Psyllid ID: psy1198

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcc
Coil and Loop (DISEMBL)
rrsssrggggvgggghhnsgSAAAAAatsgggqggkaatlygapgggkaATLYAQSgmsagetqggsvageedknagaqgststsgaasgtasTSLLsgvassssgpshapgaaldseseDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMgnedtltgfpvkQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Flexible Loop (DISEMBL)
rrsssrggggvgggghHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Low Complexity Region (SEG)
RRsssrggggvgggghhnsgsaaaaaatsgggqggkaaTLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNagaqgststsgaasgtastsllsgvassssgpshapgaalDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Disordered region (IsUnstruct)
********************************************************************************************************************************LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTAL***************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************QAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Disordered Region (DISEMBL)
***********************************KAATLYGAPGGGKAATLYAQSG******************************************************************TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Disordered Region (DISPRO)
*********************************************************************************************************GPSHA**********DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RRSSSRGGGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGSVAGEEDKNAGAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q14669	1992	E3 ubiquitin-protein liga	yes	N/A	0.502	0.062	0.833	7e-58
E1B7Q7	1992	E3 ubiquitin-protein liga	yes	N/A	0.502	0.062	0.833	8e-58
F1LP64	2025	E3 ubiquitin-protein liga	yes	N/A	0.502	0.061	0.833	9e-58
G5E870	2025	E3 ubiquitin-protein liga	yes	N/A	0.502	0.061	0.833	9e-58
B4F6W9	2056	E3 ubiquitin-protein liga	yes	N/A	0.502	0.060	0.833	1e-57
F1RCR6	2026	E3 ubiquitin-protein liga	yes	N/A	0.506	0.062	0.817	4e-56
Q6WWW4	1888	E3 ubiquitin-protein liga	yes	N/A	0.497	0.065	0.412	5e-20
Q9LYZ7	1502	E3 ubiquitin-protein liga	no	N/A	0.497	0.082	0.341	6e-13
Q10435	1647	Probable ubiquitin fusion	yes	N/A	0.477	0.072	0.292	4e-05
P33202	1483	Ubiquitin fusion degradat	yes	N/A	0.538	0.090	0.236	7e-05

>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1

 Score =  223 bits (569), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query: 243 KAILQA 248
           KAILQA
Sbjct: 555 KAILQA 560

Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2

 Score =  223 bits (569), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query: 243 KAILQA 248
           KAILQA
Sbjct: 555 KAILQA 560

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1

 Score =  223 bits (568), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1

 Score =  223 bits (568), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 478 SSKAQQLLQGLQAT-DESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 536

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 537 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 596

Query: 243 KAILQA 248
           KAILQA
Sbjct: 597 KAILQA 602

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 115/126 (91%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA GDE QQLQA +EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 475 SSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 534

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+A RALTYMMEALPRSSAVV+DA+P FLEKLQVIQ +DVAEQ+LTALEMLSRRHS
Sbjct: 535 FDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHS 594

Query: 243 KAILQA 248
           KAILQA
Sbjct: 595 KAILQA 600

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 84/126 (66%), Gaps = 2/126 (1%)

Query: 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184
           + +++L  L+A G+E +Q++A+ ++C+ML +G ED+L+ F V   VP L+ LL+ + N D
Sbjct: 194 RMKKILSGLRAEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPD 253

Query: 185 MMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           +M  A RALT++ + LP S A V+   AV   + +L  I+ MD+AEQSL AL+ +S+ H 
Sbjct: 254 IMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKISQEHP 313

Query: 243 KAILQA 248
            A L+A
Sbjct: 314 TACLRA 319

Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184
           K + LL++L    D   QL  + E+C++L    E++L+      + P L+ L   ++N D
Sbjct: 110 KLKSLLLNLTGETDPSGQLSRLTELCEVLSFSTEESLSSVMANMLSPVLVKLAKHENNAD 169

Query: 185 MMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           +M  A RA+TY+ +  P S   ++  D +P   ++L  I+ +DVAEQ L ALE +SR   
Sbjct: 170 IMLLAIRAITYLCDVYPPSVEFLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEP 229

Query: 243 KAILQA 248
            A L A
Sbjct: 230 VACLNA 235

Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFD-- 184
           +LL  ++   D   Q+ ++ E+ +   M  ED L G F     + A   +LS   N+D  
Sbjct: 372 RLLEGIKDFSDPTVQMLSLQELSEAFAMSTEDMLVGLFSTDSYIAAFSEILS-GRNYDFG 430

Query: 185 -----MMNNACRALTYMMEALPRSSAVVLDA--VPTFLEKLQVIQCMDVAEQSLTALEML 237
                +M +    ++ MMEALP   A +  +  V    E++  +Q +D+AEQ+L  LE L
Sbjct: 431 EVSIQLMLSCTTCVSNMMEALPLCMAKIAYSPIVRILCERMFDMQYIDIAEQALGVLERL 490

Query: 238 SRRHSKAILQ 247
           S+     IL+
Sbjct: 491 SKDFGICILE 500

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 105 SGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGF 164
           S  S A    +    E+T   ++   ++++++ +  +    ++ M QM+V    D +   
Sbjct: 162 SAESSARNERISKLIENTGNASEDPYIAMESLKELSEN---ILMMNQMVV----DRI--I 212

Query: 165 PVKQVVPALITLLS---MDHNFDMMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQ 219
           P++ ++  +  +LS   +    ++   ACR +  + E  P S ++ +D   +P    KL 
Sbjct: 213 PMETLIGNIAAILSDKILREELELQMQACRCMYNLFEVCPESISIAVDEHVIPILQGKLV 272

Query: 220 VIQCMDVAEQSLTALEMLSRRHSKAILQ 247
            I  +D+AEQ L  +E +SR H + IL+
Sbjct: 273 EISYIDLAEQVLETVEYISRVHGRDILK 300


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.124    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,249,977
Number of Sequences: 539616
Number of extensions: 3696326
Number of successful extensions: 65131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 979
Number of HSP's that attempted gapping in prelim test: 27579
Number of HSP's gapped (non-prelim): 16233
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
390342409	2243	PREDICTED: probable E3 ubiquitin-protein	0.506	0.056	0.857	2e-59
390342411	2243	PREDICTED: probable E3 ubiquitin-protein	0.506	0.056	0.857	3e-59
62822206	560	unknown [Homo sapiens]	0.502	0.223	0.833	3e-58
291235604	2140	PREDICTED: thyroid hormone receptor inte	0.506	0.058	0.850	4e-57
405954644	1942	Putative E3 ubiquitin-protein ligase TRI	0.497	0.063	0.838	5e-57
74144015	756	unnamed protein product [Mus musculus]	0.502	0.165	0.833	1e-56
183985686	1114	LOC100158539 protein [Xenopus (Silurana)	0.502	0.112	0.833	1e-56
119591305	822	thyroid hormone receptor interactor 12,	0.502	0.152	0.833	1e-56
119591308	807	thyroid hormone receptor interactor 12,	0.502	0.154	0.833	1e-56
74182645	983	unnamed protein product [Mus musculus]	0.502	0.127	0.833	2e-56

>gi|390342409|ref|XP_003725659.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like [Strongylocentrotus purpuratus]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 119/126 (94%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KA QLL  LQA GDE QQLQAV+EMCQ+LVMGNEDTL GFPVKQVVPALI+LLSM+HN
Sbjct: 529 SSKAHQLLSGLQASGDESQQLQAVIEMCQLLVMGNEDTLGGFPVKQVVPALISLLSMEHN 588

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSS+VV+DA+P FLEKLQVIQCMDVAEQSLTALEMLSRRHS
Sbjct: 589 FDIMNHACRALTYMMEALPRSSSVVMDAIPVFLEKLQVIQCMDVAEQSLTALEMLSRRHS 648

Query: 243 KAILQA 248
           KAILQA
Sbjct: 649 KAILQA 654

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390342411|ref|XP_783595.3| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 3 [Strongylocentrotus purpuratus]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 119/126 (94%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KA QLL  LQA GDE QQLQAV+EMCQ+LVMGNEDTL GFPVKQVVPALI+LLSM+HN
Sbjct: 529 SSKAHQLLSGLQASGDESQQLQAVIEMCQLLVMGNEDTLGGFPVKQVVPALISLLSMEHN 588

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSS+VV+DA+P FLEKLQVIQCMDVAEQSLTALEMLSRRHS
Sbjct: 589 FDIMNHACRALTYMMEALPRSSSVVMDAIPVFLEKLQVIQCMDVAEQSLTALEMLSRRHS 648

Query: 243 KAILQA 248
           KAILQA
Sbjct: 649 KAILQA 654

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|62822206|gb|AAY14755.1| unknown [Homo sapiens]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query: 243 KAILQA 248
           KAILQA
Sbjct: 555 KAILQA 560

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291235604|ref|XP_002737735.1| PREDICTED: thyroid hormone receptor interactor 12-like [Saccoglossus kowalevskii]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/127 (85%), Positives = 116/127 (91%), Gaps = 1/127 (0%)

Query: 122 TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH 181
           T+TKAQQLL  LQ+  DE QQLQA +EMCQ+LVMGNE+TL GFPVKQ VPALITLL M+ 
Sbjct: 566 TSTKAQQLLTGLQS-SDESQQLQAAIEMCQLLVMGNEETLGGFPVKQAVPALITLLQMEE 624

Query: 182 NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH 241
           NFDMMNNACRALTYMMEALPRSSAVV++AVP FLEKLQVIQCMDVAEQSLTALEMLSRRH
Sbjct: 625 NFDMMNNACRALTYMMEALPRSSAVVVEAVPVFLEKLQVIQCMDVAEQSLTALEMLSRRH 684

Query: 242 SKAILQA 248
           SKAILQA
Sbjct: 685 SKAILQA 691

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405954644|gb|EKC22028.1| Putative E3 ubiquitin-protein ligase TRIP12 [Crassostrea gigas]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/124 (83%), Positives = 114/124 (91%)

Query: 125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFD 184
           KAQQLL  LQ+ G+EDQQL A +EMCQ+LVMGNEDTL GFPVKQVVPALITLL M+HNFD
Sbjct: 350 KAQQLLQGLQSTGNEDQQLTAAIEMCQLLVMGNEDTLAGFPVKQVVPALITLLQMEHNFD 409

Query: 185 MMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA 244
           MMN+ACRALTYMMEALPRSSA+V+DAVP FLEKL+ IQCMDVAEQSLTALEMLSRRH K+
Sbjct: 410 MMNHACRALTYMMEALPRSSAIVVDAVPVFLEKLRAIQCMDVAEQSLTALEMLSRRHGKS 469

Query: 245 ILQA 248
           ILQA
Sbjct: 470 ILQA 473

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|74144015|dbj|BAE22126.1| unnamed protein product [Mus musculus]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|183985686|gb|AAI66201.1| LOC100158539 protein [Xenopus (Silurana) tropicalis]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 436 SSKAQQLLQGLQAT-DESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query: 243 KAILQA 248
           KAILQA
Sbjct: 555 KAILQA 560

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119591305|gb|EAW70899.1| thyroid hormone receptor interactor 12, isoform CRA_d [Homo sapiens]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119591308|gb|EAW70902.1| thyroid hormone receptor interactor 12, isoform CRA_g [Homo sapiens]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74182645|dbj|BAE34675.1| unnamed protein product [Mus musculus]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
           ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct: 442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query: 183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
           FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct: 501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query: 243 KAILQA 248
           KAILQA
Sbjct: 561 KAILQA 566

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
UNIPROTKB|F6X7F9	1980	TRIP12 "Uncharacterized protei	0.502	0.063	0.833	6.5e-49
UNIPROTKB|E1B7Q7	1992	TRIP12 "E3 ubiquitin-protein l	0.502	0.062	0.833	6.6e-49
UNIPROTKB|Q14669	1992	TRIP12 "E3 ubiquitin-protein l	0.502	0.062	0.833	6.6e-49
UNIPROTKB|E2R657	1993	TRIP12 "Uncharacterized protei	0.502	0.062	0.833	6.6e-49
UNIPROTKB|I3LK74	2002	TRIP12 "Uncharacterized protei	0.502	0.062	0.833	6.6e-49
UNIPROTKB|J9NRQ4	2011	TRIP12 "Uncharacterized protei	0.502	0.062	0.833	6.7e-49
MGI|MGI:1309481	2025	Trip12 "thyroid hormone recept	0.502	0.061	0.833	6.8e-49
RGD|1306607	2025	Trip12 "thyroid hormone recept	0.502	0.061	0.833	6.8e-49
UNIPROTKB|E1BZV7	2035	TRIP12 "Uncharacterized protei	0.502	0.061	0.833	8.7e-49
UNIPROTKB|B4F6W9	2056	trip12 "E3 ubiquitin-protein l	0.502	0.060	0.833	8.8e-49

UNIPROTKB|F6X7F9 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 6.5e-49, P = 6.5e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query:   243 KAILQA 248
             KAILQA
Sbjct:   561 KAILQA 566

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)]

 Score = 525 (189.9 bits), Expect = 6.6e-49, P = 6.6e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query:   243 KAILQA 248
             KAILQA
Sbjct:   555 KAILQA 560

GO:0009790 "embryo development" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 6.6e-49, P = 6.6e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query:   243 KAILQA 248
             KAILQA
Sbjct:   555 KAILQA 560

GO:0006281 "DNA repair" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA;IMP;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 6.6e-49, P = 6.6e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   436 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 494

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   495 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 554

Query:   243 KAILQA 248
             KAILQA
Sbjct:   555 KAILQA 560

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|I3LK74 TRIP12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 525 (189.9 bits), Expect = 6.6e-49, P = 6.6e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   444 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 502

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   503 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 562

Query:   243 KAILQA 248
             KAILQA
Sbjct:   563 KAILQA 568

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   455 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 513

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   514 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 573

Query:   243 KAILQA 248
             KAILQA
Sbjct:   574 KAILQA 579

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1309481 Trip12 "thyroid hormone receptor interactor 12" [Mus musculus (taxid:10090)]

 Score = 525 (189.9 bits), Expect = 6.8e-49, P = 6.8e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query:   243 KAILQA 248
             KAILQA
Sbjct:   561 KAILQA 566

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009790 "embryo development" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

RGD|1306607 Trip12 "thyroid hormone receptor interactor 12" [Rattus norvegicus (taxid:10116)]

 Score = 525 (189.9 bits), Expect = 6.8e-49, P = 6.8e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   442 SSKAQQLLQGLQA-SDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 500

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   501 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 560

Query:   243 KAILQA 248
             KAILQA
Sbjct:   561 KAILQA 566

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0009790 "embryo development" evidence=ISO;ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO;ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO;ISS

UNIPROTKB|E1BZV7 TRIP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 524 (189.5 bits), Expect = 8.7e-49, P = 8.7e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   482 SSKAQQLLQGLQAT-DESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 540

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   541 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 600

Query:   243 KAILQA 248
             KAILQA
Sbjct:   601 KAILQA 606

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

UNIPROTKB|B4F6W9 trip12 "E3 ubiquitin-protein ligase TRIP12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 524 (189.5 bits), Expect = 8.8e-49, P = 8.8e-49
 Identities = 105/126 (83%), Positives = 117/126 (92%)

Query:   123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN 182
             ++KAQQLL  LQA  DE QQLQAV+EMCQ+LVMGNE+TL GFPVK VVPALITLL M+HN
Sbjct:   478 SSKAQQLLQGLQAT-DESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN 536

Query:   183 FDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS 242
             FD+MN+ACRALTYMMEALPRSSAVV+DA+P FLEKLQVIQC+DVAEQ+LTALEMLSRRHS
Sbjct:   537 FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS 596

Query:   243 KAILQA 248
             KAILQA
Sbjct:   597 KAILQA 602

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5E870	TRIPC_MOUSE	6, ., 3, ., 2, ., -	0.8333	0.5020	0.0617	yes	N/A
B4F6W9	TRIPC_XENTR	6, ., 3, ., 2, ., -	0.8333	0.5020	0.0607	yes	N/A
F1LP64	TRIPC_RAT	6, ., 3, ., 2, ., -	0.8333	0.5020	0.0617	yes	N/A
E1B7Q7	TRIPC_BOVIN	6, ., 3, ., 2, ., -	0.8333	0.5020	0.0627	yes	N/A
F1RCR6	TRIPC_DANRE	6, ., 3, ., 2, ., -	0.8174	0.5060	0.0621	yes	N/A
Q14669	TRIPC_HUMAN	6, ., 3, ., 2, ., -	0.8333	0.5020	0.0627	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	249
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	3e-04

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 8   GGGVGGGGHHNSGSAAAAAATSGGGQGGKAATLYGAPGGGKAATLYAQSGMSAGETQGGS 67
           G   GGG     G+AAAA   +    G  +A   GA GG  AA     +G+      G S
Sbjct: 293 GLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAG--VAAGLGGVARAGAS 350

Query: 68  VAGEEDKNA--GAQGSTSTSGAASGTASTSLLSGVASSSSGPSHAPGA 113
            A    + A   A  S  +S  A   ++     G A++++  + A G 
Sbjct: 351 AAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAGAAAAGP 398

Length = 440

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG0168|consensus	1051		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
KOG0166|consensus	514		99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.17
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.89
KOG0166|consensus	514		98.72
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.28
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.26
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.03
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.91
KOG4224|consensus	550		97.77
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.63
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.31
KOG1048|consensus	717		97.31
PF05804	708	KAP: Kinesin-associated protein (KAP)	97.29
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.17
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.86
KOG4224|consensus	550		96.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	96.83
KOG2171|consensus	1075		96.64
PRK09687	280	putative lyase; Provisional	96.29
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.29
KOG2160|consensus	342		96.28
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	96.28
PRK09687	280	putative lyase; Provisional	96.25
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.25
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.04
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.94
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.74
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.6
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.33
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.05
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.99
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.88
PF05536	543	Neurochondrin: Neurochondrin	94.75
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.41
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.19
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	92.87
PF05004	309	IFRD: Interferon-related developmental regulator (	92.78
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.68
KOG1059|consensus	877		92.68
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.65
KOG1967|consensus	1030		92.56
KOG1241|consensus	859		92.19
KOG1048|consensus	717		91.99
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	91.76
KOG4199|consensus	461		91.68
COG1413	335	FOG: HEAT repeat [Energy production and conversion	91.39
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.01
KOG1293|consensus	678		90.9
KOG0567|consensus	289		90.48
KOG2171|consensus	1075		90.43
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.39
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	88.71
KOG0168|consensus	1051		88.58
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.82
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	87.48
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	86.9
KOG1820|consensus	815		86.76
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	85.89
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	85.27
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.06
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.02
TIGR02270	410	conserved hypothetical protein. Members are found	85.0
KOG2032|consensus	533		84.69
KOG1293|consensus	678		84.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	84.21
TIGR02270	410	conserved hypothetical protein. Members are found	84.01
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	83.95
COG1413	335	FOG: HEAT repeat [Energy production and conversion	83.08
KOG1824|consensus	1233		82.56
PF05536	543	Neurochondrin: Neurochondrin	81.59
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	81.07
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.82
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	80.18
PTZ00429	746	beta-adaptin; Provisional	80.16

>KOG0168|consensus

Probab=100.00  E-value=4.9e-41  Score=338.87  Aligned_cols=155  Identities=54%  Similarity=0.810  Sum_probs=148.4

Q ss_pred             cchhHHHHhhCCCCCCCCCCcc--------CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy1198          94 TSLLSGVASSSSGPSHAPGAAL--------DSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP  165 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~~~~gs~~--------~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp  165 (249)
                      .+|+|++++.|++++|+||.+.        +.+.++.++|+++||++|++..||+.||++|.||||+|+|.||+.++.||
T Consensus       129 ~grl~~~~e~~~l~qhl~g~lgprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fp  208 (1051)
T KOG0168|consen  129 AGRLQALLEARGLPQHLFGRLGPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFP  208 (1051)
T ss_pred             hhhhhhhhhccccCcccccccchhHHHHhhhcccccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhcccc
Confidence            3999999999999999999863        56667777899999999998669999999999999999999999999999


Q ss_pred             ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ++.|||.||.+|++|+|+|||+.||||||||||+.|++..+||  +|||+||+||+.|+|||||||+|+|||+||++||+
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            9999999999999999999999999999999999999999999  89999999999999999999999999999999999


Q ss_pred             HHhhc
Q psy1198         244 AILQA  248 (249)
Q Consensus       244 aIL~a  248 (249)
                      +||+|
T Consensus       289 AiL~A  293 (1051)
T KOG0168|consen  289 AILQA  293 (1051)
T ss_pred             HHHhc
Confidence            99996

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=2.5e-31  Score=251.32  Aligned_cols=148  Identities=21%  Similarity=0.185  Sum_probs=125.4

Q ss_pred             cchhHHHHhhCCC-CCCCC-CCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHH
Q psy1198          94 TSLLSGVASSSSG-PSHAP-GAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVP  171 (249)
Q Consensus        94 ~~r~q~Llkrr~l-~~~~~-gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP  171 (249)
                      +||++.|-||||+ +-... -+.+-.+--..-..+++|.+.|.| +|-..|++++.++|++||+++.|||+.++..|+||
T Consensus        39 qKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVp  117 (526)
T COG5064          39 QKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVP  117 (526)
T ss_pred             HHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccH
Confidence            5999999999998 21111 011111111222367999999999 59999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         172 ALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       172 ~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      +||+||...++.-+||||||+||||++|++.||++||  ||||.|++ ||.++..||.||++||||||++|++.
T Consensus       118 Rfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiq-lL~s~~~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         118 RFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQ-LLSSTEDDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHH-HHcCchHHHHHHHHHHhccccCCchh
Confidence            9999997666667899999999999999999999999  99999998 77778999999999999999999875

>KOG0166|consensus

Probab=99.97  E-value=6.4e-31  Score=256.40  Aligned_cols=149  Identities=25%  Similarity=0.287  Sum_probs=128.2

Q ss_pred             cchhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHH
Q psy1198          94 TSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPAL  173 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~L  173 (249)
                      .||++.|+|||+......-......+.......+.+++.++| +|+..|+.+++.+|++||.+++|||+.++..|+||+|
T Consensus        36 ~kree~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~l  114 (514)
T KOG0166|consen   36 NKREESLLKRRNDEEELMLDELLSDSQSQASNLELMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRL  114 (514)
T ss_pred             HHHHHHHHHHhhhhhhcccccccchhHHHhhhhHHHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHH
Confidence            499999999999222111111111223333447888999999 5999999999999999999999999998889999999


Q ss_pred             HHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         174 ITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       174 V~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      |+||.++++|.+|||||||||||+++++++|++||  ||||+|++ |+.++++||+|||+|||+||++|+|.-
T Consensus       115 V~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~-Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  115 VEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ-LLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             HHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH-HhcCCcHHHHHHHHHHHhccccCChHH
Confidence            99999999999999999999999999999999999  99999996 899999999999999999999999863

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.33  E-value=3.3e-12  Score=140.73  Aligned_cols=116  Identities=17%  Similarity=0.256  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.++..|++ +|+..|.+|+.-|..+.+.. +++.+.+...|.||.||++|++++++++|++|+|||+||++.+++++
T Consensus       190 aVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        190 GVDILVKLLSS-GNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            46778888888 69999999988776554332 44666677889999999999877778999999999999999999999


Q ss_pred             HHHh--ccHHHHHHHhhcCCC---------hhHHHHHHHHHHHhhhhchh
Q psy1198         205 AVVL--DAVPTFLEKLQVIQC---------MDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~y---------iDVAEQALwALenISgD~p~  243 (249)
                      ..|+  |+||.|++ ++..+.         .++.|||+|||.||+++.+.
T Consensus       268 ~~Iv~aGgIp~LI~-lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~  316 (2102)
T PLN03200        268 QAIADAGGIPALIN-ATVAPSKEFMQGEFAQALQENAMGALANICGGMSA  316 (2102)
T ss_pred             HHHHHCCCHHHHHH-HHhCcchhhhccccchHHHHHHHHHHHHHhCCchh
Confidence            9999  99999997 555444         45799999999999998655

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.17  E-value=1.5e-10  Score=86.88  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=87.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.+++-|++ +++.....++..|.++-.. .++....+...+++|.|+++|+. ++++++..|+|+|+||+...+....
T Consensus         9 i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           9 LPALVSLLSS-SDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             hHHHHHHHHc-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence            6677888887 4777888888888875544 23333345556999999999986 4799999999999999999887777


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      .++  |.+|.|++ ++.....++.|+++|+|.+|+
T Consensus        86 ~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhh
Confidence            666  89999997 666678999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.96  E-value=2.8e-09  Score=79.97  Aligned_cols=79  Identities=22%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      |...++||.|+++|++. ++++...|+|||.||++..|+....++  +.+|.|++ ++..++.+|++.++|+|.||+.+.
T Consensus         3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~-~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQ-LLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH-HHhCCCHHHHHHHHHHHHHHccCc
Confidence            34568999999999865 589999999999999999999988888  99999997 677788999999999999999988


Q ss_pred             hhH
Q psy1198         242 SKA  244 (249)
Q Consensus       242 p~a  244 (249)
                      +..
T Consensus        81 ~~~   83 (120)
T cd00020          81 EDN   83 (120)
T ss_pred             HHH
Confidence            643

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.89  E-value=3.7e-09  Score=117.19  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=91.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198         129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL  208 (249)
Q Consensus       129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV  208 (249)
                      ||.-|.. .+.+.|-.+...|+.+. ..+++.+..+...+.||.||++|+++ ++++|..|+|+|-||+.++++++..|+
T Consensus       409 LV~LL~~-~~~evQ~~Av~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIi  485 (2102)
T PLN03200        409 LVGLITM-ATADVQEELIRALSSLC-CGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAIT  485 (2102)
T ss_pred             hhhhhcc-CCHHHHHHHHHHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444555 47788888888887755 33455555677789999999999975 689999999999999999999998888


Q ss_pred             --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                        |+||.|++ |+.+++.++.|+|+|+|.||+.+.
T Consensus       486 eaGaIP~LV~-LL~s~~~~iqeeAawAL~NLa~~~  519 (2102)
T PLN03200        486 AAGGIPPLVQ-LLETGSQKAKEDSATVLWNLCCHS  519 (2102)
T ss_pred             HCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCc
Confidence              99999996 888899999999999999999854

>KOG0166|consensus

Probab=98.72  E-value=5.8e-08  Score=96.19  Aligned_cols=116  Identities=19%  Similarity=0.288  Sum_probs=91.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC------------------------
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH------------------------  181 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~------------------------  181 (249)
                      ++-|+.-|++ .|+...-.++-.++- |+...++.|..++..++||+||++|.+..                        
T Consensus       239 Lp~L~~ll~~-~D~~Vl~Da~WAlsy-Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~  316 (514)
T KOG0166|consen  239 LPALLRLLHS-TDEEVLTDACWALSY-LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV  316 (514)
T ss_pred             HHHHHHHHhc-CCHHHHHHHHHHHHH-HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence            3444455678 488888777777765 44556788888888899999999997632                        


Q ss_pred             ------------------CccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         182 ------------------NFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       182 ------------------n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                                        ...+--||||.|.||..|+++|.+.|+  |.+|.|++ |++....|+.-.|.||+.|+...+
T Consensus       317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~-~l~~~ef~~rKEAawaIsN~ts~g  395 (514)
T KOG0166|consen  317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN-LLQTAEFDIRKEAAWAISNLTSSG  395 (514)
T ss_pred             HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH-HHhccchHHHHHHHHHHHhhcccC
Confidence                              112567899999999999999999999  99999997 666666899999999999987665


