Psyllid ID: psy12000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADFILNR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHcHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcHEHEEHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEEEEEEHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcEEEccHHHHHHHHHHHHHcccccccccccccEEccc
Coil and Loop (DISEMBL)
mgnadsltdAWLGYCHFHLGQYKQALGIYETlrhlpnppedtefniASCYFYLGMYLQANQilekvppsraktrlsfhlshklgdeksLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAaenqlkpilvsilpplidvipesrLNLVIYHLKQEEHQEAFDLIknlepsvpqeYILKAVVQVTIGQDTGSREMVKAAQALFQLVgssqsecdtvpgrqcmassFFLLRSFKDVILYLSSIKsyytsddsfnFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLtkcspsraktrlsfhlshklgdeksLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAenqlkpilvsagprvrfppgadfilnr
Flexible Loop (DISEMBL)
MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLshklgdekSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENqlkpilvsagprvrfppgadfilnr
Low Complexity Region (SEG)
MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADFILNR
Disordered region (IsUnstruct)
******LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV**********F**************Y***LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP****TRLSFHL************YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF**********
Disordered Region (DISOPRED)
****DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS*G*RVRFPPGADFILNR
Disordered Region (DISEMBL)
MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADFILNR
Disordered Region (DISPRO)
****DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADFI***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADFILNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
A4III8	554	Tetratricopeptide repeat	yes	N/A	0.757	0.693	0.550	1e-131
Q8BS45	554	Tetratricopeptide repeat	yes	N/A	0.757	0.693	0.543	1e-126
Q5U2N8	554	Tetratricopeptide repeat	yes	N/A	0.757	0.693	0.543	1e-126
A0AVF1	554	Tetratricopeptide repeat	yes	N/A	0.757	0.693	0.541	1e-126
Q4R7Z9	554	Tetratricopeptide repeat	N/A	N/A	0.757	0.693	0.541	1e-126
Q5PR66	557	Tetratricopeptide repeat	yes	N/A	0.719	0.655	0.533	1e-120

>sp|A4III8|TTC26_XENTR Tetratricopeptide repeat protein 26 OS=Xenopus tropicalis GN=ttc26 PE=2 SV=1

 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 299/414 (72%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G ++  T+ W+GYC FHLG YK++L +++ L        D   N+A   F+LGMY +A+
Sbjct: 52  VGESEEDTELWIGYCSFHLGDYKRSLEVFKALSQQEGCNPDVWVNLACTSFFLGMYKEAD 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
           +   K P SR + RL FHL+HK  DEK LM +HQ L+D +E+QL LASIH++R HYQEAI
Sbjct: 112 EAANKAPKSRLQNRLLFHLAHKFNDEKRLMVFHQNLQDVIEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILL+++D LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLENRDFLALNVYVALCYYKLDYYDVSQEVLAVYLQQVPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPILVS---------------------------ILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++ S                           +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKGLMDSTSSPIEFAKELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEAF+LIK+LEPS PQEYILK VV  ++GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAFNLIKDLEPSTPQEYILKGVVNASLGQELGSRDHLKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLLR F DV++YL+SIKSY+ +DD+FNFN+AQAK A+G YKE
Sbjct: 352 SASECDTIPGRQCMASCFFLLRQFDDVLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
           AEE+FLL+QNE +KNDY Y+S L +C     K R+++ L  K+   G+  SL++
Sbjct: 412 AEEVFLLIQNEKIKNDYTYLSWLARCYIMNKKPRMAWELYLKMETSGESFSLLQ 465

Xenopus tropicalis (taxid: 8364)

>sp|Q8BS45|TTC26_MOUSE Tetratricopeptide repeat protein 26 OS=Mus musculus GN=Ttc26 PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEQEDDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E LKNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEVFLLIQSEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Mus musculus (taxid: 10090)

>sp|Q5U2N8|TTC26_RAT Tetratricopeptide repeat protein 26 OS=Rattus norvegicus GN=Ttc26 PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKEENCNPEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E LKNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEVFLLIQSEKLKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Rattus norvegicus (taxid: 10116)

>sp|A0AVF1|TTC26_HUMAN Tetratricopeptide repeat protein 26 OS=Homo sapiens GN=TTC26 PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 287/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K   SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  RAAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE FLL+Q+E +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Homo sapiens (taxid: 9606)

>sp|Q4R7Z9|TTC26_MACFA Tetratricopeptide repeat protein 26 OS=Macaca fascicularis GN=TTC26 PE=2 SV=1

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 287/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K   SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  RAAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE FLL+Q+E +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Macaca fascicularis (taxid: 9541)

>sp|Q5PR66|TTC26_DANRE Tetratricopeptide repeat protein 26 OS=Danio rerio GN=ttc26 PE=2 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/392 (53%), Positives = 277/392 (70%), Gaps = 27/392 (6%)

Query: 8   TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP 67
            D W G+C FH+G +K+A+  Y+ L   P+ P D    +    F+LG+Y +A +   K  
Sbjct: 62  ADLWTGFCAFHVGDHKRAMEEYKALTLRPDCPVDVWVYLGCALFFLGLYKEAEEAALKGS 121

Query: 68  PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL 127
            ++ + RL FHL+HK  DEK LM +HQ LED  E+QL LASIH++R HYQEAIDIYKRIL
Sbjct: 122 KTQLQNRLLFHLAHKFNDEKKLMGFHQNLEDVTEDQLSLASIHYMRSHYQEAIDIYKRIL 181

Query: 128 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187
           L +++ LALNVY A+CYYKLDYYDVSQE +A+YL   P S IALNLKACN ++L+  +AA
Sbjct: 182 LQNREFLALNVYVALCYYKLDYYDVSQEVLAVYLQSIPDSTIALNLKACNHFRLYNGKAA 241

Query: 188 ENQLKPIL---------------------------VSILPPLIDVIPESRLNLVIYHLKQ 220
           E +LK ++                           + +LPPLIDVI E+RLNLVIY+L+Q
Sbjct: 242 ETELKNLIDISSSSFQFAKELIQHNLVVFRGGGGALQVLPPLIDVISEARLNLVIYYLRQ 301

Query: 221 EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDT 280
           ++ QEA+ LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT
Sbjct: 302 DDIQEAYKLIKDLEPTTPQEYILKGVVNAALGQEIGSRDHLKIAQQFFQLVGGSASECDT 361

Query: 281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL 340
           +PGRQCMAS FFLL+ F+DV++YL+S+KSY+ +DD+F+FN+AQAK ALG Y+EAEE+FLL
Sbjct: 362 IPGRQCMASCFFLLKQFEDVLIYLNSVKSYFYNDDTFSFNYAQAKAALGNYREAEELFLL 421

Query: 341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372
           +QNE +K+DYV+ S L +C     K R ++ L
Sbjct: 422 IQNEKIKSDYVFQSWLARCYIMNQKPRQAWEL 453

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
156717722	554	tetratricopeptide repeat protein 26 [Xen	0.757	0.693	0.550	1e-129
260823860	556	hypothetical protein BRAFLDRAFT_60331 [B	0.755	0.688	0.547	1e-126
344297154	553	PREDICTED: tetratricopeptide repeat prot	0.757	0.694	0.548	1e-125
291411700	553	PREDICTED: tetratricopeptide repeat doma	0.741	0.679	0.550	1e-125
443696469	555	hypothetical protein CAPTEDRAFT_153891 [	0.753	0.688	0.555	1e-125
431911664	554	Tetratricopeptide repeat protein 26 [Pte	0.757	0.693	0.543	1e-125
334348542	553	PREDICTED: tetratricopeptide repeat prot	0.757	0.694	0.541	1e-125
194209945	554	PREDICTED: tetratricopeptide repeat prot	0.757	0.693	0.543	1e-125
348579574	553	PREDICTED: tetratricopeptide repeat prot	0.757	0.694	0.545	1e-124
395539489	554	PREDICTED: tetratricopeptide repeat prot	0.757	0.693	0.538	1e-124

>gi|156717722|ref|NP_001096401.1| tetratricopeptide repeat protein 26 [Xenopus (Silurana) tropicalis] gi|158513833|sp|A4III8.1|TTC26_XENTR RecName: Full=Tetratricopeptide repeat protein 26; Short=TPR repeat protein 26 gi|134025630|gb|AAI36036.1| ttc26 protein [Xenopus (Silurana) tropicalis]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 299/414 (72%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G ++  T+ W+GYC FHLG YK++L +++ L        D   N+A   F+LGMY +A+
Sbjct: 52  VGESEEDTELWIGYCSFHLGDYKRSLEVFKALSQQEGCNPDVWVNLACTSFFLGMYKEAD 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
           +   K P SR + RL FHL+HK  DEK LM +HQ L+D +E+QL LASIH++R HYQEAI
Sbjct: 112 EAANKAPKSRLQNRLLFHLAHKFNDEKRLMVFHQNLQDVIEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILL+++D LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLENRDFLALNVYVALCYYKLDYYDVSQEVLAVYLQQVPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPILVS---------------------------ILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++ S                           +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKGLMDSTSSPIEFAKELIKHNLVVFRAGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEAF+LIK+LEPS PQEYILK VV  ++GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAFNLIKDLEPSTPQEYILKGVVNASLGQELGSRDHLKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLLR F DV++YL+SIKSY+ +DD+FNFN+AQAK A+G YKE
Sbjct: 352 SASECDTIPGRQCMASCFFLLRQFDDVLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
           AEE+FLL+QNE +KNDY Y+S L +C     K R+++ L  K+   G+  SL++
Sbjct: 412 AEEVFLLIQNEKIKNDYTYLSWLARCYIMNKKPRMAWELYLKMETSGESFSLLQ 465

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823860|ref|XP_002606886.1| hypothetical protein BRAFLDRAFT_60331 [Branchiostoma floridae] gi|229292231|gb|EEN62896.1| hypothetical protein BRAFLDRAFT_60331 [Branchiostoma floridae]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/413 (54%), Positives = 292/413 (70%), Gaps = 30/413 (7%)

Query: 2   GNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQ 61
           G      D W+ YC FHLG+YK+A+  Y+++        D   N+A C F+LGMY +A++
Sbjct: 54  GKGSEEVDMWIAYCAFHLGEYKRAMEEYQSMTKRDGCHPDVWVNLACCDFFLGMYKEADE 113

Query: 62  ILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID 121
             +K P SR + RL FHLSHK  DEK LM+YHQ L+D +E+QL LASIH+LR HYQEAID
Sbjct: 114 AAQKSPKSRLQNRLLFHLSHKFNDEKRLMQYHQNLQDIIEDQLSLASIHYLRSHYQEAID 173

Query: 122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 181
           IYKRILLD++D LALNVY A+CYYKLDYYDVSQE +A+YL   P S IA+NLKACN ++L
Sbjct: 174 IYKRILLDNRDYLALNVYVALCYYKLDYYDVSQEVLAVYLQHYPDSAIAINLKACNHFRL 233

Query: 182 FTSRAAENQLKPI---------------------------LVSILPPLIDVIPESRLNLV 214
           +  +AAE +LK +                            + +LPPLIDVIPE+RLNLV
Sbjct: 234 YNGKAAEQELKTLQEMASPSFTFAKELIKHNLVVFRGGEGALQVLPPLIDVIPEARLNLV 293

Query: 215 IYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSS 274
           IY+L+Q++  EA++LIK+LEP+ PQEYILK VV   +GQ+TGSRE +K AQ  FQLVG S
Sbjct: 294 IYYLRQDDVSEAYNLIKDLEPTTPQEYILKGVVNAALGQETGSREHLKIAQQYFQLVGGS 353

Query: 275 QSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEA 334
            SECDT+PGRQCMAS FFLL+ F+DV++Y +SIKSY+ +DD+FNFN+ QAK A+G +KEA
Sbjct: 354 ASECDTIPGRQCMASCFFLLKQFEDVLIYFNSIKSYFYNDDTFNFNYTQAKAAVGNFKEA 413

Query: 335 EEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
           EE+ LLVQNE LKNDY Y+S L +      K RL++ L  K+   G+  SL++
Sbjct: 414 EEVALLVQNEKLKNDYTYLSWLARIYIMNNKARLAWELYLKMETSGESFSLLQ 466

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344297154|ref|XP_003420264.1| PREDICTED: tetratricopeptide repeat protein 26-like [Loxodonta africana]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  TD W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 51  VGEQEENTDLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAE 110

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 111 AAAFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 170

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 171 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 230

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 231 LYNGKAAEAELKSLMDNASSSFEFAKELIKHNLVVFRGGEGALQVLPPLVDVIPEARLNL 290

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 291 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 350

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 351 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 410

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E LKNDYVY+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 411 GEEVFLLIQSEKLKNDYVYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 464

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291411700|ref|XP_002722121.1| PREDICTED: tetratricopeptide repeat domain 26 [Oryctolagus cuniculus]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/403 (55%), Positives = 286/403 (70%), Gaps = 27/403 (6%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 51  VGEQEEDTNLWIGYCAFHLGDYKRALEEYENAAKAENCNPEVWVNLACTYFFLGMYKQAE 110

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
           +   K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 111 EAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 170

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 171 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 230

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +L+ ++                           + +LPPL+DVIPE+RLNL
Sbjct: 231 LYNGKAAEAELRSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 290

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LI++LEP+ PQEYILK VV V +GQ+TGSR+ +K AQ  FQLVG 
Sbjct: 291 VIYYLRQDDVQEAYNLIRDLEPTTPQEYILKGVVNVALGQETGSRDHMKIAQQFFQLVGG 350

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 351 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 410

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376
            EE+FLL+Q+E +KNDYVY+S L +C     K RL++ L  K+
Sbjct: 411 GEEVFLLIQSEKMKNDYVYLSWLARCYIMNKKPRLAWELYLKM 453

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443696469|gb|ELT97163.1| hypothetical protein CAPTEDRAFT_153891 [Capitella teleta]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/414 (55%), Positives = 293/414 (70%), Gaps = 32/414 (7%)

Query: 2   GNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPN-PPEDTEFNIASCYFYLGMYLQAN 60
           G ++  TD WL YC FHL +YK+A+  YE L       PE   F +  CYF LGMY +A+
Sbjct: 53  GTSNEETDMWLAYCAFHLSEYKKAMEEYERLTQRDGCHPEVYTF-LGCCYFLLGMYQEAD 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
            + EK P +    RL FHLSHK  DEK LM YHQ L D +E+QL LASIH+LR HYQEAI
Sbjct: 112 AVAEKGPKTSLSNRLLFHLSHKFNDEKRLMGYHQNLRDQIEDQLSLASIHYLRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD++D LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IA+NLKACN ++
Sbjct: 172 DIYKRILLDNRDYLALNVYVALCYYKLDYYDVSQEVLAVYLQQFPDSAIAINLKACNHFR 231

Query: 181 LFTSRAAENQLKPI---------------------------LVSILPPLIDVIPESRLNL 213
           L+  +AAE +LK +                            + +LPPLIDVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLQEMATPSFVFAKDLIKHNLVVFRGGEGALQVLPPLIDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+LKQ++  EA++LIK+LEP+ PQEYILK VV   +GQ+ GSRE +K AQ  FQLVG 
Sbjct: 292 VIYYLKQDDVAEAYNLIKDLEPTTPQEYILKGVVNAALGQEQGSREHLKIAQQYFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS F+LL+ F+DV++YL+SIKSY+ +DD+FNFN+AQAK  +G +KE
Sbjct: 352 SASECDTIPGRQCMASCFYLLKQFEDVLIYLNSIKSYFYNDDTFNFNYAQAKATVGNFKE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
           AEE+FLL+Q++ LKNDYVY+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 AEEVFLLIQSDKLKNDYVYLSWLARCYIMNRKPRLAWELYLKMETSGESFSLLQ 465

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|431911664|gb|ELK13812.1| Tetratricopeptide repeat protein 26 [Pteropus alecto]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEQEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+QNE +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEVFLLIQNEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334348542|ref|XP_001374721.2| PREDICTED: tetratricopeptide repeat protein 26-like [Monodelphis domestica]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 290/414 (70%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  D   D W+GYC FHLG YK+AL  YE++        +   N+A  YF+LGMY QA 
Sbjct: 51  VGEQDEDADLWIGYCAFHLGDYKRALEEYESVTKEEGCNPEVWVNLACTYFFLGMYKQAE 110

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 111 TAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 170

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 171 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 230

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 231 LYNGKAAEAELKSLMDNASSSFEFAKELIKHNLVVFRGGEGALQVLPPLVDVIPEARLNL 290

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ G R+ +K AQ  FQLVG 
Sbjct: 291 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGLRDHLKIAQQFFQLVGG 350

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLLR F DV++YL+S+KSY+ +DD+FNFN+AQAK A G   E
Sbjct: 351 SASECDTIPGRQCMASCFFLLRQFDDVLIYLNSVKSYFYNDDTFNFNYAQAKAATGNTSE 410

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 411 GEEVFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 464

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194209945|ref|XP_001496858.2| PREDICTED: tetratricopeptide repeat protein 26-like isoform 1 [Equus caballus] gi|338724425|ref|XP_003364937.1| PREDICTED: tetratricopeptide repeat protein 26-like isoform 2 [Equus caballus]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      N   +   N+A  YF+LGMY QA 
Sbjct: 52  VGEQEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSSFEFAKELIKHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ VK AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHVKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEVFLLIQSEKMKNDYIYLSWLARCYIINKKPRLAWELYLKMETSGESFSLLQ 465

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348579574|ref|XP_003475554.1| PREDICTED: tetratricopeptide repeat protein 26 isoform 1 [Cavia porcellus]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/414 (54%), Positives = 289/414 (69%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +  T+ W+GYC FHLG YK+AL  YE      +   +   N+A  YF+LGMY QA 
Sbjct: 51  VGEQEEDTNLWIGYCAFHLGDYKRALEEYENATKEESCNPEVWVNLACTYFFLGMYKQAE 110

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 111 AAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 170

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 171 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 230

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 231 LYNGKAAEAELKSLMDNAPSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNL 290

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG 
Sbjct: 291 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGG 350

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLL+ F DV++YL+S KSY+ +DD FNFN+AQAK A G   E
Sbjct: 351 SASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSE 410

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+QNE LKNDYVY+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 411 GEEVFLLIQNEKLKNDYVYLSWLARCHIMNKKPRLAWELYLKMETSGESFSLLQ 464

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395539489|ref|XP_003771701.1| PREDICTED: tetratricopeptide repeat protein 26 [Sarcophilus harrisii]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/414 (53%), Positives = 290/414 (70%), Gaps = 30/414 (7%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN 60
           +G  +   D W+GYC FHLG YK+AL  YE++        +   N+A  YF+LGMY QA 
Sbjct: 52  VGEQEEDADLWIGYCAFHLGDYKRALEEYESVTKEEGCNPEVWVNLACTYFFLGMYKQAE 111

Query: 61  QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI 120
               K P SR + RL FHL+HK  DEK LM +HQ L+D  E+QL LASIH++R HYQEAI
Sbjct: 112 TAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAI 171

Query: 121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           DIYKRILLD+++ LALNVY A+CYYKLDYYDVSQE +A+YL Q P S IALNLKACN ++
Sbjct: 172 DIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFR 231

Query: 181 LFTSRAAENQLKPIL---------------------------VSILPPLIDVIPESRLNL 213
           L+  +AAE +LK ++                           + +LPPL+DVIPE+RLNL
Sbjct: 232 LYNGKAAEAELKSLMDNASSSFEFAKELIKHNLVVFRGGEGALQVLPPLVDVIPEARLNL 291

Query: 214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS 273
           VIY+L+Q++ QEA++LIK+LEP+ PQEYILK VV   +GQ+ G R+ +K AQ  FQLVG 
Sbjct: 292 VIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGLRDHLKIAQQFFQLVGG 351

Query: 274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE 333
           S SECDT+PGRQCMAS FFLLR F DV++YL+S+KSY+ +DD+FNFN+AQAK A G   E
Sbjct: 352 SASECDTIPGRQCMASCFFLLRQFDDVLIYLNSVKSYFYNDDTFNFNYAQAKAATGNTAE 411

Query: 334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
            EE+FLL+Q+E +KNDY+Y+S L +C     K RL++ L  K+   G+  SL++
Sbjct: 412 GEEVFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
UNIPROTKB|A4III8	554	ttc26 "Tetratricopeptide repea	0.714	0.653	0.420	3.7e-64
RGD|1561363	554	Ttc26 "tetratricopeptide repea	0.706	0.646	0.400	5.5e-61
UNIPROTKB|Q5U2N8	554	Ttc26 "Tetratricopeptide repea	0.706	0.646	0.400	5.5e-61
UNIPROTKB|A0AVF1	554	TTC26 "Tetratricopeptide repea	0.708	0.648	0.399	5.5e-61
UNIPROTKB|Q4R7Z9	554	TTC26 "Tetratricopeptide repea	0.708	0.648	0.399	5.5e-61
MGI|MGI:2444853	554	Ttc26 "tetratricopeptide repea	0.706	0.646	0.400	5.5e-61
UNIPROTKB|F1SR18	553	TTC26 "Uncharacterized protein	0.706	0.647	0.400	7.1e-61
UNIPROTKB|E2QTM7	554	TTC26 "Uncharacterized protein	0.706	0.646	0.397	7.1e-61
UNIPROTKB|F1MF33	553	TTC26 "Uncharacterized protein	0.706	0.647	0.395	6.4e-60
UNIPROTKB|F1NK58	555	TTC26 "Uncharacterized protein	0.714	0.652	0.384	2.2e-59

UNIPROTKB|A4III8 ttc26 "Tetratricopeptide repeat protein 26" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 163/388 (42%), Positives = 230/388 (59%)

Query:     9 DAWLGY-C-HFHLGQYKQALGIYETLRHLPNPPEDTE--FNIASCYFYLGMYLQANQILE 64
             D W+   C  F LG YK+A    E     P         F++A  +      +  +Q L+
Sbjct:    92 DVWVNLACTSFFLGMYKEA---DEAANKAPKSRLQNRLLFHLAHKFNDEKRLMVFHQNLQ 148

Query:    65 KVPPSRAK-TRLSFHLSH--KLGD--EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 119
              V   +     + +  SH  +  D  ++ L+E    L  ++   LC   + +     QE 
Sbjct:   149 DVIEDQLSLASIHYMRSHYQEAIDIYKRILLENRDFLALNVYVALCYYKLDYYDVS-QEV 207

Query:   120 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179
             + +Y + + D    +ALN+  A  +++L Y   + E     L    +S I    K    +
Sbjct:   208 LAVYLQQVPD--STIALNLK-ACNHFRL-YNGKAAEAELKGLMDSTSSPIEF-AKELIKH 262

Query:   180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ 239
              L   RA E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEAF+LIK+LEPS PQ
Sbjct:   263 NLVVFRAGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAFNLIKDLEPSTPQ 317

Query:   240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKD 299
             EYILK VV  ++GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLLR F D
Sbjct:   318 EYILKGVVNASLGQELGSRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLRQFDD 377

Query:   300 VILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 359
             V++YL+SIKSY+ +DD+FNFN+AQAK A+G YKEAEE+FLL+QNE +KNDY Y+S L +C
Sbjct:   378 VLIYLNSIKSYFYNDDTFNFNYAQAKAAVGNYKEAEEVFLLIQNEKIKNDYTYLSWLARC 437

Query:   360 SPSRAKTRLSFHLSHKL---GDEKSLME 384
                  K R+++ L  K+   G+  SL++
Sbjct:   438 YIMNKKPRMAWELYLKMETSGESFSLLQ 465

GO:0072372 "primary cilium" evidence=ISS

RGD|1561363 Ttc26 "tetratricopeptide repeat domain 26" [Rattus norvegicus (taxid:10116)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 157/392 (40%), Positives = 228/392 (58%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    92 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 148

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              +   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   149 DIKEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 203

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   204 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSPFEF-AKE 258

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   259 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 313

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   314 TTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 373

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE+FLL+Q+E LKNDY+Y+S 
Sbjct:   374 QFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSW 433

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   434 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0005929 "cilium" evidence=ISO;IDA

GO:0036064 "cilium basal body" evidence=ISO

GO:0042384 "cilium assembly" evidence=IEA;ISO;ISS

GO:0072372 "primary cilium" evidence=IEA;ISO

UNIPROTKB|Q5U2N8 Ttc26 "Tetratricopeptide repeat protein 26" [Rattus norvegicus (taxid:10116)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 157/392 (40%), Positives = 228/392 (58%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    92 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 148

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              +   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   149 DIKEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 203

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   204 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSPFEF-AKE 258

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   259 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 313

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   314 TTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 373

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE+FLL+Q+E LKNDY+Y+S 
Sbjct:   374 QFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSW 433

