~~-~G~ic~~~l~~~W~p~~~l~~il------~~i~~~l~~p~~~~  122 (151)
T d1zdna1          84 GA-NGEICVNVLKRDWTAELGIRHVL------LTIKCLLIHPNPES  122 (151)
T ss_dssp             CT-TSBBCHHHHTTTCCTTCCHHHHH------HHHHHHHHSCCGGG
T ss_pred             cC-CCCcccccccccCCccccHHHHH------HHHHHHHhCCCCCc
Confidence            95 999999   78999999999997      99999999999765

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=204.77  Aligned_cols=112  Identities=23%  Similarity=0.495  Sum_probs=104.0

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNI   79 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv   79 (126)
                      .+|+|||++|+++|++++..|+.+     +|++.|+++|.||+||||+||.|++.|.||++||++||+|+|.+++|||||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceE
Confidence            689999999999999999998865     589999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         80 DEVSAVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        80 ~~~~g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +. +|++|+                .+.|+|++++.++|      .+++++|.+||.++.
T Consensus        82 ~~-~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il------~~i~~ll~~p~~~~p  134 (164)
T d2ucza_          82 YP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL------LSVMSMLSEPNIESG  134 (164)
T ss_dssp             CT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHH------HHHHHHHHSCCGGGC
T ss_pred             cC-CCCeeeccccCccccccccccccccCCccccHHHHH------HHHHHHHhCCCCCCc
Confidence            95 999998                24699999999997      999999999998753

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-35  Score=202.13  Aligned_cols=115  Identities=25%  Similarity=0.591  Sum_probs=104.9

Q ss_pred             CCCchhhhhHHHHHHHHHHhcC---CCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956          1 MSSASAGNRRMNIDVIKLIESK---HEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus         1 Ms~~~~~~~RL~~e~~~l~~~~---~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      ||  +.|.+||++|+++|+++.   ..++.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 Ms--~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (154)
T d2bepa1           1 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   78 (154)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             Cc--hHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceeccc
Confidence            88  889999999999997653   344543    789999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         74 MYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        74 i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|||||+..+|.+|+   .+.|+|++++.++|      .+++++|.+||.++.
T Consensus        79 i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il------~~i~~ll~~p~~~~p  125 (154)
T d2bepa1          79 IWHPNISSVTGAICLDILKDQWAAAMTLRTVL------LSLQALLAAAEPDDP  125 (154)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CCCCCeeCCCCccccccccccCCCcCCHHHHH------HHHHHHHcCCCCCCc
Confidence            999999976899999   78999999999997      999999999998764

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=201.09  Aligned_cols=111  Identities=30%  Similarity=0.609  Sum_probs=104.2

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      .+.+||++|+++|++++..|+.+    +|++.|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~   81 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC
Confidence            47899999999999999999876    89999999999999999999999999999999999999999999999999995


Q ss_pred             ccceeee-------CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY-------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~-------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       +|.+|+       .+.|+|++++.++|      ++++++|..||.++.
T Consensus        82 -~g~icl~~l~~~~~~~w~p~~~i~~il------~~i~~ll~~p~~~~p  123 (154)
T d1yh2a1          82 -AGRICLDVLKLPPKGAWRPSLNIATVL------TSIQLLMSEPNPDDP  123 (154)
T ss_dssp             -TCBBCCGGGSCTTTSCCCTTSCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             -CCCcccccccCCccccCCccccHHHHH------HHHHHHhccCCCCCc
Confidence             999999       26899999999997      999999999998763

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=3.9e-35  Score=201.27  Aligned_cols=112  Identities=27%  Similarity=0.578  Sum_probs=105.3

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID   80 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~   80 (126)
                      +.+.|||++|+++|++++..|+.+    +|++.|+++|.||++|+|+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   81 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   81 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCC
Confidence            346799999999999999999887    7899999999999999999999999999999999999999999999999999


Q ss_pred             cccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         81 EVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        81 ~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      . +|.+|+   ...|+|++++.++|      .+++++|..||.++.
T Consensus        82 ~-~G~icl~~~~~~W~p~~~i~~il------~~i~~ll~~P~~~~p  120 (152)
T d1jata_          82 R-LGRICLDVLKTNWSPALQIRTVL------LSIQALLASPNPNDP  120 (152)
T ss_dssp             T-TCCBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTST
T ss_pred             C-CCCeeeccccccCCchhHHHHHH------HHHHHHHcCCCCCCc
Confidence            5 999999   78899999999997      999999999998763

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=5.8e-35  Score=199.68  Aligned_cols=111  Identities=28%  Similarity=0.584  Sum_probs=103.8

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      +.|||++|+++|++++..++.+     +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            6899999999999999988876     57899999999999999999999999999999999999999999999999997


Q ss_pred             ccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      .+|.+|+   .+.|+|++++.++|      ++++++|..||.++.
T Consensus        82 ~~~~~~~~~~~~~W~p~~ti~~il------~~i~~ll~~p~~~~p  120 (149)
T d1fzya_          82 VTGAICLDILKNAWSPVITLKSAL------ISLQALLQSPEPNDP  120 (149)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             CcceeechhhcccCCCcCCHHHHH------HHHHHHHhCCCCCCh
Confidence            6778888   78999999999997      999999999998764

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=192.29  Aligned_cols=103  Identities=26%  Similarity=0.548  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccc
Q psy11956          9 RRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVS   83 (126)
Q Consensus         9 ~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~   83 (126)
                      .||+||+++|++++.+++.+     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~   80 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-N   80 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-T
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCC-C
Confidence            58999999999999999865     57999999999999999999999999999999999999999999999999994 9