Q ss_pred             hhH
Q psy1198         242 SKA  244 (249)
Q Consensus       242 p~a  244 (249)
                      ..+
T Consensus       396 ~~~  398 (514)
T KOG0166|consen  396 TPE  398 (514)
T ss_pred             CHH
Confidence            544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.41  E-value=4.6e-07  Score=59.81  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             CchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         200 LPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       200 tp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      +|++...|+  |+||.|++ |+..++.+|.|+|+|||.||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQ-LLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHH-HTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHH-HHcCCCHHHHHHHHHHHHHHhC
Confidence            367788888  99999997 8888999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.28  E-value=5.4e-06  Score=60.52  Aligned_cols=88  Identities=30%  Similarity=0.328  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|++.|.++.|+..+..++.-|++            +....++|.|+++|+ ++++.++..|+|+|-+|-+  +    
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~------------~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~--~----   61 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGE------------LGDPEAIPALIELLK-DEDPMVRRAAARALGRIGD--P----   61 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHC------------CTHHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHH--H----
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC--H----
Confidence            46788889444689999888887772            233478999999995 5689999999999999832  2    


Q ss_pred             HHhccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198         206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALE  235 (249)
Q Consensus       206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALe  235 (249)
                         .++|.|++.|.+.+...|++.|+++|+
T Consensus        62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 ---EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               478999986666666778999999985

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.26  E-value=1.5e-06  Score=59.91  Aligned_cols=54  Identities=22%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             ccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         183 FDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       183 ~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                      |.++..|+|+|-+|++..++.....+ ..+|.|+. ++..+..+|++.|+|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIP-LLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence            46788999999999999999998888 99999997 44556679999999999987

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.03  E-value=8.3e-06  Score=59.54  Aligned_cols=63  Identities=29%  Similarity=0.393  Sum_probs=52.9

Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      ||.|++.|..+.++.++..|+|+|.++-+  +       .++|.|++ +++.++.+|+.+|+|+|++|-.+..
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~~~~~   63 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P-------EAIPALIE-LLKDEDPMVRRAAARALGRIGDPEA   63 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H-------HHHHHHHH-HHTSSSHHHHHHHHHHHHCCHHHHT
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H-------hHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCHHH
Confidence            68999999778899999999999996643  2       56899997 5578999999999999999964433

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.91  E-value=1.4e-05  Score=77.43  Aligned_cols=112  Identities=13%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++-|..-|++ .|+.....|+=.++- ||-..++-|+.+...++.++||++|+++ +..+|--|-|.+-||.-|+-.||.
T Consensus       245 lpiL~KLiys-~D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTq  321 (526)
T COG5064         245 LPILAKLIYS-RDPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQ  321 (526)
T ss_pred             HHHHHHHHhh-cCHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCcccee
Confidence            3444445678 488888777766653 4555566677777779999999999975 478899999999999999999999


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      +++  |+++.|.. ||+++...++..+.|++-||..-.
T Consensus       322 viI~~G~L~a~~~-lLs~~ke~irKEaCWTiSNITAGn  358 (526)
T COG5064         322 VIINCGALKAFRS-LLSSPKENIRKEACWTISNITAGN  358 (526)
T ss_pred             hheecccHHHHHH-HhcChhhhhhhhhheeecccccCC
Confidence            999  99999996 889999999999999999997543

>KOG4224|consensus

Probab=97.77  E-value=4.7e-05  Score=74.28  Aligned_cols=117  Identities=18%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .++-+|..+++ .|++.|.-+++.+..+-.-...--+-.-....+||.||.++.. .++.++..|.-||-||++-+..|-
T Consensus       209 ~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~kvkcqA~lALrnlasdt~Yq~  286 (550)
T KOG4224|consen  209 GLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-GSDKVKCQAGLALRNLASDTEYQR  286 (550)
T ss_pred             Cchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-CChHHHHHHHHHHhhhcccchhhh
Confidence            35667888888 5999998888776543322111111000012499999999975 468999999999999999999888


Q ss_pred             HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ..|- |++|.+++ |+.++++-+--..+-|+.|||--...+
T Consensus       287 eiv~ag~lP~lv~-Llqs~~~plilasVaCIrnisihplNe  326 (550)
T KOG4224|consen  287 EIVEAGSLPLLVE-LLQSPMGPLILASVACIRNISIHPLNE  326 (550)
T ss_pred             HHHhcCCchHHHH-HHhCcchhHHHHHHHHHhhcccccCcc
Confidence            7666 99999996 778888666666889999998644333

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.70  E-value=5e-05  Score=50.02  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198         164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMME  198 (249)
Q Consensus       164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas  198 (249)
                      +...|.||.|+++|+ +.++++|.+|+|||.||++
T Consensus         8 i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    8 IVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred             HHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence            345699999999999 4679999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.63  E-value=0.00035  Score=63.71  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         182 NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       182 n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      +.++|..+-|+|+|| +.+++.-..+...||.|++ |+...+..+.+|+|++|-|+|....
T Consensus       108 ns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~  166 (254)
T PF04826_consen  108 NSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPD  166 (254)
T ss_pred             CCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHH
Confidence            578999999999999 4555554444499999996 7888899999999999999997543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.60  E-value=0.00012  Score=46.57  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             hhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         202 RSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       202 ~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      +....++  |+||.|++ |+..++.++.++++|+|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHcC
Confidence            4455566  99999997 7778899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.31  E-value=0.00078  Score=61.44  Aligned_cols=77  Identities=22%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             CccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         165 PVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       165 p~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ...+-+..|+.+|+..++|.+|-.|..+|.|. .++| .++.++   |.||.+.. |++.++..+.|+++|||.|+|.+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~-~nq~~Ir~~Ggi~lI~~-lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFP-FNQDIIRDLGGISLIGS-LLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccCh-hHHHHHHHcCCHHHHHH-HcCCCChHHHHHHHHHHHhcCCCh
Confidence            34566799999999888899999999999996 4566 555555   99999996 888899999999999999999876


Q ss_pred             hhH
Q psy1198         242 SKA  244 (249)
Q Consensus       242 p~a  244 (249)
                      ...
T Consensus        86 en~   88 (254)
T PF04826_consen   86 ENQ   88 (254)
T ss_pred             hhH
Confidence            543

>KOG1048|consensus

Probab=97.31  E-value=0.00039  Score=71.70  Aligned_cols=113  Identities=23%  Similarity=0.255  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch--
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR--  202 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~--  202 (249)
                      .+++.+..|.+ .|+..|..|--. -++|++.++..-..+-.-+=||.||.+|.+ .+.++|..|||||=|+.-+...  
T Consensus       234 ~lpe~i~mL~~-q~~~~qsnaaay-lQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  234 TLPEVISMLMS-QDPSVQSNAAAY-LQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             ccHHHHHHHhc-cChhhhHHHHHH-HHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcc
Confidence            45777888887 588888755332 355666554443345555889999999975 5799999999999999998887  


Q ss_pred             hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         203 SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       203 qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      .--+|.  +-||.+++.|-.+.+.||+|++--+|=|+|--
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~  350 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN  350 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence            444455  99999999888889999999998888777653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=97.29  E-value=0.001  Score=68.73  Aligned_cols=109  Identities=23%  Similarity=0.259  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++-|+..|.+ +++...+.++.-|.+ ||.-. ++-+.+...++||.|+++|..+ +.+++..+.|+|.|+..- ++--.
T Consensus       292 V~~Lv~~Ldr-~n~ellil~v~fLkk-LSi~~-ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd-~~~R~  366 (708)
T PF05804_consen  292 VSLLVKCLDR-ENEELLILAVTFLKK-LSIFK-ENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFD-PELRS  366 (708)
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHH-HcCCH-HHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcC-HHHHH
Confidence            3556667777 466666656665544 55532 2334466789999999999875 589999999999999764 33445


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      .+|  |.||.|+. |+..  .+..+=|+..|.+||.|..
T Consensus       367 ~mV~~GlIPkLv~-LL~d--~~~~~val~iLy~LS~dd~  402 (708)
T PF05804_consen  367 QMVSLGLIPKLVE-LLKD--PNFREVALKILYNLSMDDE  402 (708)
T ss_pred             HHHHCCCcHHHHH-HhCC--CchHHHHHHHHHHhccCHh
Confidence            566  99999997 5553  3566679999999998743

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.17  E-value=0.00032  Score=44.61  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198         164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMME  198 (249)
Q Consensus       164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas  198 (249)
                      +...+.+|.|+++|+. ++++++..|+|+|.||+.
T Consensus         8 i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        8 VVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence            4456799999999984 579999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.86  E-value=0.0068  Score=59.63  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198         129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL  208 (249)
Q Consensus       129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV  208 (249)
                      |++.|++. +......++.-|.++|....  + +.. ...+.+.|...|.++ ++.++..++|.|-++..........++
T Consensus        43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~--~-~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   43 LFDCLNTS-NREQVELICDILKRLLSALS--P-DSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHhhc-ChHHHHHHHHHHHHHHhccC--H-HHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            56677763 55554455566777776431  1 122 457889999999864 699999999999999988777677676


Q ss_pred             --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                        +.+|.++. ++..++.+|++.|+.+|.+|+...
T Consensus       117 ~~~l~~~i~~-~L~~~d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen  117 DNELLPLIIQ-CLRDPDLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             CccHHHHHHH-HHcCCcHHHHHHHHHHHHHHhCCc
Confidence              88999997 667799999999999999999744

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4224|consensus

Probab=96.84  E-value=0.0096  Score=58.60  Aligned_cols=107  Identities=19%  Similarity=0.178  Sum_probs=74.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC--CCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMG--NEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSms--nep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ++-+|+-|++. --...++.+--+| .+++.  |+-+   +...||+..||.+|...+|.++|..|...|-|++--.-..
T Consensus       294 lP~lv~Llqs~-~~plilasVaCIr-nisihplNe~l---I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n  368 (550)
T KOG4224|consen  294 LPLLVELLQSP-MGPLILASVACIR-NISIHPLNEVL---IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN  368 (550)
T ss_pred             chHHHHHHhCc-chhHHHHHHHHHh-hcccccCcccc---eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence            45566666652 2223334443333 34442  2222   4556999999999999999999999999999999766666


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      ..++.  ||||.|.+.|++. ...|.|..--|+-.++
T Consensus       369 ~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~La  404 (550)
T KOG4224|consen  369 VSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLA  404 (550)
T ss_pred             hHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHH
Confidence            66666  9999999977775 4678877666665544

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=96.83  E-value=0.0021  Score=66.49  Aligned_cols=88  Identities=19%  Similarity=0.190  Sum_probs=71.4

Q ss_pred             HhhcCCCCCCCC-CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHH
Q psy1198         152 MLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAE  228 (249)
Q Consensus       152 lLSmsnep~I~~-fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAE  228 (249)
                      +|.++.++.+.. +-..++|+.||++|+++ ++++...+.++|.++ +.+.+....++  |+||.|+ ||+.+++.|+.+
T Consensus       273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~-kLl~s~~~~l~~  349 (708)
T PF05804_consen  273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLL-KLLPSENEDLVN  349 (708)
T ss_pred             HHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHH-HHhcCCCHHHHH
Confidence            444554444442 55679999999999875 789999999999987 45677777677  9999999 599999999999


Q ss_pred             HHHHHHHHhhhhch
Q psy1198         229 QSLTALEMLSRRHS  242 (249)
Q Consensus       229 QALwALenISgD~p  242 (249)
                      .++++|-|+|-|.-
T Consensus       350 ~aLrlL~NLSfd~~  363 (708)
T PF05804_consen  350 VALRLLFNLSFDPE  363 (708)
T ss_pred             HHHHHHHHhCcCHH
Confidence            99999999997753

>KOG2171|consensus

Probab=96.64  E-value=0.0058  Score=65.58  Aligned_cols=113  Identities=20%  Similarity=0.154  Sum_probs=82.4

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--  208 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--  208 (249)
                      ..|++ .+|..+..|+..+-++= -.-.|.+...-.+.+.|.|+..|....++.+|..||-||-|..+..+...-.=.  
T Consensus       396 ~~l~D-phprVr~AA~naigQ~s-tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd  473 (1075)
T KOG2171|consen  396 NGLND-PHPRVRYAALNAIGQMS-TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD  473 (1075)
T ss_pred             hhcCC-CCHHHHHHHHHHHHhhh-hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34566 68888998888877642 222344444434678889999999999999999999999999997775432111  


Q ss_pred             ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      +.+..+...|++..+..|.||++.||+-||-......
T Consensus       474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F  510 (1075)
T KOG2171|consen  474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF  510 (1075)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence            4444333356788999999999999999987655543

>PRK09687 putative lyase; Provisional

Probab=96.29  E-value=0.041  Score=50.51  Aligned_cols=103  Identities=17%  Similarity=0.053  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-----
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP-----  201 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp-----  201 (249)
                      ..++.-+++ +|+.....+..-|.++ -..  +.    +....+|.|..++.++.++++...|+.+|-++.+..+     
T Consensus        57 ~~l~~ll~~-~d~~vR~~A~~aLg~l-g~~--~~----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~  128 (280)
T PRK09687         57 RLAIELCSS-KNPIERDIGADILSQL-GMA--KR----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK  128 (280)
T ss_pred             HHHHHHHhC-CCHHHHHHHHHHHHhc-CCC--cc----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH
Confidence            333333455 5777777777666662 111  00    0234667777765556667777777777777643221     


Q ss_pred             --h-----------hHHH-Hh---------ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         202 --R-----------SSAV-VL---------DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       202 --~-----------qT~~-VV---------GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                        +           .++. ++         -+||.|++ ++.-++.+|+..|+++|++|.
T Consensus       129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~-~L~d~~~~VR~~A~~aLg~~~  187 (280)
T PRK09687        129 IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN-LLKDPNGDVRNWAAFALNSNK  187 (280)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH-HhcCCCHHHHHHHHHHHhcCC
Confidence              0           1111 11         56888886 556677789999999999883

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.29  E-value=0.0065  Score=52.05  Aligned_cols=115  Identities=22%  Similarity=0.289  Sum_probs=73.4

Q ss_pred             HHHHHHHH---hcCCCHHHHHHHHHHHHHHhhcC-CCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198         126 AQQLLVSL---QAIGDEDQQLQAVVEMCQMLVMG-NEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEA  199 (249)
Q Consensus       126 l~~Ll~~L---~S~~D~~~QLeAL~eLrelLSms-nep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg  199 (249)
                      +++|+..+   .++.|=..+.++++.|+.++.-. .++..+.|.  ...+++.++..++ +.+..+.-+||.+|..|+..
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~   83 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQ   83 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence            44444444   44457888999999999998764 111111111  1134445555554 34678999999999999999


Q ss_pred             CchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         200 LPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       200 tp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      +.......+ -.+|.|++++-+ +..-+++.|..||..|....+
T Consensus        84 l~~~~~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~  126 (228)
T PF12348_consen   84 LGSHFEPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS  126 (228)
T ss_dssp             HGGGGHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred             HhHhHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC
Confidence            999987778 899999975544 667899999999999998877

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2160|consensus

Probab=96.28  E-value=0.043  Score=52.70  Aligned_cols=113  Identities=18%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             HHHHh-cCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198         130 LVSLQ-AIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL  208 (249)
Q Consensus       130 l~~L~-S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV  208 (249)
                      ...++ +.-|+.....|+.+|.++.--  =|+-..|..-+..+.++..|++ .++.|--.|||.|+.++.-+|..-..|+
T Consensus        87 ~~~~~~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~  163 (342)
T KOG2160|consen   87 IVILNSSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVI  163 (342)
T ss_pred             hhccCcccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34444 234777788888888776632  1222235555666666668875 4699999999999999999999988888


Q ss_pred             --ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         209 --DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       209 --GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                        |+.+.|...|-..+++++.-+||-|+..+.+.++..+
T Consensus       164 E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~  202 (342)
T KOG2160|consen  164 ELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ  202 (342)
T ss_pred             HcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence              9999999877777889999999999999988877654

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.28  E-value=0.0026  Score=50.13  Aligned_cols=54  Identities=9%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             cchhHHHHhhCCCC--CCCCCCcc---Ccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy1198          94 TSLLSGVASSSSGP--SHAPGAAL---DSE--SEDTATKAQQLLVSLQAIGDEDQQLQAVVE  148 (249)
Q Consensus        94 ~~r~q~Llkrr~l~--~~~~gs~~---~~~--~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~e  148 (249)
                      .||++.|+|||++.  ++......   ...  .......++.||.+++| +|+..||+|+++
T Consensus        37 ~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S-~d~~~ql~Atq~   97 (97)
T PF01749_consen   37 QKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNS-DDPEVQLEATQQ   97 (97)
T ss_dssp             HHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTS-SCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCC-CCHHHHHHhhCC
Confidence            49999999999975  22211111   111  24556778899999999 699999999874

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>PRK09687 putative lyase; Provisional

Probab=96.25  E-value=0.031  Score=51.28  Aligned_cols=63  Identities=24%  Similarity=0.247  Sum_probs=39.8

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      ...+|.|+.+|+. .++++...|+++|-+|....|       .++|.|++ ++.-++.+|+.-|+|+|++|-
T Consensus       158 ~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~-------~~~~~L~~-~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP-------DIREAFVA-MLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH-------HHHHHHHH-HhcCCChHHHHHHHHHHHccC
Confidence            4567777777764 456777777777777733333       34556664 445566667777777776653

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.25  E-value=0.014  Score=45.80  Aligned_cols=82  Identities=15%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..+++++..|++ +.+..+-.+|..|++++...+++.   .....++..|...|++++ +=+=+-|.++|..+++..|+.
T Consensus         3 ~~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~~~~---~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~   77 (92)
T PF10363_consen    3 ETLQEALSDLND-PLPPVRAHGLVLLRKLIESKSEPV---IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE   77 (92)
T ss_pred             HHHHHHHHHccC-CCcchHHHHHHHHHHHHHcCCcch---hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence            568899999998 688899999999999997754122   334578888888888654 667789999999999999873


Q ss_pred             HHHHhccHHHHHH
Q psy1198         204 SAVVLDAVPTFLE  216 (249)
Q Consensus       204 T~~VVGAVPiL~~  216 (249)
                            .+|.|++
T Consensus        78 ------vl~~L~~   84 (92)
T PF10363_consen   78 ------VLPILLD   84 (92)
T ss_pred             ------HHHHHHH
Confidence                  3577776

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.04  E-value=0.063  Score=52.92  Aligned_cols=113  Identities=13%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV  206 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~  206 (249)
                      +.+..+|++ +++..+.-++.++++++-.. +..+.-+...+++|.++.+|..+ +.++...|+.+|.+|++- +.....
T Consensus        80 ~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~-~~~~~~  155 (503)
T PF10508_consen   80 PFLQRGLTH-PSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASH-PEGLEQ  155 (503)
T ss_pred             HHHHHHhcC-CCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCC-chhHHH
Confidence            344567887 58888888999998877432 33334466789999999999754 589999999999999984 445555


Q ss_pred             Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         207 VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       207 VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ++  +.++.|.+ |+.-++..++=++++++-+|+.-++..
T Consensus       156 l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  156 LFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             HhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            65  77888886 665556667778999999988766553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.94  E-value=0.062  Score=56.43  Aligned_cols=98  Identities=21%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .++.|++.|++ +|+.....|++.|.++-            ...++|.|++.|+ ++++++...|+.+|..|.+..+...
T Consensus       622 ~~~~L~~~L~D-~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~~~~  687 (897)
T PRK13800        622 SVAELAPYLAD-PDPGVRRTAVAVLTETT------------PPGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLPPAP  687 (897)
T ss_pred             hHHHHHHHhcC-CCHHHHHHHHHHHhhhc------------chhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCchH
Confidence            46778888887 69999999999887753            1357899999995 5578999999999988866443210


Q ss_pred             --------------HHHh--------ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         205 --------------AVVL--------DAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       205 --------------~~VV--------GAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                                    ..++        +.++.|++ ++..++.+|+..++++|..|
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~-~L~D~d~~VR~~Av~aL~~~  741 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA-ALGDPDHRVRIEAVRALVSV  741 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence                          0111        12344554 55666777777777777776

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.74  E-value=0.017  Score=48.05  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC--------CCCccHHHHHHHHHHHH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM--------DHNFDMMNNACRALTYM  196 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~--------e~n~dLQ~eAArALTNI  196 (249)
                      ..+.++..|++. ....  +-|.+|+..|...+-.-+..|...+=+..|+++|..        +++.+++.++.+||-.|
T Consensus        67 ~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            445567777763 2222  567788877766433335567666667777777752        35678999999999999


Q ss_pred             HhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         197 MEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       197 asgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                      +.-... ...|+   +.|+.|+. .+.++++.+..+++..|--|
T Consensus       144 ~n~~~G-~~~v~~~~~~v~~i~~-~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  144 MNTKYG-LEAVLSHPDSVNLIAL-SLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             TSSHHH-HHHHHCSSSHHHHHHH-T--TTSHHHHHHHHHHHHHH
T ss_pred             HccHHH-HHHHHcCcHHHHHHHH-HHCCCCHHHHHHHHHHHHHH
Confidence            985433 34444   99999996 67789999999999988765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.60  E-value=0.043  Score=46.49  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=81.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh---cCchhHH
Q psy1198         129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME---ALPRSSA  205 (249)
Q Consensus       129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas---gtp~qT~  205 (249)
                      |..-|++ .+++....++.-+.-.......+.+..- ...++..|+++|+.++.+.+...|+.+|+.|++   +.|+-++
T Consensus        30 i~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R  107 (165)
T PF08167_consen   30 INSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR  107 (165)
T ss_pred             HHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            4444577 4777777777666555544322221111 246899999999998889999999999999986   4555577


Q ss_pred             HHh-ccHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhchhH
Q psy1198         206 VVL-DAVPTFLEKLQVIQC-MDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       206 ~VV-GAVPiL~~kLLsi~y-iDVAEQALwALenISgD~p~a  244 (249)
                      .++ .-+|.|++-|+.... .++.|.++.+|..+-..+|..
T Consensus       108 ei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  108 EIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             HHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence            776 778888777776543 688999999999998888764

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.33  E-value=0.027  Score=35.26  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         211 VPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       211 VPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      +|.|++ +++-++.+|++.|+++|++|+.
T Consensus         2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQ-LLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHH-HHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence            799996 7788999999999999999976

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.05  E-value=0.069  Score=44.33  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      .++..|+++|+..+++...-.||-=|..++.-.|+--..+-  |+=..+.+ |++.++.||+.|||.|+.+|-.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence            68999999997767788888999999999999998655444  77777775 8888999999999999998743

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.99  E-value=0.039  Score=34.55  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=26.3

Q ss_pred             hHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198         169 VVPALITLLSMDHNFDMMNNACRALTYMMEA  199 (249)
Q Consensus       169 lVP~LV~iLs~e~n~dLQ~eAArALTNIasg  199 (249)
                      ++|.|+++|++ +++++...|++||.+|++.
T Consensus         1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence            58999999985 5799999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.88  E-value=0.13  Score=40.56  Aligned_cols=90  Identities=12%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhc
Q psy1198         142 QLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQV  220 (249)
Q Consensus       142 QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLs  220 (249)
                      -|.+|...+.-|...    +... .+.++|.++.++.. ++..+.+-||-+|+||+.......-.-. ...+.|++ |..
T Consensus         6 gli~Laa~ai~l~~~----~~~~-l~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~k-l~~   78 (97)
T PF12755_consen    6 GLIGLAAVAIALGKD----ISKY-LDEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCK-LSA   78 (97)
T ss_pred             HHHHHHHHHHHchHh----HHHH-HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence            355555555544332    2222 24689999999975 5699999999999999998876543333 78888885 776


Q ss_pred             CCChhHHHHHHHHHHHhhh
Q psy1198         221 IQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       221 i~yiDVAEQALwALenISg  239 (249)
                      -++.+|..-| +.|.++=+
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            6677766544 77766543

>PF05536 Neurochondrin: Neurochondrin

Probab=94.75  E-value=0.11  Score=52.17  Aligned_cols=75  Identities=23%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      -.-||.|+++|.......+.-+|.-||+.|+ .+|+--.+++  |+||.||+-+.+  ..-..|+++..|.++..+....
T Consensus        97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~  173 (543)
T PF05536_consen   97 VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQK  173 (543)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchh
Confidence            4789999999987766689999999999999 7777777777  999999996665  5567899999999987776643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.41  E-value=0.033  Score=52.84  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHH
Q psy1198         137 GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFL  215 (249)
Q Consensus       137 ~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~  215 (249)
                      .+|-.|...++-|+++.....+..    ....+++.+..+|+ ..++.+.++|++++.++..-.+     ++ .+++.|+
T Consensus       204 ~~~~~q~~il~~l~~~~~~~~~~~----~~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~  273 (526)
T PF01602_consen  204 PDPWLQIKILRLLRRYAPMEPEDA----DKNRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLI  273 (526)
T ss_dssp             CSHHHHHHHHHHHTTSTSSSHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhcccCChhhh----hHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHH
Confidence            577777666666654332211100    00357888888887 4578999999999998776333     44 8899999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198         216 EKLQVIQCMDVAEQSLTALEMLSRRHSKAIL  246 (249)
Q Consensus       216 ~kLLsi~yiDVAEQALwALenISgD~p~aIL  246 (249)
                      . |+..++.++.--+|++|..|+...+..+.
T Consensus       274 ~-lL~s~~~nvr~~~L~~L~~l~~~~~~~v~  303 (526)
T PF01602_consen  274 K-LLSSSDPNVRYIALDSLSQLAQSNPPAVF  303 (526)
T ss_dssp             H-HHTSSSHHHHHHHHHHHHHHCCHCHHHHG
T ss_pred             H-HhhcccchhehhHHHHHHHhhcccchhhh
Confidence            5 77788899999999999999998866553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.19  E-value=0.28  Score=46.59  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-c
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-D  209 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-G  209 (249)
                      ..+.+ +++..+-.|+..+.++....  |.  .++.. ++|.+.++|. +.++.++..|+.+|..| .-.|+.-..++ .
T Consensus       121 ~ll~~-~~~~VRk~A~~~l~~i~~~~--p~--~~~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~  192 (526)
T PF01602_consen  121 KLLSD-PSPYVRKKAALALLKIYRKD--PD--LVEDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYKSLIPK  192 (526)
T ss_dssp             HHHHS-SSHHHHHHHHHHHHHHHHHC--HC--CHHGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHH
T ss_pred             HHhcC-CchHHHHHHHHHHHHHhccC--HH--HHHHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhhhhHHH
Confidence            34454 46666666666666666552  11  13333 6777777774 44577777777777777 32333222222 4


Q ss_pred             cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      .++.|++ ++.....-+.-.+++.|.++....+.
T Consensus       193 ~~~~L~~-~l~~~~~~~q~~il~~l~~~~~~~~~  225 (526)
T PF01602_consen  193 LIRILCQ-LLSDPDPWLQIKILRLLRRYAPMEPE  225 (526)
T ss_dssp             HHHHHHH-HHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred             HHHHhhh-cccccchHHHHHHHHHHHhcccCChh
Confidence            4555553 33556666677777777776664443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=93.54  E-value=0.061  Score=36.82  Aligned_cols=30  Identities=30%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             ccChHHHHHHhcCCCCCccHHHHHHHHHHHH
Q psy1198         166 VKQVVPALITLLSMDHNFDMMNNACRALTYM  196 (249)
Q Consensus       166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNI  196 (249)
                      ...++|.|+.+|++ +++++...|||||.||
T Consensus        26 ~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen   26 LPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            34789999999965 4569999999999886