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   434 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0072372 "primary cilium" evidence=IEA

UNIPROTKB|A0AVF1 TTC26 "Tetratricopeptide repeat protein 26" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 157/393 (39%), Positives = 229/393 (58%)

Query:     8 TDAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63
             ++ W+   C +F LG YKQA   G   +   L N      F++A  +      +  +Q L
Sbjct:    91 SEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNR---LLFHLAHKFNDEKKLMSFHQNL 147

Query:    64 EKVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------ 116
             + V   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y      
Sbjct:   148 QDVTEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYD 202

Query:   117 --QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 174
               QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K
Sbjct:   203 VSQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGRAAEAELKSLMDNASSSFEF-AK 257

Query:   175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE 234
                 + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LE
Sbjct:   258 ELIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLE 312

Query:   235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL 294
             P+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL
Sbjct:   313 PTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLL 372

Query:   295 RSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS 354
             + F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE FLL+Q+E +KNDY+Y+S
Sbjct:   373 KQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLS 432

Query:   355 HLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
              L +C     K RL++ L  K+   G+  SL++
Sbjct:   433 WLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0072372 "primary cilium" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

UNIPROTKB|Q4R7Z9 TTC26 "Tetratricopeptide repeat protein 26" [Macaca fascicularis (taxid:9541)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 157/393 (39%), Positives = 229/393 (58%)

Query:     8 TDAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63
             ++ W+   C +F LG YKQA   G   +   L N      F++A  +      +  +Q L
Sbjct:    91 SEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNR---LLFHLAHKFNDEKKLMSFHQNL 147

Query:    64 EKVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------ 116
             + V   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y      
Sbjct:   148 QDVTEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYD 202

Query:   117 --QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK 174
               QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K
Sbjct:   203 VSQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGRAAEAELKSLMDNASSSFEF-AK 257

Query:   175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE 234
                 + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LE
Sbjct:   258 ELIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLE 312

Query:   235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL 294
             P+ PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL
Sbjct:   313 PTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLL 372

Query:   295 RSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS 354
             + F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE FLL+Q+E +KNDY+Y+S
Sbjct:   373 KQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLS 432

Query:   355 HLTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
              L +C     K RL++ L  K+   G+  SL++
Sbjct:   433 WLARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0042384 "cilium assembly" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

MGI|MGI:2444853 Ttc26 "tetratricopeptide repeat domain 26" [Mus musculus (taxid:10090)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 157/392 (40%), Positives = 228/392 (58%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    92 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 148

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              +   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   149 DIKEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 203

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   204 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSPFEF-AKE 258

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   259 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 313

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   314 TTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 373

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE+FLL+Q+E LKNDY+Y+S 
Sbjct:   374 QFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSW 433

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   434 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=ISO;IDA

GO:0008594 "photoreceptor cell morphogenesis" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0036064 "cilium basal body" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISO;IMP

GO:0042995 "cell projection" evidence=IEA

GO:0046530 "photoreceptor cell differentiation" evidence=ISO

GO:0072372 "primary cilium" evidence=IDA

UNIPROTKB|F1SR18 TTC26 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 157/392 (40%), Positives = 228/392 (58%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    91 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 147

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              V   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   148 DVTEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 202

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   203 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSSFEF-AKE 257

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   258 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 312

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   313 TTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 372

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S K+Y+ +DD FNFN+AQAK A G   E EE+FLL+Q+E LKNDY+Y+S 
Sbjct:   373 QFDDVLIYLNSFKNYFYNDDIFNFNYAQAKAATGSTSEGEEIFLLIQSEKLKNDYIYLSW 432

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   433 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 464

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|E2QTM7 TTC26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 156/392 (39%), Positives = 228/392 (58%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    92 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 148

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              +   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   149 DITEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 203

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   204 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSSFEF-AKE 258

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   259 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 313

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+ GSR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   314 TTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 373

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE+FLL+Q+E +KNDY+Y+S 
Sbjct:   374 QFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKMKNDYIYLSW 433

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   434 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 465

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|F1MF33 TTC26 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 155/392 (39%), Positives = 227/392 (57%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             + W+   C +F LG YKQA   G       L N      F++A  +      +  +Q L+
Sbjct:    91 EVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNR---LLFHLAHKFNDEKKLMNFHQNLQ 147

Query:    65 KVPPSRAK-TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY------- 116
              +   +     + +  SH    ++++  Y + L D+  E L L +++   C+Y       
Sbjct:   148 DITEDQLSLASIHYMRSHY---QEAIDIYKRILLDN-REYLAL-NVYVALCYYKLDYYDV 202

Query:   117 -QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA 175
              QE + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K 
Sbjct:   203 SQEVLAVYLQQIPD--STIALNLK-ACNHFRL-YNGKAAEAELKSLMDNASSSFEF-AKE 257

Query:   176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP 235
                + L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP
Sbjct:   258 LIRHNLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEP 312

Query:   236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
             + PQEYILK VV   +GQ+  SR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLL+
Sbjct:   313 TTPQEYILKGVVNAALGQEMCSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLK 372

Query:   296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
              F DV++YL+S KSY+ +DD FNFN+AQAK A G   E EE+FLL+Q+E +KNDY+Y+S 
Sbjct:   373 QFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEVFLLIQSEKMKNDYIYLSW 432

Query:   356 LTKCSPSRAKTRLSFHLSHKL---GDEKSLME 384
             L +C     K RL++ L  K+   G+  SL++
Sbjct:   433 LARCYIMNKKPRLAWELYLKMETSGESFSLLQ 464

GO:0072372 "primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

UNIPROTKB|F1NK58 TTC26 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 149/388 (38%), Positives = 225/388 (57%)

Query:     9 DAWLGY-C-HFHLGQYKQA--LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
             D W+   C +F LG Y QA    +      L N      F++A  +      + ++Q L+
Sbjct:    93 DVWVNLACTYFFLGMYTQAEQAALKAPKSRLQNR---LLFHLAHKFSDEKKLMNSHQNLQ 149

Query:    65 KVPPSRAKTR----LSFHLSHKLGDEKS-LMEYHQKLEDSLEEQLCLASIHFLRCHYQEA 119
              +   +        +  H    +   K  L+E  + L  ++   LC   + +     QE 
Sbjct:   150 DITEDQLSLASIHYMRSHYQEAIDIYKCILLENREYLALNVYVALCYYKLDYYDVS-QEV 208

Query:   120 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY 179
             + +Y + + D    +ALN+  A  +++L Y   + E     L    +S      K    +
Sbjct:   209 LAVYLQQVPD--STIALNLK-ACNHFRL-YNGKAAEAELKNLTDSASSSFEFG-KELIKH 263

Query:   180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ 239
              L   R  E  L+     +LPPL+DVIPE+RLNLVIY+L+Q++ QEA++LIK+LEP+ PQ
Sbjct:   264 NLVVFRGGEGALQ-----VLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTAPQ 318

Query:   240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKD 299
             EYILK VV   +GQ+  SR+ +K AQ  FQLVG S SECDT+PGRQCMAS FFLLR F +
Sbjct:   319 EYILKGVVNAALGQEMDSRDHLKIAQQFFQLVGESASECDTIPGRQCMASCFFLLRQFAN 378

Query:   300 VILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC 359
             V++YL+S+KSY+ +DD+FNFN+AQAK ++G + EAEE+FLL+Q+E +KND+VY+S L +C
Sbjct:   379 VLIYLNSVKSYFYNDDTFNFNYAQAKASMGLFSEAEEVFLLIQSEKIKNDFVYLSWLARC 438

Query:   360 SPSRAKTRLSFHLSHKL---GDEKSLME 384
                  K +L++ L  K+   G+  +L++
Sbjct:   439 YIMNKKPQLAWKLYLKMETSGESFNLLQ 466

GO:0042384 "cilium assembly" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0AVF1	TTC26_HUMAN	No assigned EC number	0.5410	0.7573	0.6931	yes	N/A
Q5PR66	TTC26_DANRE	No assigned EC number	0.5331	0.7199	0.6552	yes	N/A
Q5U2N8	TTC26_RAT	No assigned EC number	0.5434	0.7573	0.6931	yes	N/A
A4III8	TTC26_XENTR	No assigned EC number	0.5507	0.7573	0.6931	yes	N/A
Q8BS45	TTC26_MOUSE	No assigned EC number	0.5434	0.7573	0.6931	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	507
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	5e-04

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV 66
           L  C+F  GQYK+A  +   L+   +      + +A C   LG Y +A  +LEK 
Sbjct: 27 LLAQCYFLQGQYKRAYELLRKLKLDNSS--GCRYLLAQCLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
KOG3785|consensus	557		100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG2002|consensus	1018		99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
KOG2002|consensus	1018		99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK14574	822	hmsH outer membrane protein; Provisional	99.94
KOG0547|consensus	606		99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG0548|consensus	539		99.91
KOG2003|consensus	840		99.91
KOG1173|consensus	611		99.9
KOG0547|consensus	606		99.9
KOG3785|consensus	557		99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
KOG1126|consensus	638		99.88
KOG2076|consensus	895		99.88
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
PLN03077	857	Protein ECB2; Provisional	99.87
KOG1126|consensus	638		99.86
KOG1155|consensus	559		99.85
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.85
KOG0624|consensus	504		99.84
KOG1174|consensus	564		99.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.83
KOG2076|consensus	895		99.83
PLN03077	857	Protein ECB2; Provisional	99.82
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.81
KOG1155|consensus	559		99.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.8
PRK12370	553	invasion protein regulator; Provisional	99.8
PLN03218	1060	maturation of RBCL 1; Provisional	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.79
KOG0495|consensus	913		99.78
KOG4340|consensus	459		99.77
PRK12370	553	invasion protein regulator; Provisional	99.77
KOG2003|consensus	840		99.76
KOG1173|consensus	611		99.75
KOG1840|consensus	508		99.74
KOG4162|consensus	799		99.74
KOG0624|consensus	504		99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.74
KOG0548|consensus	539		99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.72
PRK11189	296	lipoprotein NlpI; Provisional	99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
KOG0550|consensus	486		99.7
KOG2376|consensus	652		99.69
KOG4162|consensus	799		99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
PRK11189	296	lipoprotein NlpI; Provisional	99.68
KOG1174|consensus	564		99.68
KOG1125|consensus	579		99.68
KOG1129|consensus	478		99.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.68
KOG0495|consensus	913		99.68
KOG1127|consensus	1238		99.66
KOG1156|consensus	700		99.65
KOG0550|consensus	486		99.63
KOG1129|consensus	478		99.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.62
KOG1840|consensus	508		99.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.59
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.58
KOG1156|consensus	700		99.57
PLN02789	320	farnesyltranstransferase	99.56
KOG1125|consensus	579		99.55
KOG2376|consensus	652		99.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.49
PRK15359	144	type III secretion system chaperone protein SscB;	99.47
KOG1127|consensus	1238		99.45
PLN02789	320	farnesyltranstransferase	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.43
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
KOG1915|consensus	677		99.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.35
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
KOG4340|consensus	459		99.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.25
KOG1130|consensus	639		99.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.24
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.22
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.21
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.21
PRK04841	903	transcriptional regulator MalT; Provisional	99.19
KOG0553|consensus	304		99.18
KOG1128|consensus	777		99.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.17
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.16
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.13
KOG1130|consensus	639		99.12
KOG1915|consensus	677		99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.09
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.04
PRK04841	903	transcriptional regulator MalT; Provisional	99.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.01
KOG2047|consensus	835		99.0
KOG3060|consensus	289		99.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.96
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.96
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.95
KOG3060|consensus	289		98.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.94
KOG0553|consensus	304		98.93
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.91
KOG1128|consensus	777		98.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.89
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.87
KOG3081|consensus	299		98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.84
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.84
KOG3081|consensus	299		98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.78
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
KOG2047|consensus	835		98.77
PF13371	73	TPR_9: Tetratricopeptide repeat	98.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.73
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.71
PRK10803	263	tol-pal system protein YbgF; Provisional	98.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.67
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.65
KOG2053|consensus	932		98.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.63
PRK15331	165	chaperone protein SicA; Provisional	98.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.62
KOG0543|consensus	397		98.6
PF13512	142	TPR_18: Tetratricopeptide repeat	98.57
KOG0543|consensus	397		98.56
PRK15331	165	chaperone protein SicA; Provisional	98.54
PRK11906	458	transcriptional regulator; Provisional	98.53
KOG4234|consensus	271		98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.49
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.46
KOG1070|consensus	1710		98.46
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.45
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
KOG3616|consensus	1636		98.43
KOG1941|consensus	518		98.42
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.4
KOG3617|consensus	1416		98.3
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.29
KOG4234|consensus	271		98.29
KOG4648|consensus	536		98.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.27
KOG3617|consensus	1416		98.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.24
KOG1941|consensus	518		98.2
PRK11906	458	transcriptional regulator; Provisional	98.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.17
KOG3616|consensus	1636		98.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.1
KOG2796|consensus	366		98.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.05
PF13428	44	TPR_14: Tetratricopeptide repeat	98.02
KOG4648|consensus	536		98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
KOG2796|consensus	366		97.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.95
KOG4642|consensus	284		97.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.94
PF13431	34	TPR_17: Tetratricopeptide repeat	97.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.9
KOG2053|consensus	932		97.87
KOG0545|consensus	329		97.87
PF13431	34	TPR_17: Tetratricopeptide repeat	97.86
KOG4555|consensus	175		97.82
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.8
KOG4555|consensus	175		97.77
KOG1070|consensus	1710		97.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.66
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.66
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.65
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.62
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.55
KOG2471|consensus	696		97.54
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.52
KOG1914|consensus	656		97.46
KOG3364|consensus	149		97.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.43
KOG0545|consensus	329		97.42
KOG4642|consensus	284		97.41
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.38
KOG0551|consensus	390		97.38
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.37
KOG1586|consensus	288		97.33
KOG0376|consensus	476		97.33
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.23
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.21
KOG0376|consensus	476		97.2
KOG1585|consensus	308		97.2
KOG1586|consensus	288		97.19
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.15
KOG2300|consensus	629		97.15
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.12
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.07
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.06
KOG2610|consensus	491		97.06
KOG2610|consensus	491		97.01
KOG1585|consensus	308		96.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.78
KOG2471|consensus	696		96.78
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.72
PRK10941	269	hypothetical protein; Provisional	96.69
KOG0985|consensus	1666		96.67
KOG0551|consensus	390		96.65
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.65
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.59
KOG1308|consensus	377		96.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.55
KOG3364|consensus	149		96.52
KOG4507|consensus	886		96.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.37
PRK10941	269	hypothetical protein; Provisional	96.24
KOG1308|consensus	377		96.19
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.12
KOG1550|consensus	552		96.07
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.98
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.94
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.94
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.86
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.8
KOG1550|consensus	552		95.8
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.6
KOG1538|consensus	1081		95.51
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.45
KOG4814|consensus	872		95.44
KOG1538|consensus	1081		95.22
KOG2041|consensus	1189		95.11
KOG3824|consensus	472		94.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.94
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.91
KOG0985|consensus	1666		94.84
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.82
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.65
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.63
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.55
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.52
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.37
KOG0890|consensus	2382		94.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.16
KOG2041|consensus	1189		94.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.06
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.88
KOG1464|consensus	440		93.77
KOG3783|consensus	546		93.69
KOG1464|consensus	440		93.53
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.41
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.32
KOG2300|consensus	629		93.03
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.92
KOG4507|consensus	886		92.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.8
KOG2396|consensus	568		92.74
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.57
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.46
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.4
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.39
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.12
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.07
KOG3824|consensus	472		92.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.88
COG2912	269	Uncharacterized conserved protein [Function unknow	91.78
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.75
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.46
KOG4814|consensus	872		91.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.11
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.05
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.79
COG2912	269	Uncharacterized conserved protein [Function unknow	90.73
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.68
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.37
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.2
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.05
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.81
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.44
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.92
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.34
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.18
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.85
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.5
KOG1914|consensus	656		87.4
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.2
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.8
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.56
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	86.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.01
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.63
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	85.14
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.82
KOG1258|consensus	577		84.52
KOG2396|consensus	568		83.59
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.54
PRK11619	644	lytic murein transglycosylase; Provisional	83.25
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	83.24
COG5191	435	Uncharacterized conserved protein, contains HAT (H	81.83
KOG3783|consensus	546		81.77
KOG2581|consensus	493		80.82

>KOG3785|consensus

Probab=100.00  E-value=5.8e-51  Score=364.27  Aligned_cols=411  Identities=47%  Similarity=0.803  Sum_probs=381.0

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      ++++.+|+|+|++.+|||++|...|+-+...+..+.+++.++|.|++.+|.|.+|.....++++++...+++++++++++
T Consensus        56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            44899999999999999999999999998877777799999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      +++++.++.+.|++..++.+.||.+++..-.|++||++|++++..+|+...+..++|.||+++.-|+-+.+++.-.+...
T Consensus       136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~  215 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF  215 (557)
T ss_pred             cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHHH---------------------------hhCCCCCCChhHhHHHHHHHH
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPILV---------------------------SILPPLIDVIPESRLNLVIYH  217 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~  217 (507)
                      |+++.|.++++|.+++.-+...|+...+.+.+                           ++++.+..+.|++++||+..|
T Consensus       216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy  295 (557)
T KOG3785|consen  216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY  295 (557)
T ss_pred             CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence            99999999999999999888888877776532                           567777788999999999999


Q ss_pred             HhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCH
Q psy12000        218 LKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSF  297 (507)
Q Consensus       218 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  297 (507)
                      +++++.++|+.+++.++|..|.+++++|.+...+|+.....++++.|+++|+.++++..++|++++|+.+|.+++...+|
T Consensus       296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF  375 (557)
T KOG3785|consen  296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF  375 (557)
T ss_pred             cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000        298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG  377 (507)
Q Consensus       298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  377 (507)
                      ++.+.|++++.+...+++.+++|++.++...|.|.+|.+.|-++..++..+...|..||++||..+++++.||.++.+..
T Consensus       376 ddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~  455 (557)
T KOG3785|consen  376 DDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN  455 (557)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc
Q psy12000        378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD  425 (507)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~  425 (507)
                      ...+.+.+++.++.          .-|..+.|==|-+.|..+...+|.
T Consensus       456 t~~e~fsLLqlIAn----------~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  456 TPSERFSLLQLIAN----------DCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             CchhHHHHHHHHHH----------HHHHHHHHHHHHHhhhHHHccCCC
Confidence            98888887776663          334445555555666666555543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=9.4e-34  Score=312.45  Aligned_cols=471  Identities=15%  Similarity=0.104  Sum_probs=331.1

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHH---HHHhc
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFH---LSHKL   83 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~---~~~~~   83 (507)
                      +...+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++....+.. .....   .....
T Consensus       365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  444 (899)
T TIGR02917       365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS  444 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence            344466666667777777777777766666666666667777777777777776666654322211 11111   12223


Q ss_pred             CChhHHHHHHHHH-hh---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000         84 GDEKSLMEYHQKL-ED---SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  159 (507)
Q Consensus        84 ~~~~~~~~~~~~l-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  159 (507)
                      ++.+.+......+ ..   .+..+..+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|++.+++
T Consensus       445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  524 (899)
T TIGR02917       445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK  524 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3333333322222 22   2334778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCC
Q psy12000        160 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPS  236 (507)
Q Consensus       160 ~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~  236 (507)
                      ++..+|++..++..++.++...|+.++|...++++..     ..|.....+..++.+|...|++++|+..++++   .|.
T Consensus       525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  599 (899)
T TIGR02917       525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-----LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD  599 (899)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            9999999988888888888888999999888887642     23444566777888888888888888887765   355


Q ss_pred             ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch
Q psy12000        237 VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS  316 (507)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~  316 (507)
                      ++..+...+.++...|+.       ++|+..|+.+...  .++...++..+|.++...|++++|+.+++++....|++..
T Consensus       600 ~~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  670 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDL-------NKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE  670 (899)
T ss_pred             CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence            555566666666665544       3444444332211  1223344556788888888888888888888777777777


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHc--------------------
Q psy12000        317 FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL--------------------  376 (507)
Q Consensus       317 ~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------------  376 (507)
                      +++.++.++...|++++|+..++.+....+.+...+ ..++.++...|+++.|...+.+.                    
T Consensus       671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  749 (899)
T TIGR02917       671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF-ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS  749 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC
Confidence            777778888888888888888877765444333222 23566666777777776655432                    


Q ss_pred             CCcHHHHHHHHHhhh-c---HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000        377 GDEKSLMEYHQKLED-S---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  452 (507)
Q Consensus       377 ~~~~~~~~~~~~l~~-~---~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  452 (507)
                      ++..++...+..+.. .   +.....++.++...|++++|+..|+++++..|+++.++..+|+++.+.|+ .+|++.+++
T Consensus       750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~  828 (899)
T TIGR02917       750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK  828 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence            222222222222211 1   22234566777778899999999999999999998888889999999998 889999999


Q ss_pred             HHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        453 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       453 ~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +++..|+++..+..++.+++.+++.+.|...|++.++..|.+
T Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA  870 (899)
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999899999999889999999999999998875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.6e-34  Score=313.19  Aligned_cols=482  Identities=17%  Similarity=0.085  Sum_probs=309.8

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHH--
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSH--   81 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~--   81 (507)
                      ..+..+..|..++..|++++|+..|+++++.+|+++++++.+|.++...|++++|+..++++....+.. .....++.  
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  100 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY  100 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence            445677789999999999999999999999999999999999999999999999999999886543322 23333333  


Q ss_pred             -hcCChhHHHHHHHHHh--hc---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000         82 -KLGDEKSLMEYHQKLE--DS---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus        82 -~~~~~~~~~~~~~~l~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  155 (507)
                       ..+..+.+........  ..   ...+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|++
T Consensus       101 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~  180 (899)
T TIGR02917       101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA  180 (899)
T ss_pred             HHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence             3333333333222211  11   12377889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--
Q psy12000        156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--  233 (507)
Q Consensus       156 ~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--  233 (507)
                      .+++++..+|.+..++..++.+++..|+++.|...++.++.     ..|..+.++..++.++...|++++|...+..+  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  255 (899)
T TIGR02917       181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA-----LRPNNPAVLLALATILIEAGEFEEAEKHADALLK  255 (899)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999998888889999999999999988887642     34556677888888888888888888777654  


Q ss_pred             -CCCChHHHHHHHHHHHHhhhccCcHHHHHHH---------------------------HHHHHHhCCCcccccchhhhh
Q psy12000        234 -EPSVPQEYILKAVVQVTIGQDTGSREMVKAA---------------------------QALFQLVGSSQSECDTVPGRQ  285 (507)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A---------------------------~~~~~~~~~~~~~~~~~~~~~  285 (507)
                       .|.++......+.++...|+...+...++++                           +..++.+...  .|+...++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~  333 (899)
T TIGR02917       256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARR  333 (899)
T ss_pred             hCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence             4555555555666665555433332222222                           2222211110  111122233


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .++.++...|++++|+..++.+....|.++.++..+|.++...|++++|+..|++++...+.+...+. .++.++...++
T Consensus       334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  412 (899)
T TIGR02917       334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAART-QLGISKLSQGD  412 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHhCCC
Confidence            34555555555555555555554444444444555555555556666666665555544333222221 23444444555


Q ss_pred             hhHHHHHHHHc---------------------CCcHHHHHHHHHhhhc----HHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000        366 TRLSFHLSHKL---------------------GDEKSLMEYHQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRIL  420 (507)
Q Consensus       366 ~~~A~~~~~~~---------------------~~~~~~~~~~~~l~~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l  420 (507)
                      ++.|...+.+.                     ++.+++......+...    +.....++.++...|++++|+..|++++
T Consensus       413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  492 (899)
T TIGR02917       413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL  492 (899)
T ss_pred             hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            55444433221                     1111222222221111    1122334555555666777777777776


Q ss_pred             hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +.+|+++.....+|.++...|++++|+..++++++.+|++..+++.++.++...++.+.+...|++.++..|.+
T Consensus       493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  566 (899)
T TIGR02917       493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE  566 (899)
T ss_pred             hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            66666666666666667777777777777777777777766666666666666666666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626|consensus

Probab=100.00  E-value=2.5e-35  Score=281.12  Aligned_cols=377  Identities=15%  Similarity=0.048  Sum_probs=295.4

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHHHHHHh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSFHLSHK   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~~~   82 (507)
                      +++-.+|+++-..|+++.|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+....+..-    -+.++...
T Consensus       117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka  196 (966)
T KOG4626|consen  117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA  196 (966)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence            45566888888999999999999999999999999999999999999999999999888765444221    12222233