Q ss_pred             ceeee----------------CceeeEEEEeCCCCCCCCCeeeeeccCCCC
Q psy11956         84 AVFYY----------------GGVWKVRVHLPEHYPFKSPSIGFMNKMYHP  118 (126)
Q Consensus        84 g~ic~----------------~~~w~p~~~~~~ilp~~~p~~~~~~~l~~p  118 (126)
                      |.||+                .+.|+|++++++++      ++++++|.+|
T Consensus        81 G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL------~~i~~ll~~P  125 (125)
T d2awfa1          81 GDVCISILHEPGEDKYGYEKPEERWLPIHTVETIM------ISVISMLADP  125 (125)
T ss_dssp             CBBCCGGGSCC---------CTTSCCTTCCHHHHH------HHHHHHHSCC
T ss_pred             CEEEeccccCccccccccccccCCcCccCcHHHHH------HHHHHHhhCc
Confidence            99998                15699999999997      9999988765

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=197.92  Aligned_cols=110  Identities=29%  Similarity=0.599  Sum_probs=103.9

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      ..|||++|+++|++++..++.+    +|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~-~   81 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-K   81 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceEC-C
Confidence            4689999999999999999876    7999999999999999999999999999999999999999999999999999 5


Q ss_pred             cceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         83 SAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        83 ~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|++|+   .+.|+|++++.+++      .+++++|.+||.++.
T Consensus        82 ~G~icl~~l~~~w~p~~~i~~il------~~i~~ll~~p~~~~p  119 (149)
T d1j7db_          82 LGRICLDILKDKWSPALQIRTVL------LSIQALLSAPNPDDP  119 (149)
T ss_dssp             TCBBCCGGGTTSCCTTSCHHHHH------HHHHHHHHSCCTTCT
T ss_pred             CCcEehHHhcCCCCCCccHHHHH------HHHHHHHhCCCCCCh
Confidence            999999   78899999999997      999999999998764

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.98  E-value=1.6e-34  Score=198.91  Aligned_cols=110  Identities=22%  Similarity=0.458  Sum_probs=102.6

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----c-----CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----K-----GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      -|.+||++|+++|++++..|+.+    +     |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            36899999999999999999885    2     78999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         77 PNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        77 pnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |||+. +|++|+     .+.|+|++++.+++      +++++++..||.++
T Consensus        82 PnV~~-~G~icl~~l~~~~~W~p~~ti~~il------~~i~~ll~~p~~~~  125 (156)
T d2uyza1          82 PNVYP-SGTVSLSILEEDKDWRPAITIKQIL------LGIQELLNEPNIQD  125 (156)
T ss_dssp             TTBCT-TSBBCCGGGCTTTTCCTTCCHHHHH------HHHHHHHHSCCTTS
T ss_pred             ccccc-cceeeecccCcccccCCcccHHHHH------HHHHHHhcCCCCCC
Confidence            99994 999999     46899999999997      99999999999875

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.98  E-value=4.1e-34  Score=193.49  Aligned_cols=111  Identities=17%  Similarity=0.266  Sum_probs=99.4

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc--------cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL--------KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYH   76 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~--------~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~H   76 (126)
                      .+|.+||++||+++++++.++..+        +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            578999999999999998877554        368999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeee-----CceeeEEEEeCCCCCCCCCeeeeeccCCCC-CCC
Q psy11956         77 PNIDEVSAVFYY-----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHP-NID  121 (126)
Q Consensus        77 pnv~~~~g~ic~-----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~p-n~~  121 (126)
                      |||+..+|.+|.     .+.|+|+++++++|      ++++++|..| |.+
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL------~~i~slL~~peN~~  128 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVL------QELRRLMMSKENMK  128 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHH------HHHHHHHTSTTTTT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHH------HHHHHHHCCCCCCC
Confidence            999976677765     36899999999997      9999988876 544

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.98  E-value=1.5e-34  Score=194.95  Aligned_cols=111  Identities=15%  Similarity=0.266  Sum_probs=96.4

Q ss_pred             CchhhhhHHHHHHHHHHhcCCCccc-c-----c--CcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956          3 SASAGNRRMNIDVIKLIESKHEGTT-L-----K--GLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus         3 ~~~~~~~RL~~e~~~l~~~~~~~~~-~-----~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      |..++.+||++||++++++...+.. .     +  |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++
T Consensus         1 ~~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i   80 (136)
T d1jatb_           1 SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI   80 (136)
T ss_dssp             CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             CCCchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccc
Confidence            3578999999999999997654422 2     2  488999999999999999999999999999999999999999999


Q ss_pred             cccccccccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCC
Q psy11956         75 YHPNIDEVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPN  119 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn  119 (126)
                      +||||+..+|.+|+    .+.|+|++++++|+      ++++++|..||
T Consensus        81 ~HpnV~~~~G~icl~~l~~~~Wsp~~ti~~IL------~~i~~lL~~P~  123 (136)
T d1jatb_          81 NLPCVNPTTGEVQTDFHTLRDWKRAYTMETLL------LDLRKEMATPA  123 (136)
T ss_dssp             CCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHH------HHHHHHHTSHH
T ss_pred             cccccccCCCeEECCCCcccCcCccCcHHHHH------HHHHHHHcCCC
Confidence            99999976799998    37899999999997      99999998875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.97  E-value=5.8e-34  Score=194.86  Aligned_cols=109  Identities=24%  Similarity=0.403  Sum_probs=100.4