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=92.87  E-value=0.57  Score=49.36  Aligned_cols=59  Identities=27%  Similarity=0.223  Sum_probs=35.5

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALE  235 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALe  235 (249)
                      ...++.|+.+|+. .++++..+|+|+|..+ .+.|       .+++.|.+ +++-++.+|+..+.++|+
T Consensus       837 ~~a~~~L~~~L~D-~~~~VR~~A~~aL~~~-~~~~-------~a~~~L~~-al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        837 DVAVPALVEALTD-PHLDVRKAAVLALTRW-PGDP-------AARDALTT-ALTDSDADVRAYARRALA  895 (897)
T ss_pred             cchHHHHHHHhcC-CCHHHHHHHHHHHhcc-CCCH-------HHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence            4556666666653 3467777777777665 1222       23555553 555567777777777775

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.78  E-value=0.78  Score=42.88  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC---ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP---VKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp---~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      .++++.|+.+... .......+|..++++|...  . +..|.   ...++..|.++|++... +=|..|+++|.-++=-+
T Consensus        43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~--~-~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSR--Y-LPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTL  117 (309)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc--c-cHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhc
Confidence            4577888888764 5667788999999999663  1 11222   23678888999987654 66788989877665432


Q ss_pred             --chhHHHHh-ccHHHHHHHhhcC-CChhHHHHHHHHHHHh---hhhchhHHh
Q psy1198         201 --PRSSAVVL-DAVPTFLEKLQVI-QCMDVAEQSLTALEML---SRRHSKAIL  246 (249)
Q Consensus       201 --p~qT~~VV-GAVPiL~~kLLsi-~yiDVAEQALwALenI---SgD~p~aIL  246 (249)
                        ......|. ...|+|.+-+... ..+.++..|+.||+.+   ..+.+.++.
T Consensus       118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~  170 (309)
T PF05004_consen  118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE  170 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH
Confidence              35566666 8899999866653 3567878899999875   444444443

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.68  E-value=0.29  Score=44.88  Aligned_cols=119  Identities=20%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhc------CCCCCccHHHHHHHHH
Q psy1198         124 TKAQQLLVSLQAI---GDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLL------SMDHNFDMMNNACRAL  193 (249)
Q Consensus       124 ~rl~~Ll~~L~S~---~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iL------s~e~n~dLQ~eAArAL  193 (249)
                      .-++.+++.|++.   +|...|..+++.|..+|...   ..- .|-..+.|+.|+++|      ++..++++|++++=||
T Consensus       146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~---~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l  222 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK---EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL  222 (312)
T ss_dssp             HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH---HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc---hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence            3456666666541   13334567788888887442   111 244578999999999      5566899999988776


Q ss_pred             HHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198         194 TYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL  246 (249)
Q Consensus       194 TNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL  246 (249)
                      - +++-.++....++  +.||.|++-+..+.-..|.-=|+.+|-|+....++.++
T Consensus       223 W-lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~  276 (312)
T PF03224_consen  223 W-LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI  276 (312)
T ss_dssp             H-HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             H-HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence            5 3455666777776  99999999888888899999999999999887775443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059|consensus

Probab=92.68  E-value=0.59  Score=49.33  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC------------------------
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM------------------------  179 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~------------------------  179 (249)
                      --|+++++.|.+ +||..|=.|+.=+||+--....+-   +   .+.|.|.++|..                        
T Consensus       181 ~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPkny---L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL  253 (877)
T KOG1059|consen  181 PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNY---L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL  253 (877)
T ss_pred             hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCccc---c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence            456889999987 699999999999999764422111   1   355555555532                        


Q ss_pred             --------------CCCccHHHHHHHHHH--HHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         180 --------------DHNFDMMNNACRALT--YMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       180 --------------e~n~dLQ~eAArALT--NIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                                    ....-|-||+.+++-  ||.+|.|+++..+-=.|..|-- |.+.++.+|.=-.|-|+.+|..-||+
T Consensus       254 gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~-fiedsDqNLKYlgLlam~KI~ktHp~  332 (877)
T KOG1059|consen  254 GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI-FIEDSDQNLKYLGLLAMSKILKTHPK  332 (877)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh-hhhcCCccHHHHHHHHHHHHhhhCHH
Confidence                          223456667666653  6777777777765545555543 55667888999999999999999999


Q ss_pred             HHhh
Q psy1198         244 AILQ  247 (249)
Q Consensus       244 aIL~  247 (249)
                      +|.+
T Consensus       333 ~Vqa  336 (877)
T KOG1059|consen  333 AVQA  336 (877)
T ss_pred             HHHH
Confidence            9754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.65  E-value=0.97  Score=38.32  Aligned_cols=99  Identities=12%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccH-HHHHHH
Q psy1198         139 EDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAV-PTFLEK  217 (249)
Q Consensus       139 ~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAV-PiL~~k  217 (249)
                      |...-.++.-++++.-+-  |+   + .+.++|.+..+|..+ +|.+...|..+|+++...-.--..   |-+ ..++. 
T Consensus         2 ~~vR~n~i~~l~DL~~r~--~~---~-ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~-   70 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRY--PN---L-VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILK-   70 (178)
T ss_pred             HHHHHHHHHHHHHHHHhC--cH---H-HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHH-
Confidence            444455666677766552  33   2 478999999999854 699999999999999864221111   444 77775 


Q ss_pred             hhcCCChhHHHHHHHHHHHhhhh-chhHHhhc
Q psy1198         218 LQVIQCMDVAEQSLTALEMLSRR-HSKAILQA  248 (249)
Q Consensus       218 LLsi~yiDVAEQALwALenISgD-~p~aIL~a  248 (249)
                      ++.-++.+|++.|..+|..++.. .|..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~  102 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKRNPNIIYNN  102 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            55557899999999999999998 77766543

>KOG1967|consensus

Probab=92.56  E-value=0.52  Score=50.67  Aligned_cols=117  Identities=22%  Similarity=0.279  Sum_probs=80.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-EDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-ep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++.+++++.+ .+....-.=+..|.-+|..-. +-.++.||  .+.|.|++.|+.++ +++|..+-++|--...-.+.-+
T Consensus       869 vP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~--~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  869 VPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFP--MLLPLLLQALSMPD-VIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchh--hHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhccccc
Confidence            3666677764 244443344555566665321 12222344  79999999999875 8999999999988777666554


Q ss_pred             HHHh-ccHHHHHHHhhcCCC---hhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         205 AVVL-DAVPTFLEKLQVIQC---MDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLLsi~y---iDVAEQALwALenISgD~p~aIL~  247 (249)
                      ..=+ -.||.|+. |-...+   +-|+|-||+||+.|.+.-|...|.
T Consensus       945 t~~~~Tlvp~lLs-ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~  990 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLS-LSSDNDNNMMVVREDALQCLNALTRRLPTKSLL  990 (1030)
T ss_pred             hHHHhHHHHHHHh-cCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence            4445 78999997 655443   779999999999999977765443

>KOG1241|consensus

Probab=92.19  E-value=0.52  Score=49.80  Aligned_cols=109  Identities=23%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--  208 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--  208 (249)
                      ++|++ +|-...=.+...+--+|-- .++.-..-.+.+.+|.+++++. +.+..+---++|+|+-|+|..|+...-.+  
T Consensus       371 e~i~~-pdwr~reaavmAFGSIl~g-p~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l  447 (859)
T KOG1241|consen  371 ENIQN-PDWRNREAAVMAFGSILEG-PEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELL  447 (859)
T ss_pred             HhcCC-cchhhhhHHHHHHHhhhcC-CchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence            46776 3544444455555444422 1211112335688999999998 54555567899999999999998876666  


Q ss_pred             -ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         209 -DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       209 -GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                       .-|++|++-|.+  .+.|++-|-||+.+++.-.+++
T Consensus       448 ~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  448 QSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             hHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHh
Confidence             888999987764  6889999999999998655554

>KOG1048|consensus

Probab=91.99  E-value=0.42  Score=50.00  Aligned_cols=71  Identities=20%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      -=+|+.|+.|.. .++.+|-.||--|-+++=+-.+--..|=  |.||.||. |+.....+|--|+.|||.|+.=+
T Consensus       233 ~~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~-Ll~~~~~evq~~acgaLRNLvf~  305 (717)
T KOG1048|consen  233 PTLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA-LLDHRNDEVQRQACGALRNLVFG  305 (717)
T ss_pred             cccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH-HhcCCcHHHHHHHHHHHHhhhcc
Confidence            458899999974 5699999999999999988776655444  99999997 88889999999999999998744

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.76  E-value=0.85  Score=41.84  Aligned_cols=110  Identities=22%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC---CCccHHHHHHHHHHHHHhcCc
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD---HNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e---~n~dLQ~eAArALTNIasgtp  201 (249)
                      -+..++.-+.. +|...++.|..-|..+++..+...  ......+++.|+++|+..   ++.++|..|.+||-+++. .+
T Consensus       106 ~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~~~~~~--~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~  181 (312)
T PF03224_consen  106 PYSPFLKLLDR-NDSFIQLKAAFILTSLLSQGPKRS--EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SK  181 (312)
T ss_dssp             -HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT----HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SH
T ss_pred             hHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cc
Confidence            46677775666 599999999999999998854322  111247899999998863   346789999999999995 44


Q ss_pred             hhHHHHh--ccHHHHHHHh------hcCCChhHHHHHHHHHHHhh
Q psy1198         202 RSSAVVL--DAVPTFLEKL------QVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       202 ~qT~~VV--GAVPiL~~kL------Lsi~yiDVAEQALwALenIS  238 (249)
                      +.-..++  +.|+.|.+.|      -....+.+.-|++-||=.+|
T Consensus       182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS  226 (312)
T PF03224_consen  182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS  226 (312)
T ss_dssp             HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence            4444454  9999999855      23445666666655554444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4199|consensus

Probab=91.68  E-value=1.2  Score=43.78  Aligned_cols=117  Identities=13%  Similarity=0.147  Sum_probs=82.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-CCCCCCC-CCCccChHHHHHHhcCC-CCCccHHHHHHHHHHHHHhcCch
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVM-GNEDTLT-GFPVKQVVPALITLLSM-DHNFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSm-snep~I~-~fp~~glVP~LV~iLs~-e~n~dLQ~eAArALTNIasgtp~  202 (249)
                      +..++.-|.+. .+...-+...+++.+|+. ..+|... .+-..+..|.++.++.. .++|.+--+++-||+.|+=-.|+
T Consensus       285 l~tl~~~i~d~-n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd  363 (461)
T KOG4199|consen  285 LDTLLRCIDDS-NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD  363 (461)
T ss_pred             HHHHHHHHhhh-chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc
Confidence            45566566542 222222455666666665 3344433 35567889999987754 46899999999999999999999


Q ss_pred             hHHHHh--ccHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhchh
Q psy1198         203 SSAVVL--DAVPTFLEKLQVIQ-CMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       203 qT~~VV--GAVPiL~~kLLsi~-yiDVAEQALwALenISgD~p~  243 (249)
                      +...+|  |+-...++-+..-| .--|.-|+.|.+.||.-++..
T Consensus       364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~  407 (461)
T KOG4199|consen  364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE  407 (461)
T ss_pred             hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999  66556666566554 467889999999999876543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=91.39  E-value=1.1  Score=40.50  Aligned_cols=95  Identities=28%  Similarity=0.327  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..++.+++.+.+ .|+...+.+...+.+            +.....||.|.++|..+ ++.+...|+.+|-++-+  |  
T Consensus        43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~--~--  104 (335)
T COG1413          43 EAADELLKLLED-EDLLVRLSAAVALGE------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGELGD--P--  104 (335)
T ss_pred             hhHHHHHHHHcC-CCHHHHHHHHHHHhh------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC--h--
Confidence            356777777887 478888877776333            44457899999999854 57888888887666543  2  


Q ss_pred             HHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         204 SAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       204 T~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                           -++|.|+..|.+.+...|++-|.|+|++|--..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~  137 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER  137 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh
Confidence                 467889975554688999999999999976544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.01  E-value=3.9  Score=35.00  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch---hH--HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPR---SS--AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~---qT--~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .++..++.....+.||.+...++.+|++++...+.   ..  ...+ ..+|.++. +++-...+|++.|-.++..+..-.
T Consensus       130 ~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  130 KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHC
Confidence            45344444444567899999999999999999992   21  1123 57777774 777788999988777776665544


Q ss_pred             hh
Q psy1198         242 SK  243 (249)
Q Consensus       242 p~  243 (249)
                      |.
T Consensus       209 ~~  210 (228)
T PF12348_consen  209 PE  210 (228)
T ss_dssp             -H
T ss_pred             CH
Confidence            44

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1293|consensus

Probab=90.90  E-value=2.1  Score=44.64  Aligned_cols=113  Identities=18%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.||+-+.. ++...+-.+|-.+|++. |+--++=..|...++|..+.+.+...+ +.+---+-|+|.|++=..-+.-.
T Consensus       421 ~~plvqll~d-p~~~i~~~~lgai~NlV-mefs~~kskfl~~ngId~l~s~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k  497 (678)
T KOG1293|consen  421 AQPLVQLLMD-PEIMIMGITLGAICNLV-MEFSNLKSKFLRNNGIDILESMLTDPD-FNSRANSLWVLRHLMFNCDEEEK  497 (678)
T ss_pred             HHHHHHHhhC-cchhHHHHHHHHHHHHH-hhcccHHHHHHHcCcHHHHHHHhcCCC-chHHHHHHHHHHHHHhcchHHHH
Confidence            4556655533 45566667788898865 554455456999999999999998654 67777899999999865544332


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .--  ..-.-++..|.+-++..|.|||++-|.|+-=++
T Consensus       498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            222  222233334667799999999999999986553

>KOG0567|consensus

Probab=90.48  E-value=0.52  Score=44.51  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             HHHHHHhcCCCCCccHH-HHHHHHHHHH---------HhcCchh------HHHHh-------ccHHHHHHHhhcC-CChh
Q psy1198         170 VPALITLLSMDHNFDMM-NNACRALTYM---------MEALPRS------SAVVL-------DAVPTFLEKLQVI-QCMD  225 (249)
Q Consensus       170 VP~LV~iLs~e~n~dLQ-~eAArALTNI---------asgtp~q------T~~VV-------GAVPiL~~kLLsi-~yiD  225 (249)
                      |..|-..|..+..+.+. +.|-..|+|+         ++++...      ..+.|       -+||.|.+.|+.. +.+=
T Consensus       156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pM  235 (289)
T KOG0567|consen  156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPM  235 (289)
T ss_pred             HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchH
Confidence            66666666555545552 3445556665         3333322      22333       5799999888864 6788


Q ss_pred             HHHHHHHHHHHhhhhchhHHhhcC
Q psy1198         226 VAEQSLTALEMLSRRHSKAILQAF  249 (249)
Q Consensus       226 VAEQALwALenISgD~p~aIL~a~  249 (249)
                      |+-.|..||+-|+.+...++|+.|
T Consensus       236 VRhEaAeALGaIa~e~~~~vL~e~  259 (289)
T KOG0567|consen  236 VRHEAAEALGAIADEDCVEVLKEY  259 (289)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH
Confidence            999999999999999999998754

>KOG2171|consensus

Probab=90.43  E-value=1.3  Score=48.39  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=84.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--  208 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--  208 (249)
                      +.|+| .|......+|..|.-+---+.+-.+..+  +.++|..+..|+.+ +|.+++-||-||--|..-++.....--  
T Consensus       355 ~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e  430 (1075)
T KOG2171|consen  355 AMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHE  430 (1075)
T ss_pred             HHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence            44677 5888888888887654322211111123  46889999999865 599999999999999988887766555  


Q ss_pred             ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      -.+|.|+..|-+-..+.|.--|..||-|.+-++++.+|.
T Consensus       431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~  469 (1075)
T KOG2171|consen  431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE  469 (1075)
T ss_pred             hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            445578876666677889999999999999999999875

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=90.39  E-value=0.87  Score=35.98  Aligned_cols=60  Identities=23%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhhcC
Q psy1198         189 ACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQAF  249 (249)
Q Consensus       189 AArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~a~  249 (249)
                      +-++|..++-+++......+ -.||.++. .++-++..|+.-|.++|-||++....++|..|
T Consensus         6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~-~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f   66 (97)
T PF12755_consen    6 GLIGLAAVAIALGKDISKYLDEILPPVLK-CFDDQDSRVRYYACEALYNISKVARGEILPYF   66 (97)
T ss_pred             HHHHHHHHHHHchHhHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999998877777 88999985 77778999999999999999999999888654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=88.71  E-value=0.78  Score=38.97  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             CCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         160 TLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       160 ~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      ..+++-..-++..|+++|+...-...+-.+..++++|+.-....+.... -.||.|++.+.+.+. .+.|-.+|-|..|.
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADLV  156 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence            4445445678899999998766566666889999999965444443333 889999997776666 99999999998874

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0168|consensus

Probab=88.58  E-value=3.2  Score=44.75  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHH---HHHHhhcCCCCCCCCCCccChHHHHHHhcC-------------------CCC--
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVE---MCQMLVMGNEDTLTGFPVKQVVPALITLLS-------------------MDH--  181 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~e---LrelLSmsnep~I~~fp~~glVP~LV~iLs-------------------~e~--  181 (249)
                      ++-||.-|+.+...+.++.|++.   ||+.|-.+    +.-+-....||.|++-|.                   ++|  
T Consensus       213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S----~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  213 VPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS----SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHhhccch----hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            35556666665567888766554   45555433    222333467888775553                   222  


Q ss_pred             ------------------CccHHHHHHHHHHHHHhcCc-hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         182 ------------------NFDMMNNACRALTYMMEALP-RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       182 ------------------n~dLQ~eAArALTNIasgtp-~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                                        ....|..|--.-.|+|.-++ +.-+.|+.+||.|+. |++-++..+-|-+.-||-+|+-
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~-lLs~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTP-LLSYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH-HHhhccchhHHHHHHHHHHHHH
Confidence                              24668888888899997665 445666699999997 6665777788888888877763

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.82  E-value=3  Score=39.01  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhcCCC-CCCCCCCc----cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh---ccH
Q psy1198         140 DQQLQAVVEMCQMLVMGNE-DTLTGFPV----KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL---DAV  211 (249)
Q Consensus       140 ~~QLeAL~eLrelLSmsne-p~I~~fp~----~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV---GAV  211 (249)
                      +.|=-+|..|||+--.++| |.|-..|.    +.|+..|+++|....++-+-..|.-.|.|++-+-+..+..+.   ++|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            3466689999998777554 22223332    367778888888888888888999999999998888887766   889


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHH
Q psy1198         212 PTFLEKLQVIQCMDVAEQSLTALEM  236 (249)
Q Consensus       212 PiL~~kLLsi~yiDVAEQALwALen  236 (249)
                      ..|+.      |||-+||.....-+
T Consensus       219 ~~Li~------FiE~a~~~~~~~~~  237 (257)
T PF12031_consen  219 SHLIA------FIEDAEQNAHQVAS  237 (257)
T ss_pred             HHHHH------HHHHHHHHHHHHHh
Confidence            98886      77778877665544

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=87.48  E-value=1.7  Score=33.09  Aligned_cols=60  Identities=15%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh-chhHHhh
Q psy1198         187 NNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR-HSKAILQ  247 (249)
Q Consensus       187 ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD-~p~aIL~  247 (249)
                      .-|-||+-||.+ ++.-...+.  +.||.+++.-.+.+...|+=-|..+|+.||+- ...++|+
T Consensus         5 KaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~   67 (73)
T PF14668_consen    5 KAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILD   67 (73)
T ss_pred             HHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence            357899999988 333333333  89999998666789999999999999999974 3444554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=86.90  E-value=10  Score=32.05  Aligned_cols=84  Identities=18%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcc-ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc-Cchh
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVK-QVVPALITLLSMDHNFDMMNNACRALTYMMEA-LPRS  203 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~-glVP~LV~iLs~e~n~dLQ~eAArALTNIasg-tp~q  203 (249)
                      ++.|...|++ +|+.....|+.-|.++++..   .   +... .++..++.+|. |++++++-.|..++..+..- .|.-
T Consensus        27 ~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d---~---ik~k~~l~~~~l~~l~-D~~~~Ir~~A~~~~~e~~~~~~~~~   98 (178)
T PF12717_consen   27 LPNLYKCLRD-EDPLVRKTALLVLSHLILED---M---IKVKGQLFSRILKLLV-DENPEIRSLARSFFSELLKKRNPNI   98 (178)
T ss_pred             HHHHHHHHCC-CCHHHHHHHHHHHHHHHHcC---c---eeehhhhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHhccchH
Confidence            4566677888 69999999999999998652   2   2233 44588888885 56899999999999999986 3432


Q ss_pred             HHHHhccHHHHHHHhhc
Q psy1198         204 SAVVLDAVPTFLEKLQV  220 (249)
Q Consensus       204 T~~VVGAVPiL~~kLLs  220 (249)
                         +...+|-++..|..
T Consensus        99 ---i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   99 ---IYNNFPELISSLNN  112 (178)
T ss_pred             ---HHHHHHHHHHHHhC
Confidence               33555555555554

>KOG1820|consensus

Probab=86.76  E-value=6.7  Score=41.93  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-cc
Q psy1198         132 SLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DA  210 (249)
Q Consensus       132 ~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GA  210 (249)
                      .+-+ .|-....+||.++-+.|+-.+  ....-+..+++-.++++...|-|..+-..|+-||+-|+..++.-..-.+ ..
T Consensus       261 ~~~s-~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v  337 (815)
T KOG1820|consen  261 EMLS-KKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV  337 (815)
T ss_pred             hhhc-cchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence            4555 478888999999999987654  1112344689999999999999999999999999999999999987777 99


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       211 VPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .|.|.++|-+. +-.|.|-.+.|+..|..-.
T Consensus       338 ~p~lld~lkek-k~~l~d~l~~~~d~~~ns~  367 (815)
T KOG1820|consen  338 FPSLLDRLKEK-KSELRDALLKALDAILNST  367 (815)
T ss_pred             cchHHHHhhhc-cHHHHHHHHHHHHHHHhcc
Confidence            99999999884 6678888888888776633

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=85.89  E-value=3.3  Score=33.45  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcC--CChhHHHHHHHHHHHhhhhchhH
Q psy1198         187 NNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVI--QCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       187 ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi--~yiDVAEQALwALenISgD~p~a  244 (249)
                      ....|.|.|++--.+..-..|.  +.||.+++ ...+  .++=+.|.|+||+-|+-..++..
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~-~c~iD~~nP~irEwai~aiRnL~e~n~eN   64 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILS-CCNIDDHNPFIREWAIFAIRNLCEGNPEN   64 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH-hcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence            3567899999999988877777  88999987 4444  35779999999999998877753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=85.27  E-value=7.3  Score=40.98  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             hhhHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCC-----------------
Q psy1198         120 EDTATKAQQ--LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMD-----------------  180 (249)
Q Consensus       120 s~~~~rl~~--Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e-----------------  180 (249)
                      +..-+++..  ++-.++-. |...|+.-++.++.-++|.|...  .+   -+|...+++|..+                 
T Consensus       202 ~~~isqYHalGlLyq~kr~-dkma~lklv~hf~~n~smknq~a--~V---~lvr~~~~ll~~n~q~~~q~rpfL~~wls~  275 (898)
T COG5240         202 GNPISQYHALGLLYQSKRT-DKMAQLKLVEHFRGNASMKNQLA--GV---LLVRATVELLKENSQALLQLRPFLNSWLSD  275 (898)
T ss_pred             CChHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhcccccccchh--he---ehHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence            333344433  46677774 88899999999999999977533  11   1333444444321                 


Q ss_pred             CCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         181 HNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       181 ~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      .-..+++|+||+++-+++-+  -..-.+ .+|..|.. +|.++..-++=-|+.+|-.||...|..|
T Consensus       276 k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~-fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         276 KFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRT-FLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             cchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            12467999999999987755  122233 66777764 7788888888889999999999888754

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.06  E-value=12  Score=31.36  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      +.+.++|+...+......-.....++|+++.....      .....+..|.+=|+. .||.+|+.|-..|--++.-....
T Consensus         3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~------~~k~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~   75 (142)
T cd03569           3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDV------QPKYAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTH   75 (142)
T ss_pred             chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHH
Confidence            34777887776644445557778899999965321      235677788877765 57999999977777776655555


Q ss_pred             HHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         204 SAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       204 T~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .+..|   .-+..|+..+......+|.+.++..+..-+...
T Consensus        76 fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          76 FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            55545   556666643333567889999999888866544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.02  E-value=7.6  Score=31.87  Aligned_cols=110  Identities=14%  Similarity=0.108  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..+.++|+...+..-+..-.....++|+++....      ......+..|.+-|++ .+|.+|+.|-..|-.++.-....
T Consensus         4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~   76 (140)
T PF00790_consen    4 SSITELIEKATSESLPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPR   76 (140)
T ss_dssp             SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHH
T ss_pred             ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence            4577888877653334445667788999987751      1235677888888876 67999999988888888877666


Q ss_pred             HHHHh---ccHHHHHHHhhc-CCChh---HHHHHHHHHHHhhhhc
Q psy1198         204 SAVVL---DAVPTFLEKLQV-IQCMD---VAEQSLTALEMLSRRH  241 (249)
Q Consensus       204 T~~VV---GAVPiL~~kLLs-i~yiD---VAEQALwALenISgD~  241 (249)
                      .+.-|   .-+-.|+. |.. .....   |.|+++..|..-+...
T Consensus        77 f~~ev~~~~fl~~l~~-l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   77 FHREVASKEFLDELVK-LIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHTSHHHHHHHHH-HHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHH-HHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            55555   44445553 443 33333   8999997776655444

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>TIGR02270 conserved hypothetical protein

Probab=85.00  E-value=8.9  Score=37.55  Aligned_cols=61  Identities=21%  Similarity=0.034  Sum_probs=44.1

Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .+.++.+|+ +.++.+.-+|+|+|-.|-+.         .++|.|.. .+..++.+|++-++++|..+-.+.
T Consensus       149 ~~~L~~~L~-d~d~~Vra~A~raLG~l~~~---------~a~~~L~~-al~d~~~~VR~aA~~al~~lG~~~  209 (410)
T TIGR02270       149 GPALEAALT-HEDALVRAAALRALGELPRR---------LSESTLRL-YLRDSDPEVRFAALEAGLLAGSRL  209 (410)
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHhhccc---------cchHHHHH-HHcCCCHHHHHHHHHHHHHcCCHh
Confidence            466777776 44577777788877766531         56777774 677789999999999998874433

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2032|consensus

Probab=84.69  E-value=7.5  Score=39.65  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC---CCCccHHHHHHHHHHHHHh
Q psy1198         124 TKAQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM---DHNFDMMNNACRALTYMME  198 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~---e~n~dLQ~eAArALTNIas  198 (249)
                      .++.+|+..+-+..  ....++.....++--+..  ++-   ++..+++..++..|.+   +.+-.+--.|||+|-|+++
T Consensus       213 ~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~--~~~---l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as  287 (533)
T KOG2032|consen  213 LEMGKILAQLLSSITSEKENGRITDIAFFAELKR--PKE---LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTAS  287 (533)
T ss_pred             ccHHHHHhhcccccchhcccchHHHHHHHHHHhC--ccc---ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Confidence            34556665543321  112234343444333333  333   3345666666666643   3345778899999999999