Q ss_pred             cCCh-hHHHHHHHHHhhcHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         83 LGDE-KSLMEYHQKLEDSLEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        83 ~~~~-~~~~~~~~~l~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      .|.. ++...|.+.+...|.-   +.+||.++..+|+.-.||..|++++.++|.+.++|++||.+|-.++.|+.|+..|.
T Consensus       197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~  276 (966)
T KOG4626|consen  197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL  276 (966)
T ss_pred             hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence            3332 3334455556544432   67888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000        159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP  238 (507)
Q Consensus       159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~  238 (507)
                      +++...|++..++-.+|++++.+|..+-|+..+++.+     ...|..++++-|||..+-..|+.++|.+.+.+.....|
T Consensus       277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-----~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p  351 (966)
T KOG4626|consen  277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-----ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP  351 (966)
T ss_pred             HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH-----hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence            8888888888888778888888888888888887664     45677778888888888888888888777754321111


Q ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000        239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN  318 (507)
Q Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~  318 (507)
                      .                                        ...+...||.+|..+|.+++|..+|+++.+..|....++
T Consensus       352 ~----------------------------------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~  391 (966)
T KOG4626|consen  352 N----------------------------------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH  391 (966)
T ss_pred             c----------------------------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh
Confidence            1                                        111234689999999999999999999999999988899


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHH
Q psy12000        319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC  398 (507)
Q Consensus       319 ~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  398 (507)
                      .|||.+|-++|++++|+.+|+.++...|.-...+                                            ..
T Consensus       392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~--------------------------------------------~N  427 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL--------------------------------------------SN  427 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH--------------------------------------------Hh
Confidence            9999999999999999999999987765321111                                            12


Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh-hHHHhhhh
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL-NLKACNTY  472 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~-~~~~~~~~  472 (507)
                      +|.++-..|+...|+..|.+++..+|...+++.+||.+|.-.|+..+|+..|++++++.||.|.|. |++-+..+
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence            344566678999999999999999999999999999999999999999999999999999999885 33334333

>KOG4626|consensus

Probab=100.00  E-value=1.7e-34  Score=275.44  Aligned_cols=436  Identities=14%  Similarity=-0.014  Sum_probs=339.6

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+.+++..|+-|||++|.+....+-..+|.+.+....++.++++..+++.....-..+....+                
T Consensus        50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~----------------  113 (966)
T KOG4626|consen   50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP----------------  113 (966)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccc----------------
Confidence            3556777777777777777777777777777777777777777777666665543222211100                


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                                ...+.+.++|.++...|++++|+..|+.+++..|++.+++.++|.++...|+.+.|...|..+++.+|+.
T Consensus       114 ----------q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l  183 (966)
T KOG4626|consen  114 ----------QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL  183 (966)
T ss_pred             ----------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch
Confidence                      1123366799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHH
Q psy12000        168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILK  244 (507)
Q Consensus       168 ~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~  244 (507)
                      ..+....+.++-.+|+..+|...+.+++.     ..|...-+|.+||.++..+|+...|+..+.+   ++|..+++++..
T Consensus       184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~-----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL  258 (966)
T KOG4626|consen  184 YCARSDLGNLLKAEGRLEEAKACYLKAIE-----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL  258 (966)
T ss_pred             hhhhcchhHHHHhhcccchhHHHHHHHHh-----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence            88777777777778888888887777642     4456667899999999999999999998875   477778888888


Q ss_pred             HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000        245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA  324 (507)
Q Consensus       245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~  324 (507)
                      |.++...+....+...|.+|..      .   .|....+.-.+|.+|+.+|..+-||..|+++++..|+.+.++.|+|.+
T Consensus       259 GnV~ke~~~~d~Avs~Y~rAl~------l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA  329 (966)
T KOG4626|consen  259 GNVYKEARIFDRAVSCYLRALN------L---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA  329 (966)
T ss_pred             HHHHHHHhcchHHHHHHHHHHh------c---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence            8887776665555555555432      1   223333444688899999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH
Q psy12000        325 KCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF  404 (507)
Q Consensus       325 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  404 (507)
                      +-..|+..+|..+|.+++...+..... +..||..+--.++.+.|..+|.+.....         .+.....-.++.++.
T Consensus       330 Lkd~G~V~ea~~cYnkaL~l~p~hada-m~NLgni~~E~~~~e~A~~ly~~al~v~---------p~~aaa~nNLa~i~k  399 (966)
T KOG4626|consen  330 LKDKGSVTEAVDCYNKALRLCPNHADA-MNNLGNIYREQGKIEEATRLYLKALEVF---------PEFAAAHNNLASIYK  399 (966)
T ss_pred             HHhccchHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhccchHHHHHHHHHHhhC---------hhhhhhhhhHHHHHH
Confidence            999999999999999997554322111 1225555555666677766665532211         011112245677888


Q ss_pred             hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHH
Q psy12000        405 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL  484 (507)
Q Consensus       405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~  484 (507)
                      ++|++++|+..|+.++.+.|...+.++++|..|-.+|+.+.|+.+|.++|+++|..++|.+.+++++---++-..|+.-|
T Consensus       400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998878888888889


Q ss_pred             HHHHHhCCC
Q psy12000        485 KPILVSAGP  493 (507)
Q Consensus       485 ~~~~~~~~~  493 (507)
                      +.-+-..|.
T Consensus       480 ~~aLklkPD  488 (966)
T KOG4626|consen  480 RTALKLKPD  488 (966)
T ss_pred             HHHHccCCC
Confidence            988888774

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.3e-32  Score=301.66  Aligned_cols=463  Identities=14%  Similarity=0.022  Sum_probs=342.9

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHHHHHh-----------
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFHLSHK-----------   82 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~~-----------   82 (507)
                      ..|++++|++.|+++++.+|.++.++..+|.+++..|++++|+..++++...+...    ..++.....           
T Consensus       159 ~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l  238 (1157)
T PRK11447        159 LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL  238 (1157)
T ss_pred             CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence            45888899999999999999999999999999999999999999998875432211    011111000           


Q ss_pred             ------cCChhHHHHHHHHHhh------cHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000         83 ------LGDEKSLMEYHQKLED------SLEE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY  149 (507)
Q Consensus        83 ------~~~~~~~~~~~~~l~~------~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  149 (507)
                            +........+...+..      .|.. ...+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|+
T Consensus       239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~  318 (1157)
T PRK11447        239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD  318 (1157)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                  1011111111122211      1111 23568899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHH--------------HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHH
Q psy12000        150 YDVSQEQVAMYLAQKPTSRIA--------------LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVI  215 (507)
Q Consensus       150 ~~~A~~~~~~~l~~~p~~~~a--------------~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~  215 (507)
                      +++|+..|+++++.+|++...              ....+.++...|++++|+..+++++.     ..|..+.++..+|.
T Consensus       319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~-----~~P~~~~a~~~Lg~  393 (1157)
T PRK11447        319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ-----VDNTDSYAVLGLGD  393 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence            999999999999999987531              12235667788999999999998753     35666788999999


Q ss_pred             HHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccc-cc------chhhhh
Q psy12000        216 YHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSE-CD------TVPGRQ  285 (507)
Q Consensus       216 ~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~------~~~~~~  285 (507)
                      ++..+|++++|+..++++   .|.++..+...+.++..        ...++|+.+++.+...... ..      ......
T Consensus       394 ~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~  465 (1157)
T PRK11447        394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------QSPEKALAFIASLSASQRRSIDDIERSLQNDRLA  465 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence            999999999999999875   45555444333333321        1346666666544321100 00      011233


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .+|.++...|++++|+..++++....|+++.+++.+|.+|..+|++++|+..|++++...|.+...+.. ++..+...++
T Consensus       466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a-~al~l~~~~~  544 (1157)
T PRK11447        466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA-YGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhCCC
Confidence            578899999999999999999999999999899999999999999999999999998655544332211 2223344555


Q ss_pred             hhHHHHHHHHcC-------------------------------CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000        366 TRLSFHLSHKLG-------------------------------DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID  414 (507)
Q Consensus       366 ~~~A~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~  414 (507)
                      +++|...+.++.                               +.+++...++.....++....++.++...|++++|+.
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~  624 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA  624 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            666655544432                               2223333333222223344667888888999999999


Q ss_pred             HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .|++++..+|+++.+...+|.+|...|++++|+..++.+++..|+++.+...++.++..+++.+.|.+.|++++...|..
T Consensus       625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=5.6e-30  Score=268.79  Aligned_cols=375  Identities=12%  Similarity=0.034  Sum_probs=228.1

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChh
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEK   87 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   87 (507)
                      ....|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..+.++....+.. .++           
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~-----------  197 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL-----------  197 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH-----------
Confidence            345799999999999999999999999996 6789999999999999999999999987644433 233           


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------------------------------Cchh---
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH------------------------------KDLL---  134 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~~~---  134 (507)
                                      +.+|.+|...|++++|+..|..+...+                              |.+.   
T Consensus       198 ----------------~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~  261 (615)
T TIGR00990       198 ----------------NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSV  261 (615)
T ss_pred             ----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence                            333444444444444444333332222                              1111   


Q ss_pred             ------------------------------HHHHHHHHHHH---hcCCHHHHHHHHHHHHhc---CCCcHHHHHHHhhhh
Q psy12000        135 ------------------------------ALNVYGAMCYY---KLDYYDVSQEQVAMYLAQ---KPTSRIALNLKACNT  178 (507)
Q Consensus       135 ------------------------------~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~a~~~~a~~~  178 (507)
                                                    ..+..++..+.   ..++|++|++.|++++..   +|+...+++.++.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~  341 (615)
T TIGR00990       262 TFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK  341 (615)
T ss_pred             HHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence                                          11111111111   123455555555555543   244444555555555


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhcc
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDT  255 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~  255 (507)
                      +..|++++|+..+++++     ...|..+.++..+|.++...|++++|+..+.+.   .|.++..+..+|.++...|+..
T Consensus       342 ~~~g~~~eA~~~~~kal-----~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       342 CLKGKHLEALADLSKSI-----ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA  416 (615)
T ss_pred             HHcCCHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            55555555555555443     123344445555555555555555555555432   4444444444555554444433


Q ss_pred             CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000        256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE  335 (507)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  335 (507)
                      .+...+++++..         .|+...++..+|.++..+|++++|+..++++....|+++.++..+|.++..+|++++|+
T Consensus       417 ~A~~~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  487 (615)
T TIGR00990       417 QAGKDYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI  487 (615)
T ss_pred             HHHHHHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            333333332221         22333444556777777777777777777776666766666666777777777777777


Q ss_pred             HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh-HhhHHHHHH
Q psy12000        336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL-RCHYQEAID  414 (507)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~Ai~  414 (507)
                      ..|++++...+.....+...                           ..+           ...+...+. .|++++|+.
T Consensus       488 ~~~~~Al~l~p~~~~~~~~~---------------------------~~l-----------~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       488 EKFDTAIELEKETKPMYMNV---------------------------LPL-----------INKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHHhcCCccccccccH---------------------------HHH-----------HHHHHHHHHHhhhHHHHHH
Confidence            77777664443221111000                           000           011122232 489999999


Q ss_pred             HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000        415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a  463 (507)
                      .+++++..+|++..++..+|.++..+|++++|+..|++++++.+.....
T Consensus       530 ~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999989999999999999999999999999998876653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.9e-29  Score=281.19  Aligned_cols=408  Identities=13%  Similarity=0.017  Sum_probs=266.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      ..|.++...|++++|+..|+++++.+|++++++..+|.++..+|++++|+..|+++....+.....          ... 
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~----------~~~-  342 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR----------DKW-  342 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch----------hHH-
Confidence            458999999999999999999999999999999999999999999999999999886533321100          000 


Q ss_pred             HHHHHHhhc-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         91 EYHQKLEDS-LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        91 ~~~~~l~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                        ...+... ......+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|++.|+++++.+|++..
T Consensus       343 --~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        343 --ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             --HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence              0000000 0002234555566666666666666666666666666666666666666666666666666666666554


Q ss_pred             HHHH------------------------------------------HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChh
Q psy12000        170 ALNL------------------------------------------KACNTYKLFTSRAAENQLKPILVSILPPLIDVIP  207 (507)
Q Consensus       170 a~~~------------------------------------------~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~  207 (507)
                      ++..                                          .+.++...|++++|+..+++++     ...|..+
T Consensus       421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-----~~~P~~~  495 (1157)
T PRK11447        421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-----ALDPGSV  495 (1157)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCCCCH
Confidence            4332                                          3334445667777777776654     2445667


Q ss_pred             HhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccc--h-
Q psy12000        208 ESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDT--V-  281 (507)
Q Consensus       208 ~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-  281 (507)
                      .+++.+|.+|...|++++|+..++++   .|.++..+...+..+...+       ..++|+..++.+.........  + 
T Consensus       496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~-------~~~~Al~~l~~l~~~~~~~~~~~l~  568 (1157)
T PRK11447        496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD-------RDRAALAHLNTLPRAQWNSNIQELA  568 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHhCCchhcChhHHHHH
Confidence            78888888888888888888888764   5666665555554443333       334555555544321110000  0 


Q ss_pred             -----hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhh
Q psy12000        282 -----PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHL  356 (507)
Q Consensus       282 -----~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  356 (507)
                           .....++.++...|++++|+.+++    ..|+++...+.+|.++.+.|++++|+..|++++..+|.+....    
T Consensus       569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~----  640 (1157)
T PRK11447        569 QRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR----  640 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----
Confidence                 011246788999999999999877    3577777888999999999999999999999987665443222    


Q ss_pred             cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh
Q psy12000        357 TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC  436 (507)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~  436 (507)
                                                              ..++.++...|++++|+..|++++...|+++.+...+|.+
T Consensus       641 ----------------------------------------~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        641 ----------------------------------------LGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             ----------------------------------------HHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence                                                    2223344455667777777777666666666666666777


Q ss_pred             ccccccchhHHHHHHHHHhcCCCch------hhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000        437 YYKLDYYDVSQEQVAMYLAQKPTSR------IALNLKACNTYKLFTSRAAENQLKPILVSA  491 (507)
Q Consensus       437 y~~~g~~~~A~~~~~~~l~~~P~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (507)
                      +..+|++++|+..++.++...|+++      .++...+.++...++...|.+.|+..+...
T Consensus       681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~  741 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS  741 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            7777777777777777766665443      233345666666666666666666666544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=1.3e-27  Score=250.90  Aligned_cols=407  Identities=12%  Similarity=0.011  Sum_probs=286.5

Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH
Q psy12000         42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID  121 (507)
Q Consensus        42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~  121 (507)
                      .+..+|..++..|+|++|+..|++++...+.                           +..+.++|.+|...|++++|+.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------------------------~~~~~n~a~~~~~l~~~~~Ai~  181 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------------------------PVYYSNRAACHNALGDWEKVVE  181 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------------------------hHHHHHHHHHHHHhCCHHHHHH
Confidence            4667899999999999999999987643321                           1125688999999999999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH---------
Q psy12000        122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK---------  192 (507)
Q Consensus       122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~---------  192 (507)
                      .+++++..+|++..+++.+|.+|..+|++++|+..|..++..++.............+.......+...++         
T Consensus       182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~  261 (615)
T TIGR00990       182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSV  261 (615)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence            99999999999999999999999999999999999988776665443211100000000000000110000         


Q ss_pred             ----HHHHh--------hCC---CCCCChhHhHHHHHHHHH---hhccHHHHHHHHHhcC------CCChHHHHHHHHHH
Q psy12000        193 ----PILVS--------ILP---PLIDVIPESRLNLVIYHL---KQEEHQEAFDLIKNLE------PSVPQEYILKAVVQ  248 (507)
Q Consensus       193 ----~~~~~--------~~~---~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~l~~~~------~~~~~~~~~~~~~~  248 (507)
                          .+...        .+.   ...+........++..+.   ..++|++|+..+++..      |.....+..+|.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~  341 (615)
T TIGR00990       262 TFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK  341 (615)
T ss_pred             HHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence                00000        000   011111123344444332   2479999999887653      33333455667777


Q ss_pred             HHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh
Q psy12000        249 VTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL  328 (507)
Q Consensus       249 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~  328 (507)
                      ...|+...+...++++++       .  .|+...++..+|.++...|++++|+.+++++...+|+++.+++++|.++...
T Consensus       342 ~~~g~~~eA~~~~~kal~-------l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       342 CLKGKHLEALADLSKSIE-------L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHcCCHHHHHHHHHHHHH-------c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            766665544444444433       2  2334455677899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh
Q psy12000        329 GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH  408 (507)
Q Consensus       329 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  408 (507)
                      |++++|+.+|++++..+|.+...+. .++.++...|+++.|...+.+....         .+..+.....+|.++...|+
T Consensus       413 g~~~~A~~~~~kal~l~P~~~~~~~-~la~~~~~~g~~~eA~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDLDPDFIFSHI-QLGVTQYKEGSIASSMATFRRCKKN---------FPEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             CCHHHHHHHHHHHHHcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHccC
Confidence            9999999999999887766555443 3566777778888877666543210         11112223456778888899


Q ss_pred             HHHHHHHHHHHhhcCCchhhhH------HHHH-hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000        409 YQEAIDIYKRILLDHKDLLALN------VYGA-MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE  481 (507)
Q Consensus       409 ~~~Ai~~~~~~l~~~p~~~~~~------~~la-~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~  481 (507)
                      +++|+..|++++...|+....+      ...+ .++...|++++|+..++++++++|++..++..+|.+++.+++.+.|.
T Consensus       483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi  562 (615)
T TIGR00990       483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL  562 (615)
T ss_pred             HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            9999999999999988753322      1222 33445799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q psy12000        482 NQLKPILVSAGPR  494 (507)
Q Consensus       482 ~~~~~~~~~~~~~  494 (507)
                      ..|+..++..+..
T Consensus       563 ~~~e~A~~l~~~~  575 (615)
T TIGR00990       563 KLFERAAELARTE  575 (615)
T ss_pred             HHHHHHHHHhccH
Confidence            9999999888754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=8.7e-27  Score=249.30  Aligned_cols=476  Identities=9%  Similarity=-0.061  Sum_probs=299.3

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH-HHHhcCChh
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH-LSHKLGDEK   87 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   87 (507)
                      .+..|..+...|++++|+..|+++++.+|+++.+++.++.+|+.+|++++|+..++++.+.++.+..+.. ++......+
T Consensus        47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~k  126 (987)
T PRK09782         47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVK  126 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChh
Confidence            3446777888899999999999999999999999999999999999999999999999876655431111 222222233


Q ss_pred             HHHHHHHHHhhcH---HHHHHH----------------------------------------HHHHHHhhcHHHHHHHHH
Q psy12000         88 SLMEYHQKLEDSL---EEQLCL----------------------------------------ASIHFLRCHYQEAIDIYK  124 (507)
Q Consensus        88 ~~~~~~~~l~~~~---~~~~~l----------------------------------------a~~~~~~g~~~~A~~~~~  124 (507)
                      ++..+.+.+...|   +.++.+                                        +.+|..+|++++|+..++
T Consensus       127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            3333333333222   123333                                        445555555555555555


Q ss_pred             HHHHhCCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH-------
Q psy12000        125 RILLDHKDLLALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV-------  196 (507)
Q Consensus       125 ~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~-------  196 (507)
                      ++++..|.+......++.+|.. +++ ++|..+++..++   +++.+...++..+.+.|+.+.|...+.++..       
T Consensus       207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~  282 (987)
T PRK09782        207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ  282 (987)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence            5555555555555555555554 344 444444333222   2333333444455556666666655544310       


Q ss_pred             ---------------------------------------------------hh---------------------------
Q psy12000        197 ---------------------------------------------------SI---------------------------  198 (507)
Q Consensus       197 ---------------------------------------------------~~---------------------------  198 (507)
                                                                         ++                           
T Consensus       283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  362 (987)
T PRK09782        283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL  362 (987)
T ss_pred             cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence                                                               00                           


Q ss_pred             -----CCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH------HHHHHHHHhhhccCc----------
Q psy12000        199 -----LPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI------LKAVVQVTIGQDTGS----------  257 (507)
Q Consensus       199 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~------~~~~~~~~~g~~~~~----------  257 (507)
                           .....|..+++...++...+.+|++++|...+....+...+...      ..+.++...+.....          
T Consensus       363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~  442 (987)
T PRK09782        363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL  442 (987)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence                 00011233455566677778888888888888776443222111      112222222110000          


Q ss_pred             --------HHHHHH---HHHHHHHhCCCccccc--chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000        258 --------REMVKA---AQALFQLVGSSQSECD--TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA  324 (507)
Q Consensus       258 --------~~~~~~---A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~  324 (507)
                              .+.+..   +...+....  +..|+  ...++..+|.++.. ++..+|+..+.++....|++. ....+|.+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~a  518 (987)
T PRK09782        443 PLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQ  518 (987)
T ss_pred             ccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHH
Confidence                    001111   111111111  11122  33455678888876 788888887777777777653 34556777


Q ss_pred             HHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHH------------------c---CCcHHHH
Q psy12000        325 KCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHK------------------L---GDEKSLM  383 (507)
Q Consensus       325 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------~---~~~~~~~  383 (507)
                      +...|++++|+..|+++....+.+...+  .++.++...|+.+.|...+.+                  .   ++.+++.
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~--~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHDMSNEDLL--AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccCCCcHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence            7788888888888888765433222211  234444555666665543322                  2   4444444


Q ss_pred             HHHHHhhhc---HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        384 EYHQKLEDS---LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       384 ~~~~~l~~~---~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      ..+......   .+....++.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++.+|++
T Consensus       597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD  676 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            444333221   22335577788888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        461 RIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       461 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +.+++.+|.+++.+++.+.|++.|++.++..|..
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=7.3e-28  Score=257.32  Aligned_cols=417  Identities=12%  Similarity=0.029  Sum_probs=302.7

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      -.+....|++++|++.|.++...+|....++..+|.++...|++++|+..++++....+.+                   
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-------------------   82 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-------------------   82 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------
Confidence            3467788999999999999998889998899999999999999999999999875443322                   


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                             +.....+|.++...|++++|+..+++++..+|+++. +..+|.++...|++++|+..+++++..+|+++.+..
T Consensus        83 -------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~  154 (765)
T PRK10049         83 -------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT  154 (765)
T ss_pred             -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                   122557888999999999999999999999999999 999999999999999999999999999999999888


Q ss_pred             HHhhhhhhccChHHHHHhhHHHHHhhCCCCCCCh-----hHhHHHHHHHH-----HhhccH---HHHHHHHHhcC---CC
Q psy12000        173 LKACNTYKLFTSRAAENQLKPILVSILPPLIDVI-----PESRLNLVIYH-----LKQEEH---QEAFDLIKNLE---PS  236 (507)
Q Consensus       173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~-----~~~~~~---~~A~~~l~~~~---~~  236 (507)
                      .++.++...+..+.|...++.+.     . .|..     ......++.++     ...+++   ++|+..++.+.   +.
T Consensus       155 ~la~~l~~~~~~e~Al~~l~~~~-----~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~  228 (765)
T PRK10049        155 EYVQALRNNRLSAPALGAIDDAN-----L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD  228 (765)
T ss_pred             HHHHHHHHCCChHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence            88888888888888888776531     1 1110     01111222222     223445   67777666543   44


Q ss_pred             ChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc-cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC
Q psy12000        237 VPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS-ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS  313 (507)
Q Consensus       237 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~  313 (507)
                      +|....  ..+.+. .++... ..+.+++|+..|+.+..... .|+  .+..++|.++..+|++++|+..|+++...+|.
T Consensus       229 ~p~~~~~~~~a~~d-~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~--~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~  304 (765)
T PRK10049        229 NPDATADYQRARID-RLGALL-ARDRYKDVISEYQRLKAEGQIIPP--WAQRWVASAYLKLHQPEKAQSILTELFYHPET  304 (765)
T ss_pred             CCccchHHHHHHHH-HHHHHH-HhhhHHHHHHHHHHhhccCCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence            443221  111110 011111 12456677777776544321 122  23345788888899999999888888766665


Q ss_pred             C----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000        314 D----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL  389 (507)
Q Consensus       314 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  389 (507)
                      +    ......++.++..+|++++|++.++++....|.....+    +...              . .+.+...      
T Consensus       305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~----~~~~--------------~-~p~~~~~------  359 (765)
T PRK10049        305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY----GSPT--------------S-IPNDDWL------  359 (765)
T ss_pred             CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec----CCCC--------------C-CCCchHH------
Confidence            4    23445577788888999999999888875544321111    0000              0 0000000      