Q ss_pred             hhhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      |.+||++|+++|++++..++.+     +|+..|++++ ||++|||+||.|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~-   78 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD-   78 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceEC-
Confidence            5789999999999999999875     5788899866 89999999999999999999999999999999999999999 


Q ss_pred             ccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      .+|.+|+    .++|+|++++.+++      .++.++|..||.++.
T Consensus        79 ~~G~icl~~l~~~~W~p~~~i~~il------~~i~~ll~~p~~~~p  118 (150)
T d1wzva1          79 ENGQICLPIISSENWKPCTKTCQVL------EALNVLVNRPNIREP  118 (150)
T ss_dssp             TTCBCCCGGGCTTTCCTTCCHHHHH------HHHHHHHHSCCSSSC
T ss_pred             CCCCcccccccccCCCchhHHHHHH------HHHHHHHhCCCCCCc
Confidence            5999999    57899999999997      999999999998763

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.97  E-value=1.1e-33  Score=184.36  Aligned_cols=99  Identities=19%  Similarity=0.464  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeec-cccccccccc
Q psy11956         10 RMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNIDEVSA   84 (126)
Q Consensus        10 RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i-~Hpnv~~~~g   84 (126)
                      ||++|+++|++++..++.+    +|+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+. +|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~-~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TS
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECC-CC
Confidence            9999999999999999876    7899999999999999999999999999999999999999999986 8999995 99


Q ss_pred             eeee---CceeeEEEEeCCCCCCCCCeeeeeccC
Q psy11956         85 VFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKM  115 (126)
Q Consensus        85 ~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l  115 (126)
                      +||+   .++|+|++++++++      ++++++|
T Consensus        81 ~iCl~il~~~Wsp~~ti~~vl------~~i~~ll  108 (109)
T d2fo3a1          81 DICLSLLGDDYNPSLSISGLV------LSIISML  108 (109)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHH------HHHHHHH
T ss_pred             eEEeecccCCCCccCCHHHHH------HHHHHHh
Confidence            9999   78999999999986      7776654

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.6e-33  Score=194.06  Aligned_cols=110  Identities=19%  Similarity=0.347  Sum_probs=97.0

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      +|.|||++||++|++++..++.+    +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+|+++
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            48999999999999999999886    78999999999999999999999999999999999999999999999999885


Q ss_pred             ccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         82 VSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        82 ~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                       .|.+|+    +++|+|++++++|+      ++++++|..||.+.
T Consensus        81 -~~~~~~l~~~~~~Wsp~~ti~~il------~~i~~ll~~p~p~~  118 (157)
T d2f4wa1          81 -RLCLSITDFHPDTWNPAWSVSTIL------TGLLSFMVEKGPTL  118 (157)
T ss_dssp             -CBC----------CCTTCCHHHHH------HHHHHHHHSCCCCT
T ss_pred             -CeeeeeccccCCCCCccCcHHHHH------HHHHHHccCCCCCC
Confidence             444444    57899999999997      99999999998764

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.97  E-value=5e-34  Score=194.06  Aligned_cols=107  Identities=24%  Similarity=0.514  Sum_probs=99.4

Q ss_pred             hhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      .|||++|+++|++++..++.+     +|++.|+++| ||++|||+||.|++.|.||++||++||+|+|.|++|||||+. 
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-   78 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-   78 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCcc-
Confidence            489999999999999888764     6899999998 999999999999999999999999999999999999999994 


Q ss_pred             cceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         83 SAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        83 ~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      +|.+|+    .+.|+|++++.+++      ++++++|..|+.++
T Consensus        79 ~G~icl~~l~~~~w~p~~~i~~il------~~i~~ll~~p~~~~  116 (144)
T d1c4zd_          79 KGQVCLPVISAENWKPATKTDQVI------QSLIALVNDPQPEH  116 (144)
T ss_dssp             TCBBCCTTTSSSSCCTTCCHHHHH------HHHHHHHHSCCCSS
T ss_pred             CCccccccccCCCCCCcccHHHHH------HHHHHHHhCCCCCC
Confidence            999999    57899999999997      99999999998875

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=9.5e-34  Score=195.21  Aligned_cols=111  Identities=23%  Similarity=0.382  Sum_probs=100.9

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcccc---cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccc
Q psy11956          5 SAGNRRMNIDVIKLIESKHEGTTL---KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE   81 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~   81 (126)
                      ++|++||++|+++|++.+..++..   +|+..|+++| ||++|+|+||.|+++|.||++||++||+|+|.+++|||||+.
T Consensus         2 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~   80 (157)
T d1y8xa1           2 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL   80 (157)
T ss_dssp             CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccc
Confidence            689999999999998766555433   7899999988 899999999999999999999999999999999999999995


Q ss_pred             ccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         82 VSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        82 ~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                       +|.+|+   .+.|+|++++.+++      .++.++|.+||.++.
T Consensus        81 -~G~ic~~~~~~~W~p~~~i~~il------~~I~~ll~~Pn~~~p  118 (157)
T d1y8xa1          81 -EGNVCLNILREDWKPVLTINSII------YGLQYLFLEPNPEDP  118 (157)
T ss_dssp             -TCBBCCGGGTTTCCTTCCHHHHH------HHHHHHHHSCCCSSC
T ss_pred             -cceeeeeecccCCCCCCcHHHHH------HHHHHHHcCCCCcCh
Confidence             999999   68999999999997      899999999998753