Q ss_pred             cCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         199 ALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       199 gtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      +.|.....-+ -.|-.++.-|.+-.+.||.=|++.+|-++..
T Consensus       288 ~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~  329 (533)
T KOG2032|consen  288 GAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE  329 (533)
T ss_pred             cCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            9998765544 3333333334455568999999999887654

>KOG1293|consensus

Probab=84.41  E-value=8.2  Score=40.43  Aligned_cols=110  Identities=21%  Similarity=0.232  Sum_probs=83.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCchhHHH
Q psy1198         128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPRSSAV  206 (249)
Q Consensus       128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~qT~~  206 (249)
                      .++..+.. -||...+.+...++.++ .++.++-..++..|-||.|..+++.++ .++++.+.+-.|-..+.+.-.-...
T Consensus        13 ~~l~~L~~-~dpe~lvrai~~~kN~v-ig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~s   90 (678)
T KOG1293|consen   13 DLLYRLLH-LDPEQLVRAIYMSKNLV-IGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDS   90 (678)
T ss_pred             HHHHhhhc-CCHHHHHHHHHHhcchh-hcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence            34455666 37777788888887665 455666666888899999999998664 6788877766777778877777777


Q ss_pred             Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         207 VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       207 VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      |+  .-+|.|.+.|.+.++..+.|-++.+|-+|=.
T Consensus        91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ife  125 (678)
T KOG1293|consen   91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFE  125 (678)
T ss_pred             HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHh
Confidence            77  8899999755554448899999999988743

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=84.21  E-value=4.3  Score=40.21  Aligned_cols=106  Identities=18%  Similarity=0.193  Sum_probs=68.9

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCchhHHHHh-
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPRSSAVVL-  208 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~qT~~VV-  208 (249)
                      ..+++.++...+..+++.|..+|....  .=..|-....|+.|+++|+... +.++|++++=||-=+ +=.++...... 
T Consensus       150 ~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~~~  226 (429)
T cd00256         150 EQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPHAAEVLKR  226 (429)
T ss_pred             HHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHHHHHhhcc
Confidence            344442345556677777777775521  1112434457999999998755 678988876444322 11222223333 


Q ss_pred             -ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         209 -DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       209 -GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                       +.||.|++-+..+.-..|--=|+-+|-|+..
T Consensus       227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence             8999999977788878888888999999876

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>TIGR02270 conserved hypothetical protein

Probab=84.01  E-value=11  Score=37.02  Aligned_cols=69  Identities=25%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      +.....++.|+..|+.+ +|.++..+..+|.+.-          ....+.+.. +++.++..|.++++.+|+.|-.....
T Consensus       113 i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~----------~~~~~~L~~-~L~d~d~~Vra~A~raLG~l~~~~a~  180 (410)
T TIGR02270       113 LGGRQAEPWLEPLLAAS-EPPGRAIGLAALGAHR----------HDPGPALEA-ALTHEDALVRAAALRALGELPRRLSE  180 (410)
T ss_pred             CCchHHHHHHHHHhcCC-ChHHHHHHHHHHHhhc----------cChHHHHHH-HhcCCCHHHHHHHHHHHHhhccccch
Confidence            44456777777777643 4666666555554411          145667775 66667888999999999988655443


Q ss_pred             H
Q psy1198         244 A  244 (249)
Q Consensus       244 a  244 (249)
                      .
T Consensus       181 ~  181 (410)
T TIGR02270       181 S  181 (410)
T ss_pred             H
Confidence            3

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=83.95  E-value=5.2  Score=36.57  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-------ccChHHHHHHhcCCCCCccHHHHHHHHHHHH
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-------VKQVVPALITLLSMDHNFDMMNNACRALTYM  196 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-------~~glVP~LV~iLs~e~n~dLQ~eAArALTNI  196 (249)
                      ..+.-++..++. +++..+..|++-+.++|..-.-+.++...       ...++..|.++|..+ ++++|..||-.|.-+
T Consensus        64 ~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL  141 (298)
T PF12719_consen   64 EHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL  141 (298)
T ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            345556777766 58999999999999999886555555433       257888999999876 799999999998885


Q ss_pred             H
Q psy1198         197 M  197 (249)
Q Consensus       197 a  197 (249)
                      +
T Consensus       142 l  142 (298)
T PF12719_consen  142 L  142 (298)
T ss_pred             H
Confidence            4

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=83.08  E-value=9  Score=34.70  Aligned_cols=77  Identities=27%  Similarity=0.311  Sum_probs=55.3

Q ss_pred             CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-----------------------ch--hH-HHHh--------c
Q psy1198         164 FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-----------------------PR--SS-AVVL--------D  209 (249)
Q Consensus       164 fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-----------------------p~--qT-~~VV--------G  209 (249)
                      +.....+|.|+++|+.+++..+...|+|+|..+-+-.                       +.  +- .++.        -
T Consensus       101 ~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~  180 (335)
T COG1413         101 LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE  180 (335)
T ss_pred             cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh
Confidence            4456789999999998778888889999988776644                       10  11 1111        5


Q ss_pred             cHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         210 AVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       210 AVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ++|.+.+ ++..+..+|...+..+|+.|..+.
T Consensus       181 ~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         181 AIPLLIE-LLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhHHHHH-HHhCchHHHHHHHHHHHHHhhcch
Confidence            6777776 666677789999999998887763

>KOG1824|consensus

Probab=82.56  E-value=4  Score=44.65  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=63.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198         128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV  207 (249)
Q Consensus       128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V  207 (249)
                      .|++.+.+ .|-+-.+.|+..|-.-|-.. --.|+.=....+|..++++|+ +.|+++|.+|.+||--|.+-.++.-  +
T Consensus         9 ~Llekmts-sDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsKvke~~--l   83 (1233)
T KOG1824|consen    9 NLLEKMTS-SDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSKVKEDQ--L   83 (1233)
T ss_pred             HHHHHccC-CCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhhchHHH--H
Confidence            67888888 48888999999988777664 223333223478999999997 4689999999999998887776542  2


Q ss_pred             hccHHHHHHHhh
Q psy1198         208 LDAVPTFLEKLQ  219 (249)
Q Consensus       208 VGAVPiL~~kLL  219 (249)
                      .-.|..||.+++
T Consensus        84 e~~ve~L~~~~~   95 (1233)
T KOG1824|consen   84 ETIVENLCSNML   95 (1233)
T ss_pred             HHHHHHHhhhhc
Confidence            244555665544

>PF05536 Neurochondrin: Neurochondrin

Probab=81.59  E-value=12  Score=37.95  Aligned_cols=114  Identities=16%  Similarity=0.253  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC------CCCccChHHHHHHhcCCCC--CccH-HHHHHHHH
Q psy1198         123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT------GFPVKQVVPALITLLSMDH--NFDM-MNNACRAL  193 (249)
Q Consensus       123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~------~fp~~glVP~LV~iLs~e~--n~dL-Q~eAArAL  193 (249)
                      ...+++.+.-|++. |...+|.+|--+-|++.-..++...      .+. -.|+.+|.+--..+.  +++. +-.|--.|
T Consensus         4 ~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    4 SASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVL   81 (543)
T ss_pred             hHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            45788899899985 6777899998888888643322211      122 245555554433322  3333 44455555


Q ss_pred             HHHHhcCchhH--HHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         194 TYMMEALPRSS--AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       194 TNIasgtp~qT--~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      .-.+. .|+-.  ..+++-||.|++-+.+.+...+.+.|+++|-.|+.
T Consensus        82 ~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias  128 (543)
T PF05536_consen   82 AAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS  128 (543)
T ss_pred             HHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc
Confidence            55554 55543  55669999999866666555899999999999983

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=81.07  E-value=9.9  Score=39.01  Aligned_cols=109  Identities=15%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC--ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP--VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp--~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp  201 (249)
                      ..++.|++..+. ++...+| |-+-+.+....        ||  .+..+-+++.+... ++.++...|.+.|-.+|-.+|
T Consensus        23 ~~y~~il~~~kg-~~k~K~L-aaq~I~kffk~--------FP~l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~   91 (556)
T PF05918_consen   23 EDYKEILDGVKG-SPKEKRL-AAQFIPKFFKH--------FPDLQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDNP   91 (556)
T ss_dssp             HHHHHHHHGGGS--HHHHHH-HHHHHHHHHCC---------GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--
T ss_pred             HHHHHHHHHccC-CHHHHHH-HHHHHHHHHhh--------ChhhHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHH
Confidence            355666666654 2333333 33444444322        33  22445555555543 346666666666666666666


Q ss_pred             hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      +.+..|+   -+|++ ||.++...-.+.+=++|=.|-.-.|+..|.
T Consensus        92 ~~v~kva---DvL~Q-lL~tdd~~E~~~v~~sL~~ll~~d~k~tL~  133 (556)
T PF05918_consen   92 EHVSKVA---DVLVQ-LLQTDDPVELDAVKNSLMSLLKQDPKGTLT  133 (556)
T ss_dssp             T-HHHHH---HHHHH-HTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHhHHH---HHHHH-HHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            6655443   35565 455555445555555555555555555443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.82  E-value=8.4  Score=34.23  Aligned_cols=118  Identities=13%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++-.+++|+..++| -.+.|.+.+.++|.....+-|- -+|  .+|+.|-+-|+. .++++.-.+-.||-.|+-..+.--
T Consensus        40 Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlP--qLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   40 LPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLP--QLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             HHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhh
Confidence            46668899986444 4577899999999873233221 222  455566666653 468998889999999866555444


Q ss_pred             HHHh----ccHHHHH----HHh---------hcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         205 AVVL----DAVPTFL----EKL---------QVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       205 ~~VV----GAVPiL~----~kL---------Lsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      .+.|    --.|+|-    .+.         ..-..-|+-+..|+.||.--|+..-.++|
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIK  175 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIK  175 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHH
Confidence            5555    4455554    110         01112355556666666655554444433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=80.18  E-value=4  Score=40.40  Aligned_cols=70  Identities=21%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      .++..|+++|+..++|...-.||-=|..++.-.|+--..+-  |+=...- +|++.++.+|+.+||.|+.+|=
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM-~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVM-RLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence            67899999997777788888899999999999987666554  7655555 5889999999999999999873

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=80.16  E-value=20  Score=37.86  Aligned_cols=82  Identities=15%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhcc
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDA  210 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGA  210 (249)
                      ..|.+ .+|+..=.|...+.|+....  |.  .++..+|++.|.++|. +.+|.++..|..+|+.|.+-.|.........
T Consensus       147 k~L~D-~~pYVRKtAalai~Kly~~~--pe--lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~  220 (746)
T PTZ00429        147 RAVAD-PDPYVRKTAAMGLGKLFHDD--MQ--LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKIESSNEW  220 (746)
T ss_pred             HHhcC-CCHHHHHHHHHHHHHHHhhC--cc--cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            34555 57887777788888877653  22  2566789999999886 5689999999999999988766433222255


Q ss_pred             HHHHHHHh
Q psy1198         211 VPTFLEKL  218 (249)
Q Consensus       211 VPiL~~kL  218 (249)
                      +..||+.|
T Consensus       221 ~~~Ll~~L  228 (746)
T PTZ00429        221 VNRLVYHL  228 (746)
T ss_pred             HHHHHHHh
Confidence            55666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.81
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.74
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.6
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.54
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.53
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.52
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.44
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.39
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.3
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.3
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.3
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.19
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.07
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.02
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.01
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.91
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.86
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.83
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.8
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.63
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.53
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.45
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.04
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.03
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.98
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.97
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.95
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.89
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.86
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.81
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.62
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.58
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.57
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.53
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.52
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.52
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.45
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.31
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.24
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.21
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.12
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.03
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.01
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.98
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.91
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.89
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.85
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.57
3grl_A	651	General vesicular transport factor P115; vesicle t	96.55
3grl_A	651	General vesicular transport factor P115; vesicle t	96.33
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.24
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.79
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	95.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	95.0
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.94
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	94.93
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	94.87
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	94.4
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	91.44
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	90.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.18
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.95
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	89.36
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.25
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.13
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	87.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	87.37
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	86.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	85.52
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	84.98
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	84.97
2x19_B	963	Importin-13; nuclear transport, protein transport;	83.93
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	83.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	82.38
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	81.12
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	80.67
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	80.13

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=8.4e-28  Score=225.09  Aligned_cols=148  Identities=14%  Similarity=0.213  Sum_probs=124.3

Q ss_pred             cchhHHHHhhCCCC--CCCCCCccC---ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccC
Q psy1198          94 TSLLSGVASSSSGP--SHAPGAALD---SESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQ  168 (249)
Q Consensus        94 ~~r~q~Llkrr~l~--~~~~gs~~~---~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~g  168 (249)
                      .||+|.|.|||+++  ++...+.+.   .........+++|++.|+| +|+..|++|++.+|++||.+++|||+.++..|
T Consensus        41 ~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G  119 (529)
T 3tpo_A           41 AKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAG  119 (529)
T ss_dssp             ---CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTT
T ss_pred             HHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCC
Confidence            48999999999975  222222221   1122334568999999999 69999999999999999999999999988999


Q ss_pred             hHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         169 VVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       169 lVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      +||.||++|+.++++++|++|||||+||++++++++..||  |+||.|++ |+.+++.+|.|||+|||+||+.|++.
T Consensus       120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhccCHH
Confidence            9999999999888999999999999999999999999999  99999996 88999999999999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=2.1e-27  Score=222.36  Aligned_cols=147  Identities=16%  Similarity=0.231  Sum_probs=114.5

Q ss_pred             chhHHHHhhCCCCCCCCCCc--------cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q psy1198          95 SLLSGVASSSSGPSHAPGAA--------LDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPV  166 (249)
Q Consensus        95 ~r~q~Llkrr~l~~~~~gs~--------~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~  166 (249)
                      .+.+.+.|+|+++.--.+..        ........+..+++||++|+| +|+..|++|++.+||+||.+++|||+.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~   98 (510)
T 3ul1_B           20 ETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIR   98 (510)
T ss_dssp             ---------------------------------CCSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred             HHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            34556666666542111211        112233445569999999999 599999999999999999999999999989


Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      .|+||+||++|++++++++|++|||||+||++++++++..||  |+||.|++ |+.+++.+|.|||+|||+||+.|++.
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~-lL~s~~~~v~e~A~~aL~nLa~d~~~  176 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA  176 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            999999999999888999999999999999999999999999  99999996 78889999999999999999998875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.81  E-value=6.8e-20  Score=168.58  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             cchhHHHHhhCCCCC--CCC-CCccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChH
Q psy1198          94 TSLLSGVASSSSGPS--HAP-GAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVV  170 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~--~~~-gs~~~~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glV  170 (249)
                      .||+|+|+|||++..  ..+ ..............++.|++.|++ +|+..|+.|+..|+++++...++++..+...++|
T Consensus        41 ~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v  119 (528)
T 4b8j_A           41 SRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV  119 (528)
T ss_dssp             --------CCCC----------------------CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCH
Confidence            599999999999731  111 100000111233558999999998 5999999999999999999877888777788999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         171 PALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       171 P~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      |.|+++|+.++++++|++|+|||+||++..++....++  |+||.|++ |+..++.+|.|+|+|+|.||+.+.+.
T Consensus       120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~  193 (528)
T 4b8j_A          120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLGSSSDDVREQAVWALGNVAGDSPK  193 (528)
T ss_dssp             HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCChh
Confidence            99999999877799999999999999999999999888  99999997 77778999999999999999998764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.74  E-value=2e-18  Score=159.68  Aligned_cols=147  Identities=21%  Similarity=0.252  Sum_probs=117.6

Q ss_pred             cchhHHHHhhCCCCCC----CCCCccC----ccch---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC
Q psy1198          94 TSLLSGVASSSSGPSH----APGAALD----SESE---DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT  162 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~~----~~gs~~~----~~~s---~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~  162 (249)
                      .||++.|+|||++++.    .......    ....   .....++.|++.|++ +|+..|+.|+..|+++++..+++++.
T Consensus        46 ~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~  124 (530)
T 1wa5_B           46 AKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPID  124 (530)
T ss_dssp             CCCCSCCSCCCCC----------------------------CCHHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHH
T ss_pred             HHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHH
Confidence            5999999999998531    0000000    0000   123457899999998 59999999999999999987777776


Q ss_pred             CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         163 GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       163 ~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      .+...++||.|+++|+.++++++|++|+|+|+||++..++....++  |+||.|++ |+..++.+|.|+|+|+|.||+.+
T Consensus       125 ~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~vr~~A~~aL~~l~~~  203 (530)
T 1wa5_B          125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGD  203 (530)
T ss_dssp             HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HHHHCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCC
Confidence            6667899999999999876899999999999999999999998888  99999997 66678999999999999999987


Q ss_pred             ch
Q psy1198         241 HS  242 (249)
Q Consensus       241 ~p  242 (249)
                      .+
T Consensus       204 ~~  205 (530)
T 1wa5_B          204 ST  205 (530)
T ss_dssp             CH
T ss_pred             Cc
Confidence            65

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.60  E-value=3.1e-15  Score=132.18  Aligned_cols=115  Identities=21%  Similarity=0.287  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcc-ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVK-QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~-glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++.+++.|++ +|+..+..|+..|+++++...++++..+... +++|.|+++|+.++++++|+.|+|+|+||++..++.+
T Consensus        22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            6788999998 5999999999999999998777776655555 9999999999987789999999999999999999999


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      ..++  |+||.|++ |+..++.+|+|+|+|+|.||+.+.+
T Consensus       101 ~~~~~~~~i~~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~  139 (450)
T 2jdq_A          101 RIVIQAGAVPIFIE-LLSSEFEDVQEQAVWALGNIAGDST  139 (450)
T ss_dssp             HHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHccCCH
Confidence            8888  99999997 7777899999999999999999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.54  E-value=2.6e-15  Score=142.78  Aligned_cols=110  Identities=22%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccChHHHHHHhcCCCCC-----------ccHHHHHH
Q psy1198         123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQVVPALITLLSMDHN-----------FDMMNNAC  190 (249)
Q Consensus       123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~glVP~LV~iLs~e~n-----------~dLQ~eAA  190 (249)
                      .+.+..|+..|.+. |+.      ..+|++|+++.++++ ..+...|.||.||+||+.+++           +++||+|+
T Consensus        31 ~~~~~~l~~~~~~~-~~~------~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           31 VEMVYSLLSMLGTH-DKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ---------------CCH------HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CHH------HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            34567788888874 665      278999999999997 457788999999999997654           79999999


Q ss_pred             HHHHHHHhcCchhHHHHh--ccH----------HHHHHHhhcCC--Chh-----HHH-------HHHHHHHHhhhh
Q psy1198         191 RALTYMMEALPRSSAVVL--DAV----------PTFLEKLQVIQ--CMD-----VAE-------QSLTALEMLSRR  240 (249)
Q Consensus       191 rALTNIasgtp~qT~~VV--GAV----------PiL~~kLLsi~--yiD-----VAE-------QALwALenISgD  240 (249)
                      ||||||+++.|+++.+++  +++          |.|++ |++..  ..|     |.|       ||+|+|.|||.|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~  178 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE-WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD  178 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHH-HHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence            999999999999999887  888          77775 66555  356     788       999999999977

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.53  E-value=7.3e-15  Score=121.45  Aligned_cols=118  Identities=20%  Similarity=0.287  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198         123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~  202 (249)
                      ...++.++..|++ +|+..|..|+..|+++++. ++++...+...++||.|+++|+.++ ++++..|+|+|.||+...++
T Consensus        11 ~~~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           11 GSELPQMTQQLNS-DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             TCSHHHHHHHHHS-SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred             cchHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHH
Confidence            3568999999999 5999999999999999998 4555555767899999999998764 99999999999999999999


Q ss_pred             hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         203 SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       203 qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ....++  |+||.|++ |+..++.++.++|+|+|.||+.+.+..
T Consensus        88 ~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~  130 (252)
T 4db8_A           88 QIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQ  130 (252)
T ss_dssp             HHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence            988888  99999997 777789999999999999999887654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.52  E-value=2.2e-14  Score=133.05  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      .++.+|..|++ +|+..|..|+..|+++. . +++++. .+...|.||.||++|+. +++++|+.|+|||+||+..+++.
T Consensus         3 ~l~~lv~~L~s-~~~~~q~~A~~~L~~l~-~-~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~   78 (457)
T 1xm9_A            3 TIPKAVQYLSS-QDEKYQAIGAYYIQHTC-F-QDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             CHHHHHHHHHS-SCTHHHHHHHHHHHHHT-S-SCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             CHHHHHHHHCC-CCHHHHHHHHHHHHHHH-c-CChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence            47889999999 59999999999999965 3 344444 46678999999999985 57999999999999999998999


Q ss_pred             HHHHh--ccHHHHHHHhhc-CCChhHHHHHHHHHHHhhhh
Q psy1198         204 SAVVL--DAVPTFLEKLQV-IQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLs-i~yiDVAEQALwALenISgD  240 (249)
                      ...|+  |+||.|++ |+. .++.++.|+++|+|.|||.+
T Consensus        79 k~~i~~~G~i~~Lv~-lL~~~~~~~~~~~a~~aL~nLa~~  117 (457)
T 1xm9_A           79 KLETRRQNGIREAVS-LLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             HHHHHHTTCHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHH-HHhhCCCHHHHHHHHHHHHHHhcC
Confidence            99888  99999997 555 78899999999999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=122.82  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198         124 TKAQQLLVSLQAIGDE--DQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~--~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp  201 (249)
                      ..++.+|+.|++ +|+  ..|..|...++. |+..++++...+...|.||.||++|+. +++++|++|||+|.||+...+
T Consensus         8 ~~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            8 MTLERAVSMLEA-DHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCHHHHHHTCCS-SCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHhCC-CCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence            468999999998 476  778888877754 555444454456677999999999987 469999999999999999999


Q ss_pred             hhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         202 RSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       202 ~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ++...|+  |+||.|++.|.+..+.++.|++..+|-|+|...
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~  126 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND  126 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence            9999888  999999974434678999999999999998754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.39  E-value=8.2e-13  Score=106.60  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=95.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++.-|++ +|+..+..|+..|+.+-.. +++....+...++||.|+++|+.+ +++++..|+|+|.||+...++...
T Consensus        14 ~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           14 LPQMVQQLNS-PDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             HHHHHHHTTC-SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence            4566666787 5999999999999887533 333334466679999999999865 699999999999999999999888


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      .++  |+||.|++ |+..++.++.+.|+|+|.||+.+.+..
T Consensus        91 ~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~  130 (210)
T 4db6_A           91 AVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQ  130 (210)
T ss_dssp             HHHHTTCHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHCCCHHHHHH-HHcCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            888  99999997 777789999999999999999766543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.30  E-value=5.4e-12  Score=102.67  Aligned_cols=115  Identities=16%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .++.+++.|++ +|+..+..|+..|+++..... +....+...++||.|+++|+.+ +++++..|+|+|.||+...++..
T Consensus         3 ~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            3 DVEKLVKLLTS-TDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHH
Confidence            47889999998 589999999999999886632 2333455679999999999875 59999999999999999888888


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..++  |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus        80 ~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~  119 (252)
T 4hxt_A           80 KAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPDE  119 (252)
T ss_dssp             HHHHHTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            8777  99999997 77778999999999999999975554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.30  E-value=4.4e-12  Score=113.88  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|+.-|+++.++..+-.|+-.|+.+. ..+++....|...+.+|.|+++|+.. ++++|..|||+|.||+++.+++..
T Consensus       126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~-~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~  203 (296)
T 1xqr_A          126 LRKLLRLLDRDACDTVRVKALFAISCLV-REQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKG  203 (296)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHH-cCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHH
Confidence            4666767775336667777777777654 23333334466679999999999864 699999999999999999999999


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      .|+  |+||.|++ |+..++.+|.|+++++|+||..+++..+
T Consensus       204 ~vv~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          204 TLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence            998  99999997 8888999999999999999999977543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.30  E-value=6e-12  Score=101.51  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=94.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|++-|++ +|+..+..++.-|+++... +++....+...+.||.|+++|+.+ +++++..|+|+|.||+...++...
T Consensus        56 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~  132 (210)
T 4db6_A           56 LPALVQLLSS-PNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ  132 (210)
T ss_dssp             HHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5777888888 5899999999999887533 222222344578999999999865 699999999999999999998888


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      .++  |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus       133 ~~~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~  171 (210)
T 4db6_A          133 AVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNE  171 (210)
T ss_dssp             HHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence            888  99999997 77778999999999999999987554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.23  E-value=9.5e-12  Score=115.37  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      .-++.||+-|++ +++..|..|+..|+++.+. ++++-..+...|.||.||++|+...++++|.+|+|||.||+.. ++.
T Consensus        44 g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~  120 (457)
T 1xm9_A           44 GGICKLVDLLRS-PNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DEL  120 (457)
T ss_dssp             THHHHHHHHTTS-SCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SST
T ss_pred             CCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHh
Confidence            347889999998 6999999999999998863 2232223556799999999998666799999999999999998 655


Q ss_pred             HHHHh-ccHHHHHHHhh-------cCC--------ChhHHHHHHHHHHHhhhh
Q psy1198         204 SAVVL-DAVPTFLEKLQ-------VIQ--------CMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       204 T~~VV-GAVPiL~~kLL-------si~--------yiDVAEQALwALenISgD  240 (249)
                      ...|+ |+||.|++.|.       ..+        ..+|.++|+|+|.||+.+
T Consensus       121 ~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~  173 (457)
T 1xm9_A          121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence            55566 99999997442       223        455666999999999987

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.23  E-value=1.3e-11  Score=110.83  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHH-hcCCCCCccHHHH
Q psy1198         121 DTATKAQQLLVSLQAI-----------GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALIT-LLSMDHNFDMMNN  188 (249)
Q Consensus       121 ~~~~rl~~Ll~~L~S~-----------~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~-iLs~e~n~dLQ~e  188 (249)
                      ....+++++++.|++.           .+......|+..|.+++-.  .++-..|...|.+|.||. +|+. .+++++..
T Consensus        25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~  101 (296)
T 1xqr_A           25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWR  101 (296)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHH
Confidence            4567889999999872           1124566788888777643  122223556689999999 9986 46999999


Q ss_pred             HHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         189 ACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       189 AArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      |||||.||+...|++...|+  |+||.|++.|.+.+...+.+.|+|||.||++.++.
T Consensus       102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~  158 (296)
T 1xqr_A          102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA  158 (296)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999888  99999997444345789999999999999987654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.19  E-value=2e-11  Score=119.89  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc-Cchh
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA-LPRS  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg-tp~q  203 (249)
                      .++.+|+.|++ +|+..|.+|...|+.+- ..++++-..+...|.||.||++|+.+ ++++|+.|+|||.||+.. .++.
T Consensus        49 ~i~~LV~~L~s-~~~~~q~~Aa~~L~~La-~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           49 ELPEVIAMLGF-RLDAVKSNAAAYLQHLC-YRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CHHHHHHHTTC-SCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cHHHHHHHHCC-CCHHHHHHHHHHHHHHH-cCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHH
Confidence            58999999998 59999999998886654 43444444466679999999999864 699999999999999997 5778