Q ss_pred             hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000        390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  469 (507)
Q Consensus       390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~  469 (507)
                          .....++.++...|++++|+..+++++...|+++.+...+|.++...|++++|+..++++++++|+++.+...++.
T Consensus       360 ----~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        360 ----QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence                0112334566667999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        470 NTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      +...+++.+.|++.++.+++..|++.
T Consensus       436 ~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        436 TALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999883

>KOG2002|consensus

Probab=99.97  E-value=5.8e-27  Score=235.32  Aligned_cols=488  Identities=16%  Similarity=0.123  Sum_probs=344.4

Q ss_pred             CCccchhhHHH--HHHHhhcCHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHH
Q psy12000          3 NADSLTDAWLG--YCHFHLGQYKQALGIYETLRHLPNPP-EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFH   78 (507)
Q Consensus         3 ~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~   78 (507)
                      .+|+++...+|  .+.|..|||..|+.+|++++.++|.. +++...+|.|..++|+.+.|+..+.++...+|.. .++..
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~  238 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA  238 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence            56777777765  56778899999999999999999975 4788999999999999999999999886644432 12211


Q ss_pred             HH---HhcCChhHH----------------------------------HH----HHHHHhhc------HHHHHHHHHHHH
Q psy12000         79 LS---HKLGDEKSL----------------------------------ME----YHQKLEDS------LEEQLCLASIHF  111 (507)
Q Consensus        79 ~~---~~~~~~~~~----------------------------------~~----~~~~l~~~------~~~~~~la~~~~  111 (507)
                      ++   ....+.+..                                  ..    +.-.+...      .+.++.+|..|.
T Consensus       239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H  318 (1018)
T KOG2002|consen  239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH  318 (1018)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            11   111111000                                  00    01111110      133889999999


Q ss_pred             HhhcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc----ChHH
Q psy12000        112 LRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF----TSRA  186 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~----~~~~  186 (507)
                      .+|+|++|-.+|.+++..+|++ .-.++.||++|+..|+++.|...|+++++..|++...+.++|+++...+    ..+.
T Consensus       319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~  398 (1018)
T KOG2002|consen  319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK  398 (1018)
T ss_pred             hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence            9999999999999999999998 7778899999999999999999999999999999999999999988775    2356


Q ss_pred             HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc------cHHHHHHHHHhcCCCChHH-HHHHHHHHHHhhhccCcHH
Q psy12000        187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE------EHQEAFDLIKNLEPSVPQE-YILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~  259 (507)
                      |...+.+...     ..+...++|+.++.++..+.      -|..|+..+.......|.. ....|..++.+|....+.+
T Consensus       399 a~~~l~K~~~-----~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~  473 (1018)
T KOG2002|consen  399 ASNVLGKVLE-----QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE  473 (1018)
T ss_pred             HHHHHHHHHh-----cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence            6666665532     33667789999998877643      3455665554433334443 4457888899998888888


Q ss_pred             HHHHHHHHHHHhCCCccc-ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSE-CDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                      +++.|........+.+.. .-.+...+++|.++...++++.|-+.|+.+.+..|.-...+..+|......+...+|...+
T Consensus       474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l  553 (1018)
T KOG2002|consen  474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL  553 (1018)
T ss_pred             HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence            888887754322222211 1123346789999999999999999999999999988777888886667789999999999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHH----HHHHcCCc-------------------------------HHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFH----LSHKLGDE-------------------------------KSLM  383 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~-------------------------------~~~~  383 (507)
                      +.+++.+..+..+ ...+|.++.++.++..|-+    +..+....                               .+++
T Consensus       554 k~~l~~d~~np~a-rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl  632 (1018)
T KOG2002|consen  554 KDALNIDSSNPNA-RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL  632 (1018)
T ss_pred             HHHHhcccCCcHH-HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence            9998655433222 1234555555555544422    11111110                               0122


Q ss_pred             HHHHHhhhc-HHHHH---HHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCC-
Q psy12000        384 EYHQKLEDS-LEEQL---CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP-  458 (507)
Q Consensus       384 ~~~~~l~~~-~~~~~---~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P-  458 (507)
                      ..+.++-.. |.+..   ..|.+.-..|++.+|+++|.++.+.-.++++++.++|.||..+|+|-.|+++|+.+++++- 
T Consensus       633 q~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~  712 (1018)
T KOG2002|consen  633 QLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK  712 (1018)
T ss_pred             HHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222221111 11111   1344555567888888888888877777778888899999999999999999999988753 


Q ss_pred             -CchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCcc
Q psy12000        459 -TSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVR  496 (507)
Q Consensus       459 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (507)
                       +++..++.+|.++|+-+..+.+...+...+...|.+..
T Consensus       713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence             57788888999999877777777777888888887743

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=2.4e-27  Score=248.24  Aligned_cols=335  Identities=11%  Similarity=0.005  Sum_probs=254.0

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      .+......|++++|...++.++...|.++++++.+|.+....|++++|+..++++....|..                  
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~------------------  109 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ------------------  109 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC------------------
Confidence            45667788999999999999999999999999999999999999999999888875433322                  


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                              +..+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++..+|+++.++
T Consensus       110 --------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~  181 (656)
T PRK15174        110 --------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI  181 (656)
T ss_pred             --------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence                    122567888889999999999999999999999999999999999999999999999998888888888765


Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  251 (507)
                      ...+ .++..|++++|+..++.+.+    ..+.........++.++...|++++|+..+.+....+              
T Consensus       182 ~~~~-~l~~~g~~~eA~~~~~~~l~----~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--------------  242 (656)
T PRK15174        182 ATCL-SFLNKSRLPEDHDLARALLP----FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--------------  242 (656)
T ss_pred             HHHH-HHHHcCCHHHHHHHHHHHHh----cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence            4433 35666777777776665432    1111112233444566666777777766665432111              


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHH----HHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKD----VILYLSSIKSYYTSDDSFNFNFAQAKCA  327 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~----Ai~~~~~~~~~~~~~~~~~~~lg~~~~~  327 (507)
                                                |+...++..+|.++...|++++    |+..++++....|++..++.++|.++..
T Consensus       243 --------------------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        243 --------------------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             --------------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence                                      1222334467888888888885    7888999888888888888889999999


Q ss_pred             hCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh
Q psy12000        328 LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC  407 (507)
Q Consensus       328 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~  407 (507)
                      +|++++|+..+++++...|.+...+                                            ..++.++...|
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~--------------------------------------------~~La~~l~~~G  332 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVR--------------------------------------------AMYARALRQVG  332 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH--------------------------------------------HHHHHHHHHCC
Confidence            9999999999998876554332111                                            12344566678


Q ss_pred             hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                      ++++|+..|++++..+|+.+.+...+|.++..+|++++|+..|+++++.+|++.
T Consensus       333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999999998887777778889999999999999999999999986

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=1.5e-25  Score=239.64  Aligned_cols=379  Identities=11%  Similarity=-0.002  Sum_probs=284.9

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ....+|.++...|++++|+..|+++++.+|.+++++..++.++...|++++|+..++++....+..              
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~--------------  116 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK--------------  116 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------
Confidence            467799999999999999999999999999999999999999999999999999998876543332              


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                                  +. +..+|.++...|++++|+..|++++...|+++.++..+|.++...|+.++|++.++++.. +|+.
T Consensus       117 ------------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~  182 (765)
T PRK10049        117 ------------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE  182 (765)
T ss_pred             ------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence                        23 567899999999999999999999999999999999999999999999999999998776 6654


Q ss_pred             HHH-----HHHHhhhhhh-----ccCh---HHHHHhhHHHHHhhCCCCCCC---hhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000        168 RIA-----LNLKACNTYK-----LFTS---RAAENQLKPILVSILPPLIDV---IPESRLNLVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       168 ~~a-----~~~~a~~~~~-----~~~~---~~A~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~l~  231 (507)
                      ...     ......+.+.     .+++   ++|+..++.+.+ .....++.   ...+++.....++..|++++|+..++
T Consensus       183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~-~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~  261 (765)
T PRK10049        183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA-LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ  261 (765)
T ss_pred             HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            211     1111111111     1223   567777776653 12222222   22344442334467899999999998


Q ss_pred             hcCCCC---hHH-HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc--cchhhhhHHHHHHHhhcCHHHHHHHHH
Q psy12000        232 NLEPSV---PQE-YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC--DTVPGRQCMASSFFLLRSFKDVILYLS  305 (507)
Q Consensus       232 ~~~~~~---~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~Ai~~~~  305 (507)
                      ++....   |.. ....+.++...|+       +++|+..|+.+...+...  ........++.++...|++++|+..++
T Consensus       262 ~ll~~~~~~P~~a~~~la~~yl~~g~-------~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~  334 (765)
T PRK10049        262 RLKAEGQIIPPWAQRWVASAYLKLHQ-------PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA  334 (765)
T ss_pred             HhhccCCCCCHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            875432   432 2224566666665       456666665543322111  112233457778899999999999999


Q ss_pred             HhhhhcCC-------------C--chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHH
Q psy12000        306 SIKSYYTS-------------D--DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF  370 (507)
Q Consensus       306 ~~~~~~~~-------------~--~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  370 (507)
                      .+....|.             +  ..+.+.+|.++...|++++|++.+++++...|.+...+                  
T Consensus       335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~------------------  396 (765)
T PRK10049        335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR------------------  396 (765)
T ss_pred             HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------------
Confidence            88876552             2  23456789999999999999999999876655432211                  


Q ss_pred             HHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHH
Q psy12000        371 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV  450 (507)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  450 (507)
                                                ..++.++...|++++|+..+++++..+|+++.+.+.+|.++.++|++++|+..+
T Consensus       397 --------------------------~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        397 --------------------------IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             --------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence                                      223456667799999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCchhhhhH
Q psy12000        451 AMYLAQKPTSRIALNL  466 (507)
Q Consensus       451 ~~~l~~~P~~~~a~~~  466 (507)
                      +++++.+|+++.+..+
T Consensus       451 ~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        451 DDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHhCCCCHHHHHH
Confidence            9999999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=1.1e-25  Score=235.90  Aligned_cols=335  Identities=11%  Similarity=0.008  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ....+..+...|++++|...++.++...|+++++++.+|.+....|++++|+..+++++..+|+++.++..++.++...|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            34455667788899999999999999999988888888888888999999999999999999998888888888888888


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                      ++++|...++++.     ...|..+.++..++.++...|++++|+..+.++   .|.++..+... ..+...|       
T Consensus       125 ~~~~Ai~~l~~Al-----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g-------  191 (656)
T PRK15174        125 QYATVADLAEQAW-----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKS-------  191 (656)
T ss_pred             CHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcC-------
Confidence            8888888888764     245666778888888899999999988877654   45555433222 1233333       


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHH----HH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKE----AE  335 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~----A~  335 (507)
                      .+++|+..++.+....... .......++.++...|++++|+..++++....|+++.+++++|.++...|++++    |+
T Consensus       192 ~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~  270 (656)
T PRK15174        192 RLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA  270 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence            4455666665443221111 111223457888999999999999999999999998899999999999999986    89


Q ss_pred             HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000        336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  415 (507)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~  415 (507)
                      ..|++++...|.+...                                            ...++.++...|++++|+..
T Consensus       271 ~~~~~Al~l~P~~~~a--------------------------------------------~~~lg~~l~~~g~~~eA~~~  306 (656)
T PRK15174        271 EHWRHALQFNSDNVRI--------------------------------------------VTLYADALIRTGQNEKAIPL  306 (656)
T ss_pred             HHHHHHHhhCCCCHHH--------------------------------------------HHHHHHHHHHCCCHHHHHHH
Confidence            9999988666543211                                            13345677778999999999


Q ss_pred             HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      +++++..+|+++.+...+|.+|.++|++++|+..++++++.+|+++.+....+..+..+++.+.|.+.|+..++..|.+.
T Consensus       307 l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        307 LQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            99999999999999999999999999999999999999999999998877788899999999999999999999999873

>KOG2002|consensus

Probab=99.95  E-value=8.6e-26  Score=226.97  Aligned_cols=466  Identities=14%  Similarity=0.119  Sum_probs=340.6

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCC-------------------------------------CChhhHHHHH
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPN-------------------------------------PPEDTEFNIA   47 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------------------------------------~~~~~~~~la   47 (507)
                      .++..+.+|+|...+|+.+.|+..|+++++++|                                     .+|.+...++
T Consensus       198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA  277 (1018)
T KOG2002|consen  198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA  277 (1018)
T ss_pred             CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            456677788888888888888888888888777                                     4455566777


Q ss_pred             HHHHhhccHHHHHHHHHhCCCCc----cccchHHHHHHh---cCChh-HHHHHHHHHhhcHH----HHHHHHHHHHHhhc
Q psy12000         48 SCYFYLGMYLQANQILEKVPPSR----AKTRLSFHLSHK---LGDEK-SLMEYHQKLEDSLE----EQLCLASIHFLRCH  115 (507)
Q Consensus        48 ~~~~~~g~~~eA~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~----~~~~la~~~~~~g~  115 (507)
                      .-++..|+|+.+..++..+....    .....++.++..   .|+.+ +...|.+.++..+.    .++.+|++|...|+
T Consensus       278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d  357 (1018)
T KOG2002|consen  278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD  357 (1018)
T ss_pred             HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence            77777788887777776654322    222356666654   34433 33445555553332    27889999999999


Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000        116 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD----YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL  191 (507)
Q Consensus       116 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l  191 (507)
                      ++.|+.+|++++..+|++.+.+..+|.+|...+    ..++|..++.+++...|.+..++..++.++.+ ++...+...+
T Consensus       358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~  436 (1018)
T KOG2002|consen  358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAY  436 (1018)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHH
Confidence            999999999999999999999999999998876    78999999999999999999999988887654 4555557777


Q ss_pred             HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC-----CChHHH-HHHHHHHHHhhhccCcHHHHHHHH
Q psy12000        192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP-----SVPQEY-ILKAVVQVTIGQDTGSREMVKAAQ  265 (507)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~-----~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~  265 (507)
                      ..+.......-.+.+++...|+|..++..|++.+|...+.+...     .+++.. ...-.....++...+....++.|.
T Consensus       437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~  516 (1018)
T KOG2002|consen  437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE  516 (1018)
T ss_pred             HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence            77653222233346789999999999999999999998875422     122221 000112334555555566677888


Q ss_pred             HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q psy12000        266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG  345 (507)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~  345 (507)
                      +.|+.|...  .|..+.++..+|.+...+++..+|...++.+...+..++.++-.+|..+....++..|..-|+.++...
T Consensus       517 e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~  594 (1018)
T KOG2002|consen  517 EMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT  594 (1018)
T ss_pred             HHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence            888766432  344566677788777788999999999999999998888888889999999999999999888776332


Q ss_pred             CC--chhhhhhhhccc-----Cc-------cchhhhHHHHHHHHcCC---------------------cHHHHHHHHHhh
Q psy12000        346 LK--NDYVYISHLTKC-----SP-------SRAKTRLSFHLSHKLGD---------------------EKSLMEYHQKLE  390 (507)
Q Consensus       346 ~~--~~~~~~~~l~~~-----~~-------~~~~~~~A~~~~~~~~~---------------------~~~~~~~~~~l~  390 (507)
                      ..  +.+..++ ||..     +.       ..+.+++|+.+|.+..+                     ..++..+...+.
T Consensus       595 ~~~~D~Yslia-LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVr  673 (1018)
T KOG2002|consen  595 STKTDAYSLIA-LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVR  673 (1018)
T ss_pred             ccCCchhHHHH-hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence            22  2222222 2221     11       23455678887775432                     223445555554


Q ss_pred             hc----HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC--CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000        391 DS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       391 ~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~--p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      +.    .+.++.++.++..+|+|-.||+.|+.+++..  .+++.+..+||.+++.-|.+.+|.+.+-.++...|.++...
T Consensus       674 Ea~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~  753 (1018)
T KOG2002|consen  674 EATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK  753 (1018)
T ss_pred             HHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence            33    3456789999999999999999999999743  35678899999999999999999999999999999999988


Q ss_pred             hHHHhhhhhc
Q psy12000        465 NLKACNTYKL  474 (507)
Q Consensus       465 ~~~~~~~~~~  474 (507)
                      ..++-+++++
T Consensus       754 FN~a~v~kkl  763 (1018)
T KOG2002|consen  754 FNLALVLKKL  763 (1018)
T ss_pred             hHHHHHHHHH
Confidence            8888887753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=3.3e-24  Score=229.59  Aligned_cols=268  Identities=11%  Similarity=-0.021  Sum_probs=169.7

Q ss_pred             hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHH--HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhh
Q psy12000        206 IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILK--AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPG  283 (507)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (507)
                      .+.++.++|.++.. ++.++|+..+.+.....|..+...  +.++...|       .+++|+..|+++...+..   ...
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G-------r~eeAi~~~rka~~~~p~---~~a  544 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE-------DYATALAAWQKISLHDMS---NED  544 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC-------CHHHHHHHHHHHhccCCC---cHH
Confidence            44455666666655 566666665544322222222221  22222222       334455555443322111   122


Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      +..+|.++...|++++|+.+++++....|+.......++.....+|++++|+..|++++..+|. ...+. .++.++...
T Consensus       545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~-~LA~~l~~l  622 (987)
T PRK09782        545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYV-ARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHHC
Confidence            3445666666777777777776666666655444444455555557777777777776655443 22221 234444455


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                      |++++|...+.+....         -++.+.....++.++...|++++|+..|+++++.+|+++.+++++|+++..+|++
T Consensus       623 G~~deA~~~l~~AL~l---------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        623 HNVPAAVSDLRAALEL---------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             CCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            5555554444332110         0111223355677888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      ++|+..++++++..|+++......+++.-.-...+.+...++..+-..|.-.
T Consensus       694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            9999999999999999999999999988887778888888888888877654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.94  E-value=4.8e-23  Score=216.49  Aligned_cols=457  Identities=12%  Similarity=-0.005  Sum_probs=330.6

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      .....+..+.+.++.|+++.|+..|+++++.+|.++....-++.++...|+.++|+..++++....+..           
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-----------  101 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-----------  101 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-----------
Confidence            455667789999999999999999999999999996443488888889999999999999987322211           


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                                     ......+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+
T Consensus       102 ---------------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        102 ---------------SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence                           01134567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC-ChHHH-H
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS-VPQEY-I  242 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~-~~~~~-~  242 (507)
                      |++... ..++.++...++..+|+..++++++     ..|..+++...+..+..+.|-...|.+.+.+...- ++... -
T Consensus       167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~-----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~  240 (822)
T PRK14574        167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVR-----LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ  240 (822)
T ss_pred             cchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence            996664 4444454445666568888888753     45777788889999999999999999888764211 11111 1


Q ss_pred             HH---HHHHHHhhhccC-----cHHHHHHHHHHHHHh----CCCccc-ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000        243 LK---AVVQVTIGQDTG-----SREMVKAAQALFQLV----GSSQSE-CDTVPGRQCMASSFFLLRSFKDVILYLSSIKS  309 (507)
Q Consensus       243 ~~---~~~~~~~g~~~~-----~~~~~~~A~~~~~~~----~~~~~~-~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~  309 (507)
                      +.   +...+..+....     .-...++|..-+..+    ...+.. +....++.-.-.++...+++.+++.-|+.+..
T Consensus       241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~  320 (822)
T PRK14574        241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA  320 (822)
T ss_pred             HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            11   111111221111     111334444433332    222211 11122222334567788999999999998875


Q ss_pred             hc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc-----hhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHH
Q psy12000        310 YY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN-----DYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLM  383 (507)
Q Consensus       310 ~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (507)
                      .. |-++-+.-..|.+|..++++++|+.+|.+++...+..     ......-|-.++.-.+++++|..+..++.....- 
T Consensus       321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-  399 (822)
T PRK14574        321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-  399 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-
Confidence            54 3344456678999999999999999999987543211     1100111233555667777777666655432110 


Q ss_pred             HHHHHhh---hc-HHH----HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000        384 EYHQKLE---DS-LEE----QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  455 (507)
Q Consensus       384 ~~~~~l~---~~-~~~----~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~  455 (507)
                       ......   .. .++    ...++..+...|++.+|...+++++...|.+..+...+|.++...|++.+|+..++.++.
T Consensus       400 -~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        400 -QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             -EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence             000000   00 112    223455566679999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        456 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       456 ~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      ++|++..+..-++...+.+++.+.|++...++.+.+|++.
T Consensus       479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            9999999999999999999999999999999999999983

>KOG0547|consensus

Probab=99.94  E-value=8.7e-24  Score=197.74  Aligned_cols=370  Identities=17%  Similarity=0.104  Sum_probs=270.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +-..|.-++..|+|++||++|.++|+.+|+.+..+.+++-||...|+|++-++...+++.++|++..+++.++..+-++|
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHhhHHH------------------HH--------hhCC-CCCCChh---------------------------H
Q psy12000        183 TSRAAENQLKPI------------------LV--------SILP-PLIDVIP---------------------------E  208 (507)
Q Consensus       183 ~~~~A~~~l~~~------------------~~--------~~~~-~~~~~~~---------------------------~  208 (507)
                      ++++|...+.-.                  ++        ..+. .-+|..|                           +
T Consensus       198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD  277 (606)
T KOG0547|consen  198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD  277 (606)
T ss_pred             cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence            998876433221                  00        0011 0111111                           1


Q ss_pred             hHHHHHHHHHhh---ccHHHHHHHHHhc-------CCCC---------hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000        209 SRLNLVIYHLKQ---EEHQEAFDLIKNL-------EPSV---------PQEYILKAVVQVTIGQDTGSREMVKAAQALFQ  269 (507)
Q Consensus       209 ~~~~l~~~~~~~---~~~~~A~~~l~~~-------~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  269 (507)
                      +-..=+.-++..   ..|.+|...+.+-       ...+         .....++|..++..|+...+...+++++.+..
T Consensus       278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~  357 (606)
T KOG0547|consen  278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP  357 (606)
T ss_pred             hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence            111111111222   3677777665431       1111         23345677888888888888899998887543


Q ss_pred             HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                      ..         ..-+..+|.+|...++-++-..+|.++..++|+++.+++.+|.+++-++++++|++.|++++..+|.+.
T Consensus       358 ~~---------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  358 AF---------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             cc---------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            21         111446899999999999999999999999999999999999999999999999999999999888777


Q ss_pred             hhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc----
Q psy12000        350 YVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD----  425 (507)
Q Consensus       350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~----  425 (507)
                      ..|+.. +-+.++.+++......+..         ...+.+..++..-..+.+..-+++|++|++.|+++++..|.    
T Consensus       429 ~~~iQl-~~a~Yr~~k~~~~m~~Fee---------~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  429 YAYIQL-CCALYRQHKIAESMKTFEE---------AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            666542 2222333333322222111         11223333334444566777788999999999999999998    


Q ss_pred             --hhhhHHHHHhhcc-ccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000        426 --LLALNVYGAMCYY-KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA  491 (507)
Q Consensus       426 --~~~~~~~la~~y~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (507)
                        ++....+-|.+.. =.++++.|++.++++++.+|....|+-.+|.+.....+-+.|+..|.+-.+.+
T Consensus       499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              5555554444332 24889999999999999999999999999998888888888888888766654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=1.9e-22  Score=201.00  Aligned_cols=141  Identities=10%  Similarity=0.007  Sum_probs=118.5

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      .....+..|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++...+.....         
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------  104 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---------  104 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---------
Confidence            34455678999999999999999999999999999999999999999999999999999887543221100         


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                        .           ....+..+|.+|...|++++|+..|++++..+|.+..++..++.++...|++++|++.++++++.+
T Consensus       105 --~-----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        105 --Q-----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             --H-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence              0           001256789999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCc
Q psy12000        165 PTS  167 (507)
Q Consensus       165 p~~  167 (507)
                      |.+
T Consensus       172 ~~~  174 (389)
T PRK11788        172 GDS  174 (389)
T ss_pred             CCc
Confidence            654

>KOG0548|consensus

Probab=99.91  E-value=1.4e-22  Score=192.66  Aligned_cols=419  Identities=17%  Similarity=0.131  Sum_probs=272.9

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      .-|+..+..|||+.|+.+|.+++.++|.+.-.+.+...+|..+|+|++|++...+..+..+..                 
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-----------------   69 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-----------------   69 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-----------------
Confidence            358899999999999999999999999998899999999999999999999888776533321                 


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                               +..+..+|..+.-.|+|++|+..|.+.|+.+|++..++..++.++  .-++.. .+.|.     .|.... 
T Consensus        70 ---------~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~--~~~~~~-~~~~~-----~p~~~~-  131 (539)
T KOG0548|consen   70 ---------AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY--LEDYAA-DQLFT-----KPYFHE-  131 (539)
T ss_pred             ---------hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh--hHHHHh-hhhcc-----CcHHHH-
Confidence                     223678899999999999999999999999999999999999888  222111 11111     111100 