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.97  E-value=3e-33  Score=193.29  Aligned_cols=109  Identities=23%  Similarity=0.496  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHhcCCCcccc-----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeeccccccccc
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL-----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV   82 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~   82 (126)
                      ..||++|+++|++++.+++.+     +|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+. 
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~-   80 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-   80 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT-
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC-
Confidence            579999999999999999886     47999999999999999999999999999999999999999999999999995 


Q ss_pred             cceeeeC----------------ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         83 SAVFYYG----------------GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        83 ~g~ic~~----------------~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      +|.+|+.                +.|+|++++.++|      .+++++|..||.++.
T Consensus        81 ~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL------~~i~~ll~~p~~~~p  131 (161)
T d1pzva_          81 EGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL------LSVISMLTDPNFESP  131 (161)
T ss_dssp             TSBBCCGGGCCC---------CCSSCCTTCCHHHHH------HHHHHHHHSCCCSSC
T ss_pred             CCccchhhcCCcccccccccccccccCccccHHHHH------HHHHHHHhCCCCCCc
Confidence            9999981                2599999999997      999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=2.7e-33  Score=193.68  Aligned_cols=111  Identities=20%  Similarity=0.487  Sum_probs=98.3

Q ss_pred             hhhHHHHHHHHHHhcC-------------CCcccc----cCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCcee
Q psy11956          7 GNRRMNIDVIKLIESK-------------HEGTTL----KGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIG   69 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~-------------~~~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~   69 (126)
                      .++||++|+++|++..             ..++.+    +|+++|+++|.||.||||+||.|+++|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            4789999999997622             233333    68999999999999999999999999999999999999999


Q ss_pred             Eeeeccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         70 FMNKMYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        70 f~t~i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      |.|+++||||+..+|.+|+   .+.|+|++++.++|      .+++.+|..||.++.
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL------~~I~~ll~~P~~~dp  132 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL------LSIQAMLADPVPTDP  132 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHH------HHHHHHHHSCCTTSC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHH------HHHHHHHhCCCCCCc
Confidence            9999999999877899999   78899999999997      999999999998763

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=1.3e-32  Score=189.66  Aligned_cols=111  Identities=38%  Similarity=0.683  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeeecccccccccccee
Q psy11956          7 GNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSAVF   86 (126)
Q Consensus         7 ~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i~Hpnv~~~~g~i   86 (126)
                      +.|||++|+++|++++..-...+|+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.+
T Consensus         1 ~~rr~~~e~~~l~~~~~~~~~~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~v   80 (158)
T d1yf9a1           1 SNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSV   80 (158)
T ss_dssp             CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBB
T ss_pred             CchHHHHHHHHHhcCCCcCCCCCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCcccc
Confidence            37999999999998776533348999999999999999999999999999999999999999999999999998668999


Q ss_pred             ee---CceeeEEEEeCCCCCCCCCeee-eeccCCCCCCCCC
Q psy11956         87 YY---GGVWKVRVHLPEHYPFKSPSIG-FMNKMYHPNIDEV  123 (126)
Q Consensus        87 c~---~~~w~p~~~~~~ilp~~~p~~~-~~~~l~~pn~~~~  123 (126)
                      |+   .+.|+|.+++.+++      .. +..++.+||.++.
T Consensus        81 cl~il~~~W~p~~~i~~il------~~~i~~ll~~P~~~~p  115 (158)
T d1yf9a1          81 CLDVINQTWTPMYQLENIF------DVFLPQLLRYPNPSDP  115 (158)
T ss_dssp             CHHHHHHHCCTTCCTHHHH------HTHHHHHHHSCCSSCC
T ss_pred             cccccccccCchHhhhhHH------HHHHHHHhcCCCCCcc
Confidence            99   78999999999885      45 4456678887753

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-32  Score=186.27  Aligned_cols=111  Identities=11%  Similarity=0.214  Sum_probs=97.2

Q ss_pred             hhhhhHHHHHHHHHHhcCCC--ccc-c----cCcccEEEEEEC-CCCCCCCCCE-----------EEEEEEcCCCCCCCC
Q psy11956          5 SAGNRRMNIDVIKLIESKHE--GTT-L----KGLKEFCVKFFG-PRDTPYEGGV-----------WKVRVHLPEHYPFKS   65 (126)
Q Consensus         5 ~~~~~RL~~e~~~l~~~~~~--~~~-~----~~~~~w~~~i~g-p~~t~y~gg~-----------f~~~i~~p~~yP~~p   65 (126)
                      ..|.+||++||++|+++...  ++. +    +|+++|++.|.| |++|+|+||.           |+++|.||++||++|
T Consensus         3 ~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~P   82 (162)
T d1zuoa1           3 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP   82 (162)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhc
Confidence            68999999999999876543  322 2    689999999999 8999999886           999999999999999


Q ss_pred             CceeEeeeccccccccccceeee----CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956         66 PSIGFMNKMYHPNIDEVSAVFYY----GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID  121 (126)
Q Consensus        66 P~v~f~t~i~Hpnv~~~~g~ic~----~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~  121 (126)
                      |+|+|.++++|||+...+|.+|+    .++|+|++++++|+      ++++++|.+||.+
T Consensus        83 P~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL------~~i~~ll~~~~p~  136 (162)
T d1zuoa1          83 PFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI------MQINATLVKGKAR  136 (162)
T ss_dssp             CEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHH------HHHHHHHHHTTCE
T ss_pred             ceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHH------HHHHHHHcCCCCC
Confidence            99999999999996546999999    56799999999997      9999999887653