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      ...|+  |+||.|++.|.+.++.++.|++.|||-|+|..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~  164 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH  164 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence            88787  99999997444446889999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.18  E-value=3.7e-11  Score=97.74  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.|++-|++ +|+..+..++.-|+++... ++.....+...+++|.|+++|+. .+++++..|+|+|.||+...++..
T Consensus       129 ~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~  205 (252)
T 4hxt_A          129 GVEVLVKLLTS-TDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAI  205 (252)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            36777777887 5888899999999887643 22222235557999999999985 468999999999999999999888


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..++  |+||.|++ |+..+..++.|+|+|+|.||....+.
T Consensus       206 ~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          206 KAIVDAGGVEVLQK-LLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHCCCHHHHHH-HHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            8888  99999997 77778899999999999999987654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.16  E-value=9.3e-11  Score=96.75  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      -++.|+.-|++ +++..+..++.-|+++...  ++.- ..+...++||.|+++|+.+ +++++..|+|+|.||+...++.
T Consensus        97 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           97 ALPALVQLLSS-PNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHH
Confidence            35667777787 5888888888888877433  2221 2355568999999999864 6899999999999999999988


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ...++  |+||.|++ |+..++.++.+.|+|+|.||+...+.
T Consensus       173 ~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~  213 (252)
T 4db8_A          173 IQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNE  213 (252)
T ss_dssp             HHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            88887  99999997 77778999999999999999965554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.08  E-value=2.5e-10  Score=100.77  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.+++.|++.+++..|..++.-|+++.....+ ....+...++||.|+++|+.+ +++++..|+|+|.||++..++..
T Consensus        65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-QTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence            4778888888744889999999999998864311 111233468999999999864 79999999999999999988887


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ..++  ++||.|++.|.+.+..++.++++|+|.||+.+.
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            7777  999999974443478999999999999999765

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.07  E-value=1.5e-10  Score=106.21  Aligned_cols=118  Identities=18%  Similarity=0.153  Sum_probs=87.9

Q ss_pred             HHHHHHHHhcCCCH---HHHHHHHHHHHHHhhc--CCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         126 AQQLLVSLQAIGDE---DQQLQAVVEMCQMLVM--GNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       126 l~~Ll~~L~S~~D~---~~QLeAL~eLrelLSm--snep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      ++.|++-|++..+.   ..+-.++--|+.+-+.  .+++....+...+.||.||++|+. .++++|.+|+|+|.||+...
T Consensus       216 i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~  294 (354)
T 3nmw_A          216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARN  294 (354)
T ss_dssp             HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCC
Confidence            34455566653222   2444455445443321  223333335567999999999986 46889999999999999889


Q ss_pred             chhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         201 PRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       201 p~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      +++...++  |+||.|++ |+.+.+.++.|.|.|+|.||+.+.|..+
T Consensus       295 ~~~~~~i~~~G~i~~Lv~-LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          295 PKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHHTTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            99998888  99999996 8888999999999999999999887654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=99.76  Aligned_cols=75  Identities=17%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             cChHHHHHHhcCCCCC-ccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         167 KQVVPALITLLSMDHN-FDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n-~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      .--+|.||++|+.++. +++|..|+|+|.|++...++....|+  |+||.|++ ||.+++.++.|+|+|||.||+.+++
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~-lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ-LLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            4569999999987652 38999999999999999999988888  99999997 7788999999999999999998655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.02  E-value=3.2e-10  Score=104.28  Aligned_cols=113  Identities=12%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|+.-|++ .++..+..++.-|+.+.... ++....+...+++|.|+++|+.+.+++++.+|||+|.||+.+.+++..
T Consensus       288 v~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~  365 (528)
T 4b8j_A          288 CPRLVELLLH-PSPSVLIPALRTVGNIVTGD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ  365 (528)
T ss_dssp             HHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHcC-CChhHHHHHHHHHHHHHcCC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence            4667777777 48888888999888876532 222222344689999999999765799999999999999999998888


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .++  ++||.|++ |+.....++.+.|+|+|.||+...
T Consensus       366 ~~~~~~~i~~L~~-lL~~~~~~v~~~a~~aL~nl~~~~  402 (528)
T 4b8j_A          366 AVINAGIIGPLVN-LLQTAEFDIKKEAAWAISNATSGG  402 (528)
T ss_dssp             HHHHTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHcCC
Confidence            888  99999997 666678999999999999999873

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.01  E-value=3.1e-10  Score=107.96  Aligned_cols=116  Identities=18%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcCCCH---HHHHHHHHHHHHHhhc--CCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         126 AQQLLVSLQAIGDE---DQQLQAVVEMCQMLVM--GNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       126 l~~Ll~~L~S~~D~---~~QLeAL~eLrelLSm--snep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      ++-|++-|++..+.   ..+-.++--|+.+-+.  .+++....+...+.||.||++|+. .++++|.+|||+|.||+...
T Consensus       332 l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~  410 (458)
T 3nmz_A          332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARN  410 (458)
T ss_dssp             HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCC
Confidence            34445555553222   2444555555544321  223333345567999999999986 46889999999999999999


Q ss_pred             chhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         201 PRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       201 p~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      +++...++  |+||.|++ |+...+.++.|.|.|+|.||+...|.
T Consensus       411 ~~~~~~i~~~G~I~~Lv~-LL~s~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          411 PKDQEALWDMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHHHHHHTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence            99999888  99999997 88888999999999999999988765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.00  E-value=3.6e-10  Score=105.79  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|++-|.+ +++..+..++.-|+.+.+.. +.....+...+++|.|+++|+. .+++++.+|||+|.||+.+.+++..
T Consensus       295 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~  371 (529)
T 3tpo_A          295 VPQLVKLLGA-TELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQ  371 (529)
T ss_dssp             HHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHhcC-CChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHH
Confidence            4567777787 58889999999999887542 2111224457999999999985 4689999999999999999999999


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      .|+  |+||.|++ |+.....++.+.|+|||.|++.....
T Consensus       372 ~v~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nl~~~~~~  410 (529)
T 3tpo_A          372 QVVNHGLVPFLVG-VLSKADFKTQKAAAWAITNYTSGGTV  410 (529)
T ss_dssp             HHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence            888  99999997 67778899999999999999875433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.96  E-value=1.6e-09  Score=97.94  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.++..|++.+|+..+..++..|+++ +... ++...+...+.||.|+++|+.+ ++++|..|+|+|.||+...+...
T Consensus        60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           60 MVSAIVRTMQNTNDVETARCTAGTLHNL-SHHR-EGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCc-hhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchH
Confidence            4677788887645889999999999984 4432 2333455679999999999875 59999999999999999988887


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ..++  |+||.|++ |+..++.++.+.+..+|.||+..+
T Consensus       137 ~~i~~~g~i~~L~~-ll~~~~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A          137 MAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHHTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHhCC
Confidence            7777  99999997 777788999999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=98.96  E-value=7e-10  Score=109.01  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.||+-|++ +++..|..|+..|+.+-...++++-..+...|.||.||++|+..+++++|..|+|||.|++. .++.-
T Consensus        91 ~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k  168 (584)
T 3l6x_A           91 GIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIK  168 (584)
T ss_dssp             HHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGH
T ss_pred             CcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchhh
Confidence            45778888888 59999999999999887543344444466789999999999976678999999999999987 56555


Q ss_pred             HHHh-ccHHHHHHHhh-----------------cCCChhHHHHHHHHHHHhhhhch
Q psy1198         205 AVVL-DAVPTFLEKLQ-----------------VIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLL-----------------si~yiDVAEQALwALenISgD~p  242 (249)
                      ..++ ++||.|++.|.                 ++++++|.|+|.|||.|+|.+++
T Consensus       169 ~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~  224 (584)
T 3l6x_A          169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS  224 (584)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCH
Confidence            6666 99999998542                 34578999999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.91  E-value=6e-10  Score=104.27  Aligned_cols=115  Identities=10%  Similarity=0.085  Sum_probs=92.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|++-|++ +++..+..++..|+.+.... +.....+...+++|.|+.+|+. .+++++.+|||+|.||+...+++..
T Consensus       276 i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~  352 (510)
T 3ul1_B          276 VPQLVKLLGA-TELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQ  352 (510)
T ss_dssp             HHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chhhhhhhcC-CChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHH
Confidence            4667777887 58889999999998877542 2211224456899999999985 4689999999999999999999999


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      .|+  |+||.|++ ++.....++.+.|+|||.|++.....+
T Consensus       353 ~v~~~g~i~~Lv~-lL~~~~~~v~~~Aa~aL~Nl~~~~~~~  392 (510)
T 3ul1_B          353 QVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVE  392 (510)
T ss_dssp             HHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHhcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHccCCHH
Confidence            888  99999997 667788999999999999998765443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.90  E-value=3.1e-09  Score=97.41  Aligned_cols=115  Identities=10%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCc---cHHHHHHHHHHHHHh---
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNF---DMMNNACRALTYMME---  198 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~---dLQ~eAArALTNIas---  198 (249)
                      ++.||+-|.+..++..+-.++.-|..+-... ++.-..+. ..+.||.||++|..++..   +++..|+|+|.||+.   
T Consensus       172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a  250 (354)
T 3nmw_A          172 VKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA  250 (354)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence            5667766543247777766777776654422 11111232 579999999999865432   689999999999998   


Q ss_pred             cCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         199 ALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       199 gtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      +.+++...|+  |+||.|++ |+.....++.|+|+|+|.||+...+
T Consensus       251 ~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~  295 (354)
T 3nmw_A          251 TNEDHRQILRENNCLQTLLQ-HLKSHSLTIVSNACGTLWNLSARNP  295 (354)
T ss_dssp             TCHHHHHHHHTTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             CCHHHHHHHHHcCCHHHHHH-HHcCCChHHHHHHHHHHHHHhCCCH
Confidence            7898888888  99999997 6777889999999999999995443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.89  E-value=4.4e-09  Score=106.95  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-CCCCC------------------------------CCCCccChHHH
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMG-NEDTL------------------------------TGFPVKQVVPA  172 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSms-nep~I------------------------------~~fp~~glVP~  172 (249)
                      .-++.||+-|++ +|+..|+.++.-|.++-.-. .+..+                              ..+...|.||.
T Consensus       421 g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          421 ASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             chHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            346778888888 59999999999998876532 11100                              11223489999


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         173 LITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       173 LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ||++|+. .++++|.+|+|+|.||+ +.+++...|+  |+||.|++ |+...+.++.|+|.|||.||+...
T Consensus       500 LV~LL~s-~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~-LL~s~~~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          500 LCALAKT-ESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLR-MALEGTEKGKRHATQALARIGITI  567 (810)
T ss_dssp             HHHHHTC-CCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHH-HHccCCHHHHHHHHHHHHHHhcCC
Confidence            9999986 46999999999999998 5677777777  99999997 777788899999999999998753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.86  E-value=2.5e-09  Score=98.86  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|+..|++ .++..+..++.-|+.+.... +.....+...+++|.|+.+|+.+ ++.++.+|+|+|.||+.+.+++..
T Consensus       301 v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~  377 (530)
T 1wa5_B          301 PKRLVELLSH-ESTLVQTPALRAVGNIVTGN-DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ  377 (530)
T ss_dssp             HHHHHHGGGC-SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHCC-CChhhHHHHHHHHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4566777776 58888888888888766432 11111233458999999999865 699999999999999999999988


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .++  ++||.|++ ++..+..++.+.|+|+|.||+...
T Consensus       378 ~~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          378 AVIDANLIPPLVK-LLEVAEYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHhcC
Confidence            888  99999997 666678999999999999998864

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.86  E-value=4.4e-09  Score=106.93  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC-CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT-GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~-~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++-||.-|++ +++..+..|...|.++....++..+. .....+.||.|+++|..+.+...+++|+|||+||++..++..
T Consensus       538 ip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~  616 (810)
T 3now_A          538 VKALLRMALE-GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR  616 (810)
T ss_dssp             HHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence            4666777888 58888889999999887654332221 111246899999999865455567999999999999988888


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      ..||  |+||.|++ |+..+...|.+.|+|+|.||+.
T Consensus       617 ~~Ii~aG~l~~Lv~-LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          617 QRIIKEQGVSKIEY-YLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             HHHHHTTHHHHHHH-HHHSCCTTHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhC
Confidence            8888  99999997 6667889999999999999987

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.83  E-value=7.8e-09  Score=102.38  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.|+..|++.+|+..+..|+..|++ |+... ++...+...+.||.|+++|+.+ ++++|++|+|||.||+...++..
T Consensus       193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          193 MVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             hHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhH
Confidence            456677778764588999999999998 55543 2233455669999999999875 69999999999999999998888


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ..|+  |+||.|++ |+..++.++.+.++.+|.+++..+
T Consensus       270 ~~v~~~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          270 MAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhcCC
Confidence            8887  99999997 777788999999999999998644

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=97.17  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      .-++.|+..|++.+|+..+..++..|++ |+...+ +...+...+.||.|+++|+.+ ++++|+.|+|+|.||+...++.
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchh
Confidence            3467888888874588999999999985 555432 333455569999999999875 5999999999999999998878


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ...++  |+||.|++ ++..++.++...++.+|.||+...
T Consensus       133 ~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~  171 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGN  171 (644)
T ss_dssp             HHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCChHHHHH-HHCcCCHHHHHHHHHHHHHHHhcC
Confidence            77777  99999997 667677777777777999999643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.63  E-value=1.7e-07  Score=84.64  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++.-+++ +++..+..++.-|+.+-...  +...  ...+++|.|+++|.. ++++++..|||+|.||+...++...
T Consensus       229 ~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~--~~~~--~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~  302 (529)
T 1jdh_A          229 MQALGLHLTD-PSQRLVQNCLWTLRNLSDAA--TKQE--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKM  302 (529)
T ss_dssp             HHHHHTTTTS-SCHHHHHHHHHHHHHHHTTC--TTCS--CCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHhC-CChHHHHHHHHHHHHHhcCC--hhhH--HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4555655666 47777777777777654332  2221  235899999999965 5799999999999999998888888


Q ss_pred             HHh--ccHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhchh
Q psy1198         206 VVL--DAVPTFLEKLQV-IQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLs-i~yiDVAEQALwALenISgD~p~  243 (249)
                      .++  ++||.|++.|.+ .+..++.+.++++|.||+.++|.
T Consensus       303 ~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~  343 (529)
T 1jdh_A          303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE  343 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred             HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence            887  999999985554 34489999999999999987654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.53  E-value=2.3e-07  Score=88.51  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.|+.-|++ +|+..|..++.-|+++.+.. ++....+...++||.|+++|+.+ +++++..++.||+||+.+.++..
T Consensus        99 ~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           99 GIPALVKMLGS-PVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             HHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHH
Confidence            46778888888 58999999999999988764 22222344579999999999875 57788888889999999999888


Q ss_pred             HHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         205 AVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       205 ~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      ..++  |+||.|++.|.+.++.++.+.++.+|.|++.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            8888  9999999866666678899999999999985

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.45  E-value=2.3e-07  Score=91.93  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      -++.|+.-|++ +|+..+..|+.-|.++-...  +....+. ..++||.||++|+.+++++++..|+++|.||+.. ++.
T Consensus       151 ~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~  226 (780)
T 2z6g_A          151 AIPELTKLLND-EDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REG  226 (780)
T ss_dssp             HHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHH
T ss_pred             CHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            35667777777 58888888888887754331  1111222 2479999999998766899999999999997664 555


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      ...++  |+||.|++ |+..++.+|.+.|+|+|.||+.+.+
T Consensus       227 ~~~i~~~g~I~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~  266 (780)
T 2z6g_A          227 LLAIFKSGGIPALVN-MLGSPVDSVLFHAITTLHNLLLHQE  266 (780)
T ss_dssp             HHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCh
Confidence            55555  99999997 7777889999999999999998753

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1.1e-05  Score=82.26  Aligned_cols=117  Identities=16%  Similarity=0.160  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCH--HHHHHHHHHHHHHhhcCCCCCC--CCCCccChHHHHHHhcCC-CCC-----------ccH-HHH
Q psy1198         126 AQQLLVSLQAIGDE--DQQLQAVVEMCQMLVMGNEDTL--TGFPVKQVVPALITLLSM-DHN-----------FDM-MNN  188 (249)
Q Consensus       126 l~~Ll~~L~S~~D~--~~QLeAL~eLrelLSmsnep~I--~~fp~~glVP~LV~iLs~-e~n-----------~dL-Q~e  188 (249)
                      ++.||.-|.+..+.  ..+..|.+.|.+++... +|.+  ......+.||.|+++|.. +..           +.+ +|+
T Consensus       500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe  578 (778)
T 3opb_A          500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE  578 (778)
T ss_dssp             HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence            56677777763222  15678999999988543 3322  122234899999999983 111           124 899


Q ss_pred             HHHHHHHHHhcCc---hh-HHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         189 ACRALTYMMEALP---RS-SAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       189 AArALTNIasgtp---~q-T~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      |++|||||++...   +. -..+|   |++|.|.+ |+.+++..|.+.|+|+|-|++. +|..|
T Consensus       579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~-LL~s~n~~VrrAA~elI~NL~~-~~e~i  640 (778)
T 3opb_A          579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN-LMLDENVPLQRSTLELISNMMS-HPLTI  640 (778)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH-GGGCSSHHHHHHHHHHHHHHHT-SGGGT
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH-HHhCCCHHHHHHHHHHHHHHhC-CcHHH
Confidence            9999999999752   22 24455   79999998 6666888999999999999997 55543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.04  E-value=4.5e-05  Score=61.19  Aligned_cols=93  Identities=19%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++..|++ +|+..+..++..|.++-            ....+|.|+++|+. .++.++..|+|+|.++.+  +    
T Consensus        78 ~~~L~~~l~d-~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~----  137 (201)
T 3ltj_A           78 VEPLIKALKD-EDGWVRQSAAVALGQIG------------DERAVEPLIKALKD-EDWFVRIAAAFALGEIGD--E----  137 (201)
T ss_dssp             HHHHHHHTTC-SSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC--G----
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHhC------------cHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC--H----
Confidence            4555555555 46666666666665531            12467777777753 357777777777777643  1    


Q ss_pred             HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                         .++|.|++ ++..++.+|+.+++++|++|..+..
T Consensus       138 ---~~~~~L~~-~l~d~~~~vr~~A~~aL~~~~~~~~  170 (201)
T 3ltj_A          138 ---RAVEPLIK-ALKDEDGWVRQSAADALGEIGGERV  170 (201)
T ss_dssp             ---GGHHHHHH-HTTCSSHHHHHHHHHHHHHHCSHHH
T ss_pred             ---HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCchhH
Confidence               46777775 5555677788888888888754433

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.03  E-value=8.2e-06  Score=79.94  Aligned_cols=75  Identities=13%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      .++| +++.|+.. +++.+..|||||+||++ .|+.-..++  +.|+.++.+|+.-++.+|+++|.|||.||+.+.+.++
T Consensus        35 ~i~P-ll~~L~S~-~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILP-VLKDLKSP-DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHH-HHHHHSSS-CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHH-HHHHcCCC-CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            4566 44668764 69999999999999998 454545555  8888887788888899999999999999999875443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.98  E-value=6e-05  Score=60.88  Aligned_cols=100  Identities=17%  Similarity=0.075  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..++.++..|++ +|+..+..++..|.++-.            ...+|.|+++|++ .++.++..|+|+|.++.+  ++.
T Consensus        19 ~~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~--~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQD-DSYYVRRAAAYALGKIGD------------ERAVEPLIKALKD-EDAWVRRAAADALGQIGD--ERA   82 (211)
T ss_dssp             GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC--GGG
T ss_pred             hHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC--HHH
Confidence            446666666665 467777666666665321            2345555555543 245555555555555432  100


Q ss_pred             HH---------------HH---------hccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         204 SA---------------VV---------LDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       204 T~---------------~V---------VGAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      ..               ..         -.++|.|++ +++.++.+|+..++++|++|...
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~  142 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK-ALKDEDWFVRIAAAFALGEIGDE  142 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCH
Confidence            00               00         036777775 55667777777777777777543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.97  E-value=8.1e-05  Score=59.67  Aligned_cols=63  Identities=19%  Similarity=0.072  Sum_probs=39.0

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ..+|.|+++|+. .++.++..|+|+|.++.+  +       .++|.|++ ++..++.+|+..++|+|++|....
T Consensus        76 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~  138 (201)
T 3ltj_A           76 RAVEPLIKALKD-EDGWVRQSAAVALGQIGD--E-------RAVEPLIK-ALKDEDWFVRIAAAFALGEIGDER  138 (201)
T ss_dssp             GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--G-------GGHHHHHH-HTTCSSHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCHH
Confidence            345555555543 345566666666655532  1       46777775 556677778888888888876443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.95  E-value=7.8e-05  Score=60.23  Aligned_cols=67  Identities=19%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      ..+|.|+++|++ .+++++..|+++|.++.+  +       .++|.|++ +++.++..|+..++++|++|..+.....
T Consensus       112 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~-------~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~~~~~  178 (211)
T 3ltm_A          112 RAVEPLIKALKD-EDWFVRIAAAFALGEIGD--E-------RAVEPLIK-ALKDEDGWVRQSAADALGEIGGERVRAA  178 (211)
T ss_dssp             GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--G-------GGHHHHHH-HTTCSSHHHHHHHHHHHHHHCSHHHHHH
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCchhHHHH
Confidence            466777777643 456777777777777632  1       46788886 5666778888888888888865443333

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.89  E-value=1.9e-05  Score=60.64  Aligned_cols=88  Identities=20%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|++.|++ +|+..+..++..|.++=            ....+|.|+++|+ +.++.+...|+|+|.+|.+  +    
T Consensus        44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~------------~~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~--~----  103 (131)
T 1te4_A           44 FEPLLESLSN-EDWRIRGAAAWIIGNFQ------------DERAVEPLIKLLE-DDSGFVRSGAARSLEQIGG--E----  103 (131)
T ss_dssp             HHHHHHGGGC-SCHHHHHHHHHHHGGGC------------SHHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS--H----
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--H----
Confidence            6788888887 68988888887775531            1357999999996 4579999999999999863  1    


Q ss_pred             HHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                         .++|.|++ +++.++.+|++.|+++|++|
T Consensus       104 ---~a~~~L~~-~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A          104 ---RVRAAMEK-LAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ---HHHHHHHH-HTTSCCTHHHHHHHHHGGGC
T ss_pred             ---HHHHHHHH-HHhCCCHHHHHHHHHHHHhC
Confidence               57899997 55668889999999999986

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.86  E-value=6e-05  Score=66.18  Aligned_cols=117  Identities=12%  Similarity=0.021  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCc
Q psy1198         125 KAQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       125 rl~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp  201 (249)
                      -++.|++.+++ +  |+..+..++.-|.++......+.+..+ ...++|.|+++|+.++ +++++..|++||.++++...
T Consensus       129 ll~~L~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45667777777 5  777777777777766653211112222 2468999999998765 79999999999999887654


Q ss_pred             hhHH--HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         202 RSSA--VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       202 ~qT~--~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      +...  .+. -.++.|++ ++..++.+++++++++|..|....++.
T Consensus       207 ~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3321  112 24777775 667788999999999999999888764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.81  E-value=4.9e-05  Score=74.22  Aligned_cols=116  Identities=13%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCC----CCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNED----TLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep----~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp  201 (249)
                      ++.+++.+++ +|+..+..++.-|.++.....+.    .+ .-+...++|.|+++|+. .+++++..|++||.++++..+
T Consensus       130 l~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~-~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          130 LPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVL-DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSS-SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhh-cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccc
Confidence            4566667777 47776666666665555332110    11 12245789999999984 579999999999999998877


Q ss_pred             hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         202 RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       202 ~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      ......+ ..+|.|++ ++..+..+|+++++|+|.+|+...|+.+
T Consensus       207 ~~~~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~~l~~~~~~~~  250 (852)
T 4fdd_A          207 QALMLHIDSFIENLFA-LAGDEEPEVRKNVCRALVMLLEVRMDRL  250 (852)
T ss_dssp             HHHHTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            6544444 88899996 6666889999999999999999888653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.62  E-value=0.00035  Score=58.27  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198         128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVV  207 (249)
Q Consensus       128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~V  207 (249)
                      .+.+.+.+ .|.....+++..|.+++.-.  +.+..-....+++.|.+.|.++.|+.++..|+.||..|+..........
T Consensus        19 ~l~~~l~s-~~w~~R~~a~~~L~~l~~~~--~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEE-KKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTC-SSHHHHHHHHHHHHHHHHHC--SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhcc-CCHHHHHHHHHHHHHHHccC--CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            36667777 48999999999999998762  2222112357899999999645789999999999999999877665555


Q ss_pred             h-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         208 L-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       208 V-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      + -.+|.|+++|-+ +...|++.+..+|..|....
T Consensus        96 ~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~  129 (242)
T 2qk2_A           96 ASACVPSLLEKFKE-KKPNVVTALREAIDAIYAST  129 (242)
T ss_dssp             HHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcC
Confidence            5 889999986655 67889999999999987643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.58  E-value=0.00043  Score=58.20  Aligned_cols=90  Identities=19%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV  206 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~  206 (249)
                      +.++..|++ +|+..+..++..|.++            .....+|.|+++|+. +++++...|+|+|.+|....+     
T Consensus       131 ~~L~~~l~d-~~~~vR~~a~~aL~~~------------~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~-----  191 (280)
T 1oyz_A          131 EQSQITAFD-KSTNVRRATAFAISVI------------NDKATIPLLINLLKD-PNGDVRNWAAFAININKYDNS-----  191 (280)
T ss_dssp             HHHHHHTTC-SCHHHHHHHHHHHHTC---------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH-----
T ss_pred             HHHHHHhhC-CCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH-----
Confidence            333444454 4566665555555432            112467788887764 457778888888877632111     


Q ss_pred             HhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         207 VLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       207 VVGAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                        .++|.|++ ++..++.+|+..++|+|++|.
T Consensus       192 --~~~~~L~~-~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          192 --DIRDCFVE-MLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             --HHHHHHHH-HTTCSCHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHH-HhcCCCHHHHHHHHHHHHHhC
Confidence              34566664 444456666677777776665

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.57  E-value=0.00014  Score=69.40  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=62.0

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..++|.+.++|. +.+|.+...||+||++|+...|+.... -+.+|.|.+ |++.++..|...|+++|.+|..+.|.
T Consensus       120 ~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~-lL~d~d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          120 EYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRD-LIADSNPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             HHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHH-TTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHH-HhCCCChhHHHHHHHHHHHHHhhCCC
Confidence            457888999997 457999999999999999988874321 167899997 66778899999999999999998773

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.53  E-value=7.1e-05  Score=73.10  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH-HH
Q psy1198         128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS-AV  206 (249)
Q Consensus       128 ~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT-~~  206 (249)
                      .+.+.+++ .++.....|+..|..+.....+ .+.. ....++|.|+.+|+. .++.+...|||||.++++..+.+. ..
T Consensus       363 ~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~  438 (852)
T 4fdd_A          363 LLKELLFH-HEWVVKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDT  438 (852)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHH
Confidence            33445666 4888888888888887654321 1111 135789999999964 579999999999999999776543 22