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--------------CCC
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--------------EPS  236 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--------------~~~  236 (507)
                        -++..-  .-++-.....|..+.. .. ...|.....       |+.-....+|...+..+              .+.
T Consensus       132 --~l~~~p--~t~~~~~~~~~~~~l~-~~-~~~p~~l~~-------~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~  198 (539)
T KOG0548|consen  132 --KLANLP--LTNYSLSDPAYVKILE-II-QKNPTSLKL-------YLNDPRLMKADGQLKGVDELLFYASGIEILASMA  198 (539)
T ss_pred             --HhhcCh--hhhhhhccHHHHHHHH-Hh-hcCcHhhhc-------ccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence              000000  0000000011111110 00 000100000       11111111111111100              011


Q ss_pred             ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch
Q psy12000        237 VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS  316 (507)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~  316 (507)
                      .|...-       .-+.. .-.+..++..   ....        ...+-.+|....+..++..|++-+..+..++ .+..
T Consensus       199 ~p~~~~-------~~~~~-~~~d~~ee~~---~k~~--------a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it  258 (539)
T KOG0548|consen  199 EPCKQE-------HNGFP-IIEDNTEERR---VKEK--------AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDIT  258 (539)
T ss_pred             Cccccc-------CCCCC-ccchhHHHHH---HHHh--------hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhH
Confidence            111000       00000 0000001000   0000        0112257889999999999999999888888 6666


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhhcccCCC--chhhh----hhhhcccCccchhhhHHHHHHHHcCCcH---HHHHHHH
Q psy12000        317 FNFNFAQAKCALGQYKEAEEMFLLVQNEGLK--NDYVY----ISHLTKCSPSRAKTRLSFHLSHKLGDEK---SLMEYHQ  387 (507)
Q Consensus       317 ~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~  387 (507)
                      .+.+.+.+|+..|++.+++....++++....  .....    ++.+|.++.+.++++.++..+.+.....   +.+.-.+
T Consensus       259 ~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk  338 (539)
T KOG0548|consen  259 YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLK  338 (539)
T ss_pred             HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHH
Confidence            7788899999999999999888887643311  11111    2235678888888888888777654322   1222111


Q ss_pred             Hhhhc-----------HH---HHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHH
Q psy12000        388 KLEDS-----------LE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  453 (507)
Q Consensus       388 ~l~~~-----------~~---~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~  453 (507)
                      .....           ++   ....-|.-++..|+|..|+..|++++..+|++..++.+.|.||.++|.+..|++..+.+
T Consensus       339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            11111           00   01224667778899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccC
Q psy12000        454 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF  497 (507)
Q Consensus       454 l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (507)
                      ++++|++..++..+|.+++.+.....|...|++.++++|.+-++
T Consensus       419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99999999999999999999999999999999999999988543

>KOG2003|consensus

Probab=99.91  E-value=4.1e-22  Score=184.78  Aligned_cols=399  Identities=16%  Similarity=0.161  Sum_probs=210.2

Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHH
Q psy12000         42 TEFNIASCYFYLGMYLQANQILEKVPPSR--AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  119 (507)
Q Consensus        42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A  119 (507)
                      +.++++.-|-....+.||+..++-+.+..  ++...                          ..+++|.+|+++.+|.+|
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~--------------------------lkmnigni~~kkr~fska  256 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGI--------------------------LKMNIGNIHFKKREFSKA  256 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCce--------------------------eeeeecceeeehhhHHHH
Confidence            46677777777777777777766554321  11100                          024566677777777777


Q ss_pred             HHHHHHHHHhCCc-----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        120 IDIYKRILLDHKD-----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       120 ~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      +++|+.++..-|.     ...++.++|..+.+.|+|+.|+..|+.++...|+...++++.. +++-.|+-+...++|.++
T Consensus       257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kl  335 (840)
T KOG2003|consen  257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKL  335 (840)
T ss_pred             HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHH
Confidence            7777777666663     2345566666677777777777777777777776666666443 334455555555555554


Q ss_pred             HH--------------------------------------------------hhC-CCCC--------------------
Q psy12000        195 LV--------------------------------------------------SIL-PPLI--------------------  203 (507)
Q Consensus       195 ~~--------------------------------------------------~~~-~~~~--------------------  203 (507)
                      +.                                                  ++. +-..                    
T Consensus       336 i~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~  415 (840)
T KOG2003|consen  336 IDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHA  415 (840)
T ss_pred             hcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhh
Confidence            31                                                  000 0000                    


Q ss_pred             CChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH----HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccccc
Q psy12000        204 DVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI----LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD  279 (507)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~  279 (507)
                      +...+.-.+-+.-|+++|+++.|+++++-+...+...-.    .....++..|-     ..+..|.++-......+..  
T Consensus       416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg-----k~~~~aqqyad~aln~dry--  488 (840)
T KOG2003|consen  416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG-----KDFADAQQYADIALNIDRY--  488 (840)
T ss_pred             hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc-----cchhHHHHHHHHHhccccc--
Confidence            111122345566789999999999998766443322111    11111111111     1122233222221111100  


Q ss_pred             chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhccc
Q psy12000        280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKC  359 (507)
Q Consensus       280 ~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  359 (507)
                      ...+....|.+-+..|++++|.+.|+.++..+.....++|+.|..+..+|+.++|+.+|-+.-..-..+..+. --++..
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-~qiani  567 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-VQIANI  567 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence            0001112344445555555555555555444333344455555555555555555555544210000000010 012223


Q ss_pred             CccchhhhHHHHHHH---------------------HcCCcHHHHHHHHH----hhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000        360 SPSRAKTRLSFHLSH---------------------KLGDEKSLMEYHQK----LEDSLEEQLCLASIHFLRCHYQEAID  414 (507)
Q Consensus       360 ~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~Ai~  414 (507)
                      |....+...|++++.                     +-++...+...+-.    +.-+++..-+++.-+....-.++||.
T Consensus       568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~  647 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN  647 (840)
T ss_pred             HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence            333333333333332                     22222222222111    01111111223333333456789999


Q ss_pred             HHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        415 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       415 ~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      +|+++--..|+-..+...+|.|+.+.|+|++|.+.|++...++|.+..++.++-++.=-++
T Consensus       648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999887666543333

>KOG1173|consensus

Probab=99.90  E-value=2.5e-21  Score=184.77  Aligned_cols=413  Identities=17%  Similarity=0.129  Sum_probs=286.4

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC------Ccccc----
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP------SRAKT----   73 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~------~~~~~----   73 (507)
                      .++.--+|+|.+++-.|+|.+|....+.- .....+....+..+.|+..++++++|..++.....      ..+..    
T Consensus        47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~  125 (611)
T KOG1173|consen   47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT  125 (611)
T ss_pred             CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence            34555689999999999999998877665 44555666788899999999999999998873310      00000    


Q ss_pred             ----------------chHHH---HHHhcCC-hhHHHHHHHHHh---hcHH-------HHHHHH-H--HHH-------Hh
Q psy12000         74 ----------------RLSFH---LSHKLGD-EKSLMEYHQKLE---DSLE-------EQLCLA-S--IHF-------LR  113 (507)
Q Consensus        74 ----------------~~~~~---~~~~~~~-~~~~~~~~~~l~---~~~~-------~~~~la-~--~~~-------~~  113 (507)
                                      .+.+.   ....... ..+-..+.+.+.   .+.+       ..+..+ .  ..+       ..
T Consensus       126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~  205 (611)
T KOG1173|consen  126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT  205 (611)
T ss_pred             eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence                            00000   0000111 111112222222   1111       111111 0  000       11


Q ss_pred             hcHHHHHHHHHHHH----------HhCC--------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        114 CHYQEAIDIYKRIL----------LDHK--------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       114 g~~~~A~~~~~~~l----------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      +...+=.+.+=++.          ..+|        +++++....+..++..++|.+..++++.++..+|-+...+-+..
T Consensus       206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i  285 (611)
T KOG1173|consen  206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI  285 (611)
T ss_pred             hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence            22222222221111          1112        34567777888899999999999999999999999998776655


Q ss_pred             hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHHHHHHHHhh
Q psy12000        176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIG  252 (507)
Q Consensus       176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~~~~~~~~g  252 (507)
                      .+++.+|+...--..=-+     +.+.-|..+-.|+.+|..|+-.|++++|.+.+.+   ++|.....|+..|.++...|
T Consensus       286 a~l~el~~~n~Lf~lsh~-----LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~  360 (611)
T KOG1173|consen  286 ACLYELGKSNKLFLLSHK-----LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG  360 (611)
T ss_pred             HHHHHhcccchHHHHHHH-----HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc
Confidence            566666654332111111     1233455666899999999999999999999976   57888889999999999889


Q ss_pred             hccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHH
Q psy12000        253 QDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK  332 (507)
Q Consensus       253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  332 (507)
                      ....++..|-.|-+++..-.        .| ...+|.-|...++++-|..+|..+..+.|++|.+...+|.+.+..+.|.
T Consensus       361 EhdQAmaaY~tAarl~~G~h--------lP-~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~  431 (611)
T KOG1173|consen  361 EHDQAMAAYFTAARLMPGCH--------LP-SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP  431 (611)
T ss_pred             hHHHHHHHHHHHHHhccCCc--------ch-HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence            88888888888887764211        22 3468999999999999999999999999999988888999999999999


Q ss_pred             HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000        333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  412 (507)
Q Consensus       333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A  412 (507)
                      +|..+|++++..-...                            .+  +...+       .+-...+|.++...++|++|
T Consensus       432 ~A~~~f~~~l~~ik~~----------------------------~~--e~~~w-------~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  432 EALKYFQKALEVIKSV----------------------------LN--EKIFW-------EPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHHhhhc----------------------------cc--cccch-------hHHHHhHHHHHHHHhhHHHH
Confidence            9999999876211000                            00  00000       01124467787888999999


Q ss_pred             HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000        413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  468 (507)
Q Consensus       413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~  468 (507)
                      |.+|++++...|.++..+..+|.+|..+|++|.|++.|.++|-+.|++..+--+++
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999977655544

>KOG0547|consensus

Probab=99.90  E-value=2.4e-20  Score=174.92  Aligned_cols=401  Identities=11%  Similarity=0.043  Sum_probs=273.0

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc-cchHHHHHHhcCChhHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK-TRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   89 (507)
                      ..|+-+|..|+|++||++|+.+++..|+.+..|.+++-||...|+|++.++...++.+..+. ..+++.-+......+..
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence            36999999999999999999999999999999999999999999999999999988764443 23454444332222222


Q ss_pred             HHHHHHH------hhcHHH-H-HHHHHHHHHhhcH----------------HHHHHHHHHHHHhCCc-------h-hHHH
Q psy12000         90 MEYHQKL------EDSLEE-Q-LCLASIHFLRCHY----------------QEAIDIYKRILLDHKD-------L-LALN  137 (507)
Q Consensus        90 ~~~~~~l------~~~~~~-~-~~la~~~~~~g~~----------------~~A~~~~~~~l~~~p~-------~-~~~~  137 (507)
                      .++...+      ...... . ..+-.++-++|.-                ..-+..|-.+...+|.       + .++-
T Consensus       200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~  279 (606)
T KOG0547|consen  200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA  279 (606)
T ss_pred             HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence            2221111      100000 0 0011111111110                0122222222222221       0 1111


Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHhc---CC-Cc---------HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC
Q psy12000        138 VYGAMCYYKLD---YYDVSQEQVAMYLAQ---KP-TS---------RIALNLKACNTYKLFTSRAAENQLKPILVSILPP  201 (507)
Q Consensus       138 ~~la~~~~~~g---~~~~A~~~~~~~l~~---~p-~~---------~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~  201 (507)
                      ..-+.-+...+   .|.+|...+.+....   .+ .+         ..++.+.|..++-.|+...|...|+.+++     
T Consensus       280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~-----  354 (606)
T KOG0547|consen  280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK-----  354 (606)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh-----
Confidence            11111112222   566666666554321   01 11         23567777788888888888888887753     


Q ss_pred             CCCChhHhHHHHHHHHHhhccHHHHHHHHH---hcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc
Q psy12000        202 LIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC  278 (507)
Q Consensus       202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (507)
                      +.+..+..+..++.+|+...+-++-+..|.   .++|.+|+.+.-+|.+.+.+++...+...|++|+.+         .|
T Consensus       355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L---------~p  425 (606)
T KOG0547|consen  355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL---------DP  425 (606)
T ss_pred             cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---------Ch
Confidence            445555668889999999999888888776   468999999999999999988877777777777642         44


Q ss_pred             cchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcc
Q psy12000        279 DTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTK  358 (507)
Q Consensus       279 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  358 (507)
                      ..+.++..++...++++++++++..|+.++...|+.+.++...|.++..++++++|++.|.+++..++....++.+.   
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~---  502 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA---  502 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc---
Confidence            56667778999999999999999999999999999998888789999999999999999999988776544333221   


Q ss_pred             cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcc
Q psy12000        359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY  438 (507)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~  438 (507)
                      +                        .+   +..   .-+.   ..+ .+++.+|+.+++++++.+|..-.++..||-.-.
T Consensus       503 ~------------------------pl---V~K---a~l~---~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l  548 (606)
T KOG0547|consen  503 A------------------------PL---VHK---ALLV---LQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFEL  548 (606)
T ss_pred             h------------------------hh---hhh---hHhh---hch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            0                        00   000   0000   111 278999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHhcCCCchh
Q psy12000        439 KLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       439 ~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                      ++|+.++|++.|++++.+--...+
T Consensus       549 Q~~~i~eAielFEksa~lArt~~E  572 (606)
T KOG0547|consen  549 QRGKIDEAIELFEKSAQLARTESE  572 (606)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999876544333

>KOG3785|consensus

Probab=99.90  E-value=2.1e-22  Score=181.39  Aligned_cols=187  Identities=45%  Similarity=0.744  Sum_probs=169.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000        285 QCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA  364 (507)
Q Consensus       285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  364 (507)
                      .|+|.|++..|+|++|+..|.-+...+.-+..+..+|+.+++-.|+|.+|...-.++-+...                  
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL------------------  122 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL------------------  122 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChH------------------
Confidence            47999999999999999988877654433445678899999999999999999888744321                  


Q ss_pred             hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000        365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD  444 (507)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~  444 (507)
                      ..+..+.+..+++++.+.+..++.++++.+++++++.++|.+-+|++||++|++++..+|+...++.++|.||+|+.-+|
T Consensus       123 ~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd  202 (557)
T KOG3785|consen  123 CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD  202 (557)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence            13556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000        445 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV  489 (507)
Q Consensus       445 ~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (507)
                      .+.+++...++.+||++.|.|+++|++|++.+|+.++.+.++|..
T Consensus       203 vsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad  247 (557)
T KOG3785|consen  203 VSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELAD  247 (557)
T ss_pred             hHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence            999999999999999999999999999999999999998888764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=2.1e-20  Score=186.43  Aligned_cols=309  Identities=14%  Similarity=0.024  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR----IALNLKACNT  178 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~a~~~~a~~~  178 (507)
                      .+.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+...    .++..++.++
T Consensus        38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~  117 (389)
T PRK11788         38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY  117 (389)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999887533222    2344556666


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcH
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSR  258 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~  258 (507)
                      ...|+++.|...++++.+     ..+....++..++.++..+|++++|++.+.++....|.                   
T Consensus       118 ~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------------------  173 (389)
T PRK11788        118 LKAGLLDRAEELFLQLVD-----EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-------------------  173 (389)
T ss_pred             HHCCCHHHHHHHHHHHHc-----CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-------------------
Confidence            666677777666665531     23334455666666666666666666655433111100                   


Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                                      +........+..+|.++...|++++|+.+++++.+..|+...+++.+|.++...|++++|++.|
T Consensus       174 ----------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  237 (389)
T PRK11788        174 ----------------SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL  237 (389)
T ss_pred             ----------------cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                            0000011123457888899999999999999998888887778888999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR  418 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~  418 (507)
                      ++++..++....                                 .          ....++.++...|++++|+..+++
T Consensus       238 ~~~~~~~p~~~~---------------------------------~----------~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        238 ERVEEQDPEYLS---------------------------------E----------VLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             HHHHHHChhhHH---------------------------------H----------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            998754321100                                 0          012234577788999999999999


Q ss_pred             HhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC--ChHHHHHHHHH----HHHhCC
Q psy12000        419 ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF--TSRAAENQLKP----ILVSAG  492 (507)
Q Consensus       419 ~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~  492 (507)
                      ++...|+...+ ..+|.++.+.|++++|+..++++++.+|+++....++......-.  ..+.+...++.    ++...|
T Consensus       275 ~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        275 ALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             HHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence            99999987655 788999999999999999999999999999976655554443222  33444444554    445555


Q ss_pred             CCc
Q psy12000        493 PRV  495 (507)
Q Consensus       493 ~~~  495 (507)
                      .+.
T Consensus       354 ~~~  356 (389)
T PRK11788        354 RYR  356 (389)
T ss_pred             CEE
Confidence            543

>KOG1126|consensus

Probab=99.88  E-value=1.2e-20  Score=183.75  Aligned_cols=302  Identities=14%  Similarity=0.099  Sum_probs=236.9

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChH
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR  185 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~  185 (507)
                      .|.....+-+..+|+..|.+.-...++..++...+|..|+.+++|++|..+|+.+-+..|--....-....++..+.+. 
T Consensus       325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-  403 (638)
T KOG1126|consen  325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-  403 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh-
Confidence            3444445677889999999977778898999999999999999999999999999999998777666666666554432 


Q ss_pred             HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHH
Q psy12000        186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ  265 (507)
Q Consensus       186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  265 (507)
                      -+...+.    +.+...++..|+.|-.+|.+|.-+++++.|+..+++....+|..    +.+|..+|......+.+++|.
T Consensus       404 v~Ls~La----q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~~~~ee~d~a~  475 (638)
T KOG1126|consen  404 VALSYLA----QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHESIATEEFDKAM  475 (638)
T ss_pred             HHHHHHH----HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChhhhhHHHHhHH
Confidence            2222222    23345678899999999999999999999999998764444421    123445666666677888888


Q ss_pred             HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccC
Q psy12000        266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG  345 (507)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~  345 (507)
                      ..|+....  .+++...||+.+|.+|.++++++.|.-.|+++.+++|.+....-.+|.++.+.|+.|+|+.+|++++..+
T Consensus       476 ~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  476 KSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             HHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            88876542  3456778888899999999999999999999999999888777888999999999999999999987666


Q ss_pred             CCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc
Q psy12000        346 LKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD  425 (507)
Q Consensus       346 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~  425 (507)
                      +.+...                    .                        ...+.+.+..++|++|+..++++-+.-|+
T Consensus       554 ~kn~l~--------------------~------------------------~~~~~il~~~~~~~eal~~LEeLk~~vP~  589 (638)
T KOG1126|consen  554 PKNPLC--------------------K------------------------YHRASILFSLGRYVEALQELEELKELVPQ  589 (638)
T ss_pred             CCCchh--------------------H------------------------HHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence            543210                    0                        11234666678999999999999999999


Q ss_pred             hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        426 LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       426 ~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                      ...+++.+|.+|.++|+.+.|+..|--+..++|.-..
T Consensus       590 es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  590 ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            9999999999999999999999999999999887544

>KOG2076|consensus

Probab=99.88  E-value=2.5e-18  Score=172.64  Aligned_cols=454  Identities=15%  Similarity=0.050  Sum_probs=264.6

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      .+..|+..+..|++++|.+++.++++++|.++.+|+.+|.||-.+|+.++|....-.+.-..+.                
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~----------------  205 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK----------------  205 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC----------------
Confidence            3446888999999999999999999999999999999999999999999998865544221111                


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                +.+.+..++....++|++.+|+-+|.++|+.+|.+....+..+.+|-++|+...|.+.|.+++...|...
T Consensus       206 ----------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d  275 (895)
T KOG2076|consen  206 ----------DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD  275 (895)
T ss_pred             ----------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence                      1223555666666666677777777777777776666666666666677777777777766666666211


Q ss_pred             H----H-HHHHhhhhhhccChHHHHHhhHHHHH-----------------------------------h-----------
Q psy12000        169 I----A-LNLKACNTYKLFTSRAAENQLKPILV-----------------------------------S-----------  197 (507)
Q Consensus       169 ~----a-~~~~a~~~~~~~~~~~A~~~l~~~~~-----------------------------------~-----------  197 (507)
                      .    . ....+......+..+.|...++....                                   .           
T Consensus       276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~  355 (895)
T KOG2076|consen  276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD  355 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence            1    0 00011111122222333333332211                                   0           


Q ss_pred             ----------hCCCC----CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000        198 ----------ILPPL----IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA  263 (507)
Q Consensus       198 ----------~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  263 (507)
                                .+...    ....+-.+..++.+.++.++..+++..+.......+.+   ....+..+.+.....+.++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d---~~dL~~d~a~al~~~~~~~~  432 (895)
T KOG2076|consen  356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD---DVDLYLDLADALTNIGKYKE  432 (895)
T ss_pred             hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---hHHHHHHHHHHHHhcccHHH
Confidence                      00000    00011125555666666667666665554322111111   01122222222333456788


Q ss_pred             HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      |+.+|..+...+.. +....|..+|.||..+|.|++|+++|++++...|++..+...|+.++.++|+.++|.+.+..+..
T Consensus       433 Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~  511 (895)
T KOG2076|consen  433 ALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN  511 (895)
T ss_pred             HHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence            99998876554332 22345667999999999999999999999999999999999999999999999999999999876


Q ss_pred             cCCCchhhh--------hhhhcccCccchhhhHHH----H----------------------------------------
Q psy12000        344 EGLKNDYVY--------ISHLTKCSPSRAKTRLSF----H----------------------------------------  371 (507)
Q Consensus       344 ~~~~~~~~~--------~~~l~~~~~~~~~~~~A~----~----------------------------------------  371 (507)
                      +++.+...-        .......+...|+.+.=+    .                                        
T Consensus       512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~  591 (895)
T KOG2076|consen  512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR  591 (895)
T ss_pred             CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence            653321000        000011111111111100    0                                        


Q ss_pred             HHHHcCCcHHH---H-----HHHHHhh-hcHHHHH--HHHHH--HHhHhhHHHHHHHHHHHhhc-----CCchh-hhHHH
Q psy12000        372 LSHKLGDEKSL---M-----EYHQKLE-DSLEEQL--CLASI--HFLRCHYQEAIDIYKRILLD-----HKDLL-ALNVY  432 (507)
Q Consensus       372 ~~~~~~~~~~~---~-----~~~~~l~-~~~~~~~--~l~~~--~~~~~~~~~Ai~~~~~~l~~-----~p~~~-~~~~~  432 (507)
                      .-.+..+....   .     ....... -+++++.  .+..+  ....+++++|.++...++..     +++.. .+.+-
T Consensus       592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~  671 (895)
T KOG2076|consen  592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL  671 (895)
T ss_pred             HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence            00000110000   0     0000000 0133432  22222  23347999999999988752     23322 34444


Q ss_pred             HHhhccccccchhHHHHHHHHHhc-----CCCchhhhhHHHhhhhhcCChHHHH--HHHHHHHHhCCCC
Q psy12000        433 GAMCYYKLDYYDVSQEQVAMYLAQ-----KPTSRIALNLKACNTYKLFTSRAAE--NQLKPILVSAGPR  494 (507)
Q Consensus       433 la~~y~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  494 (507)
                      ...|-...+++..|.+.++-++..     +|-....+|+..+....  .+++..  +.+..+.+..|.+
T Consensus       672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~--~~q~v~~~R~~~~~~~~~~~~  738 (895)
T KOG2076|consen  672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSK--YGQRVCYLRLIMRLLVKNKDD  738 (895)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccCccC
Confidence            445566788999999999999988     88888888864443333  233322  2444455555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=5e-19  Score=186.31  Aligned_cols=406  Identities=11%  Similarity=-0.018  Sum_probs=251.5

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI--ASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      .+..++...|++++|+.++++++  +|.+...+..+  |.++..+|++++|++.++++....+.+.              
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--------------  136 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--------------  136 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------------
Confidence            56677778899999999999999  55544444444  7799999999999999999876555431              


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                  ..+..++.++...+++++|++.+++++..+|++... ..++.++..+++..+|++.+++++..+|++.
T Consensus       137 ------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        137 ------------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             ------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence                        113345667777777778888777777777775443 3445555556666667777777777777777