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4e-16  Score=104.58  Aligned_cols=91  Identities=15%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhcCCC---ccc----ccCcccEEEEEECCCCCCCCCCEEEE--EEEcCCCCCCCCCceeEeee-----cc
Q psy11956         10 RMNIDVIKLIESKHE---GTT----LKGLKEFCVKFFGPRDTPYEGGVWKV--RVHLPEHYPFKSPSIGFMNK-----MY   75 (126)
Q Consensus        10 RL~~e~~~l~~~~~~---~~~----~~~~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~yP~~pP~v~f~t~-----i~   75 (126)
                      +..+|+.++.+.-..   ...    .++...|.+.|.|+.+++|+||.|.+  .|.||++||++||.|.+...     ++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            455677777654321   111    16678899999999999999999998  55589999999999988753     68


Q ss_pred             ccccccccceeeeC--cee-eEEEEeCCC
Q psy11956         76 HPNIDEVSAVFYYG--GVW-KVRVHLPEH  101 (126)
Q Consensus        76 Hpnv~~~~g~ic~~--~~w-~p~~~~~~i  101 (126)
                      |+||+. +|++|+.  +.| .+..++.++
T Consensus        98 h~~V~~-~G~V~lp~L~~W~~~~s~L~~l  125 (141)
T d1s1qa_          98 GKHVDA-NGKIYLPYLHEWKHPQSDLLGL  125 (141)
T ss_dssp             SSSBCT-TCBBCCHHHHTCCTTTCCHHHH
T ss_pred             CCeECC-CCCCcchhhcCCCcccccHHHH
Confidence            999995 9999992  455 455566555

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2.1e-15  Score=102.22  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHhcCCC---ccc--c--cCcccEEEEEECCCCCCCCCCE---EEEEEEcCCCCCCCCCceeEeee----
Q psy11956          8 NRRMNIDVIKLIESKHE---GTT--L--KGLKEFCVKFFGPRDTPYEGGV---WKVRVHLPEHYPFKSPSIGFMNK----   73 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~---~~~--~--~~~~~w~~~i~gp~~t~y~gg~---f~~~i~~p~~yP~~pP~v~f~t~----   73 (126)
                      .+|+.+|+.++.++-..   ...  .  +......+.+.|.-..+|+|+.   +.+.|-||++||++||.++|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            46788888888665332   111  1  4456788999999999999995   67788899999999999999764    


Q ss_pred             -------ccccccccccceeee---CceeeEEEEeCCCCCCCCCeeeeeccCCCCCCC
Q psy11956         74 -------MYHPNIDEVSAVFYY---GGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNID  121 (126)
Q Consensus        74 -------i~Hpnv~~~~g~ic~---~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~  121 (126)
                             ++||||+. +|+||+   .+.|.++.++.+++      ..++..+.+|..|
T Consensus       101 ~~~~~~i~~hp~Vd~-~G~V~lp~L~~W~~~~s~L~~ll------~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVV------QELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGGGGBCT-TSCBCCHHHHSCCTTTCCHHHHH------HHHHTGGGSCCCC
T ss_pred             cCCCcccccCCCCCC-CCcEehHHhcCCCCccCcHHHHH------HHHHHHhcCCCCC
Confidence                   57999995 999999   56667888888884      6666665555444

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=98.52  E-value=2.8e-08  Score=66.79  Aligned_cols=52  Identities=46%  Similarity=0.910  Sum_probs=47.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||-.|.|+.|+++.++.|...+.+.+.||++||.+.|.+.++||||++.+|+
T Consensus        28 w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~   79 (158)
T d1yf9a1          28 FWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS   79 (158)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             EEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCccc
Confidence            5666777788888899999999999999999999999999999999998884

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=98.45  E-value=6.2e-08  Score=64.62  Aligned_cols=51  Identities=33%  Similarity=0.815  Sum_probs=46.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+++.++.|...+.+.+.||++||.+.|++.++|||||. +|.
T Consensus        35 w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~-~G~   85 (152)
T d1jata_          35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGR   85 (152)
T ss_dssp             EEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCC
T ss_pred             hheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCC-CCC
Confidence            777788788899999999999999999999999999999999999997 673

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=98.44  E-value=7.1e-08  Score=63.99  Aligned_cols=52  Identities=37%  Similarity=0.704  Sum_probs=44.3

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+..|.++.|+++.++.|...+.+.+.||++||.+.|++.++||||++.+|.
T Consensus        34 w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~~~   85 (149)
T d1fzya_          34 LKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA   85 (149)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCC
T ss_pred             EEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCcce
Confidence            3444555567777789999999999999999999999999999999987764

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.43  E-value=6.7e-08  Score=64.52  Aligned_cols=52  Identities=35%  Similarity=0.805  Sum_probs=44.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|++.++||||+..+|+
T Consensus        39 w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~   90 (154)
T d2bepa1          39 LRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGA   90 (154)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred             eEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCCc
Confidence            3444555566677788999999999999999999999999999999988884

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=98.39  E-value=1.1e-07  Score=62.62  Aligned_cols=52  Identities=15%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+.+.||++||.+.|++.++||||+..+|.
T Consensus        41 W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~~~~g~   92 (139)
T d2a4da1          41 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV   92 (139)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             EEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCcCCCCE
Confidence            4555555567777788999999999999999999999999999999998773