Q ss_pred             Hh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         207 VL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       207 VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      .. ..+|.|++.| ..+..+|++.|+|+|.+|....+..
T Consensus       439 ~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          439 YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             THHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            23 8899999754 4467899999999999999776654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00031  Score=71.64  Aligned_cols=110  Identities=10%  Similarity=0.113  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCC-CCCCccC------hHHHHHHhcCCCCCccHHHHHHHHHHHHHh
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTL-TGFPVKQ------VVPALITLLSMDHNFDMMNNACRALTYMME  198 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I-~~fp~~g------lVP~LV~iLs~e~n~dLQ~eAArALTNIas  198 (249)
                      ++.|++-|.+ +++..|-+|+.-+|.+..  +.+.| ..|-...      -++.||.+|+. +++++|..|+|+|.|+.+
T Consensus       608 ~~~L~~LL~s-~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          608 WSTIENLMLD-ENVPLQRSTLELISNMMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             HHHHHHGGGC-SSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence            3444555566 578888899999999885  23344 2332111      27889999965 579999999999999999


Q ss_pred             cCchhHHHHh---ccHHHHHHHhhcC-CChhHHHHHHHHHHHhhh
Q psy1198         199 ALPRSSAVVL---DAVPTFLEKLQVI-QCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       199 gtp~qT~~VV---GAVPiL~~kLLsi-~yiDVAEQALwALenISg  239 (249)
                      ..|.-+..++   +.|+.|++.|.+. +..+|..-++-+|-||+.
T Consensus       684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            9998888888   7899999855553 899999999999999997

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.52  E-value=0.00042  Score=58.31  Aligned_cols=108  Identities=11%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      -++.++..|++ +|+..+..++..|.++-..  ...     ...+++.|.+.+..+.++.++..|+|+|.++....|...
T Consensus        55 ~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~--~~~-----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~  126 (280)
T 1oyz_A           55 AVRLAIEFCSD-KNYIRRDIGAFILGQIKIC--KKC-----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS  126 (280)
T ss_dssp             HHHHHHHHHTC-SSHHHHHHHHHHHHHSCCC--TTT-----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHhccc--ccc-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc
Confidence            45666666776 4777777777666553210  000     112344444322334567778888888887764322111


Q ss_pred             H--------------------H---Hh-----ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         205 A--------------------V---VL-----DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       205 ~--------------------~---VV-----GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      .                    +   +.     .++|.|++ ++..++.+|+..++|+|++|..+.
T Consensus       127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~  190 (280)
T 1oyz_A          127 PKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLIN-LLKDPNGDVRNWAAFAININKYDN  190 (280)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHH-HHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHhhccCc
Confidence            0                    0   00     37788886 556677788888888888875333

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.45  E-value=9.9e-05  Score=72.30  Aligned_cols=119  Identities=14%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHH-HhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198         121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI-TLLSMDHNFDMMNNACRALTYMMEA  199 (249)
Q Consensus       121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV-~iLs~e~n~dLQ~eAArALTNIasg  199 (249)
                      ....++..+|+.|+| .|+..+..|+..|+++...  ..+...+...++|+.++ .+|. +.+.+++.+|+|||-||+.-
T Consensus        31 ~~~~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           31 LREDKILPVLKDLKS-PDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             HHHHTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhh
Confidence            344567788999999 5898898899999988632  22222355567777665 4565 56799999999999999854


Q ss_pred             -CchhHHHHh--ccHHHHHHHhhcCC--------------------ChhHHHHHHHHHHHhhhhchh
Q psy1198         200 -LPRSSAVVL--DAVPTFLEKLQVIQ--------------------CMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       200 -tp~qT~~VV--GAVPiL~~kLLsi~--------------------yiDVAEQALwALenISgD~p~  243 (249)
                       -++....++  +++|.|+..|.++.                    ..|++|+++++|-+++--+.+
T Consensus       107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~  173 (684)
T 4gmo_A          107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE  173 (684)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence             355555566  99999987443211                    147899999999988854443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.36  E-value=0.00025  Score=54.37  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      +|.|+++|++ .++.++..|+|+|.+|.+  +       .++|.|++ ++..++.+|+..++|+|++|....
T Consensus        44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~~--~-------~a~~~L~~-~L~d~~~~VR~~A~~aL~~~~~~~  104 (131)
T 1te4_A           44 FEPLLESLSN-EDWRIRGAAAWIIGNFQD--E-------RAVEPLIK-LLEDDSGFVRSGAARSLEQIGGER  104 (131)
T ss_dssp             HHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H-------HHHHHHHH-HHHHCCTHHHHHHHHHHHHHCSHH
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHhcCC--H-------HHHHHHHH-HHcCCCHHHHHHHHHHHHHhCcHH
Confidence            6999999984 679999999999999864  1       46899997 556688999999999999997543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.31  E-value=0.0026  Score=53.00  Aligned_cols=110  Identities=11%  Similarity=0.077  Sum_probs=79.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-chh-H
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-PRS-S  204 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-p~q-T  204 (249)
                      +.|++.+.+ .++..+-.+...|..+...        ++...++|.|...|++ .++.++.+++.+|..+++-. |++ .
T Consensus       101 p~ll~~l~d-~~~~vr~~a~~aL~~~~~~--------~~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A          101 PSLLEKFKE-KKPNVVTALREAIDAIYAS--------TSLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHGGGC-CCHHHHHHHHHHHHHHHTT--------SCHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            444555565 3555555555666665542        2346799999999985 47999999999999988776 543 2


Q ss_pred             HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      ...+ -.+|.|++ +++-++.+|++.|..+|+.|..--+.+.+.
T Consensus       171 ~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~  213 (242)
T 2qk2_A          171 KKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGDKAVT  213 (242)
T ss_dssp             HHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3333 78999996 666688999999999999998877766443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0018  Score=55.99  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=82.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHH-HhhcCCCCCCC--CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc--hhH-H
Q psy1198         132 SLQAIGDEDQQLQAVVEMCQ-MLVMGNEDTLT--GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP--RSS-A  205 (249)
Q Consensus       132 ~L~S~~D~~~QLeAL~eLre-lLSmsnep~I~--~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp--~qT-~  205 (249)
                      .|.| .+.....+++.+|.. ++.-  .+-|.  .-+...++..|.+.|.++.|+.+...||.||..|++++.  +-. .
T Consensus        24 ~l~s-~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           24 RITS-SKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHTC-SSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             Hhhc-CCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4577 489999999999999 7743  33333  222357899999999767789999999999999999986  433 3


Q ss_pred             HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      ...-.+|.++++|-+ ....|.|.+..||..|....
T Consensus       101 y~~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~  135 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYY  135 (249)
T ss_dssp             HHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHc
Confidence            344789999998766 45789999999999998865

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.21  E-value=0.0019  Score=65.63  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..+..+++.+.+ .|++...+|+.+|.+.+... ...++.-....++|.|++.|. +.+++++..|+.||.++++..++.
T Consensus         6 ~~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~   82 (1230)
T 1u6g_C            6 YHISNLLEKMTS-SDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEY   82 (1230)
T ss_dssp             HHHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHhcCC-CCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHH
Confidence            568899999998 59999999999999977542 112222234578999999997 567999999999999999988872


Q ss_pred             HHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         204 SAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       204 T~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                        .+-..+|.|++.|. .+...+++.+..+|..|+.+.+.
T Consensus        83 --~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~  119 (1230)
T 1u6g_C           83 --QVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPP  119 (1230)
T ss_dssp             --HHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-
T ss_pred             --HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCC
Confidence              22277888887554 46678999999999999977654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.12  E-value=0.00099  Score=63.60  Aligned_cols=116  Identities=12%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCch
Q psy1198         126 AQQLLVSLQAIG--DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       126 l~~Ll~~L~S~~--D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~  202 (249)
                      ++.+++.+++ +  |+..+..+++-|..+......+.+.. ....++|.|+++|+.++ +++++..|.+||.++++.++.
T Consensus       130 l~~l~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          130 IPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4556666776 5  77776667777766664321111111 13468888899998764 689999999999999987664


Q ss_pred             hHHH-Hh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         203 SSAV-VL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       203 qT~~-VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      .... ..  ..++.+++ ++..+..+++++++++|..|....|+.
T Consensus       208 ~~~~~~~~~~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            4321 11  35777776 566678899999999999999988764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.06  E-value=0.0014  Score=59.29  Aligned_cols=111  Identities=13%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..+..+++.|++ +|+.....|++.|.++.....  +  .-....++|.|.+.+  +++++++..++.+|.++.+-....
T Consensus        10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~--~--~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~   82 (588)
T 1b3u_A           10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALG--V--ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSC--H--HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhC--H--HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH
Confidence            347788888888 588887888888877654211  0  001235777777766  456788888888888877653322


Q ss_pred             HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         204 SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       204 T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                        ..+ ..+|.|.+ |+..++.+|++.++.+|.+|+...+..
T Consensus        83 --~~~~~ll~~L~~-l~~~~~~~vR~~a~~~L~~l~~~~~~~  121 (588)
T 1b3u_A           83 --EYVHCLLPPLES-LATVEETVVRDKAVESLRAISHEHSPS  121 (588)
T ss_dssp             --GGGGGGHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             --HHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHCCHH
Confidence              122 56777775 666677888888888888888776654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.03  E-value=0.0017  Score=56.92  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALP-RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp-~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ..++|.+.+.|+. .+..+...|+++|.+|+++.. +.....+ ..+|.|++ ++..++..|+..|+|+|++|+...+..
T Consensus       365 ~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~~~~~~~~~  442 (462)
T 1ibr_B          365 PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPEA  442 (462)
T ss_dssp             HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence            3577888888874 568999999999999999876 4334445 88999997 666688999999999999999887765


Q ss_pred             H
Q psy1198         245 I  245 (249)
Q Consensus       245 I  245 (249)
                      +
T Consensus       443 ~  443 (462)
T 1ibr_B          443 A  443 (462)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.01  E-value=0.0023  Score=60.98  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             HHHHhcCCCHHHHHH---HHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc----h
Q psy1198         130 LVSLQAIGDEDQQLQ---AVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP----R  202 (249)
Q Consensus       130 l~~L~S~~D~~~QLe---AL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp----~  202 (249)
                      +..+++ .++..+..   ++..+++.+...- ++ ..+ ...++|.|++.|+.+  +.++..|||+|.++++...    +
T Consensus       417 ~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~-~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~  490 (861)
T 2bpt_A          417 LNLMND-QSLQVKETTAWCIGRIADSVAESI-DP-QQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS  490 (861)
T ss_dssp             HHGGGC-SCHHHHHHHHHHHHHHHHHHGGGS-CT-TTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHcCC-CcHHHHHHHHHHHHHHHHHhhhhc-CC-HHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence            334454 46655443   4455555543210 00 112 357899999999643  8999999999999999864    2


Q ss_pred             hHHHHh-ccHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhchhHH
Q psy1198         203 SSAVVL-DAVPTFLEKLQVIQ-CMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       203 qT~~VV-GAVPiL~~kLLsi~-yiDVAEQALwALenISgD~p~aI  245 (249)
                      ...-.+ ..+|.|++.|.+.+ ..+|.+.++++|+.|....+..+
T Consensus       491 ~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~  535 (861)
T 2bpt_A          491 PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV  535 (861)
T ss_dssp             GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred             hhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh
Confidence            232333 67888886443322 26899999999999998777653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.0075  Score=51.98  Aligned_cols=112  Identities=8%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcCCCHHHH---HHHHHHHHHHhhcCCCCCCCCCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198         126 AQQLLVSLQAIGDEDQQ---LQAVVEMCQMLVMGNEDTLTGFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~Q---LeAL~eLrelLSmsnep~I~~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp  201 (249)
                      ++.|++.+++. .+..+   ..++..+++.    .+|. ...+ .+.+++.|+..|++. ++.++.++..+|..+++..+
T Consensus       106 lp~ll~~l~dk-k~~V~~aa~~al~~i~~~----~~~~-~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          106 FTPLLDRTKEK-KPSVIEAIRKALLTICKY----YDPL-ASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHGGGCC-CHHHHHHHHHHHHHHHHH----SCTT-CTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHHHHH----cccc-ccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence            45666667653 44433   2344444443    2332 2222 457999999999875 79999999999999999888


Q ss_pred             h---hHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         202 R---SSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       202 ~---qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      .   +....+  ..||.|++ +++-+..+|+++|..||+.|.+--++.-
T Consensus       179 ~~~~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~~~vG~~~  226 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILIKIFGMNT  226 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred             CcchhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence            4   322233  78899996 6666789999999999999887666543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.91  E-value=0.0025  Score=60.87  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc-hhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALP-RSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp-~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..++|.+.+.|+. .++.++..|+|+|.+|+++.+ +.....+ ..||.|++ ++..++..|++.|+|+|++++...+.
T Consensus       365 ~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          365 PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            4677888888864 569999999999999999887 5444455 88999997 55667899999999999999988664

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.89  E-value=0.0027  Score=57.50  Aligned_cols=102  Identities=11%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-
Q psy1198         130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-  208 (249)
Q Consensus       130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-  208 (249)
                      +..|++ ++...+..++..|.+++..-.++    +....++|.|+++++ +.++.+...+++||..|++..+..  .+. 
T Consensus       447 ~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~~--~~~~  518 (588)
T 1b3u_A          447 MAWLVD-HVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQD--ITTK  518 (588)
T ss_dssp             HHGGGC-SSHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred             HHHhcC-CcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCHH--HHHH
Confidence            344554 35666666666666665442111    113467787777665 345777888888888888765543  233 


Q ss_pred             ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      ..+|.|++ ++.-+..+|+..++|+|+.|...
T Consensus       519 ~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          519 HMLPTVLR-MAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHh-hCCCCCchHHHHHHHHHHHHHHH
Confidence            77888885 66667788999999999988864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.85  E-value=0.0014  Score=62.45  Aligned_cols=112  Identities=16%  Similarity=0.206  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC---
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL---  200 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt---  200 (249)
                      ..+..|+..+.. .|+-.|...++-|.++...  ++    -....+++.+..+|++ .++.+.++|+|+|.++.+..   
T Consensus       202 ~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~--~~----~~~~~~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          202 QNINKLLTALNE-CTEWGQIFILDCLSNYNPK--DD----REAQSICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             HHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCC--SH----HHHHHHHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBT
T ss_pred             HHHHHHHHcCCC-CCchHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCC
Confidence            347788888877 4888777666544433211  00    0124688888888875 56899999999999998754   


Q ss_pred             chhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         201 PRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       201 p~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      |+....++ .++|.|+. |++ ++.+|+--+|.+|.+|...+|+.+
T Consensus       274 ~~~~~~~~~~~~~~L~~-L~~-~d~~vr~~aL~~l~~i~~~~p~~~  317 (591)
T 2vgl_B          274 SDYYNMLLKKLAPPLVT-LLS-GEPEVQYVALRNINLIVQKRPEIL  317 (591)
T ss_dssp             TBSHHHHHHHTHHHHHH-HTT-SCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             HHHHHHHHHHHHHHHHH-Hhc-CCccHHHHHHHHHHHHHHhChHHH
Confidence            55566566 88899995 766 778999999999999999888754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.57  E-value=0.0077  Score=57.37  Aligned_cols=116  Identities=19%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC---CCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCc
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN---EDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn---ep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp  201 (249)
                      ++.++..+++  ++..+..++..|..+.....   .+.+..+ ...++|.|+++|+..+ +++++..++++|.+|++..+
T Consensus       456 l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~  532 (861)
T 2bpt_A          456 VQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT  532 (861)
T ss_dssp             HHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHH-HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence            3445556654  36555555555544443221   1222222 2467888899998643 48899999999999999999


Q ss_pred             hhHHHHh-ccHHHHHHHhhcC--------------CChhHHHHHHHHHHHhhhhchhH
Q psy1198         202 RSSAVVL-DAVPTFLEKLQVI--------------QCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       202 ~qT~~VV-GAVPiL~~kLLsi--------------~yiDVAEQALwALenISgD~p~a  244 (249)
                      +.....+ ..+|.|+++|...              ++.++...++++|.+|....+..
T Consensus       533 ~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  590 (861)
T 2bpt_A          533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS  590 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            8876666 8889999877642              25668889999999998766553

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.55  E-value=0.025  Score=56.80  Aligned_cols=141  Identities=16%  Similarity=0.172  Sum_probs=99.6

Q ss_pred             cchhHHHHhhCCCCCCCCCCccCccchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCCCCC--------C--
Q psy1198          94 TSLLSGVASSSSGPSHAPGAALDSESEDTATKAQQLLVSLQAI-GDEDQQLQAVVEMCQMLVMGNEDTL--------T--  162 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~~~~gs~~~~~~s~~~~rl~~Ll~~L~S~-~D~~~QLeAL~eLrelLSmsnep~I--------~--  162 (249)
                      +.|-.+++.-|++....+-       .-...-++.++..|+.+ +|.+..=..|.-|+.+++-..++.-        +  
T Consensus        37 eDRR~Av~~Lk~~sk~y~~-------~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~  109 (651)
T 3grl_A           37 DDRRNAVRALKSLSKKYRL-------EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL  109 (651)
T ss_dssp             HHHHHHHHHHHHTTTTTTT-------HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred             hHHHHHHHHHHHHHHHhHH-------HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence            4666677766666443331       11123488889888753 3555555667777787775433211        1  


Q ss_pred             ------CCC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhhcCCChhHHHHHH
Q psy1198         163 ------GFP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQVIQCMDVAEQSL  231 (249)
Q Consensus       163 ------~fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLLsi~yiDVAEQAL  231 (249)
                            .|. ....|+.|+.+|+. +++.+.+.+.++|+.|+...|+.+...|    ++||.|++ +|+.+..-|+-.++
T Consensus       110 ~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~-lL~d~rE~iRneal  187 (651)
T 3grl_A          110 GSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD-LLADSREVIRNDGV  187 (651)
T ss_dssp             HHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG-GGGCSSHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH-HHhCchHHHHHHHH
Confidence                  111 23569999999975 5699999999999999999999665555    89999997 77777899999999


Q ss_pred             HHHHHhhhhchh
Q psy1198         232 TALEMLSRRHSK  243 (249)
Q Consensus       232 wALenISgD~p~  243 (249)
                      -.|-+|+++++.
T Consensus       188 lLL~~Lt~~n~~  199 (651)
T 3grl_A          188 LLLQALTRSNGA  199 (651)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHhcCCHH
Confidence            999999998865

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=96.33  E-value=0.0045  Score=62.17  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCC-CCC-CC-ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198         123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDT-LTG-FP-VKQVVPALITLLSMDHNFDMMNNACRALTYMMEA  199 (249)
Q Consensus       123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~-I~~-fp-~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg  199 (249)
                      ...+.-+++-|++ +|.+..+-+++-|+-++.-.  |. ... +- ...-||+||.+|+.+ ...++.||.-.|++|...
T Consensus       121 ~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r--~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          121 QENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQL--GPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             THHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcC--cHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcC
Confidence            3456777888888 59999999999888777552  22 222 11 227899999999854 588999999999999999


Q ss_pred             CchhHHHHh--ccHHHHHHHhhcCCCh----hHHHHHHHHHHHhhhhch
Q psy1198         200 LPRSSAVVL--DAVPTFLEKLQVIQCM----DVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       200 tp~qT~~VV--GAVPiL~~kLLsi~yi----DVAEQALwALenISgD~p  242 (249)
                      +++-=..|+  ||++.|.+ +...+-.    -|.+-|+..|.|+.+..+
T Consensus       197 n~~iQklVAFEnaFe~Lf~-Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~  244 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLD-IITEEGNSDGGIVVEDCLILLQNLLKNNN  244 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHH-HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHhccHHHHHH-HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence            997766666  99999997 6654444    689999999999999886

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.24  E-value=0.013  Score=59.55  Aligned_cols=112  Identities=17%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh-
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS-  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q-  203 (249)
                      -++.+++.|.+ .++..+..|+..|+++.....++     -...+++.|++.|..+ ++.++..|+.+|..|++..+.. 
T Consensus        49 il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~~-----~~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           49 VVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKEY-----QVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCHH-----HHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcc
Confidence            35667778886 58888888999998887543221     1246788888888654 5788999999999999988764 


Q ss_pred             -----HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         204 -----SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       204 -----T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                           ..... ..+|.|++.|.+.+..++++.++.+|.++..+.++
T Consensus       122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~  167 (1230)
T 1u6g_C          122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  167 (1230)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence                 22334 78999997554467889999999999999976554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.11  Score=44.35  Aligned_cols=107  Identities=18%  Similarity=0.126  Sum_probs=74.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC--C-CccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh---
Q psy1198         130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG--F-PVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS---  203 (249)
Q Consensus       130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~--f-p~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q---  203 (249)
                      -+.|.+. +=...++|+++|.+++........+.  + ....+++.|-.+|. |.|..+|..++.||..++......   
T Consensus        15 ~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           15 EERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            3567774 77888999999999987643222211  1 12456777778885 678999999999999999865432   


Q ss_pred             ---HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         204 ---SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       204 ---T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                         ...++ ..+|.|++|.+.....-+.+.++.+|-.+.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~  131 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC  131 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence               33344 789999999777677778888888776554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=95.52  E-value=0.014  Score=56.17  Aligned_cols=72  Identities=15%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..++|.+.++|++ .+|.+..-|++||.+|+...|+...   ..+|.+.+ |++-++..|.-.|+++|..|....|+
T Consensus       141 ~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~---~~~~~l~~-lL~D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          141 RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME---MFLPATKN-LLNEKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG---GGGGGTTT-STTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH---HHHHHHHH-HhCCCCHhHHHHHHHHHHHHHHhChH
Confidence            3568888899975 5799999999999999999997543   66777775 66667889999999999999987764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=95.00  E-value=0.14  Score=46.56  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC--chhHHHHhcc
Q psy1198         133 LQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL--PRSSAVVLDA  210 (249)
Q Consensus       133 L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt--p~qT~~VVGA  210 (249)
                      +.+ .++-..+++...+-++      . +. -+...++..+..+| ...++++|-.+-++||||+.-+  |+....|+.-
T Consensus       124 ik~-~~~il~~eaae~Lgkl------k-v~-~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~e  193 (265)
T 3b2a_A          124 LES-PDDMMRIETIDVLSKL------Q-PL-EDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDE  193 (265)
T ss_dssp             TTS-CCHHHHHHHHHHHHHC------C-BS-CCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred             hcC-CCchHHHHHHHHhCcC------C-cc-cchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence            354 5777888887777766      1 11 12357788888888 4568999999999999999855  4445656666


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       211 VPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      ||-|+    ++++..|.|-+|.+|++|...
T Consensus       194 I~elL----~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          194 IPSLL----QNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHH----TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHH----cCCCHHHHHHHHHHHHHHHcC
Confidence            77655    567999999999999999764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.94  E-value=0.11  Score=54.16  Aligned_cols=107  Identities=20%  Similarity=0.211  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCc
Q psy1198         122 TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALP  201 (249)
Q Consensus       122 ~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp  201 (249)
                      ....+++|+..+.++.+...+-.|+..|..++..  ++        ..+|+++.+|.+..++.+.+-|++||-.|+-++|
T Consensus       575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~  644 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--DY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG  644 (963)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--SC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC--CH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence            3445666776665444555555666666655433  11        3589999988888889999999999999999998


Q ss_pred             hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ..     .+|..|. +|+.-+..+|+..|+-+|++|-.....+
T Consensus       645 ~~-----~aid~L~-~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          645 LQ-----SAIDVLD-PLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             CH-----HHHHHHH-HHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             cH-----HHHHHHH-HHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence            52     3456555 5777789999999999999998765554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=94.93  E-value=0.069  Score=51.34  Aligned_cols=109  Identities=19%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHH
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAV  206 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~  206 (249)
                      +.+...|++ .+++..-.|+..+.++....  |.   . ...+++.+.++|. +.++.++..|+++|..|++..|+....
T Consensus       145 ~~l~~~L~~-~~~~VRk~A~~al~~l~~~~--p~---~-v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          145 GEVEKLLKT-SNSYLRKKAALCAVHVIRKV--PE---L-MEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHS-CCHHHHHHHHHHHHHHHHHC--GG---G-GGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHHC--hH---H-HHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence            344445566 47777777777777766542  21   1 2368888888886 467999999999999999877764333


Q ss_pred             HhccHHHHHHHhhc--------------CCChhHHHHHHHHHHHhhhhchh
Q psy1198         207 VLDAVPTFLEKLQV--------------IQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       207 VVGAVPiL~~kLLs--------------i~yiDVAEQALwALenISgD~p~  243 (249)
                      +...||.|++.|.+              ++..-+.-..+.+|.++....|.
T Consensus       217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~  267 (618)
T 1w63_A          217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD  267 (618)
T ss_dssp             HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH
Confidence            44889999976654              23444555677778777766554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=94.87  E-value=0.065  Score=48.66  Aligned_cols=114  Identities=19%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      ..+..++.-|.+ .|+..++.+|.-|-|+|... +........+.++|.+|+++. +.|..+-+-|.|||-.|.++.|-.
T Consensus        33 ~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           33 RALFLILELAGE-DDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             hHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCC
Confidence            355556666666 59999999999999999874 222223456789999999995 457899999999999999998865


Q ss_pred             HHHHh-----------------------------------ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         204 SAVVL-----------------------------------DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       204 T~~VV-----------------------------------GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                      -...+                                   ..+-.+. .|+.+.+.+|..-++.+|=||+..+
T Consensus       110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~-sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYIN-ELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHH-HHHhCCChhHHHHHHHHHHHhhccc
Confidence            43332                                   1122233 4667777888888888888888755

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=94.40  E-value=0.19  Score=46.99  Aligned_cols=116  Identities=15%  Similarity=0.160  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      .+..+..+|++.|++ .+....-.+|..|.++++.+ .+-..+|+..+=+..|+++... -..+.|-.+-|||-+||+-.
T Consensus       115 sps~ra~~iiekL~~-~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v  191 (339)
T 3dad_A          115 QLSVRVNAILEKLYS-SSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFV  191 (339)
T ss_dssp             CHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSH
T ss_pred             CcHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhcc
Confidence            456789999999998 47888889999999999842 3333468877889999999865 36899999999999999932


Q ss_pred             chhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc
Q psy1198         201 PRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       201 p~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~  241 (249)
                       .-...||   .-|-.+.. |.++.+..|..+||..|+.+.--+
T Consensus       192 -~Gm~gvvs~~~fI~~lys-lv~s~~~~V~k~AL~LL~v~V~~s  233 (339)
T 3dad_A          192 -DGMLGVVAHSDTIQWLYT-LCASLSRLVVKTALKLLLVFVEYS  233 (339)
T ss_dssp             -HHHHHHHHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             -ccccchhCCHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHccC
Confidence             2333455   45666665 666788999999999999985443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.90  E-value=1.2  Score=39.50  Aligned_cols=107  Identities=7%  Similarity=0.111  Sum_probs=72.5

Q ss_pred             hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc
Q psy1198         120 EDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA  199 (249)
Q Consensus       120 s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg  199 (249)
                      ....+|+-+++...+...| ...++.|.+++|++... +|.   + -..|+|.++.|- .+.+.+++...+.-|..++.-
T Consensus        11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~-dp~---l-l~~~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~   83 (257)
T 3gs3_A           11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGS-CAE---L-AEEFLESVLSLA-HDSNMEVRKQVVAFVEQVCKV   83 (257)
T ss_dssp             HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTT-TGG---G-HHHHHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHcc-CHh---H-HHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHH
Confidence            3445667777776665445 58899999999987653 443   2 357899999975 345677766555555555533


Q ss_pred             CchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         200 LPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       200 tp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                         ....+.-+|+.|.. |++.++..|..+++.|.-+|
T Consensus        84 ---k~~l~~~~l~~L~~-Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           84 ---KVELLPHVINVVSM-LLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ---CGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence               33322377888885 67778899999999987664