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHH---------hhccH---HHHHHHHHhcC
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHL---------KQEEH---QEAFDLIKNLE  234 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~~~~---~~A~~~l~~~~  234 (507)
                      ..+..+..++-..|-...|.+..+..     +..-......+  ...+.-..         ..++|   |.|+..+..+.
T Consensus       204 e~~~~~~~~l~~~~~~~~a~~l~~~~-----p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~  278 (822)
T PRK14574        204 EVLKNHLEILQRNRIVEPALRLAKEN-----PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL  278 (822)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHhC-----ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence            76665555555666666665544321     00000000000  00111111         11222   33444333332


Q ss_pred             ---CCChHH--HHH-----HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHH
Q psy12000        235 ---PSVPQE--YIL-----KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYL  304 (507)
Q Consensus       235 ---~~~~~~--~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~  304 (507)
                         +..|..  ...     +-.++...       +.+++++..|+.+...... -+..++.+.|..|...++.++|+.+|
T Consensus       279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r-------~r~~~vi~~y~~l~~~~~~-~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        279 TRWGKDPEAQADYQRARIDRLGALLVR-------HQTADLIKEYEAMEAEGYK-MPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             hhccCCCccchHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence               233322  111     11122222       3345666666655533321 12235567888888888888888888


Q ss_pred             HHhhhhcC----CCchH--HHHHHHHHHhhCCHHHHHHHHHhhcccCC-----------Cchhhh---hhhhcccCccch
Q psy12000        305 SSIKSYYT----SDDSF--NFNFAQAKCALGQYKEAEEMFLLVQNEGL-----------KNDYVY---ISHLTKCSPSRA  364 (507)
Q Consensus       305 ~~~~~~~~----~~~~~--~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~---~~~l~~~~~~~~  364 (507)
                      +.+....|    .++..  ...|-.+|..++++++|..+++++.+..|           .++.-|   ...++.++...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            87765432    11122  34567788888888888888887764211           111222   122344444445


Q ss_pred             hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000        365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD  444 (507)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~  444 (507)
                      +...|.+.+.++..         .-+.+..-.+.++.++..+|++.+|...++.++..+|++..+....|.++..+|+++
T Consensus       431 dl~~Ae~~le~l~~---------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~  501 (822)
T PRK14574        431 DLPTAQKKLEDLSS---------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH  501 (822)
T ss_pred             CHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence            55555444333211         011111223456778888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCchhhhhHH
Q psy12000        445 VSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       445 ~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      +|....+.+++.+|+++.+..+.
T Consensus       502 ~A~~~~~~l~~~~Pe~~~~~~l~  524 (822)
T PRK14574        502 QMELLTDDVISRSPEDIPSQELD  524 (822)
T ss_pred             HHHHHHHHHHhhCCCchhHHHHH
Confidence            99999999999999999876543

>PLN03077 Protein ECB2; Provisional

Probab=99.87  E-value=3.8e-18  Score=186.41  Aligned_cols=357  Identities=12%  Similarity=-0.014  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHHHHHHHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIALNLKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~~a~~~~~  180 (507)
                      +..+...|.+.|++++|..+|+++..  | +...|..+...|.+.|++++|+++|+++..  ..|+......++ ....+
T Consensus       326 ~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll-~a~~~  401 (857)
T PLN03077        326 CNSLIQMYLSLGSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-SACAC  401 (857)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-HHHhc
Confidence            56677788888888888888887642  3 344566777788888888888888887754  346665432222 23346


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                      .|+.+.|...++.+.+...    .....++..|...|.+.|++++|.+.++++...+...|......+...|+       
T Consensus       402 ~g~~~~a~~l~~~~~~~g~----~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~-------  470 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGL----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR-------  470 (857)
T ss_pred             cchHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC-------
Confidence            6777777777776643111    11234566788888999999999999888766555444433333333332       


Q ss_pred             HHHHHHHHHHhCCCcccccch----------------------------------hhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000        261 VKAAQALFQLVGSSQSECDTV----------------------------------PGRQCMASSFFLLRSFKDVILYLSS  306 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~la~~~~~~~~~~~Ai~~~~~  306 (507)
                      .++|+.+|+..... ..|+..                                  .....|...|.+.|+.++|...|+.
T Consensus       471 ~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~  549 (857)
T PLN03077        471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS  549 (857)
T ss_pred             HHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence            23444444332211 111110                                  0112355788999999999998887


Q ss_pred             hhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHH
Q psy12000        307 IKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEY  385 (507)
Q Consensus       307 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  385 (507)
                      .   .| +...+..+...|.+.|+.++|++.|+++.+.+. ++...|...+ .++.+.|..++|++++..+.....    
T Consensus       550 ~---~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~g~v~ea~~~f~~M~~~~g----  620 (857)
T PLN03077        550 H---EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEEKYS----  620 (857)
T ss_pred             c---CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhcChHHHHHHHHHHHHHHhC----
Confidence            6   33 444556688999999999999999999875432 3444444433 355667788888777766531100    


Q ss_pred             HHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000        386 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  465 (507)
Q Consensus       386 ~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~  465 (507)
                         +.-......++...+...|++++|.+.++++ ...|+...+...++ ++..-|+.+.+....++++++.|+++..+.
T Consensus       621 ---i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~  695 (857)
T PLN03077        621 ---ITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLN-ACRIHRHVELGELAAQHIFELDPNSVGYYI  695 (857)
T ss_pred             ---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence               0000011123444566679999999999987 35677655555454 567788999999999999999999999999


Q ss_pred             HHHhhhhhcCChHHHHHHHHHHHH
Q psy12000        466 LKACNTYKLFTSRAAENQLKPILV  489 (507)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~  489 (507)
                      ++++++...+..+.+....+...+
T Consensus       696 ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        696 LLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999988887777775555543

>KOG1126|consensus

Probab=99.86  E-value=4.1e-20  Score=180.13  Aligned_cols=285  Identities=18%  Similarity=0.127  Sum_probs=214.6

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc--------chHHHHHHhcC
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT--------RLSFHLSHKLG   84 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~~~~   84 (507)
                      |+....+=+.++|+..|++.-...++...+...+|+.|+.+++|++|.++|+.+.+..+..        .++.++-    
T Consensus       326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq----  401 (638)
T KOG1126|consen  326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ----  401 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH----
Confidence            4444455667899999999777778888888899999999999999999999875433221        0222221    


Q ss_pred             ChhHHHHH-HHHH---hhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000         85 DEKSLMEY-HQKL---EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus        85 ~~~~~~~~-~~~l---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                      +.-++... ...+   +..|+.+-.+|.+|-.+++++.|+++|+++++.+|.+.-+|..+|-=+.....+|+|...|+.+
T Consensus       402 ~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A  481 (638)
T KOG1126|consen  402 DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA  481 (638)
T ss_pred             hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence            11111111 1112   2356778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCC
Q psy12000        161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSV  237 (507)
Q Consensus       161 l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~  237 (507)
                      +..+|.+-.|++-+|.+++++++++.|+-.|+++.     ...|.+....-.+|.++.+.|+.|+|+.++++.   +|.+
T Consensus       482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-----~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-----EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh-----cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            99999888877777777777777777777776653     234444444555666666666666666666542   3333


Q ss_pred             hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchH
Q psy12000        238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSF  317 (507)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~  317 (507)
                      |                                           ..++..|.+++..++|++|+..++.++..-|++..+
T Consensus       557 ~-------------------------------------------l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v  593 (638)
T KOG1126|consen  557 P-------------------------------------------LCKYHRASILFSLGRYVEALQELEELKELVPQESSV  593 (638)
T ss_pred             c-------------------------------------------hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence            2                                           223456888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                      ++.+|.+|.+.|+.+.|+..|-=+.+.+|...
T Consensus       594 ~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  594 FALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            99999999999999999999998887776543

>KOG1155|consensus

Probab=99.85  E-value=8.8e-18  Score=156.94  Aligned_cols=314  Identities=13%  Similarity=0.108  Sum_probs=227.5

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +.++.++......++++.-++..+.. .|.+.-+-..+|.+.+...++|+|++.|+.+.+.+|-...-+-+.+.+++-..
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~  310 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence            35667777777899999999999888 78888888899999999999999999999999999987765555555544433


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                      +... ...+-.    .+...+...|+.---+|+.|.-.++.++|+..|++.   +|.....|.+.|.-++.+.....+..
T Consensus       311 ~~sk-Ls~LA~----~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  311 DKSK-LSYLAQ----NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             hhHH-HHHHHH----HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence            3211 111111    111233444555555778888899999999998864   55555677777877777776666666


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                      .|..|+++         .|....+|+.||.+|..++-.-=|+-||+++....|+|+..+..||.||.+.++.++|+.+|+
T Consensus       386 sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  386 SYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             HHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            66666542         233467788899999999999999999999999999998888889999999999999999999


Q ss_pred             hhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q psy12000        340 LVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI  419 (507)
Q Consensus       340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~  419 (507)
                      +++.....+...+                                            ..++..|-..+++++|..+|++.
T Consensus       457 rai~~~dte~~~l--------------------------------------------~~LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  457 RAILLGDTEGSAL--------------------------------------------VRLAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHhccccchHHH--------------------------------------------HHHHHHHHHHHhHHHHHHHHHHH
Confidence            8864332111111                                            12233445556778888888877


Q ss_pred             hh-------cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000        420 LL-------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG  492 (507)
Q Consensus       420 l~-------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                      ++       ..|+...+...||.-+.+.+++++|-.....++.-.|                 .-+.+.+.+++|+..--
T Consensus       493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------------ECEEAKALLREIRKIQA  555 (559)
T ss_pred             HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHHhcC
Confidence            75       5677777888899999999999999877766655422                 23566667777766533

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.85  E-value=8.7e-18  Score=179.33  Aligned_cols=450  Identities=10%  Similarity=0.002  Sum_probs=304.1

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccc---hHHHHHHhcC
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNP--PEDTEFNIASCYFYLGMYLQANQILEKVPPSR--AKTR---LSFHLSHKLG   84 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~---~~~~~~~~~~   84 (507)
                      +-..+...|++++|++.|+.+....|.  +...+..+..++...++++.|..++.......  +...   .+.....+.+
T Consensus        93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g  172 (697)
T PLN03081         93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG  172 (697)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence            445577889999999999998765443  34567778888889999999998887654321  1111   2223333333


Q ss_pred             ChhHHHHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         85 DEKSLMEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        85 ~~~~~~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      ..+.+......+.. +...+..+...|.+.|++++|+.+|++++...+. +...+..+..++...|+.+.+.+++..+++
T Consensus       173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~  252 (697)
T PLN03081        173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK  252 (697)
T ss_pred             CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33333333322221 1222777888889999999999999998876532 234455566677888999999888887775


Q ss_pred             cC-CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--CChH
Q psy12000        163 QK-PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP--SVPQ  239 (507)
Q Consensus       163 ~~-p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~--~~~~  239 (507)
                      .. ..+...++.+...+.+.|+.++|...|+.+        .+.+...|..++..|.+.|++++|+.++.++..  ..|+
T Consensus       253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m--------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM--------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC--------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            43 223445666667778889999999888765        223446788899999999999999999987621  1222


Q ss_pred             --HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchH
Q psy12000        240 --EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSF  317 (507)
Q Consensus       240 --~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~  317 (507)
                        .+.....++...|       .+++|.+++..+......++. ..+..|...|.+.|++++|..+|+.+.+  |+- ..
T Consensus       325 ~~t~~~ll~a~~~~g-------~~~~a~~i~~~m~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~-~t  393 (697)
T PLN03081        325 QFTFSIMIRIFSRLA-------LLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPR--KNL-IS  393 (697)
T ss_pred             HHHHHHHHHHHHhcc-------chHHHHHHHHHHHHhCCCCCe-eehHHHHHHHHHCCCHHHHHHHHHhCCC--CCe-ee
Confidence              2322223333333       445666666544333222222 2344688999999999999999998764  333 45


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHH
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ  396 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  396 (507)
                      +..+...|.+.|+.++|++.|+++...+. ++...|.. +..++...|..++|.+++..+.....       +.-.....
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-ll~a~~~~g~~~~a~~~f~~m~~~~g-------~~p~~~~y  465 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA-VLSACRYSGLSEQGWEIFQSMSENHR-------IKPRAMHY  465 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHhcC-------CCCCccch
Confidence            56689999999999999999999875433 34444444 34456677888888877766532100       00000011


Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      .++...+...|++++|.+.++++ ...|+... +..+..++...|+.+.|...+++.++..|+++..++.+..++...+.
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRA-PFKPTVNM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            22334556679999999999875 34455443 44455678899999999999999999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHh
Q psy12000        477 SRAAENQLKPILVS  490 (507)
Q Consensus       477 ~~~~~~~~~~~~~~  490 (507)
                      .+.|...++.+.+.
T Consensus       544 ~~~A~~v~~~m~~~  557 (697)
T PLN03081        544 QAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHc
Confidence            88888877776654

>KOG0624|consensus

Probab=99.84  E-value=1.3e-18  Score=156.56  Aligned_cols=333  Identities=14%  Similarity=0.109  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +.++.+|.-+...|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+.-+++++.+.|+..-|-.-.+.++++
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            34889999999999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH--HHHHHhhhccCcH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA--VVQVTIGQDTGSR  258 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~~~~g~~~~~~  258 (507)
                      +|..++|+..|..+++.  ........++...++.+--                     .+.+..  .....-|+     
T Consensus       119 ~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e---------------------~~~l~~ql~s~~~~GD-----  170 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQE---------------------HWVLVQQLKSASGSGD-----  170 (504)
T ss_pred             cccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHH---------------------HHHHHHHHHHHhcCCc-----
Confidence            89999988888876430  0001111122222111100                     011110  11111222     


Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                        ...++++...+.+..  +-..+-+...+.||...|+...||..++.+.++..++...+|..+.+++..|+.+.++...
T Consensus       171 --~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i  246 (504)
T KOG0624|consen  171 --CQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI  246 (504)
T ss_pred             --hhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence              234444444333221  1112224457899999999999999999998888888888999999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR  418 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~  418 (507)
                      +.+++.+|+....|.                  .|.++....+.+...              .-....++|.+++...++
T Consensus       247 RECLKldpdHK~Cf~------------------~YKklkKv~K~les~--------------e~~ie~~~~t~cle~ge~  294 (504)
T KOG0624|consen  247 RECLKLDPDHKLCFP------------------FYKKLKKVVKSLESA--------------EQAIEEKHWTECLEAGEK  294 (504)
T ss_pred             HHHHccCcchhhHHH------------------HHHHHHHHHHHHHHH--------------HHHHhhhhHHHHHHHHHH
Confidence            999988776543221                  111111100111000              111233678888888888


Q ss_pred             HhhcCCchhhhHH----HHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        419 ILLDHKDLLALNV----YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       419 ~l~~~p~~~~~~~----~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +++.+|..+.+.+    .+..||.+-|++-+|+..+..+|+++|++..++--++..++-...++.|+.+|++..++.|.|
T Consensus       295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            8888887554332    356778888888888888888888888888888878877777667888888888888888877


Q ss_pred             ccC
Q psy12000        495 VRF  497 (507)
Q Consensus       495 ~~~  497 (507)
                      -+.
T Consensus       375 ~~~  377 (504)
T KOG0624|consen  375 TRA  377 (504)
T ss_pred             HHH
Confidence            443

>KOG1174|consensus

Probab=99.84  E-value=2.5e-17  Score=151.76  Aligned_cols=395  Identities=14%  Similarity=0.130  Sum_probs=283.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCC--------------------CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLP--------------------NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR   70 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~--------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~   70 (507)
                      ++.+..+....|..|.+.|..++++.                    |.+.+.....+.||-..|+-+.|+.....+++..
T Consensus        48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~  127 (564)
T KOG1174|consen   48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL  127 (564)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence            34566667778888888888887642                    3345677899999999999999999998887632


Q ss_pred             cccc---hHHHHHHhcC-ChhHHHHHHHHHhhcH--------------------------------HH---H--HHHHHH
Q psy12000         71 AKTR---LSFHLSHKLG-DEKSLMEYHQKLEDSL--------------------------------EE---Q--LCLASI  109 (507)
Q Consensus        71 ~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~--------------------------------~~---~--~~la~~  109 (507)
                      ...+   ++..+...-+ ..+....+-..+.++|                                .+   .  ..+|.+
T Consensus       128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~  207 (564)
T KOG1174|consen  128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM  207 (564)
T ss_pred             cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence            2221   2222221111 1111111111111100                                01   1  233444


Q ss_pred             HHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000        110 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  189 (507)
Q Consensus       110 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~  189 (507)
                      +....-+..+..++-+..+.-|++...+..+|.|++..|++++|+..|++....||....+.-..|.++.+.|++++-..
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence            43333444455556666777899999999999999999999999999999999999999999888988888999887766


Q ss_pred             hhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000        190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA  266 (507)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  266 (507)
                      ....+..     ..+...+-|+--+...+..+++..|+....+   +++.+...++++|..+..+++...+.-+|..|+.
T Consensus       288 L~~~Lf~-----~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  288 LMDYLFA-----KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             HHHHHHh-----hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            5555432     2334555677777888889999999887764   5777778899999999999888766666666654


Q ss_pred             HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH-HHHHh-hCCHHHHHHHHHhhccc
Q psy12000        267 LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA-QAKCA-LGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~~~~~  344 (507)
                      +         .|-.+..+..|-.+|...|++.+|+..-+.+....|.+...+-.+| .+++. -..-++|.+.+++.+..
T Consensus       363 L---------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~  433 (564)
T KOG1174|consen  363 L---------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI  433 (564)
T ss_pred             c---------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence            2         1222344567889999999999999888887777777766666676 44444 45678999999998876


Q ss_pred             CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000        345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK  424 (507)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p  424 (507)
                      .|.    |+.                                        ....++..+...|+++++|+.+++.+...|
T Consensus       434 ~P~----Y~~----------------------------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~  469 (564)
T KOG1174|consen  434 NPI----YTP----------------------------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFP  469 (564)
T ss_pred             CCc----cHH----------------------------------------HHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence            652    110                                        112223456667999999999999999999


Q ss_pred             chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000        425 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       425 ~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      |.. ++..+|.++...+.+++|++.|..++.++|++..++
T Consensus       470 D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  470 DVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             ccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            854 677899999999999999999999999999998873

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.83  E-value=5.3e-17  Score=173.35  Aligned_cols=417  Identities=8%  Similarity=-0.046  Sum_probs=291.4

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhc
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHL--PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKL   83 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~   83 (507)
                      .++..+-.++...++++.|...+..+.+.  .|+ ..++..+..+|.+.|++++|.++|++.+..+... ..+.......
T Consensus       124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~  202 (697)
T PLN03081        124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA  202 (697)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC
Confidence            34445667777889999999998888764  453 4677788899999999999999999886532222 1233333334


Q ss_pred             CChhHHHHHHHHH-hh----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         84 GDEKSLMEYHQKL-ED----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDH-KDLLALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        84 ~~~~~~~~~~~~l-~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                      ++.+.+....... ..    ....+..+...+...|....+.+++..+++.. ..+..++..+..+|.+.|++++|.++|
T Consensus       203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf  282 (697)
T PLN03081        203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF  282 (697)
T ss_pred             cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence            4544444433333 21    11225556667777888999998888887765 235566777888999999999999998


Q ss_pred             HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---
Q psy12000        158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---  234 (507)
Q Consensus       158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---  234 (507)
                      +++.   +.+..+++.+...+.+.|+.++|...|..+.+..   ..| +...+..+...+.+.|++++|...+..+.   
T Consensus       283 ~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        283 DGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            8763   4456678878788888999999999998875311   111 23467778888999999999988876552   


Q ss_pred             -CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc--
Q psy12000        235 -PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY--  311 (507)
Q Consensus       235 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~--  311 (507)
                       +.+...+......|...|       .+++|.++|+.....    + ...|..|...|.+.|+.++|+++|+++....  
T Consensus       356 ~~~d~~~~~~Li~~y~k~G-------~~~~A~~vf~~m~~~----d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~  423 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWG-------RMEDARNVFDRMPRK----N-LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA  423 (697)
T ss_pred             CCCCeeehHHHHHHHHHCC-------CHHHHHHHHHhCCCC----C-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence             122222222333344433       467788888766532    1 2345678899999999999999999887644  


Q ss_pred             CCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc-CC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000        312 TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE-GL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL  389 (507)
Q Consensus       312 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  389 (507)
                      |+.. .+..+..++.+.|+.++|.++|+.+.+. .. ++...| ..+.+++.+.|+.++|.+++.+++-.+....+.   
T Consensus       424 Pd~~-T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~---  498 (697)
T PLN03081        424 PNHV-TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA---  498 (697)
T ss_pred             CCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH---
Confidence            4433 3455778899999999999999988632 22 222333 335667778899999988887765444322211   


Q ss_pred             hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                              .+-......|+++.|...+++++...|++...+..+..+|.+.|++++|.++++..-+.
T Consensus       499 --------~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        499 --------ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             --------HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                    12224445689999999999999999999888888999999999999999999877654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.83  E-value=1.5e-16  Score=172.19  Aligned_cols=427  Identities=8%  Similarity=-0.021  Sum_probs=211.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhc
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED--TEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKL   83 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~   83 (507)
                      ..+..+=..+...|++++|++.|+++.+.+.-.++  .+..+...+...|..++|...++.....+... ..++......
T Consensus       371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~  450 (1060)
T PLN03218        371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS  450 (1060)
T ss_pred             hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence            33444444555678888888888888766533322  23335556667788888888887765411111 0222222233


Q ss_pred             CChhHHHHHHHHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         84 GDEKSLMEYHQKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                      ++.+.+......+.+     +...+..+...|.+.|+.++|.++|+++...... +...+..+...|.+.|++++|+++|
T Consensus       451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            333333333333221     1122555666666666677777666666655421 3445555666666666777776666


Q ss_pred             HHHHh--cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000        158 AMYLA--QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP  235 (507)
Q Consensus       158 ~~~l~--~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~  235 (507)
                      +.+..  ..|+. ..++.+...+.+.|+.++|...+..+.... ....| ....+..+...|.+.|++++|.+++..+..
T Consensus       531 ~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~-~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        531 GIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66653  23442 334444445556666666666666553210 00111 123455566666666666666666665532


Q ss_pred             C----ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000        236 S----VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY  311 (507)
Q Consensus       236 ~----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~  311 (507)
                      .    ++..+......+...       +.+++|..+|+........|+. ..+..+...+.+.|++++|+++++.+.+..
T Consensus       608 ~gi~p~~~tynsLI~ay~k~-------G~~deAl~lf~eM~~~Gv~PD~-~TynsLI~a~~k~G~~eeA~~l~~eM~k~G  679 (1060)
T PLN03218        608 YNIKGTPEVYTIAVNSCSQK-------GDWDFALSIYDDMKKKGVKPDE-VFFSALVDVAGHAGDLDKAFEILQDARKQG  679 (1060)
T ss_pred             cCCCCChHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            2    112222222222222       2345666666554433333332 223345566666666666666666655433


Q ss_pred             CC-CchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCc---HHHHHHH
Q psy12000        312 TS-DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDE---KSLMEYH  386 (507)
Q Consensus       312 ~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  386 (507)
                      .. +...+..+..+|.+.|++++|.+.|+++..... ++...|. .+..++.+.|+.++|.+++.++...   ++...+.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN-~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~  758 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN-ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS  758 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            21 223344456666666666666666666543221 2222222 2344555555556555555443211   1111110


Q ss_pred             HHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh--cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        387 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       387 ~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~--~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                                 .+-..+...|++++|..++.++.+  ..|+.......++.|.   +++++|.+..+..+..++.
T Consensus       759 -----------sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~---~~y~ka~~l~~~v~~f~~g  819 (1060)
T PLN03218        759 -----------ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL---RRFEKACALGEPVVSFDSG  819 (1060)
T ss_pred             -----------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhcc
Confidence                       011223334566666666666654  2344444443344332   2455555555544444433

>KOG2076|consensus

Probab=99.83  E-value=1.5e-17  Score=167.15  Aligned_cols=343  Identities=15%  Similarity=0.018  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      .+..|...+..|++++|..++.++|..+|.++.+++.||.||..+|+.++|....-.+--++|.+..-|...+....++|
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            67889999999999999999999999999999999999999999999999999999999999999998988899999999


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH------HHH--HHHHHhhhc
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI------LKA--VVQVTIGQD  254 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~------~~~--~~~~~~g~~  254 (507)
                      ++++|.-.+.++++     ..|...+..+..+.+|.++|++..|.+.+.++.+.+|..-+      .+.  ..+...++ 
T Consensus       222 ~i~qA~~cy~rAI~-----~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~-  295 (895)
T KOG2076|consen  222 NINQARYCYSRAIQ-----ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE-  295 (895)
T ss_pred             cHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH-
Confidence            99999999998763     44555667788899999999999999999887665552211      111  11111111 