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=98.38  E-value=1e-07  Score=63.51  Aligned_cols=49  Identities=41%  Similarity=0.779  Sum_probs=42.4

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEV  123 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~  123 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|++.++||||+..
T Consensus        34 w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~   82 (154)
T d1yh2a1          34 LRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA   82 (154)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             hhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCC
Confidence            4555556677777788999999999999999999999999999999973

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=98.35  E-value=1.6e-07  Score=61.58  Aligned_cols=52  Identities=17%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||+..+|+
T Consensus        40 W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~~~~G~   91 (136)
T d1jatb_          40 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE   91 (136)
T ss_dssp             EEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             EEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccccCCCe
Confidence            3444444556666688899999999999999999999999999999988884

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.9e-07  Score=59.52  Aligned_cols=51  Identities=22%  Similarity=0.575  Sum_probs=42.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccC--CCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKM--YHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l--~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+.+.||++||.+.|++.+  +|||++. +|+
T Consensus        37 w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~-~G~   89 (117)
T d2a7la1          37 WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGH   89 (117)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT-TCB
T ss_pred             EEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCcC-CCe
Confidence            44455556777777889999999999999999999999976  8999987 663

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=98.33  E-value=1.6e-07  Score=62.24  Aligned_cols=50  Identities=40%  Similarity=0.859  Sum_probs=45.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|.+.++||||++ +|
T Consensus        34 w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~-~G   83 (149)
T d1j7db_          34 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LG   83 (149)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TC
T ss_pred             eeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECC-CC
Confidence            566677778888889999999999999999999999999999999997 66

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=98.31  E-value=1.8e-07  Score=62.52  Aligned_cols=50  Identities=28%  Similarity=0.591  Sum_probs=44.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||.+||.+.|++.++||||+. +|
T Consensus        39 W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G   88 (156)
T d2uyza1          39 WECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SG   88 (156)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT-TS
T ss_pred             EEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccccccccc-cc
Confidence            566666777888889999999999999999999999999999999987 55

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=61.95  Aligned_cols=52  Identities=23%  Similarity=0.644  Sum_probs=44.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |+..|.++.|+++.++.|...+.+.+.||++||.+.|++.++||||+..+|+
T Consensus        36 W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~   87 (148)
T d1yrva1          36 WEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ   87 (148)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCC
T ss_pred             EEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCccc
Confidence            5555555667777788999999999999999999999999999999987884

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=98.30  E-value=2.2e-07  Score=59.89  Aligned_cols=50  Identities=32%  Similarity=0.817  Sum_probs=43.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.++.+.++.|...+.+...||++||.+.|.+.++|||++. +|
T Consensus        32 w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~-~G   81 (125)
T d2awfa1          32 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NG   81 (125)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TC
T ss_pred             EEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCC-CC
Confidence            455556566777778899999999999999999999999999999997 45

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=98.30  E-value=2e-07  Score=62.62  Aligned_cols=50  Identities=28%  Similarity=0.629  Sum_probs=43.6

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|.+.++||||+. +|
T Consensus        36 w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G   85 (164)
T d2ucza_          36 WDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NG   85 (164)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT-TS
T ss_pred             hheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcC-CC
Confidence            555566667777778999999999999999999999999999999987 55

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=98.30  E-value=2e-07  Score=61.46  Aligned_cols=51  Identities=37%  Similarity=0.865  Sum_probs=45.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+++.++.|...+.+.+.||++||.+.|++.++||||+. +|.
T Consensus        33 w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G~   83 (147)
T d1z2ua1          33 WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGS   83 (147)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             hhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC-CCC
Confidence            666666677788889999999999999999999999999999999997 773

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=98.29  E-value=1.9e-07  Score=62.65  Aligned_cols=50  Identities=32%  Similarity=0.745  Sum_probs=44.1

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|++.++||||+. +|
T Consensus        33 W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~-~G   82 (161)
T d1pzva_          33 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-EG   82 (161)
T ss_dssp             EEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT-TS
T ss_pred             EEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC-CC
Confidence            455566678888889999999999999999999999999999999987 45

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.27  E-value=2.7e-07  Score=62.01  Aligned_cols=52  Identities=29%  Similarity=0.686  Sum_probs=47.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.|+++.++.|...+.+...||++||.+.|++.++|||++..+|.
T Consensus        46 W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPni~~~~G~   97 (161)
T d2f4za1          46 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA   97 (161)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             eEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCCCCCCceECCCCC
Confidence            6667777788888899999999999999999999999999999999988884

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=98.26  E-value=3.5e-07  Score=60.46  Aligned_cols=50  Identities=28%  Similarity=0.711  Sum_probs=44.3

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|++.++||||+. +|
T Consensus        33 w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G   82 (146)
T d1i7ka_          33 WVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QG   82 (146)
T ss_dssp             EEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TC
T ss_pred             EEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCC-CC
Confidence            455566678888889999999999999999999999999999999997 56

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=98.26  E-value=2.8e-07  Score=61.26  Aligned_cols=47  Identities=30%  Similarity=0.702  Sum_probs=38.8

Q ss_pred             cccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         79 IDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        79 v~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      |.++.|+++.++.|...+.+...||++||.+.|.+.++||||+. +|.
T Consensus        42 i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~-~G~   88 (151)
T d1zdna1          42 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGE   88 (151)
T ss_dssp             EECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSB
T ss_pred             EecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceecC-CCC
Confidence            33344555557788999999999999999999999999999987 663