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=91.44  E-value=0.32  Score=47.11  Aligned_cols=104  Identities=12%  Similarity=0.072  Sum_probs=74.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcC-CCCCccHHHHHHHHHHHHHhcCchhHHHHh
Q psy1198         130 LVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLS-MDHNFDMMNNACRALTYMMEALPRSSAVVL  208 (249)
Q Consensus       130 l~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs-~e~n~dLQ~eAArALTNIasgtp~qT~~VV  208 (249)
                      ...|++ .++..+-.||+-|+.+-.    |.   + ...++|.+.++|. .+.+|-+..-||-|+++|....|+.... -
T Consensus       117 ~kDl~~-~n~~ir~lALr~L~~i~~----~e---~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~  186 (621)
T 2vgl_A          117 KNDLAS-RNPTFMGLALHCIANVGS----RE---M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-G  186 (621)
T ss_dssp             HHHHHS-CCHHHHHHHHHHHHHHCC----HH---H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-C
T ss_pred             HHhcCC-CCHHHHHHHHHHhhccCC----HH---H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-h
Confidence            334555 355555556666665521    11   2 3467888888882 2457999999999999999988864421 1


Q ss_pred             ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      +.++.|.+ |++-++..|..-|+.+|..|..+.|..
T Consensus       187 ~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          187 DWTSRVVH-LLNDQHLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             SCHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHH-HhCCCCccHHHHHHHHHHHHHHhChHH
Confidence            67888886 667678899999999999999988864

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.93  E-value=0.23  Score=42.63  Aligned_cols=66  Identities=12%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             CccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----c-hhHHhhcC
Q psy1198         182 NFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR----H-SKAILQAF  249 (249)
Q Consensus       182 n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD----~-p~aIL~a~  249 (249)
                      +.++|.++.+||-.|+.-.+ -...|+   ..|..|+. .+.++.+.+.-++++.|--|+--    + -..||+||
T Consensus        67 ~~~~~~~~l~CLkalmn~~~-G~~~vl~~~~~i~~l~~-~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al  140 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNNKF-GIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM  140 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSSHH-HHHHHHTSSSHHHHHHT-TCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChH-HHHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Confidence            57889999999999986322 234444   78888885 77889999999998877665532    3 45677664

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=90.71  E-value=0.084  Score=48.93  Aligned_cols=75  Identities=11%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL  246 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL  246 (249)
                      ..+++.|..+|++ .++-+.|||+|+|++|-+..+   ..+.-++.+|. ++++++..++.=-+|..|-+|+..+|..+-
T Consensus       249 ~~~~~~l~~~L~~-~~~aVvyEa~k~I~~l~~~~~---~~~~~a~~~L~-~fLss~d~niryvaLr~L~~l~~~~P~~v~  323 (355)
T 3tjz_B          249 SPLFDFIESCLRN-KHEMVVYEAASAIVNLPGCSA---KELAPAVSVLQ-LFCSSPKAALRYAAVRTLNKVAMKHPSAVT  323 (355)
T ss_dssp             --------CCCCC-SSHHHHHHHHHHHTC--------------CCCTHH-HHHHSSSSSSHHHHHHCC------------
T ss_pred             HHHHHHHHHHHcC-CChHHHHHHHHHHHhccCCCH---HHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHCcHHHH
Confidence            4577778888874 578999999999999866222   22226666666 466667778888899999999998887764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.18  E-value=2.4  Score=41.61  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             cChHHHHHHhcCC--CCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         167 KQVVPALITLLSM--DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       167 ~glVP~LV~iLs~--e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ..++|.++.+|-.  ++++.+...+||+|..+++-+.+....+-..+|.|++.|.+   .+|++.|.++|.+|+.++++.
T Consensus       485 ~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~  561 (963)
T 2x19_B          485 SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYD  561 (963)
T ss_dssp             CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHH
Confidence            3567777766521  24688999999999999987665544333899999986633   789999999999999887765


Q ss_pred             H
Q psy1198         245 I  245 (249)
Q Consensus       245 I  245 (249)
                      +
T Consensus       562 l  562 (963)
T 2x19_B          562 L  562 (963)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.95  E-value=1.5  Score=41.21  Aligned_cols=106  Identities=11%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      ...+|+-++++..+...+ ..+++.|.+++|++... +|.   + -+.|+|.+++|-.. .+.+++...+-.|...+   
T Consensus        22 ~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d-~~~~vRk~~a~FieEa~---   91 (386)
T 3o2t_A           22 TTSERVVDLLNQAALITN-DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQAD-KSIEVRKFVIGFIEEAC---   91 (386)
T ss_dssp             CHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGC-SCHHHHHHHHHHHHHHH---
T ss_pred             cHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccC-CcHHHHHHHHHHHHHHH---
Confidence            445677777776554224 46899999999987653 444   2 36899999998764 35777654444444444   


Q ss_pred             chhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHh
Q psy1198         201 PRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEML  237 (249)
Q Consensus       201 p~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenI  237 (249)
                      ......+.-+|+.|.. |++.++..|..+++.|..+|
T Consensus        92 ~~~~el~~~~l~~L~~-LL~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A           92 KRDIELLLKLIANLNM-LLRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HHCGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            3344433478888885 77778899999999988776

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=89.36  E-value=1.3  Score=42.95  Aligned_cols=101  Identities=17%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhcc
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDA  210 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGA  210 (249)
                      .-|.+ .|+..++.+|..|.+++...  |..+ + ...+.+.++.+|+.++++.+...|...|+.|++  ++....|   
T Consensus       336 ~~L~~-~~~niry~aL~~l~~l~~~~--~~~~-~-~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I---  405 (621)
T 2vgl_A          336 QFLQH-RETNLRYLALESMCTLASSE--FSHE-A-VKTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI---  405 (621)
T ss_dssp             HHSSC-SCHHHHHHHHHHHHHHTTCT--TTHH-H-HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH---
T ss_pred             HHhcC-CCcchHHHHHHHHHHHHhcc--CcHH-H-HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH---
Confidence            33455 58999999999999988653  2111 1 356788899999845568899999999999975  4443433   


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         211 VPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       211 VPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      |..|.+-|.+ .+.++++.++.+++.++...|
T Consensus       406 v~eL~~yl~~-~d~~~~~~~v~~I~~la~k~~  436 (621)
T 2vgl_A          406 VAEMLSYLET-ADYSIREEIVLKVAILAEKYA  436 (621)
T ss_dssp             HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcC
Confidence            4444443333 467899999999999887654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.25  E-value=0.65  Score=43.06  Aligned_cols=120  Identities=12%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCC----------CCCccHHHHHHHHHHHH
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM----------DHNFDMMNNACRALTYM  196 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~----------e~n~dLQ~eAArALTNI  196 (249)
                      ...|..|++.-.....+..|..|+..|.-..-.=+..|... =+..|+++|..          +.+.++|.++.+||-.|
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~~~-Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAE-GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHHHc-cHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34566676632233345678888888855432333357533 45777777742          23458899999999999


Q ss_pred             HhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc-----hhHHhhcC
Q psy1198         197 MEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRH-----SKAILQAF  249 (249)
Q Consensus       197 asgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~-----p~aIL~a~  249 (249)
                      +.-.. -...|+   ..|..|+. ++.++++-+..+++..|--|.--.     -+.||+||
T Consensus       148 mN~~~-G~~~vl~~~~~i~~l~~-~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al  206 (383)
T 3eg5_B          148 MNNKF-GIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM  206 (383)
T ss_dssp             TSSHH-HHHHHHTCSSHHHHHHH-TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred             hcchh-hHHHHHcChHHHHHHHH-HhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHH
Confidence            86332 234444   88999996 788899999999999887765422     45577664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.13  E-value=2  Score=44.99  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch--hH-----------------HHHh----------ccHHHHHHHh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPR--SS-----------------AVVL----------DAVPTFLEKL  218 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~--qT-----------------~~VV----------GAVPiL~~kL  218 (249)
                      ..++.+++.|..+++|-+.+-|+.+|.--+-++..  ..                 .+|+          ..||.++++|
T Consensus       541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L  620 (963)
T 4ady_A          541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL  620 (963)
T ss_dssp             GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence            45667777776666677777776655321111111  00                 0111          2456666656


Q ss_pred             hcCCChhHHHHHHHHHHHhhhhch
Q psy1198         219 QVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       219 Lsi~yiDVAEQALwALenISgD~p  242 (249)
                      ++..+..|+--+.+||+.|+.-.|
T Consensus       621 ~~~~d~~VR~gAalALGli~aGn~  644 (963)
T 4ady_A          621 SKSHNAHVRCGTAFALGIACAGKG  644 (963)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             HhcCCHHHHHHHHHHHHHhccCCC
Confidence            666667777777777777654333

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=87.84  E-value=2.8  Score=35.48  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh---HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS---SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q---T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      ..++..++..|++ .||.++.++.-+|+++++-+...   ...++ ..++.+. ++++..+.+|++.|+.++.-|-+-
T Consensus       138 ~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~-k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          138 TQSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVP-QLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHH-HHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHHHH
Confidence            4567788888875 57999999999999998754322   12223 3444555 577888999999999998776543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=87.37  E-value=0.68  Score=45.83  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             ChHHHHHHhc---C-CCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         168 QVVPALITLL---S-MDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       168 glVP~LV~iL---s-~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..+|.++++|   . .+.+|.+...|||+|..+++-+.+....+-..+|.|++.| +   .+|++.|.+||.+|..++..
T Consensus       501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~  576 (971)
T 2x1g_F          501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQL  576 (971)
T ss_dssp             CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHH
Confidence            4555555444   2 2337899999999999999877654432337888888766 3   68999999999999998876


Q ss_pred             HHh
Q psy1198         244 AIL  246 (249)
Q Consensus       244 aIL  246 (249)
                      .+.
T Consensus       577 ~l~  579 (971)
T 2x1g_F          577 QLK  579 (971)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            643

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=86.74  E-value=1.7  Score=38.84  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHH-HhcCCCCCccHHHHHHHHHHHHHhcCchh--
Q psy1198         127 QQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI-TLLSMDHNFDMMNNACRALTYMMEALPRS--  203 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV-~iLs~e~n~dLQ~eAArALTNIasgtp~q--  203 (249)
                      +++...|.+. |...+++++..|.+.|+-..+..+..  .|-+++-+. .|  .+.|+.+..-+.-.|..+++.+.+.  
T Consensus        49 ~~~~~~lfs~-d~k~~~~ale~L~~~l~~~~~~~~~~--lDll~kw~~lr~--~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHK-DFKQHLAALDSLVRLADTSPRSLLSN--SDLLLKWCTLRF--FETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCS-CHHHHHHHHHHHHHHHHHCHHHHHHT--HHHHHHHHHHHT--TSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHH--HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3456677884 99999999999999886522111100  112233222 22  3568889888888888887665543  


Q ss_pred             --HHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         204 --SAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       204 --T~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                        +...+ -.||.|++||-+. ...|+|++-.+|-.|..-+|..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~  166 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL  166 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH
Confidence              22223 5689999999774 4778888888888887766655

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=85.52  E-value=1.2  Score=44.52  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCC-----CCCCC--CCC--ccChHHHHHHhcCCCC--Cc--cHHHHHHHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGN-----EDTLT--GFP--VKQVVPALITLLSMDH--NF--DMMNNACRA  192 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsn-----ep~I~--~fp--~~glVP~LV~iLs~e~--n~--dLQ~eAArA  192 (249)
                      ++.++..|.+ +++..+..|...|..++....     ++.+.  .+.  ...+++.|+++|+...  .+  +-...+..|
T Consensus       498 l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~a  576 (960)
T 1wa5_C          498 MPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS  576 (960)
T ss_dssp             HHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred             HHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHH
Confidence            3455667776 478888899999988876421     11111  111  2356666777776531  01  123467778


Q ss_pred             HHHHHhcCchhHHHHh-ccHHHHHHHhhc----CCChhHHHHHHHHHHHhhhh
Q psy1198         193 LTYMMEALPRSSAVVL-DAVPTFLEKLQV----IQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       193 LTNIasgtp~qT~~VV-GAVPiL~~kLLs----i~yiDVAEQALwALenISgD  240 (249)
                      |..+++..++...-.+ ..+|.|+++|..    .++.++...++.+|+.|.+-
T Consensus       577 l~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (960)
T 1wa5_C          577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (960)
T ss_dssp             HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            8888887776654444 666777665554    34667888899999998876

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=84.98  E-value=3.2  Score=35.71  Aligned_cols=111  Identities=10%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCch
Q psy1198         123 ATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       123 ~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~  202 (249)
                      ...++++|+...+..-...-.....++|+++....      ......+..|.+-|++ .||.+|+.|-..|-.++.--..
T Consensus         6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~------~~~k~a~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~   78 (226)
T 3zyq_A            6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD------TQAKYAVNSIKKKVND-KNPHVALYALEVMESVVKNCGQ   78 (226)
T ss_dssp             -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS------SCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCH
T ss_pred             CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcch
Confidence            35788899887653222334567789999987532      1235678888888874 6799999887766666665555


Q ss_pred             hHHHHh---ccHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhc
Q psy1198         203 SSAVVL---DAVPTFLEKLQ-VIQCMDVAEQSLTALEMLSRRH  241 (249)
Q Consensus       203 qT~~VV---GAVPiL~~kLL-si~yiDVAEQALwALenISgD~  241 (249)
                      ..+..|   .-+..|.. |+ .-...+|.|.+|..|..-+...
T Consensus        79 ~f~~eias~~fl~~l~~-l~~~~~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           79 TVHDEVANKQTMEELKD-LLKRQVEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             HHHHHHSSHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHh
Confidence            444444   33334443 33 3356889999998888766543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=84.97  E-value=0.57  Score=46.83  Aligned_cols=77  Identities=10%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC-------chh-HHHHhccHHHHHHHhhc---CC-----ChhHHHHH
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEAL-------PRS-SAVVLDAVPTFLEKLQV---IQ-----CMDVAEQS  230 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt-------p~q-T~~VVGAVPiL~~kLLs---i~-----yiDVAEQA  230 (249)
                      ..++|.+++.|.. +++.++..|||||.++++..       ++. ...+..-+|.++++|+.   ..     ..+..|.+
T Consensus       495 ~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l  573 (960)
T 1wa5_C          495 IELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL  573 (960)
T ss_dssp             HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred             HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence            3577888888874 46889999999999999852       221 22233444544444442   21     12255889


Q ss_pred             HHHHHHhhhhchhH
Q psy1198         231 LTALEMLSRRHSKA  244 (249)
Q Consensus       231 LwALenISgD~p~a  244 (249)
                      +.||+.|..-.+++
T Consensus       574 ~~al~~vv~~~~~~  587 (960)
T 1wa5_C          574 MRSIFRVLQTSEDS  587 (960)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99998876654443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=83.93  E-value=17  Score=35.62  Aligned_cols=104  Identities=16%  Similarity=0.051  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHh----c
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMME----A  199 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIas----g  199 (249)
                      ..+.++++.+....|+..+-+|-+.|.++-..           .+..+.+..+|....++++++.|+-.|.|...    .
T Consensus        24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~   92 (963)
T 2x19_B           24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD   92 (963)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence            45777777754335888777787777664321           25777888999877789999999999999875    4


Q ss_pred             CchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         200 LPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       200 tp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      +|+.....+  -.+..+++ ..+ ...-|..|...+|-.|+..
T Consensus        93 l~~~~~~~ir~~ll~~l~~-~~~-~~~~ir~kl~~~la~i~~~  133 (963)
T 2x19_B           93 IPTDQYESLKAQLFTQITR-FAS-GSKIVLTRLCVALASLALS  133 (963)
T ss_dssp             SCGGGHHHHHHHHHHHHHH-TTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH-HcC-CCHHHHHHHHHHHHHHHHH
Confidence            565555555  44444443 221 2356778888888777664

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=83.16  E-value=4.1  Score=36.69  Aligned_cols=77  Identities=13%  Similarity=0.086  Sum_probs=44.1

Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh----ccHHHHHHHhh----------------------cCCC
Q psy1198         170 VPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL----DAVPTFLEKLQ----------------------VIQC  223 (249)
Q Consensus       170 VP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV----GAVPiL~~kLL----------------------si~y  223 (249)
                      +..+..++..+.+|..|+.++|+|.|+++-..-. ..+.    -.++.+...+.                      +-..
T Consensus       149 ~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~-~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~  227 (304)
T 3ebb_A          149 SSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ-KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN  227 (304)
T ss_dssp             HHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH-HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH-HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence            3344455555556778999999999999854421 1111    22222222111                      1123


Q ss_pred             hhHHHHHHHHHHHhhhh--chhHHhh
Q psy1198         224 MDVAEQSLTALEMLSRR--HSKAILQ  247 (249)
Q Consensus       224 iDVAEQALwALenISgD--~p~aIL~  247 (249)
                      .|-++|++.+++.|..+  .++++.|
T Consensus       228 ~~~~~~ll~~l~~il~~~~d~EalyR  253 (304)
T 3ebb_A          228 IEGKAQCLSLISTILEVVQDLEATFR  253 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCCHHHHHH
Confidence            46778888888888764  4455554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=82.38  E-value=5  Score=42.02  Aligned_cols=107  Identities=14%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.+++.+-+. +...+-.|-..+--+....+ |    .-...++|.|++.|+....-+...-|..+|..|++-.|++..
T Consensus        97 ~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~-~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~  170 (986)
T 2iw3_A           97 VPAICTNAGNK-DKEIQSVASETLISIVNAVN-P----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA  170 (986)
T ss_dssp             HHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC-G----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             HHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC-H----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence            45566555543 44443333333333332221 1    223679999999997554567888999999999998899987


Q ss_pred             HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q psy1198         206 VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR  239 (249)
Q Consensus       206 ~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISg  239 (249)
                      .-+ ..||++.+.+.+ ...+|+.|+..+|.++..
T Consensus       171 ~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          171 LRMPELIPVLSETMWD-TKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             HHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGG
T ss_pred             HhccchhcchHhhccc-CcHHHHHHHHHHHHHHHh
Confidence            777 999999995555 568999999999999875

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=81.12  E-value=1.7  Score=43.89  Aligned_cols=64  Identities=5%  Similarity=-0.012  Sum_probs=48.8

Q ss_pred             CccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198         182 NFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL  246 (249)
Q Consensus       182 n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL  246 (249)
                      .|-++.-+||+|.-+++-+..+...+-.+++.|++.| ..+...|++.|.+||.+|+.++++.++
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l-~~~~~~V~~~A~~al~~l~~~~~~~l~  576 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFV  576 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556667899999887766555443338888888744 446789999999999999999887653

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=80.67  E-value=21  Score=31.78  Aligned_cols=139  Identities=12%  Similarity=0.051  Sum_probs=85.9

Q ss_pred             hHHHHhhCCCCCCCCCCcc---Ccc-chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHH
Q psy1198          97 LSGVASSSSGPSHAPGAAL---DSE-SEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPA  172 (249)
Q Consensus        97 ~q~Llkrr~l~~~~~gs~~---~~~-~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~  172 (249)
                      ...|+++.-.-.|-|.-..   +.. .+.....+..+...|..++-...++-|+.-|.++ .          +...++|.
T Consensus        39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----------~~~~~L~~  107 (240)
T 3l9t_A           39 VARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----------KDKEILIF  107 (240)
T ss_dssp             HHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----------TSHHHHHH
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----------CcHHHHHH
Confidence            3456666554455554221   111 1223456677888887643345566676644444 1          12457777


Q ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHh-cCchhHHHH---------------h--c----------------cHHHHHHHh
Q psy1198         173 LITLLSMDHNFDMMNNACRALTYMME-ALPRSSAVV---------------L--D----------------AVPTFLEKL  218 (249)
Q Consensus       173 LV~iLs~e~n~dLQ~eAArALTNIas-gtp~qT~~V---------------V--G----------------AVPiL~~kL  218 (249)
                      +...+..+++-.++..+|.++.+++. ..|+.+-.+               +  +                ++|+|- .|
T Consensus       108 ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~-~L  186 (240)
T 3l9t_A          108 MRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIA-DL  186 (240)
T ss_dssp             HHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHH-TT
T ss_pred             HHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHH-Hh
Confidence            77766667789999999999999996 667643211               1  2                355555 47


Q ss_pred             hcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         219 QVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       219 Lsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      ..-+..-|.--.=|+|-.||+++|.-|.+
T Consensus       187 ~~D~s~yVrKSVan~LrD~SK~~Pd~V~~  215 (240)
T 3l9t_A          187 KEDVSEYVRKSVGNALRDISKKFPDLVKI  215 (240)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence            77777778888889999999999987754

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=80.13  E-value=2.2  Score=39.52  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             CccHHHHHHHHHHHHHhcCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh----c-hhHHhhcC
Q psy1198         182 NFDMMNNACRALTYMMEALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR----H-SKAILQAF  249 (249)
Q Consensus       182 n~dLQ~eAArALTNIasgtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD----~-p~aIL~a~  249 (249)
                      +.++|.++.+||-.|+.-... ...|+   .+|..|+. .+..+++.++-+++..|.-|+--    + -..||+||
T Consensus        71 d~~~~~~~l~CLkalmN~~~G-l~~vl~~~~~i~~l~~-sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al  144 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM  144 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHH-HHHHHHSSSHHHHHHH-TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHH-HHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence            568899999999999874332 33344   78888885 77888899988888777655542    3 44576664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-13
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-04

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (163), Expect = 1e-13
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 116 DSESED-TATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALI 174
           D  S   T   + + +V      + + QLQA     ++L    +  +       ++P  +
Sbjct: 3   DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62

Query: 175 TLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLT 232
           + L       +   +  ALT +       +  V+   A+P F+  L       ++EQ++ 
Sbjct: 63  SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVW 121

Query: 233 ALEMLSRRHSK 243
           AL  ++   S 
Sbjct: 122 ALGNIAGDGSA 132

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 128 QLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMN 187
             LV + +  D   Q +A   +      G  + +       ++  L+ LLS      ++ 
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQ 375

Query: 188 NACRALTYMMEALPRSS----AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSR 239
               A++ + +A  +        ++      L+K++ +Q  +       +L ++ +
Sbjct: 376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (159), Expect = 4e-13
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 103 SSSGPSHAPGAALDSESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT 162
           + S        + D +      +    +       D  +QL A V+  Q+L   +   + 
Sbjct: 54  ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 113

Query: 163 GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLD--AVPTFLEKLQV 220
                 VVP L+  +  +    +   A  ALT +       + VV+D  AVP F++ L  
Sbjct: 114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY- 172

Query: 221 IQCMDVAEQSLTALEMLSRRH 241
              ++V EQ++ AL  ++   
Sbjct: 173 TGSVEVKEQAIWALGNVAGDS 193

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 125 KAQQLLVS--LQAIGDEDQQL-QAVVEMCQML--VMGNEDTLTGFPVKQVVPALITLLSM 179
            A   ++   L   GD +       +    +L  V G + T      K ++P ++ +   
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT-----TKHMLPTVLRMAG- 529

Query: 180 DHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238
           D   ++  N  ++L  +   L  S   +   V   LEKL   Q +DV   +  AL +LS
Sbjct: 530 DPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 5/123 (4%)

Query: 121 DTATKAQQLLVSLQAIGDEDQQLQ-AVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSM 179
           + AT+A   L  L  + DEDQ +      M   L              Q+V A++  +  
Sbjct: 13  ELATRAIPELTKL--LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 180 DHNFDMMNNACRALTYMMEALPRSSAVV-LDAVPTFLEKLQVIQCMDVAEQSLTALEMLS 238
            ++ +        L  +        A+     +P  ++ L       V   ++T L  L 
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLL 129

Query: 239 RRH 241
              
Sbjct: 130 LHQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.81
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.77
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.22
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.84
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.71
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.58
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.64
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.46
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.43
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.05
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.82
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.7
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.55
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.33
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.03
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.93
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.89
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.5
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.17
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.05
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.32
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.11
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.82
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.73
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.01
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	82.53

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=7.6e-21  Score=169.60  Aligned_cols=148  Identities=23%  Similarity=0.263  Sum_probs=120.7

Q ss_pred             cchhHHHHhhCCCCCCCCCCc--------c--C-ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCC
Q psy1198          94 TSLLSGVASSSSGPSHAPGAA--------L--D-SESEDTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLT  162 (249)
Q Consensus        94 ~~r~q~Llkrr~l~~~~~gs~--------~--~-~~~s~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~  162 (249)
                      .||+|.|.|||++.+......        .  . .........++++++.+++ +|+..|+.++..+|++|+..++|+++
T Consensus        35 ~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s-~~~~~~~~a~~~~r~~ls~~~~~~i~  113 (503)
T d1wa5b_          35 AKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPID  113 (503)
T ss_dssp             CCCCSCCSCCCCC----------------------------CCHHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHH
T ss_pred             HHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCCchHH
Confidence            478889999997542221110        0  0 1112334568999999999 69999999999999999999999999


Q ss_pred             CCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q psy1198         163 GFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRR  240 (249)
Q Consensus       163 ~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD  240 (249)
                      .+...+++|.||++|+.++++++|++|+|+|+||+++.++++..++  |++|.|++ ++.+++.++.|+|+|+|+||+.+
T Consensus       114 ~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~-lL~s~~~~i~~~a~~~L~nia~~  192 (503)
T d1wa5b_         114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGD  192 (503)
T ss_dssp             HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HHHHCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHH-HhcCCChhHHHHHHHHHHHHhhh
Confidence            8888999999999999888899999999999999999999998888  99999997 66678999999999999999998


Q ss_pred             chh
Q psy1198         241 HSK  243 (249)
Q Consensus       241 ~p~  243 (249)
                      ++.
T Consensus       193 ~~~  195 (503)
T d1wa5b_         193 STD  195 (503)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4e-19  Score=152.47  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcC
Q psy1198         121 DTATKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       121 ~~~~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgt  200 (249)
                      .....++++|..|++ +|+..|++|+..+|++++..++++++.+...|+||.||++|++.+++++|.+|||||.||++..
T Consensus        10 ~~~~~i~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_          10 TVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SSSCCHHHHHHHHTS-SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhhHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            444568999999999 5999999999999999999999888888788999999999988788999999999999999999


Q ss_pred             chhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         201 PRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       201 p~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ++.+..++  |+||.|++ ++..++.++.|+|+|+|.||+.+.+.
T Consensus        89 ~~~~~~i~~~~~i~~l~~-~L~~~~~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhhhHhhhccchhhhhh-ccccCCHHHHHHHHHHHHHHhccchH
Confidence            99998888  99999997 77889999999999999999988764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=103.26  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.|+..|+++.++..+..++..|+.+.... ++....|...+.+|.|+++|..+ +++++..++|+|.|++...|+...
T Consensus       103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (264)
T d1xqra1         103 LRKLLRLLDRDACDTVRVKALFAISCLVREQ-EAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKG  180 (264)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHhccc-hhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHH
Confidence            5677777876557888888888888876442 33333466789999999999864 699999999999999999999888


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHh
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAIL  246 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL  246 (249)
                      .++  |+||.|++ |+..++.++.|+|+|+|.+|+.++|..+-
T Consensus       181 ~~~~~~~v~~L~~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         181 TLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             HHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhhHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            888  99999997 77889999999999999999999887754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=100.41  Aligned_cols=114  Identities=15%  Similarity=0.073  Sum_probs=96.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.+|+.|++ +||..|..|...|.++- ..+++.-..+...|.||.||++|+. +++++|..|+|||.||+...++...
T Consensus         4 ip~lv~~L~~-~~~~~~~~a~~~l~~l~-~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           4 IPKAVQYLSS-QDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             HHHHHHHHHS-SCTHHHHHHHHHHHHHT-SSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7889999998 59999999998887765 4444444457778999999999975 5799999999999999988888777