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh--hcCCCchH---------------
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS--YYTSDDSF---------------  317 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~--~~~~~~~~---------------  317 (507)
                           . +.|.+.+........+....+...-++.++.+..+++.|+........  ..+++..+               
T Consensus       296 -----~-e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~  369 (895)
T KOG2076|consen  296 -----R-ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE  369 (895)
T ss_pred             -----H-HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence                 1 344444432221111111222233578888899999999875543322  12222111               


Q ss_pred             ------------HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHH
Q psy12000        318 ------------NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEY  385 (507)
Q Consensus       318 ------------~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  385 (507)
                                  ...++.+..+.+...+++.++....+..                                 ..+...+
T Consensus       370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~---------------------------------~~d~~dL  416 (895)
T KOG2076|consen  370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW---------------------------------VSDDVDL  416 (895)
T ss_pred             CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---------------------------------hhhhHHH
Confidence                        1112222222223333333222111100                                 0111111


Q ss_pred             HHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000        386 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       386 ~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      +..          ++..+...|+|.+|+.+|..+....+.. ..+++.+|.||..+|.+++|+.+|++++...|++..+.
T Consensus       417 ~~d----------~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  417 YLD----------LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             HHH----------HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence            211          2234455588999999999888877654 45778889999999999999999999999999999988


Q ss_pred             hHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCCCcc
Q psy12000        465 NLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGAD  502 (507)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (507)
                      -.++.++..+++++.|-..+..|.  .|.+...+..+|
T Consensus       487 i~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~~a~  522 (895)
T KOG2076|consen  487 ITLASLYQQLGNHEKALETLEQII--NPDGRNAEACAW  522 (895)
T ss_pred             hhHHHHHHhcCCHHHHHHHHhccc--CCCccchhhccc
Confidence            889999998888888877777776  333334444444

>PLN03077 Protein ECB2; Provisional

Probab=99.82  E-value=6.8e-17  Score=176.60  Aligned_cols=412  Identities=11%  Similarity=0.007  Sum_probs=268.3

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC------------------------
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP------------------------   67 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~------------------------   67 (507)
                      +-..|...|+++.|...|+++.+.   +...|..+...|.+.|++++|+..|.+..                        
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE  304 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence            445556666666666666665432   22345556666666666666666655431                        


Q ss_pred             -----------CCc--cccc---hHHHHHHhcCChhHHHHHHHHHh-hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000         68 -----------PSR--AKTR---LSFHLSHKLGDEKSLMEYHQKLE-DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH  130 (507)
Q Consensus        68 -----------~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  130 (507)
                                 +..  +...   .+.....+.++.+.+....+.+. .+...+..+...|.+.|++++|+++|+++....
T Consensus       305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g  384 (857)
T PLN03077        305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN  384 (857)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence                       110  1111   22223333444444444433332 222237788899999999999999999987665


Q ss_pred             --CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChh
Q psy12000        131 --KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT-SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIP  207 (507)
Q Consensus       131 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~  207 (507)
                        |+...... +-..+.+.|++++|.+++..+.+.... +...++.+...+.+.|+.++|...|+.+.        ..+.
T Consensus       385 ~~Pd~~t~~~-ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------~~d~  455 (857)
T PLN03077        385 VSPDEITIAS-VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--------EKDV  455 (857)
T ss_pred             CCCCceeHHH-HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCCe
Confidence              66654443 334778899999999999998876432 33456666677788899999998887652        1233


Q ss_pred             HhHHHHHHHHHhhccHHHHHHHHHhcCC-CChHHHHHHH--HHHHHhhhc----------------------------cC
Q psy12000        208 ESRLNLVIYHLKQEEHQEAFDLIKNLEP-SVPQEYILKA--VVQVTIGQD----------------------------TG  256 (507)
Q Consensus       208 ~~~~~l~~~~~~~~~~~~A~~~l~~~~~-~~~~~~~~~~--~~~~~~g~~----------------------------~~  256 (507)
                      ..|..++..|...|++++|+..+.++.. ..|+......  .+....|..                            ..
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~  535 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV  535 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence            4678888899999999999998877532 1222211111  111111111                            11


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--cCCCchHHHHHHHHHHhhCCHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--YTSDDSFNFNFAQAKCALGQYKEA  334 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A  334 (507)
                      ..+.+++|...|+.. .    + ...+|..+...|.+.|+.++|+++|+++.+.  .|+... +..+-.++.+.|+.++|
T Consensus       536 k~G~~~~A~~~f~~~-~----~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        536 RCGRMNYAWNQFNSH-E----K-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQG  608 (857)
T ss_pred             HcCCHHHHHHHHHhc-C----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHH
Confidence            123456777777654 1    1 2344666889999999999999999988764  455543 34466789999999999


Q ss_pred             HHHHHhhc-ccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000        335 EEMFLLVQ-NEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  412 (507)
Q Consensus       335 ~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A  412 (507)
                      ..+|+.+. .... ++...| ..+.+++.+.|+.++|.+++.++.-.++...+.           .+-..+...++.+.|
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~-----------aLl~ac~~~~~~e~~  676 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHY-ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG-----------ALLNACRIHRHVELG  676 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH-----------HHHHHHHHcCChHHH
Confidence            99999987 2222 333344 446778888899999998888875333322111           111233345788888


Q ss_pred             HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000        413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  454 (507)
Q Consensus       413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l  454 (507)
                      ....+++++..|++...+..++.+|...|++++|.++.+.--
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            889999999999999999999999999999999998877654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.81  E-value=7.3e-20  Score=173.40  Aligned_cols=264  Identities=17%  Similarity=0.074  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      .+.+|.+++..|++++|++++++.+...  |+++..+..+|.+...++++++|+..+++++..+|.++..+..++.+ ..
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            4567999999999999999997765554  78889998999999999999999999999998888876655444444 45


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                      .+++++|...+....+    .  ...+..+..++.++...++++++...+.++.                          
T Consensus        90 ~~~~~~A~~~~~~~~~----~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~--------------------------  137 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYE----R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE--------------------------  137 (280)
T ss_dssp             ----------------------------------H-HHHTT-HHHHHHHHHHHH--------------------------
T ss_pred             cccccccccccccccc----c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH--------------------------
Confidence            5555555544433211    0  1112223333344444555555544443321                          


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                                  .....++....+..+|.++.+.|++++|+.+++++++..|+++.+...++.++...|+++++.+.+..
T Consensus       138 ------------~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~  205 (280)
T PF13429_consen  138 ------------ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKR  205 (280)
T ss_dssp             ------------H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ------------hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence                        00000111222345678888888888888888888888888877777788888888888887777765


Q ss_pred             hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000        341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL  420 (507)
Q Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l  420 (507)
                      .....+.+...                                            +..++.++...|++++|+.+|++++
T Consensus       206 ~~~~~~~~~~~--------------------------------------------~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  206 LLKAAPDDPDL--------------------------------------------WDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHH-HTSCCH--------------------------------------------CHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHCcCHHHH--------------------------------------------HHHHHHHhccccccccccccccccc
Confidence            54222111111                                            1223456666688888888888888


Q ss_pred             hcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000        421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  455 (507)
Q Consensus       421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~  455 (507)
                      ..+|+++.+...+|.++...|++++|..+++++++
T Consensus       242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            88888888888888888888888888888887764

>KOG1155|consensus

Probab=99.81  E-value=3.5e-16  Score=146.33  Aligned_cols=356  Identities=12%  Similarity=0.004  Sum_probs=241.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP--TSRIALNLKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~~~a~~~~~  180 (507)
                      ++..|.++.+.|...+|++.|..++...|.+-.+|..|+.+.-.       ++........-|  .+...-..+..++..
T Consensus       167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999888766544       333333333334  222222223333333


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH---HHHHHHHHHHHhhhccCc
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ---EYILKAVVQVTIGQDTGS  257 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~g~~~~~  257 (507)
                      ....+++..-.+....    .--+..+...-..|.+...+.++|+|+..|+.+...+|-   +.-....++....+.   
T Consensus       240 l~q~~e~~~k~e~l~~----~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~---  312 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSS----VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK---  312 (559)
T ss_pred             HHHHHHHHHHHHHHHh----ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh---
Confidence            3455555544444321    112334445556788888999999999999988555542   211122222222211   


Q ss_pred             HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000        258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM  337 (507)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  337 (507)
                      ..----|...++ +..-.  +.+   .-.+|+.|...++.++|+.||+++++.+|....++..+|.-|..+++...|++.
T Consensus       313 skLs~LA~~v~~-idKyR--~ET---CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  313 SKLSYLAQNVSN-IDKYR--PET---CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             HHHHHHHHHHHH-hccCC--ccc---eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence            111112443332 21111  111   123688899999999999999999999999888888899999999999999999


Q ss_pred             HHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy12000        338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK  417 (507)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~  417 (507)
                      |+++++.+|.+--.|-+ ||++|...+-+.-|...+++...-.         +....-+..+|..+...++.++||++|+
T Consensus       387 YRrAvdi~p~DyRAWYG-LGQaYeim~Mh~YaLyYfqkA~~~k---------PnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  387 YRRAVDINPRDYRAWYG-LGQAYEIMKMHFYALYYFQKALELK---------PNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             HHHHHhcCchhHHHHhh-hhHHHHHhcchHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999988876544433 5666666665565655555432210         0011123456777777789999999999


Q ss_pred             HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh-------cCCCchhhhhHHHhhhhhcCChHHHHHHHHHHH
Q psy12000        418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA-------QKPTSRIALNLKACNTYKLFTSRAAENQLKPIL  488 (507)
Q Consensus       418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~-------~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  488 (507)
                      +++...-.+..+++.+|.+|.++++.++|..+|++.++       +.|+...+.-.++.-.+..++.+.|.-=....+
T Consensus       457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            99988777778889999999999999999999999998       567777777788888888888888776333333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.80  E-value=1.8e-19  Score=170.67  Aligned_cols=256  Identities=18%  Similarity=0.187  Sum_probs=85.6

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhc-C-CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHHHHH
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRH-L-PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSFHLS   80 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~   80 (507)
                      +..+.+|.+++..|++++|++++.+.+. . .|+++++|..+|.+...+|++++|+..++++...+..+.    .+..+ 
T Consensus         9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-   87 (280)
T PF13429_consen    9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            3445679999999999999999966554 4 488889999999999999999999999998865433321    11111 


Q ss_pred             HhcCChhH-HHHHHHHHhhc--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000         81 HKLGDEKS-LMEYHQKLEDS--LEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus        81 ~~~~~~~~-~~~~~~~l~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~  155 (507)
                      ...++.+. +..+....+..  +..+.....++...|+++++...++++....  |+++.++..+|.++.+.|++++|++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            11111111 11111111111  1113334445555556666655555544433  3445555555556666666666666


Q ss_pred             HHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000        156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP  235 (507)
Q Consensus       156 ~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~  235 (507)
                      .++++++.+|+++                                       +++..++.+++..|+++++...+.....
T Consensus       168 ~~~~al~~~P~~~---------------------------------------~~~~~l~~~li~~~~~~~~~~~l~~~~~  208 (280)
T PF13429_consen  168 DYRKALELDPDDP---------------------------------------DARNALAWLLIDMGDYDEAREALKRLLK  208 (280)
T ss_dssp             HHHHHHHH-TT-H---------------------------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCH---------------------------------------HHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            6666655555554                                       3445566667777777776655543210


Q ss_pred             CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000        236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD  315 (507)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~  315 (507)
                      ..                                     +.++.   .+..+|.++...|++++|+.+++++....|+++
T Consensus       209 ~~-------------------------------------~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  209 AA-------------------------------------PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             H--------------------------------------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HC-------------------------------------cCHHH---HHHHHHHHhcccccccccccccccccccccccc
Confidence            00                                     00111   123579999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        316 SFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       316 ~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                      .++..+|.++...|++++|..++.++.
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999998875

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=1.4e-17  Score=172.04  Aligned_cols=191  Identities=15%  Similarity=0.078  Sum_probs=159.5

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc---------HHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM---------YLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      .+++++|+..|+++++.+|+++.++..+|.++...+.         +++|+..++++....+..                
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~----------------  337 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN----------------  337 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC----------------
Confidence            3567899999999999999999999999998875543         788888888776544432                


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                                +..+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|.++.
T Consensus       338 ----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        338 ----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence                      2336678999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ  239 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~  239 (507)
                      +....+.+++..|++++|+..++++..    ..+|..+.++.++|.++..+|++++|...+.++.+..|.
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~----~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRS----QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHH----hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            766666667778899999988877542    234556778888999999999999999988877665554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.79  E-value=1.6e-15  Score=164.42  Aligned_cols=417  Identities=13%  Similarity=0.053  Sum_probs=288.4

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcc--ccc---hHHHHHHhcCChh
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRA--KTR---LSFHLSHKLGDEK   87 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~   87 (507)
                      -..+...|..++|...|..+..  |+ ...|..+-..+...|++++|..++++..+...  ...   .+.....+.++.+
T Consensus       413 i~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd  489 (1060)
T PLN03218        413 FKACKKQRAVKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD  489 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence            3456678999999999988764  54 45677788889999999999999988754322  111   3334444455555


Q ss_pred             HHHHHHHHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000         88 SLMEYHQKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus        88 ~~~~~~~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                      .+........+     +...+..+...|.+.|++++|+.+|+++....  |+ ...+..+...+.+.|++++|.++|+++
T Consensus       490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            55444444332     22337788999999999999999999998764  55 456778889999999999999999999


Q ss_pred             Hh----cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC
Q psy12000        161 LA----QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS  236 (507)
Q Consensus       161 l~----~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~  236 (507)
                      ..    ..|+. ..++.+...+.+.|+.++|...|+.+.+.    ..+..+..+..++..|.+.|++++|..++.++...
T Consensus       569 ~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        569 KAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEY----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            75    35664 45666666788999999999999988642    12224567888999999999999999999887432


Q ss_pred             --ChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc-
Q psy12000        237 --VPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY-  311 (507)
Q Consensus       237 --~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~-  311 (507)
                        .|+...  .....+..       .+.+++|.++++........++. ..+..+..+|.+.|++++|+++|+.+.... 
T Consensus       644 Gv~PD~~TynsLI~a~~k-------~G~~eeA~~l~~eM~k~G~~pd~-~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~  715 (1060)
T PLN03218        644 GVKPDEVFFSALVDVAGH-------AGDLDKAFEILQDARKQGIKLGT-VSYSSLMGACSNAKNWKKALELYEDIKSIKL  715 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence              333222  22222222       34568899998876554444433 345678999999999999999999886543 


Q ss_pred             -CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCCc---HHHHHHH
Q psy12000        312 -TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDE---KSLMEYH  386 (507)
Q Consensus       312 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  386 (507)
                       |+. ..+..+...|.+.|++++|++.|+++...+. ++...|... ..++.+.|+.+.|.+++..+...   ++...+ 
T Consensus       716 ~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL-L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty-  792 (1060)
T PLN03218        716 RPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL-LVASERKDDADVGLDLLSQAKEDGIKPNLVMC-  792 (1060)
T ss_pred             CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH-
Confidence             433 3455689999999999999999999874432 444555443 35667778888887766554321   111110 


Q ss_pred             HHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh--cCCCchhhh
Q psy12000        387 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIAL  464 (507)
Q Consensus       387 ~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~--~~P~~~~a~  464 (507)
                                ..+  +....++|++|....+.++..++..         .....+..++|+..|++.++  ..||..+..
T Consensus       793 ----------nsL--Iglc~~~y~ka~~l~~~v~~f~~g~---------~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~  851 (1060)
T PLN03218        793 ----------RCI--TGLCLRRFEKACALGEPVVSFDSGR---------PQIENKWTSWALMVYRETISAGTLPTMEVLS  851 (1060)
T ss_pred             ----------HHH--HHHHHHHHHHHhhhhhhhhhhhccc---------cccccchHHHHHHHHHHHHHCCCCCCHHHHH
Confidence                      011  1112246888888777666544322         22234456789999998886  469988887


Q ss_pred             hHHHhh
Q psy12000        465 NLKACN  470 (507)
Q Consensus       465 ~~~~~~  470 (507)
                      .+++|.
T Consensus       852 ~vL~cl  857 (1060)
T PLN03218        852 QVLGCL  857 (1060)
T ss_pred             HHHHHh
Confidence            788876

>TIGR00540 hemY_coli hemY protein

Probab=99.79  E-value=5.5e-17  Score=161.65  Aligned_cols=299  Identities=10%  Similarity=-0.004  Sum_probs=208.7

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      .+.-|...+..||++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..+....             
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l-------------  153 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI-------------  153 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch-------------
Confidence            3456888999999999999999999999988888888999999999999999999886443222210             


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                  ......+.++...|++++|...++++++..|+++.++..++.++...|++++|++.+.++.+..+.++
T Consensus       154 ------------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~  221 (409)
T TIGR00540       154 ------------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD  221 (409)
T ss_pred             ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence                        01234578899999999999999999999999999999999999999999999999999998755444


Q ss_pred             HHH---HHHhh-hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHH---
Q psy12000        169 IAL---NLKAC-NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEY---  241 (507)
Q Consensus       169 ~a~---~~~a~-~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~---  241 (507)
                      ..+   ...+. -.+..+..+.....+..+.. ..+...+..+..+..++..+...|++++|.+.+.+.....|+..   
T Consensus       222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~  300 (409)
T TIGR00540       222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS  300 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence            322   11111 11122222222233433321 11111224678899999999999999999999987644444332   


Q ss_pred             --HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCC-CcccccchhhhhHHHHHHHhhcCHHHHHHHHH--HhhhhcCCCch
Q psy12000        242 --ILKAVVQVTIGQDTGSREMVKAAQALFQLVGS-SQSECDTVPGRQCMASSFFLLRSFKDVILYLS--SIKSYYTSDDS  316 (507)
Q Consensus       242 --~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~--~~~~~~~~~~~  316 (507)
                        .+........+       ....+++.++.... .+.+++ ......+|+++++.|++++|.++|+  .+.+..|++..
T Consensus       301 ~~~l~~~~~l~~~-------~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       301 LPLCLPIPRLKPE-------DNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             hHHHHHhhhcCCC-------ChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence              12211111111       11223333322211 111221 1334568999999999999999999  46667777765


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        317 FNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       317 ~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                       ...+|.++.++|+.++|.++|++.+
T Consensus       373 -~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       373 -LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             4579999999999999999999875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.79  E-value=1.3e-16  Score=159.03  Aligned_cols=301  Identities=9%  Similarity=-0.061  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-HHHHHhhhhhhc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-ALNLKACNTYKL  181 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-a~~~~a~~~~~~  181 (507)
                      .+..|.+....|+++.|.+...++....|+..-.+...|.+...+|++++|.++++++.+..|++.. .....+.+.+..
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~  166 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ  166 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence            4677889999999999999999999998987777788899999999999999999999999999864 344468888899


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhhhccCcH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS---VPQEYILKAVVQVTIGQDTGSR  258 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~g~~~~~~  258 (507)
                      |+++.|...++.+.     ...|.++.++..++.+++.+|++++|.+.+.++...   ++....                
T Consensus       167 ~~~~~Al~~l~~l~-----~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~----------------  225 (409)
T TIGR00540       167 NELHAARHGVDKLL-----EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA----------------  225 (409)
T ss_pred             CCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH----------------
Confidence            99999999988765     345777788999999999999999999888765422   222110                


Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CCchHHHHHHHHHHhhCCHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----SDDSFNFNFAQAKCALGQYKEA  334 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A  334 (507)
                          .+..                   .........+..+++.+.+..+....|    +++.+.+.+|..+...|++++|
T Consensus       226 ----~l~~-------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A  282 (409)
T TIGR00540       226 ----DLEQ-------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA  282 (409)
T ss_pred             ----HHHH-------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence                0000                   001111222333334445555544444    4667778889999999999999


Q ss_pred             HHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHH
Q psy12000        335 EEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID  414 (507)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~  414 (507)
                      ++.++++++..|++....                 +.             .+..            ......++.+++++
T Consensus       283 ~~~l~~~l~~~pd~~~~~-----------------~~-------------~l~~------------~~~l~~~~~~~~~~  320 (409)
T TIGR00540       283 QEIIFDGLKKLGDDRAIS-----------------LP-------------LCLP------------IPRLKPEDNEKLEK  320 (409)
T ss_pred             HHHHHHHHhhCCCcccch-----------------hH-------------HHHH------------hhhcCCCChHHHHH
Confidence            999999886554432100                 00             0000            01111245677788


Q ss_pred             HHHHHhhcCCchh--hhHHHHHhhccccccchhHHHHHH--HHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000        415 IYKRILLDHKDLL--ALNVYGAMCYYKLDYYDVSQEQVA--MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS  490 (507)
Q Consensus       415 ~~~~~l~~~p~~~--~~~~~la~~y~~~g~~~~A~~~~~--~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (507)
                      .+++.++..|+++  .+...+|+++++.|++++|.+.|+  .+++.+|++.... .++.++..+++.+.|...+++.+..
T Consensus       321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888899988  778888999999999999999998  6788888888755 7788888888888888877776544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495|consensus

Probab=99.78  E-value=9.7e-15  Score=141.94  Aligned_cols=347  Identities=14%  Similarity=0.027  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.-+....+.+-++-|+.+|..+|+.+|....++...+..--.-|..+.-..+|++++..-|..+.-+.+.+......|
T Consensus       519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag  598 (913)
T KOG0495|consen  519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG  598 (913)
T ss_pred             HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence            56677788888888888888888888888888888877777777888888888888888888888777777777777778


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH--HHHHHHHHHHhhhccCcHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE--YILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~  260 (507)
                      +...|...+..+++     ..|++.+.|+.-..+.....+++.|..+|.+.-...|..  ++-.+.+.-.++.       
T Consensus       599 dv~~ar~il~~af~-----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~-------  666 (913)
T KOG0495|consen  599 DVPAARVILDQAFE-----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN-------  666 (913)
T ss_pred             CcHHHHHHHHHHHH-----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh-------
Confidence            88888877776642     455566777777777778888888888877654433332  2222222223332       


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                      .++|++++.....  ..|+..--++.+|.++..+++.+.|.+.|....+..|+..-.+..|+.+-.+.|+.-+|..++++
T Consensus       667 ~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr  744 (913)
T KOG0495|consen  667 VEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR  744 (913)
T ss_pred             HHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            3334443322111  11222223456788888888888888777777777777765666677777778888888888887


Q ss_pred             hcccCCCchhhhhhhhcccCccchhhhHHH---------------------HHHHHcCCcHHHHHHHHHhhhcHHHHHHH
Q psy12000        341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSF---------------------HLSHKLGDEKSLMEYHQKLEDSLEEQLCL  399 (507)
Q Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  399 (507)
                      +.-.+|.+...|+..+ +.-.+.|..+.|-                     .+.-+-+......+.+++-...+.--+..
T Consensus       745 arlkNPk~~~lwle~I-r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai  823 (913)
T KOG0495|consen  745 ARLKNPKNALLWLESI-RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI  823 (913)
T ss_pred             HHhcCCCcchhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence            7655566665554321 1111222222222                     22111122222233333222222222445


Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhh
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      +...+...++++|.+.|.++++.+|++-+++.++=--+...|.-+.-.+++..+..-.|.+-.-+
T Consensus       824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W  888 (913)
T KOG0495|consen  824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW  888 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence            56667777888888888888888888776554443445567777777778888887777776543

>KOG4340|consensus

Probab=99.77  E-value=3.2e-17  Score=144.96  Aligned_cols=222  Identities=23%  Similarity=0.281  Sum_probs=178.0

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-cccc-hHHHHHHhcCChh
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-AKTR-LSFHLSHKLGDEK   87 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~   87 (507)
                      -.+|+|||...+|..|..+|+++-...|......++.++++++.+.+..|+.+.....+.+ ..++ +.+..+.++ ..+
T Consensus        48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY-se~  126 (459)
T KOG4340|consen   48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKY-SEG  126 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-ccc
Confidence            3479999999999999999999999999988888999999999999999999888776532 2222 344555555 344


Q ss_pred             HHHHHHHHHhhcH----HH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         88 SLMEYHQKLEDSL----EE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        88 ~~~~~~~~l~~~~----~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      ++..+...+...|    .+ ..+.|++.++.|+|+.|++-|+.+++...-++-+-+++|.|+++.|+++.|+++.+.++.
T Consensus       127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4444444444333    12 789999999999999999999999999999999999999999999999999999888863