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=98.25  E-value=3.2e-07  Score=60.64  Aligned_cols=51  Identities=31%  Similarity=0.681  Sum_probs=42.9

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||.-|.++.++++.++.|...+.+.+.||++||.+.|++.++|||||. +|.
T Consensus        34 w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~-~G~   84 (148)
T d1y6la_          34 WRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS-QGV   84 (148)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCB
T ss_pred             eceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECC-CCe
Confidence            344444556677778899999999999999999999999999999997 673

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=98.24  E-value=3.5e-07  Score=60.57  Aligned_cols=51  Identities=29%  Similarity=0.628  Sum_probs=43.3

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g~  126 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|.+.++||||+. +|.
T Consensus        35 w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~-~G~   85 (149)
T d1z3da1          35 WEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA-DGS   85 (149)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCB
T ss_pred             hceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcC-CCC
Confidence            444555566777778889999999999999999999999999999997 663

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=98.24  E-value=4.3e-07  Score=59.78  Aligned_cols=49  Identities=41%  Similarity=0.836  Sum_probs=41.8

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||.-| ++.|+++.++.|...+.+...||++||.+.|++.++||||+. +|
T Consensus        32 w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~-~G   80 (144)
T d1c4zd_          32 WQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KG   80 (144)
T ss_dssp             EEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TC
T ss_pred             EEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCcc-CC
Confidence            44444 456777778999999999999999999999999999999997 55

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=98.21  E-value=4.2e-07  Score=60.25  Aligned_cols=50  Identities=28%  Similarity=0.634  Sum_probs=44.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+.+.++.|...+.+...||++||.+.|++.++||||+. +|
T Consensus        35 w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~-~G   84 (153)
T d1ayza_          35 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NG   84 (153)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TS
T ss_pred             HhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCC-CC
Confidence            555666667788888999999999999999999999999999999987 56

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=98.20  E-value=4.4e-07  Score=60.63  Aligned_cols=50  Identities=30%  Similarity=0.709  Sum_probs=42.0

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      ||..|.++.|+++.++.|...+.+...||++||.+.|++.++||||+. +|
T Consensus        41 W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~-~G   90 (156)
T d2e2ca_          41 WVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SG   90 (156)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TC
T ss_pred             EEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCC-CC
Confidence            344445556677778889999999999999999999999999999997 56

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=98.08  E-value=1.3e-06  Score=54.94  Aligned_cols=51  Identities=24%  Similarity=0.565  Sum_probs=41.7

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccC-CCCCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKM-YHPNIDEVSGE  126 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l-~~pn~~~~~g~  126 (126)
                      ||..+.++.|+++.++.|...+++.+.||++||.+.|.+.+ +|||++. +|+
T Consensus        30 w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~-~G~   81 (109)
T d2fo3a1          30 WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGD   81 (109)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TSB
T ss_pred             EEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECC-CCe
Confidence            44455555666667888999999999999999999999975 8999987 663

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=57.29  Aligned_cols=43  Identities=42%  Similarity=0.838  Sum_probs=38.4

Q ss_pred             ccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         82 VSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        82 ~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      +.++++.++.|...+.+...||++||.+.|++.++||||++ +|
T Consensus        39 p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~-~G   81 (150)
T d1wzva1          39 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NG   81 (150)
T ss_dssp             CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TC
T ss_pred             CCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC-CC
Confidence            45666668889999999999999999999999999999997 55

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=97.95  E-value=2.8e-06  Score=56.63  Aligned_cols=42  Identities=31%  Similarity=0.634  Sum_probs=37.9

Q ss_pred             cceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         83 SAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        83 ~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      .++++.++.+...+.+...||++||.+.|.+.++||||+. +|
T Consensus        41 ~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~-~G   82 (157)
T d1y8xa1          41 DEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EG   82 (157)
T ss_dssp             SSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TC
T ss_pred             CCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccc-cc
Confidence            4566668889999999999999999999999999999998 56

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.1e-06  Score=53.37  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=55.4

Q ss_pred             hhhhHHHHHHHHHHhcCCCcccccCcccEEEEEECCCCCCCCCCE----------EEEEEEcCCCCCCCCCceeEee---
Q psy11956          6 AGNRRMNIDVIKLIESKHEGTTLKGLKEFCVKFFGPRDTPYEGGV----------WKVRVHLPEHYPFKSPSIGFMN---   72 (126)
Q Consensus         6 ~~~~RL~~e~~~l~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~~p~~yP~~pP~v~f~t---   72 (126)
                      ...+||..||+.|.+--...  .++-.+|.-.=.-++||-|.|.+          |.+++++|..||..||.+....   
T Consensus        25 ~W~~RLKEEy~aLI~Yv~nN--K~~dndWF~lesn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~lPeLdG  102 (162)
T d2in1a1          25 LWVQRLKEEYQSLIRYVENN--KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDG  102 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHTTCCCEEEEECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGSS
T ss_pred             HHHHHHHHHHHHHHHHHHhc--ccccCCeEEeccCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceeccccCC
Confidence            46789999999985511100  13445665555668888888765          5566778999999999997652   


Q ss_pred             ---eccccccccccceeeeCceeeE
Q psy11956         73 ---KMYHPNIDEVSAVFYYGGVWKV   94 (126)
Q Consensus        73 ---~i~Hpnv~~~~g~ic~~~~w~p   94 (126)
                         ++|.      .|+||+...|+|
T Consensus       103 KTaKMYR------GGkIClt~HFkP  121 (162)
T d2in1a1         103 KTAKMYR------GGKICLTDHFKP  121 (162)
T ss_dssp             SCSSSCG------GGBCCCCTTSHH
T ss_pred             chhhhhc------Cceeeccccchh
Confidence               3333      799999655544