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      .++  |+||.|++.|.+..+.++.+.++|+|.+++.+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~  119 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE  119 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh
Confidence            777  9999999866677889999999999999988653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-11  Score=99.24  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..||.||++|+.+ +|++|..|||+|.||+-..++....|+  |+||.|++ |+.+++.++.++|+|+|.||+.+.+.
T Consensus         2 ~~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~~~~   77 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CCHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred             CCHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            3589999999865 699999999999999999998888888  99999996 88889999999999999999977664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-09  Score=96.38  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCC-CCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTG-FPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~-fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      -++.|+.-|++ +|...+..|+.-++++-..+  +.... +...++||.|+++|++.++++++..|+++|.+|+. .++.
T Consensus        18 aip~L~~lL~~-~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          18 AIPELTKLLND-EDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             HHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            47889989998 59999999999998875432  11111 22347999999999988889999999999999986 5555


Q ss_pred             HHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         204 SAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       204 T~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ...++  |+||.|++ |+..++.++.+.|+|+|.||+.+.+.
T Consensus        94 ~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~aL~~l~~~~~~  134 (529)
T d1jdha_          94 LLAIFKSGGIPALVK-MLGSPVDSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHCCCHHHHHH-HhCCCCHHHHHHHHHHHHHhhcccch
Confidence            56666  99999996 77889999999999999999988764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.7e-09  Score=87.78  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh--ccHHHHH
Q psy1198         138 DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL--DAVPTFL  215 (249)
Q Consensus       138 D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV--GAVPiL~  215 (249)
                      |...+..|+..|.++...  .++-..|...|-+|.++..+-+..+++++..|||+|.||+..+|.....++  |+||.|+
T Consensus        30 ~~~~~~~Al~~L~~L~~~--~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          30 DQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            445566677777776632  222223555577888876444456799999999999999999998777777  9999999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         216 EKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       216 ~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      +.|.+.++.++.+.++|||.+|+++++..
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~  136 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAG  136 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhh
Confidence            85556678899999999999999988754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.7e-09  Score=93.55  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++..|+..+|+..+-.++..|+++ +. +++....|...+.||.||++|+. .++++|..|+|+|.||+...+....
T Consensus        61 v~~l~~~L~~~~~~~~~~~a~~~L~~l-~~-~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          61 VSAIVRTMQNTNDVETARCTAGTLHNL-SH-HREGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHH-TT-SHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHH-hC-CchhHHHHHHCCCHHHHHHHhCC-CCHHHHHHHHHHHHHhhcccchhhh
Confidence            566777776645788887888888775 32 23333345567999999999986 4689999999999999999888777


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      .+.  |+||.|++ |+..++.++.+.+.|+|.+++.+.+
T Consensus       138 ~~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_         138 AVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHHTHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCCchHHHH-HHHccChHHHHHHHHHHHHHhhhhh
Confidence            776  99999997 7788999999999999999987554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=8.5e-09  Score=87.39  Aligned_cols=115  Identities=10%  Similarity=0.090  Sum_probs=91.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.+++.+++ +++..+..++.-|+.+... ++.....+...++++.|+++|+. .+++++..|+|+|.|++...++...
T Consensus       232 ~~~Lv~ll~~-~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~  308 (434)
T d1q1sc_         232 VPQLVKLLGA-TELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQ  308 (434)
T ss_dssp             HHHHHHHHTC-SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chhccccccc-chhhhhhchhhhhhhHHhh-hhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHH
Confidence            4667777777 5888898999988876643 22222234457899999999985 4689999999999999998888888


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      .++  +.+|.|++ ++..+..++.+.|+|+|.|++.....+
T Consensus       309 ~i~~~~~i~~li~-~l~~~~~~v~~~a~~~l~nl~~~~~~~  348 (434)
T d1q1sc_         309 QVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVE  348 (434)
T ss_dssp             HHHHTTCHHHHHH-HHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHhhhhhHHHHHH-HHhccChHHHHHHHHHHHHHHhcCCHH
Confidence            777  99999997 666678999999999999999876544

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=5.4e-08  Score=85.62  Aligned_cols=114  Identities=12%  Similarity=0.134  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++..+++ +|+..+..++..|+.+.... ++.+..+...+++|.|+.+|..+ ++.++..|+++|.||+....+++.
T Consensus       248 l~~l~~~l~~-~d~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~~~  324 (503)
T d1wa5b_         248 LPTLAKLIYS-MDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQ  324 (503)
T ss_dssp             HHHHHHHTTC-CCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHhcc-ccHHHHHHHHHHHHhhccCC-chhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHHHH
Confidence            4556666777 58888777777777665432 22233345568999999999865 689999999999999999999998


Q ss_pred             HHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         206 VVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       206 ~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      .++  |++|.|.. |++.+..++.++++|+|.||+...+.
T Consensus       325 ~~~~~~~l~~l~~-ll~~~~~~i~~~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         325 VVINAGVLPALRL-LLSSPKENIKKEACWTISNITAGNTE  363 (503)
T ss_dssp             HHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhhccHH
Confidence            888  99999995 88888999999999999999875553

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.64  E-value=6.1e-05  Score=54.44  Aligned_cols=88  Identities=19%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .++.|+..|++ +|+..+..++..|.++            .....+|.|+++|++ +++.+...|+|+|-.|-+  +   
T Consensus        23 ~~~~L~~~l~d-~~~~vR~~a~~~L~~~------------~~~~~~~~L~~~l~d-~~~~VR~~a~~aL~~i~~--~---   83 (111)
T d1te4a_          23 AFEPLLESLSN-EDWRIRGAAAWIIGNF------------QDERAVEPLIKLLED-DSGFVRSGAARSLEQIGG--E---   83 (111)
T ss_dssp             THHHHHHGGGC-SCHHHHHHHHHHHGGG------------CSHHHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS--H---
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHhc------------chhhhHHHHHhhhcc-chhHHHHHHHHHHHHhCc--c---
Confidence            46778888887 5898888888776432            224689999999985 579999999999998742  2   


Q ss_pred             HHHhccHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy1198         205 AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEM  236 (249)
Q Consensus       205 ~~VVGAVPiL~~kLLsi~yiDVAEQALwALen  236 (249)
                          .++|.|.+ |++-++.+|++.|+.+|+.
T Consensus        84 ----~~~~~L~~-ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          84 ----RVRAAMEK-LAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             ----HHHHHHHH-HTTSCCTHHHHHHHHHGGG
T ss_pred             ----chHHHHHH-HHcCCCHHHHHHHHHHHHc
Confidence                46788875 7788899999999999873

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00023  Score=55.95  Aligned_cols=99  Identities=9%  Similarity=0.032  Sum_probs=74.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      .++|+..|++ +|+.....|+..|.++   .         ....+|.|+++|+. .+++++..|+++|.++.......- 
T Consensus        21 ~~~L~~~L~d-~~~~vR~~A~~~L~~~---~---------~~~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~~~~-   85 (276)
T d1oyza_          21 DDELFRLLDD-HNSLKRISSARVLQLR---G---------GQDAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCED-   85 (276)
T ss_dssp             HHHHHHHTTC-SSHHHHHHHHHHHHHH---C---------CHHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHhh---C---------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccccc-
Confidence            4677788887 6999988888888664   1         13578999999975 468999999999998854322211 


Q ss_pred             HHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         206 VVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       206 ~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                         ..++.|..++++.++.+|...++++|+++..+.+
T Consensus        86 ---~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~  119 (276)
T d1oyza_          86 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP  119 (276)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG
T ss_pred             ---chHHHHHHHHhcCCChhHHHHHHHHHHHHccccc
Confidence               3466777778888889999999999998876544

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.46  E-value=6.7e-05  Score=54.22  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             ChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhh
Q psy1198         168 QVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQ  247 (249)
Q Consensus       168 glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~  247 (249)
                      ..++.|++.|++ +++.+...|+|+|.++.+  +       .+||.|.+ ++..++.+|+..++|+|++|..+....+|.
T Consensus        22 ~~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~--~-------~~~~~L~~-~l~d~~~~VR~~a~~aL~~i~~~~~~~~L~   90 (111)
T d1te4a_          22 EAFEPLLESLSN-EDWRIRGAAAWIIGNFQD--E-------RAVEPLIK-LLEDDSGFVRSGAARSLEQIGGERVRAAME   90 (111)
T ss_dssp             TTHHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H-------HHHHHHHH-HHHHCCTHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCHHHHHHHHHHHHhcch--h-------hhHHHHHh-hhccchhHHHHHHHHHHHHhCccchHHHHH
Confidence            467889999985 569999999999987753  1       57899996 666789999999999999997665555443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00044  Score=65.59  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .+..|++.+++ .|++..+.|+..|.+.|.... ..++.-....+|+.|++.|+ +.|+++|..|++||.-|+.-.++..
T Consensus         4 ~~~~ll~k~~~-~D~d~R~ma~~dl~~~l~~~~-~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~~~   80 (1207)
T d1u6gc_           4 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQ   80 (1207)
T ss_dssp             HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hHHHHHHhcCC-CCHhHHHHHHHHHHHHHhhcc-cccChHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCcHhh
Confidence            47788999998 699999999999999996532 23343335679999999996 5689999999999999999887542


Q ss_pred             HHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         205 AVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       205 ~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                        +...++.||..|.+ +..++.+-+..+|..|...-|
T Consensus        81 --~~~l~~~L~~~l~~-~~~~~r~~~~~~L~~i~~~l~  115 (1207)
T d1u6gc_          81 --VETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELP  115 (1207)
T ss_dssp             --HHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHHhcc
Confidence              22778888875554 566777777778777765443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00067  Score=59.61  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhh-cCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhc--Cc
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLV-MGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEA--LP  201 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLS-msnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasg--tp  201 (249)
                      .+.-+++.|++ +|+...+.+++.|.++-. +..+.+     ...++|.|.++++.+  .+++..++..|.++.+-  -|
T Consensus        11 ~i~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~-----~~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_          11 PIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERT-----RSELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHH-----HHTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTSG
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhh-----HHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCCh
Confidence            46778889998 599999999988887633 332222     257899999998654  46778888888877652  23


Q ss_pred             hhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         202 RSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       202 ~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      +...   ..+|.|.+ |+..+...|+|+++.+|.+|....+..
T Consensus        83 ~~~~---~ll~~l~~-l~~~~~~~Vr~~a~~~l~~i~~~~~~~  121 (588)
T d1b3ua_          83 EYVH---CLLPPLES-LATVEETVVRDKAVESLRAISHEHSPS  121 (588)
T ss_dssp             GGGG---GGHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHH---HHHHHHHH-HccCCCHHHHHHHHHHHHHHHHhCCHH
Confidence            3222   55677764 778888889999999999998775543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00067  Score=63.41  Aligned_cols=108  Identities=13%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH-HHHh-
Q psy1198         131 VSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS-AVVL-  208 (249)
Q Consensus       131 ~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT-~~VV-  208 (249)
                      +.+++ +|...+-.|+..|..+..-.. +.+..+ ...++|.|+.+|+. .+|.++..|||||..+++..+... .... 
T Consensus       402 ~~l~s-~~~~~reaa~~alg~i~eg~~-~~~~~~-l~~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~  477 (888)
T d1qbkb_         402 ELLFH-HEWVVKESGILVLGAIAEGCM-QGMIPY-LPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLK  477 (888)
T ss_dssp             HTTTS-SSHHHHHHHHHHHHHHTTTSH-HHHTTT-HHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHHHHTT
T ss_pred             Hhhcc-chhHHHHHHHHHhhhhhhhHH-HHhccc-chhhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            44566 477666666666665432211 111112 24688999999974 569999999999999988655442 2344 


Q ss_pred             ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchh
Q psy1198         209 DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSK  243 (249)
Q Consensus       209 GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~  243 (249)
                      ..+|.+++++++ +...|+|.|+|||.++......
T Consensus       478 ~~l~~ll~~l~d-~~~~V~~~a~~al~~l~~~~~~  511 (888)
T d1qbkb_         478 PLMTELLKRILD-SNKRVQEAACSAFATLEEEACT  511 (888)
T ss_dssp             THHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhh
Confidence            889999986666 6689999999999999876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0037  Score=51.11  Aligned_cols=119  Identities=11%  Similarity=-0.001  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcCch
Q psy1198         125 KAQQLLVSLQAIG-DEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       125 rl~~Ll~~L~S~~-D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgtp~  202 (249)
                      -++.+++.+.+.. ++.....++.-+.++....... ........+++.+++.|..++ +.+++..|.+++.++.+..+.
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG-GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccch-hhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            4566666776532 2333334444444444332111 112234578999999997654 678999999999999987776


Q ss_pred             hHH--HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         203 SSA--VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       203 qT~--~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      ...  .+. -..+.|.+ ++..++.+++..++++|.+|....|+.+
T Consensus       207 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             hhhhHHHHHHhHhhHHH-HhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            542  222 55666665 7777899999999999999998887653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0019  Score=52.87  Aligned_cols=119  Identities=8%  Similarity=0.010  Sum_probs=80.0

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAI-GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~-~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++.++..+++. .+...+..++..++.++...............+.+.|..+++. +++++...++++|..|++..|...
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC-CCHHHHHHHHHHHHHHHHHhHHHH
Confidence            45556667652 2345667788888877754321111111122456667776664 579999999999999999999876


Q ss_pred             HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      .-.+ ..+..++......++.+++.++++.+..|+.......
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  293 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA  293 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444 5555555557778899999999999999987655443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0074  Score=46.91  Aligned_cols=107  Identities=9%  Similarity=-0.001  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchh
Q psy1198         124 TKAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRS  203 (249)
Q Consensus       124 ~rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~q  203 (249)
                      .-++.++..+++ .|+..+..|+..|.++-..   ..    ..+..++.+...+-+++++.+...|+++|.++....+..
T Consensus        50 ~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~---~~----~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~  121 (276)
T d1oyza_          50 DAVRLAIEFCSD-KNYIRRDIGAFILGQIKIC---KK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY  121 (276)
T ss_dssp             HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCC---TT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccc---cc----cccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh
Confidence            446777777887 5899998898888775211   11    123456667766666778999999999999998866543


Q ss_pred             HHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhch
Q psy1198         204 SAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       204 T~~VVGAVPiL~~kLLsi~yiDVAEQALwALenISgD~p  242 (249)
                      ..   ..++.|.. ++..++.+|...++++|.++.....
T Consensus       122 ~~---~~~~~l~~-~~~d~~~~vr~~a~~~l~~~~~~~~  156 (276)
T d1oyza_         122 SP---KIVEQSQI-TAFDKSTNVRRATAFAISVINDKAT  156 (276)
T ss_dssp             HH---HHHHHHHH-HTTCSCHHHHHHHHHHHHTC---CC
T ss_pred             hH---HHHHHHHH-HhcCcchHHHHHHHHHHhhcchHHH
Confidence            22   46677775 5566778888888888888765443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0023  Score=56.09  Aligned_cols=70  Identities=26%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             ccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHhccHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q psy1198         166 VKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVLDAVPTFLEKLQVIQCMDVAEQSLTALEMLS  238 (249)
Q Consensus       166 ~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VVGAVPiL~~kLLsi~yiDVAEQALwALenIS  238 (249)
                      ...++|.|+++++. ..|++++.|+|+|.+|..-.+.+.  +...|..++++|++-++.||++.|-+||+.|+
T Consensus       517 ~~~ilp~ll~~~~D-~v~nVR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         517 TKHMLPTVLRMAGD-PVANVRFNVAKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHTHHHHHHGGGC-SCHHHHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHcCcHh--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            35689999998874 468999999999999998877643  23444455557998899999999999999875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.028  Score=49.41  Aligned_cols=116  Identities=11%  Similarity=0.061  Sum_probs=72.6

Q ss_pred             HHHHHHHhcCCCHHHH---HHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcC-CCCCccHHHHHHHHHHHHHhcCch
Q psy1198         127 QQLLVSLQAIGDEDQQ---LQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLS-MDHNFDMMNNACRALTYMMEALPR  202 (249)
Q Consensus       127 ~~Ll~~L~S~~D~~~Q---LeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs-~e~n~dLQ~eAArALTNIasgtp~  202 (249)
                      +.|++.+++.+++..+   +.++..+|+.+....++.+..  ...+++.+++.+. .+.+.+++..|.+||.+++.-.+.
T Consensus       137 ~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~--~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~  214 (861)
T d2bpta1         137 KIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS--SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN  214 (861)
T ss_dssp             HHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhH
Confidence            4445555664344444   344555554332221111111  1245555555554 345688999999999999998876


Q ss_pred             hHH--HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         203 SSA--VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       203 qT~--~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      ...  .+. -.++.|++ ++..++.+++..++++|.+|....++.+
T Consensus       215 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~  259 (861)
T d2bpta1         215 NMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFM  259 (861)
T ss_dssp             HHTSHHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             hHHhhhhhhHHHHhHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            542  222 55667775 6677899999999999999998887653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0042  Score=58.68  Aligned_cols=113  Identities=12%  Similarity=0.199  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHH
Q psy1198         126 AQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSA  205 (249)
Q Consensus       126 l~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~  205 (249)
                      ++.++..+++ .++...-.|++.|+.++....++.     ...+++.+++.|..+++......+..||..|+...|....
T Consensus       174 l~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~~~-----~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  247 (1207)
T d1u6gc_         174 LTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG  247 (1207)
T ss_dssp             HHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhH
Confidence            4555566777 477777778888888776543322     2468999998887777777778899999999999887755


Q ss_pred             HHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         206 VVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       206 ~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      ..+ ..+|.+.+ .+..+..+++|-++++|+.+...+|+.+
T Consensus       248 ~~l~~i~~~l~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~  287 (1207)
T d1u6gc_         248 EYLEKIIPLVVK-FCNVDDDELREYCIQAFESFVRRCPKEV  287 (1207)
T ss_dssp             TSCTTHHHHHHH-HHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHH-HhcCccHHHHHHHHHHHHHHHHhChhhh
Confidence            555 88999986 6677889999999999999998888654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.017  Score=53.69  Aligned_cols=117  Identities=10%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCC-ccHHHHHHHHHHHHHhcCchhHHHH
Q psy1198         129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN-FDMMNNACRALTYMMEALPRSSAVV  207 (249)
Q Consensus       129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n-~dLQ~eAArALTNIasgtp~qT~~V  207 (249)
                      ++..|++ +++...-.++..+.++-....+ .+.-+ ...+++.|+++|++++. ..+.-.+|-||.-|+...|+...-.
T Consensus       711 l~~~L~~-~~~~v~~~a~~~ig~ia~~~~~-~~~py-~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~  787 (888)
T d1qbkb_         711 LGTNLNP-EFISVCNNATWAIGEISIQMGI-EMQPY-IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM  787 (888)
T ss_dssp             HHHTCCG-GGHHHHHHHHHHHHHHHHHTGG-GGGGG-SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHhCc-CCHHHHHHHHHHHHHHHHHHHH-Hhhhh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhh
Confidence            4455555 3555444444444443322221 12212 25799999999987653 3477779999999999999877655


Q ss_pred             h-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHHhhc
Q psy1198         208 L-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAILQA  248 (249)
Q Consensus       208 V-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aIL~a  248 (249)
                      + -.+|.+|..|..+.+.+-+|.+...|.++-..+|..++..
T Consensus       788 l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~  829 (888)
T d1qbkb_         788 LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD  829 (888)
T ss_dssp             GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHH
Confidence            6 7899999999998888889999999999999999888764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.028  Score=49.80  Aligned_cols=115  Identities=16%  Similarity=0.108  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCC-HHHH---HHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCC-CccHHHHHHHHHHHHHhcC
Q psy1198         126 AQQLLVSLQAIGD-EDQQ---LQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDH-NFDMMNNACRALTYMMEAL  200 (249)
Q Consensus       126 l~~Ll~~L~S~~D-~~~Q---LeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~-n~dLQ~eAArALTNIasgt  200 (249)
                      ++.|++.+.+.+. +...   +.++.++++.+..   +.+... ...++|.|++.|..++ +.+++..|..++.++.+..
T Consensus       130 i~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~---~~~~~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP---EQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH---HHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH---HHHHHH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence            4666667766322 3333   4555555553321   111111 3568999999987654 5788999999999999887


Q ss_pred             chhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhHH
Q psy1198         201 PRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKAI  245 (249)
Q Consensus       201 p~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~aI  245 (249)
                      +.......   -.++.+++ ++..++.++...++++|..|....++.+
T Consensus       206 ~~~~~~~~~~~~i~~~l~~-~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         206 KANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             hhhhhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            76543222   34455554 6677889999999999999998887653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.098  Score=46.17  Aligned_cols=118  Identities=8%  Similarity=0.012  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         126 AQQLLVSLQAI-GDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       126 l~~Ll~~L~S~-~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      ++.+++.+.+. .+...+..++..+...+..............-+++.+..+++. ++++++..+++||..+++..|+..
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHHHH
Confidence            34556666542 2345667777777776655321111101112355566666654 568999999999999999999887


Q ss_pred             HHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         205 AVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       205 ~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      ...+ ..+..++......++.+++.+++..+..|+.....-
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  293 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL  293 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            6655 444444444667788999999999888887655443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.067  Score=46.89  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=63.4

Q ss_pred             cChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhHHHHh-ccHHHHHHHhhcCCChhHHHHHHHHHHHhhhhchhH
Q psy1198         167 KQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSSAVVL-DAVPTFLEKLQVIQCMDVAEQSLTALEMLSRRHSKA  244 (249)
Q Consensus       167 ~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT~~VV-GAVPiL~~kLLsi~yiDVAEQALwALenISgD~p~a  244 (249)
                      +.+++.++++++..++..++..+..+|.+++...++...-.+ ..+|.|++.|.+ ...++...++.+|+.|+.-.+..
T Consensus       596 ~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~-~~~~v~~~a~~~l~~i~~~~~~~  673 (861)
T d2bpta1         596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEED  673 (861)
T ss_dssp             HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCC-CCHHHHHHHHHHHHHHHHHhHHH
Confidence            356777788887777788888999999999999998877777 889999975555 56789999999999998766544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.73  E-value=0.23  Score=43.10  Aligned_cols=118  Identities=12%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcC----------CCCCccHHHHHHHHHHHHHh
Q psy1198         129 LLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLS----------MDHNFDMMNNACRALTYMME  198 (249)
Q Consensus       129 Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs----------~e~n~dLQ~eAArALTNIas  198 (249)
                      .|..|++.-.....+..|..|+-.|.-..-.=+..|..+| +..|+++|.          .+.++++|+++-+||-.|+.
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G-~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHHhcc-HHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            3445554323333455566665555442211222353222 333445542          12346789999999999998


Q ss_pred             cCchhHHHHh---ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh-----hchhHHhhcC
Q psy1198         199 ALPRSSAVVL---DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR-----RHSKAILQAF  249 (249)
Q Consensus       199 gtp~qT~~VV---GAVPiL~~kLLsi~yiDVAEQALwALenISg-----D~p~aIL~a~  249 (249)
                      -.+ -...|+   ..|..|+. .+.++.+-+..+++..|-.++-     ++-..+|+||
T Consensus        86 ~~~-G~~~vl~~~~~i~~l~~-~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al  142 (343)
T d2bnxa1          86 NKF-GIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM  142 (343)
T ss_dssp             SHH-HHHHHHHSSSHHHHHHH-TCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred             cHH-HHHHHHcChHHHHHHHH-ccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence            433 334444   88999996 6677899999999999988763     3455666653

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.01  E-value=1.4  Score=33.45  Aligned_cols=110  Identities=8%  Similarity=0.048  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCchhH
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHNFDMMNNACRALTYMMEALPRSS  204 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n~dLQ~eAArALTNIasgtp~qT  204 (249)
                      .++++|+...+..-+..-.+...++|+++....  .    .....+..|.+-|++ .+|.+|+.|--.|=.++.-.....
T Consensus         5 ~~~~~iekAT~~~~~~~dw~~il~icD~I~~~~--~----~~k~a~ral~krl~~-~n~~v~l~aL~LLd~~vkNcG~~f   77 (145)
T d1dvpa1           5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--V----TPKNAFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPV   77 (145)
T ss_dssp             HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--S----CHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             hHHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCC--c----cHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHccchHH
Confidence            488888887664444455778899999996432  1    235677788888875 479999988887777777655555


Q ss_pred             HHHh---ccHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhch
Q psy1198         205 AVVL---DAVPTFLEKLQ-VIQCMDVAEQSLTALEMLSRRHS  242 (249)
Q Consensus       205 ~~VV---GAVPiL~~kLL-si~yiDVAEQALwALenISgD~p  242 (249)
                      +..|   .=+..|.. |. ..+...|.+.++..++.-+...+
T Consensus        78 ~~~i~s~~fl~~l~~-l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          78 HEEVFTKENCEMFSS-FLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHSSHHHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            5555   44444443 33 34578899999999999776654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=4.9  Score=35.92  Aligned_cols=103  Identities=10%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccChHHHHHHhcCCCCC-ccHHHHHHHHHHHHHh-----
Q psy1198         125 KAQQLLVSLQAIGDEDQQLQAVVEMCQMLVMGNEDTLTGFPVKQVVPALITLLSMDHN-FDMMNNACRALTYMME-----  198 (249)
Q Consensus       125 rl~~Ll~~L~S~~D~~~QLeAL~eLrelLSmsnep~I~~fp~~glVP~LV~iLs~e~n-~dLQ~eAArALTNIas-----  198 (249)
                      ++++|.+-|...-+|+.+-+|-++|.++- .  +|        +|+..|++++.+++. .++...|+=.|-|...     
T Consensus         3 d~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~--~p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~   71 (959)
T d1wa5c_           3 DLETVAKFLAESVIASTAKTSERNLRQLE-T--QD--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD   71 (959)
T ss_dssp             HHHHHHHHHHHTTSGGGHHHHHHHHHHHH-T--ST--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBC
T ss_pred             cHHHHHHHHHHCCChHHHHHHHHHHHHHH-c--CC--------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            45666666654457877778888887742 2  22        789999999987653 4678888888877775     


Q ss_pred             -----cCchhHHHHh--ccHHHHHHHhhcCCChhHHHHHHHHHHHhhh-hchh
Q psy1198         199 -----ALPRSSAVVL--DAVPTFLEKLQVIQCMDVAEQSLTALEMLSR-RHSK  243 (249)
Q Consensus       199 -----gtp~qT~~VV--GAVPiL~~kLLsi~yiDVAEQALwALenISg-D~p~  243 (249)
                           ..|++.+..|  ..++.|.    + +...++-|.-.++..|++ |.|.
T Consensus        72 ~~~~~~i~~e~k~~Ik~~ll~~l~----~-~~~~ir~~l~~~i~~I~~~d~p~  119 (959)
T d1wa5c_          72 ENGNHLLPANNVELIKKEIVPLMI----S-LPNNLQVQIGEAISSIADSDFPD  119 (959)
T ss_dssp             SSSCBSSCHHHHHHHHHHHHHHHH----H-SCHHHHHHHHHHHHHHHHHHSTT
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHh----C-CcHHHHHHHHHHHHHHHHHhCcc
Confidence                 2666666666  3333333    3 456788888888888886 5554