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=97.29  E-value=8.8e-05  Score=49.01  Aligned_cols=48  Identities=23%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             cccccccccceeeeCceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCC
Q psy11956         75 YHPNIDEVSAVFYYGGVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDE  122 (126)
Q Consensus        75 ~Hpnv~~~~g~ic~~~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~  122 (126)
                      |+..|.++.|+++.++.|...+.+...||++||.+.|.+..+|+|++-
T Consensus        33 w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1          33 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             EEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             eeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            444555566777778899999999999999999999999988888874

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00037  Score=46.10  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             ceeeEEEEeCCCCCCCCCeeeeeccCCCCCCCCCCC
Q psy11956         90 GVWKVRVHLPEHYPFKSPSIGFMNKMYHPNIDEVSG  125 (126)
Q Consensus        90 ~~w~p~~~~~~ilp~~~p~~~~~~~l~~pn~~~~~g  125 (126)
                      +.+...+.+...||++||.+.|++.++|||+...+|
T Consensus        66 ~~~~l~i~fp~~YP~~PP~v~f~t~i~hpn~~~~~G  101 (162)
T d1zuoa1          66 EYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGG  101 (162)
T ss_dssp             CSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGG
T ss_pred             ceEEEEEECCCchhhhcceEEEEEEeeccccccCCc
Confidence            457888999999999999999999999999766566

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.066  Score=32.39  Aligned_cols=64  Identities=14%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhcCCCcccc----cCccc--EEEEEECCC--CCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956         11 MNIDVIKLIESKHEGTTL----KGLKE--FCVKFFGPR--DTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus        11 L~~e~~~l~~~~~~~~~~----~~~~~--w~~~i~gp~--~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      |..|+..|+.--...+..    ++...  ..+.+....  +.--......+.+.+|++||.++|.+.+....
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~   77 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR   77 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccC
Confidence            578888887765544433    22233  344444211  11112356788899999999999999887653

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.067  Score=33.95  Aligned_cols=37  Identities=19%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             CceeeEEEE--eCCCCCCCCCeeeeec-----cCCCCCCCCCCCC
Q psy11956         89 GGVWKVRVH--LPEHYPFKSPSIGFMN-----KMYHPNIDEVSGE  126 (126)
Q Consensus        89 ~~~w~p~~~--~~~ilp~~~p~~~~~~-----~l~~pn~~~~~g~  126 (126)
                      |+.|...+.  +...||++||.+.+..     ..+|||||. +|+
T Consensus        63 g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~-~G~  106 (141)
T d1s1qa_          63 GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGK  106 (141)
T ss_dssp             TEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCT-TCB
T ss_pred             CCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECC-CCC
Confidence            667777444  6999999999998764     267999997 774

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.57  Score=28.80  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHhcCCCcccc-c-C-------cccEEEEEECCC-CCCCCCCEEEEEEEcCCCCCCCCCceeEeeec
Q psy11956          8 NRRMNIDVIKLIESKHEGTTL-K-G-------LKEFCVKFFGPR-DTPYEGGVWKVRVHLPEHYPFKSPSIGFMNKM   74 (126)
Q Consensus         8 ~~RL~~e~~~l~~~~~~~~~~-~-~-------~~~w~~~i~gp~-~t~y~gg~f~~~i~~p~~yP~~pP~v~f~t~i   74 (126)
                      ..+-..|+..|+.--...+.. . +       .....+.+.... +.......+.+.+.||.+||..+|.+.+....
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~~   88 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAK   88 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecCC
Confidence            345567888886544333322 1 1       113455554322 22233456889999999999999999887643

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.51  E-value=0.31  Score=31.08  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             eeEEEEeCCCCCCCCCeeeeecc-----------CCCCCCCCCCCC
Q psy11956         92 WKVRVHLPEHYPFKSPSIGFMNK-----------MYHPNIDEVSGE  126 (126)
Q Consensus        92 w~p~~~~~~ilp~~~p~~~~~~~-----------l~~pn~~~~~g~  126 (126)
                      ..-.+-+.+.||++||.+.+...           .+|||||+ +|+
T Consensus        74 ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~-~G~  118 (152)
T d1uzxa_          74 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGW  118 (152)
T ss_dssp             EEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCT-TSC
T ss_pred             EEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCC-CCc
Confidence            34556679999999999999764           45999998 675

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.19  Score=31.04  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=21.9

Q ss_pred             CCEEEEEEEcCCCCCCCCCceeEeee
Q psy11956         48 GGVWKVRVHLPEHYPFKSPSIGFMNK   73 (126)
Q Consensus        48 gg~f~~~i~~p~~yP~~pP~v~f~t~   73 (126)
                      .-...+.+.+|.+||..+|.+...+.
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~   90 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV   90 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC
Confidence            45688889999999999999987653

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.33  Score=29.97  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.6

Q ss_pred             CEEEEEEEcCCCCCCCCCceeEee
Q psy11956         49 GVWKVRVHLPEHYPFKSPSIGFMN   72 (126)
Q Consensus        49 g~f~~~i~~p~~yP~~pP~v~f~t   72 (126)
                      -.+.+.+.+|++||..+|.+...+
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~   91 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS   91 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec
Confidence            457788999999999999998765