Q ss_pred             ----cCCCcH-------------------------HHHHHHhhhhhhccChHHHHHhhHHHH-------------H----
Q psy12000        163 ----QKPTSR-------------------------IALNLKACNTYKLFTSRAAENQLKPIL-------------V----  196 (507)
Q Consensus       163 ----~~p~~~-------------------------~a~~~~a~~~~~~~~~~~A~~~l~~~~-------------~----  196 (507)
                          .+|...                         .++++++.|.++.++++.|.+.+.++-             +    
T Consensus       207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~  286 (459)
T KOG4340|consen  207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM  286 (459)
T ss_pred             hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence                455321                         268999999999999999998887651             0    


Q ss_pred             -------------hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        197 -------------SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       197 -------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                                   +.+....|.+++..-|+-.+|++..-|+-|.+.+.+
T Consensus       287 n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  287 NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence                         455566788889999999999999999999887754

>PRK12370 invasion protein regulator; Provisional

Probab=99.77  E-value=5.8e-17  Score=167.50  Aligned_cols=161  Identities=13%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .+|.++...|++++|+..++++...+|+++.+++.+|.++...|++++|+..|++++..+|.+...+             
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~-------------  409 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG-------------  409 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH-------------
Confidence            3455555566666666666666666666666666666666666666666666666654443321100             


Q ss_pred             hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc-CCchhhhHHHHHhhccccccch
Q psy12000        366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYD  444 (507)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~-~p~~~~~~~~la~~y~~~g~~~  444 (507)
                                                     ..++.+++..|++++|+..+++++.. .|+.+..+..+|.+|..+|+++
T Consensus       410 -------------------------------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        410 -------------------------------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             -------------------------------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence                                           00011233345566666666666554 3555555566666666666666


Q ss_pred             hHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000        445 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG  492 (507)
Q Consensus       445 ~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                      +|+..++++....|++..+.+.++..+..  .++.+.+.++++++..-
T Consensus       459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~a~~~l~~ll~~~~  504 (553)
T PRK12370        459 LARKLTKEISTQEITGLIAVNLLYAEYCQ--NSERALPTIREFLESEQ  504 (553)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Confidence            66666666666666666666655555553  33455555555555443

>KOG2003|consensus

Probab=99.76  E-value=7.8e-16  Score=143.41  Aligned_cols=413  Identities=15%  Similarity=0.068  Sum_probs=245.5

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH---
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE-----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH---   78 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~---   78 (507)
                      -+...+|.+++...+|.+|+++|+.+|.+-|+-.     ....++|..+.+.|+|+.|+..|+.+.+..++-..-++   
T Consensus       238 ~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i  317 (840)
T KOG2003|consen  238 ILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII  317 (840)
T ss_pred             eeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh
Confidence            3445678889999999999999999988877632     35677888888899999999888877654443322222   


Q ss_pred             HHHhcCChhHHHHHHHHHhhc---------------HHH-HHHHHH---HHHH-----hhcHHHHHHHHHHHHH--hCCc
Q psy12000         79 LSHKLGDEKSLMEYHQKLEDS---------------LEE-QLCLAS---IHFL-----RCHYQEAIDIYKRILL--DHKD  132 (507)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~---------------~~~-~~~la~---~~~~-----~g~~~~A~~~~~~~l~--~~p~  132 (507)
                      .+...++.+...++..++-+.               |.+ +++-+.   .+..     ..+-++||-.--++|.  +.|+
T Consensus       318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~  397 (840)
T KOG2003|consen  318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD  397 (840)
T ss_pred             hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence            223344555555555444211               111 222111   1111     1112222222222221  1122


Q ss_pred             h--------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-HHHHHhhhhhhcc--ChHHHHH
Q psy12000        133 L--------------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-ALNLKACNTYKLF--TSRAAEN  189 (507)
Q Consensus       133 ~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-a~~~~a~~~~~~~--~~~~A~~  189 (507)
                      .                    .+.-.+.|--+++.|+++.|+++++-+-+.+..... +.+.+..+.+.+|  ++-+|..
T Consensus       398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq  477 (840)
T KOG2003|consen  398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ  477 (840)
T ss_pred             hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence            1                    123356677788888888888888777665554433 2233333333322  3444443


Q ss_pred             hhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000        190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQ  269 (507)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  269 (507)
                      .-...     ...+..++-+..|-|.+-+..|++++|.+.+++....+..    ...+++.+|-..++.+.+++|+..|-
T Consensus       478 yad~a-----ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  478 YADIA-----LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             HHHHH-----hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            32222     2334445566667777777788888888887765433321    12234455555555566677777664


Q ss_pred             HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                      ++...  ..........++.+|..+.+..+||+++-++.+.-|++|.++..||.+|-+.|+-.+|.+++-..-.--|.+ 
T Consensus       549 klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-  625 (840)
T KOG2003|consen  549 KLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-  625 (840)
T ss_pred             HHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-
Confidence            33211  011223345689999999999999999999999999999999999999999999999999875543332332 


Q ss_pred             hhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHH-HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh
Q psy12000        350 YVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ-LCLASIHFLRCHYQEAIDIYKRILLDHKDLLA  428 (507)
Q Consensus       350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~  428 (507)
                      ...+.||+.-|....-+++++.++.+..-          +.-+...| +..+......|+|++|++.|+......|.+.+
T Consensus       626 ie~iewl~ayyidtqf~ekai~y~ekaal----------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld  695 (840)
T KOG2003|consen  626 IETIEWLAAYYIDTQFSEKAINYFEKAAL----------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD  695 (840)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHh----------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence            22345676555555555666655544211          00000111 22333444569999999999999999999988


Q ss_pred             hHHHHHhhccccc
Q psy12000        429 LNVYGAMCYYKLD  441 (507)
Q Consensus       429 ~~~~la~~y~~~g  441 (507)
                      ..-.+..+.--+|
T Consensus       696 clkflvri~~dlg  708 (840)
T KOG2003|consen  696 CLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHhcccc
Confidence            6555555555565

>KOG1173|consensus

Probab=99.75  E-value=3.2e-15  Score=143.44  Aligned_cols=428  Identities=11%  Similarity=0.074  Sum_probs=271.6

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      -+..+.+|..|+-+-+++..+. .+|.-.+.+|++++..|+++.|...+..-.-.......                   
T Consensus        25 ~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~c-------------------   84 (611)
T KOG1173|consen   25 DALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIAC-------------------   84 (611)
T ss_pred             HHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHH-------------------
Confidence            5677889999999999998776 66666789999999999999998876543110000000                   


Q ss_pred             HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHH------HHhCCch-------------------hHHHHHHHHHHHhcCC
Q psy12000         95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI------LLDHKDL-------------------LALNVYGAMCYYKLDY  149 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------l~~~p~~-------------------~~~~~~la~~~~~~g~  149 (507)
                              .+..+.+++...++++|..+....      +..+|.+                   ..+.+..|.+|..+.+
T Consensus        85 --------ryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n  156 (611)
T KOG1173|consen   85 --------RYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDN  156 (611)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhcc
Confidence                    223344445555555555444411      1111111                   1233445666666667


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc---------c-----ChHHHHHhhHHHHH----h-----hCCCC----
Q psy12000        150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKL---------F-----TSRAAENQLKPILV----S-----ILPPL----  202 (507)
Q Consensus       150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~---------~-----~~~~A~~~l~~~~~----~-----~~~~~----  202 (507)
                      +++|...|++++..++..-.++..+-.-++..         +     ...+-.+.++...+    +     .....    
T Consensus       157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s  236 (611)
T KOG1173|consen  157 REEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES  236 (611)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence            77777777777766666655433221111100         0     00000011111100    0     00000    


Q ss_pred             ---CCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc
Q psy12000        203 ---IDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS  276 (507)
Q Consensus       203 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~  276 (507)
                         ....++.....+..+...++|.+...+...+   +|-++.-+.+.-..+..+|+.   ..-|.-+-++.+..+    
T Consensus       237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~---n~Lf~lsh~LV~~yP----  309 (611)
T KOG1173|consen  237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS---NKLFLLSHKLVDLYP----  309 (611)
T ss_pred             hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc---chHHHHHHHHHHhCC----
Confidence               0112334445566788899999999888765   455554444433345555543   233444444433322    


Q ss_pred             cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc--CCCchhhhhh
Q psy12000        277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE--GLKNDYVYIS  354 (507)
Q Consensus       277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~  354 (507)
                        .....|+.+|..|...|++++|..+|.++...+|.-..++...|..+...|..|+|+..|..+-..  +.--...|++
T Consensus       310 --~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  310 --SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             --CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence              223346778999999999999999999999999887667788999999999999999999887433  2223345544


Q ss_pred             hhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH---HHHHHHHhHhhHHHHHHHHHHHhh----cC---C
Q psy12000        355 HLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL---CLASIHFLRCHYQEAIDIYKRILL----DH---K  424 (507)
Q Consensus       355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~l~~~~~~~~~~~~Ai~~~~~~l~----~~---p  424 (507)
                      +   -|-..++...|-..+...            ++-.|.+++   .+|.+.|..+.|.+|+.+|++++.    ..   |
T Consensus       388 m---ey~~t~n~kLAe~Ff~~A------------~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~  452 (611)
T KOG1173|consen  388 M---EYMRTNNLKLAEKFFKQA------------LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI  452 (611)
T ss_pred             H---HHHHhccHHHHHHHHHHH------------HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence            3   223334444443333221            111122222   356788888999999999999883    22   2


Q ss_pred             chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        425 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       425 ~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .......++|.+|.|++++++|+..++++|.+.|.++.++--.|.++..+++.+.|+.-|.+-+-..|-+
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            2334678999999999999999999999999999999999999999999999999999899998888877

>KOG1840|consensus

Probab=99.74  E-value=1.3e-15  Score=150.55  Aligned_cols=315  Identities=19%  Similarity=0.135  Sum_probs=195.3

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH-------Hh-hcHH---HHHHHHHHHH
Q psy12000         43 EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK-------LE-DSLE---EQLCLASIHF  111 (507)
Q Consensus        43 ~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~-~~~~---~~~~la~~~~  111 (507)
                      .......+...+.+++|....+.....+....+................+...       +. ..|.   ....+|.+|.
T Consensus       131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~  210 (508)
T KOG1840|consen  131 LHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYA  210 (508)
T ss_pred             HHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence            44566667777888888877766543322111111111111111111111111       11 1222   2456999999


Q ss_pred             HhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        112 LRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      .+|+|++|+..+++++.+        .|.-......+|.+|..++++++|+.+|++++.+.-                  
T Consensus       211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e------------------  272 (508)
T KOG1840|consen  211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE------------------  272 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH------------------
Confidence            999999999999999998        566666666799999999999999999998874321                  


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000        184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA  263 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  263 (507)
                                   .+.....|....++.+|+.+|.++|++++|..++++.                              
T Consensus       273 -------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A------------------------------  309 (508)
T KOG1840|consen  273 -------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA------------------------------  309 (508)
T ss_pred             -------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH------------------------------
Confidence                         1222333444567889999999999999998888643                              


Q ss_pred             HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc-----CCC---chHHHHHHHHHHhhCCHHHHH
Q psy12000        264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY-----TSD---DSFNFNFAQAKCALGQYKEAE  335 (507)
Q Consensus       264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~-----~~~---~~~~~~lg~~~~~~g~~~~A~  335 (507)
                       .++++++.. ...++.......++.++..++++++|+.+++++.++.     +++   .....++|.+|..+|++++|.
T Consensus       310 -l~I~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  310 -LEIYEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             -HHHHHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence             111111000 0011111112347888999999999999988765432     223   356678999999999999999


Q ss_pred             HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh-------
Q psy12000        336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH-------  408 (507)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~-------  408 (507)
                      ++|++++......       .+.-                   ....-..+..          ++..++..++       
T Consensus       388 ~~~k~ai~~~~~~-------~~~~-------------------~~~~~~~l~~----------la~~~~~~k~~~~a~~l  431 (508)
T KOG1840|consen  388 ELYKKAIQILREL-------LGKK-------------------DYGVGKPLNQ----------LAEAYEELKKYEEAEQL  431 (508)
T ss_pred             HHHHHHHHHHHhc-------ccCc-------------------ChhhhHHHHH----------HHHHHHHhcccchHHHH
Confidence            9999987432100       0000                   0000000000          1112222222       


Q ss_pred             HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        409 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       409 ~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      |.+|+.+.+.+-...|+....+.+||-+|.++|++++|++..+.++..
T Consensus       432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            566666664444577888888999999999999999999999998853

>KOG4162|consensus

Probab=99.74  E-value=1e-14  Score=144.71  Aligned_cols=186  Identities=14%  Similarity=0.059  Sum_probs=138.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc--cccc-hHHHHH-HhcCC-
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR--AKTR-LSFHLS-HKLGD-   85 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~--~~~~-~~~~~~-~~~~~-   85 (507)
                      -+..+...-|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...++.....  +... .++..+ ....+ 
T Consensus       328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l  407 (799)
T KOG4162|consen  328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL  407 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence            356667778999999999999987766677899999999999999999999998765422  3222 222222 22222 


Q ss_pred             --hhHHHHHHHH-Hhhc--------HHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q psy12000         86 --EKSLMEYHQK-LEDS--------LEEQLCLASIHFLR-----------CHYQEAIDIYKRILLDHKDLLALNVYGAMC  143 (507)
Q Consensus        86 --~~~~~~~~~~-l~~~--------~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  143 (507)
                        .+....|..+ +...        +..+..+|..|-.+           -...++++.++++++++|.++.+.++++.-
T Consensus       408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq  487 (799)
T KOG4162|consen  408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ  487 (799)
T ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence              2333333333 2211        12255666655433           335689999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000        144 YYKLDYYDVSQEQVAMYLAQKP-TSRIALNLKACNTYKLFTSRAAENQLKPILV  196 (507)
Q Consensus       144 ~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~  196 (507)
                      |...++.+.|....+++++.+| +++.++.++|.+.-..+++.+|+...+..+.
T Consensus       488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999954 5567899999998889999999988887653

>KOG0624|consensus

Probab=99.74  E-value=3.5e-15  Score=134.61  Aligned_cols=312  Identities=14%  Similarity=0.038  Sum_probs=211.7

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc---ch-HHHHHHh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT---RL-SFHLSHK   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~---~~-~~~~~~~   82 (507)
                      .-.+.+|..++..|++..|+..|..+++.+|++-.+.+..|.+|..+|+-.-|+..+.++.+..+.-   ++ ...+..+
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            3456788999999999999999999999999888888888889999999888888888876533321   11 1112223


Q ss_pred             cCChhHHH-HHHHHHhhcH----------------HH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q psy12000         83 LGDEKSLM-EYHQKLEDSL----------------EE--QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC  143 (507)
Q Consensus        83 ~~~~~~~~-~~~~~l~~~~----------------~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  143 (507)
                      .|..+.+. .+...|...|                +-  +......++..|++..||.....+|++.|.+...+-..|.|
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC  198 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            33322222 2222232111                11  23344566778999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000        144 YYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH  223 (507)
Q Consensus       144 ~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  223 (507)
                      |...|+..+|+.-++.+-++..++..+++-.+.++|..|+.+.+...+...+     .++|.+...+-    .|-+.++.
T Consensus       199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-----KldpdHK~Cf~----~YKklkKv  269 (504)
T KOG0624|consen  199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-----KLDPDHKLCFP----FYKKLKKV  269 (504)
T ss_pred             HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-----ccCcchhhHHH----HHHHHHHH
Confidence            9999999999999999999999999988888888888888887776665543     23333221110    11111111


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccccc--chhhhhHHHHHHHhhcCHHHHH
Q psy12000        224 QEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECD--TVPGRQCMASSFFLLRSFKDVI  301 (507)
Q Consensus       224 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~Ai  301 (507)
                      .+.++..++.                      .....+.+.++-.+++....+...  .......+..|+..-+++.+||
T Consensus       270 ~K~les~e~~----------------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi  327 (504)
T KOG0624|consen  270 VKSLESAEQA----------------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI  327 (504)
T ss_pred             HHHHHHHHHH----------------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence            1111111110                      001122222322222222211111  1112224678999999999999


Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                      .....++..+|++..++-.++.+|....+|+.|+..|+++++-++.+.
T Consensus       328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            999999999999988888999999999999999999999987665443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.74  E-value=1.5e-15  Score=150.57  Aligned_cols=297  Identities=11%  Similarity=0.022  Sum_probs=200.8

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFN-IASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      +.-|...+..|||++|.+...+.-+..+. +..++. .+.+...+|+++.|..++.++.+..+.+...            
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~------------  154 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP------------  154 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH------------
Confidence            45677888889999999888776554333 444444 4666699999999999998876544432100            


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                   ..+..+.++...|++++|+..++++.+.+|+++.++..++.+|...|+|++|++++.++.+..+.++
T Consensus       155 -------------~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~  221 (398)
T PRK10747        155 -------------VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE  221 (398)
T ss_pred             -------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence                         0223478999999999999999999999999999999999999999999999999999998776654


Q ss_pred             HHHH-HHhhhh---hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHH
Q psy12000        169 IALN-LKACNT---YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILK  244 (507)
Q Consensus       169 ~a~~-~~a~~~---~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~  244 (507)
                      .... +....+   ............+.+.. +.++...+..+.+...++..+...|+.++|...+.+..+..++.....
T Consensus       222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w-~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~  300 (398)
T PRK10747        222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWW-KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVL  300 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence            4221 110110   01000011112222221 112233355678899999999999999999999987654443332211


Q ss_pred             HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000        245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA  324 (507)
Q Consensus       245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~  324 (507)
                        ++..+.. ......++.+....++.+      +....+..+|.++...+++++|.++|+++.+..|++.. +..++.+
T Consensus       301 --l~~~l~~-~~~~~al~~~e~~lk~~P------~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~  370 (398)
T PRK10747        301 --LIPRLKT-NNPEQLEKVLRQQIKQHG------DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADA  370 (398)
T ss_pred             --HHhhccC-CChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence              1221111 122233444444433322      23333556899999999999999999999988888764 3569999


Q ss_pred             HHhhCCHHHHHHHHHhhcc
Q psy12000        325 KCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       325 ~~~~g~~~~A~~~~~~~~~  343 (507)
                      +.++|+.++|..+|++.+.
T Consensus       371 ~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        371 LDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHh
Confidence            9999999999999998753

>KOG0548|consensus

Probab=99.73  E-value=1.5e-14  Score=138.28  Aligned_cols=348  Identities=16%  Similarity=0.063  Sum_probs=216.5

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch-HHHHHHhc-------
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL-SFHLSHKL-------   83 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~-------   83 (507)
                      ..-+|..+|+|++|.+--.+..+++|+=+..|..+|..+.-+|+|++|+..|.+..+.++.+.. .-.++...       
T Consensus        42 rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~  121 (539)
T KOG0548|consen   42 RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAAD  121 (539)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhh
Confidence            3556777788888888888888888887778888888888888888888877766543333321 11111000       


Q ss_pred             --------------------------------------------CChhHHHHHHHHHhh---------------------
Q psy12000         84 --------------------------------------------GDEKSLMEYHQKLED---------------------   98 (507)
Q Consensus        84 --------------------------------------------~~~~~~~~~~~~l~~---------------------   98 (507)
                                                                  .....+..+...+..                     
T Consensus       122 ~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~  201 (539)
T KOG0548|consen  122 QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC  201 (539)
T ss_pred             hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc
Confidence                                                        000111111111100                     


Q ss_pred             ------------cHH---------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         99 ------------SLE---------EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        99 ------------~~~---------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                                  .++         ..-.+|...++..+++.|++.|..++..+ .....+.+.|-+|+.+|.+.+++...
T Consensus       202 ~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c  280 (539)
T KOG0548|consen  202 KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELC  280 (539)
T ss_pred             cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcch
Confidence                        000         03356677777777777777777777777 66666666777777777777776666


Q ss_pred             HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--
Q psy12000        158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP--  235 (507)
Q Consensus       158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~--  235 (507)
                      ...++..-....-+++++                                .+...+|..|.+.++++.|+..+.+...  
T Consensus       281 ~~a~E~gre~rad~klIa--------------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~  328 (539)
T KOG0548|consen  281 EKAVEVGRELRADYKLIA--------------------------------KALARLGNAYTKREDYEGAIKYYQKALTEH  328 (539)
T ss_pred             HHHHHHhHHHHHHHHHHH--------------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence            654433222221111111                                2233377788889999999999987532  


Q ss_pred             CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000        236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD  315 (507)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~  315 (507)
                      ..|+..       ..       ....+++........-...+. ....+ .-|..+++.|+|..|+..|.++...+|++.
T Consensus       329 Rt~~~l-------s~-------lk~~Ek~~k~~e~~a~~~pe~-A~e~r-~kGne~Fk~gdy~~Av~~YteAIkr~P~Da  392 (539)
T KOG0548|consen  329 RTPDLL-------SK-------LKEAEKALKEAERKAYINPEK-AEEER-EKGNEAFKKGDYPEAVKHYTEAIKRDPEDA  392 (539)
T ss_pred             cCHHHH-------HH-------HHHHHHHHHHHHHHHhhChhH-HHHHH-HHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence            222211       11       111222222111110000000 01112 348999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHH
Q psy12000        316 SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEE  395 (507)
Q Consensus       316 ~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  395 (507)
                      ..+-|+|.||.++|.+..|+...+++++.+|.....|                                           
T Consensus       393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy-------------------------------------------  429 (539)
T KOG0548|consen  393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY-------------------------------------------  429 (539)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH-------------------------------------------
Confidence            9999999999999999999999999987765322111                                           


Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000        396 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  452 (507)
Q Consensus       396 ~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  452 (507)
                       +..|.+++...+|++|++.|.++++.+|++..+...+..|...+.......+..+.
T Consensus       430 -~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  430 -LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence             12234666678999999999999999999999888888888765444555555555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.72  E-value=7.3e-16  Score=141.59  Aligned_cols=197  Identities=13%  Similarity=0.030  Sum_probs=166.4

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ...++.+|.+++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++....+..            
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------   98 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------   98 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence            34567789999999999999999999999999999999999999999999999999998875432221            


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                                    +..+..+|.++...|++++|+..|++++...  |.....+..+|.++...|++++|...+++++..
T Consensus        99 --------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        99 --------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             --------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                          1225678899999999999999999999754  456678889999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      +|+++.++..++.+++..|++++|...++++.+     ..+..+..+..++.++...|+.++|....+.+
T Consensus       165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQ-----TYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999988888889999999999999988887653     13445666777888888889999988776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=8.1e-16  Score=146.13  Aligned_cols=124  Identities=11%  Similarity=0.124  Sum_probs=85.3

Q ss_pred             hcCHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         19 LGQYKQALGIYETLRHLPN----PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      .+..+.++..+.+++...|    ..+..|+.+|.++...|++++|+..|+++....+..                     
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------------   97 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------------   97 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------
Confidence            3455667777777775433    224567777777777777777777776664433221                     


Q ss_pred             HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                           +..+..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|++.|+++++.+|+++
T Consensus        98 -----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         98 -----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                 223566777777777777777777777777777777777777777777777777777777777777765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=4.3e-14  Score=140.23  Aligned_cols=298  Identities=10%  Similarity=0.027  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH-HHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG-AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN-LKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~-~~a~~~~~  180 (507)
                      .+..|.+....|++++|.+...+.-.. ++++.+++.+ +.+....|+++.|..++.++.+.+|++..+.. +.+.++..
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            466788888899999999777664433 3345666665 55559999999999999999999999876543 34788888


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHH-HHHHHHHHhhhccC
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYI-LKAVVQVTIGQDTG  256 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~-~~~~~~~~~g~~~~  256 (507)
                      .|+++.|...++.+.     ...|.++.+...++.+|.+.|++++|++.+.++.   ..++.... +...++..      
T Consensus       166 ~g~~~~Al~~l~~~~-----~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~------  234 (398)
T PRK10747        166 RNENHAARHGVDKLL-----EVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG------  234 (398)
T ss_pred             CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH------
Confidence            999999999888764     4567788899999999999999999998776653   22222111 11111100      


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                                                    +........+-+...++.+..-...|+++.+...+|..+...|+.++|..
T Consensus       235 ------------------------------l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        235 ------------------------------LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             ------------------------------HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence                                          00001111222333344455444456677777778888888888888888


Q ss_pred             HHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHH
Q psy12000        337 MFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY  416 (507)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~  416 (507)
                      .+++.++..+.+. ...                  +                            ......++.+++++..
T Consensus       285 ~L~~~l~~~~~~~-l~~------------------l----------------------------~~~l~~~~~~~al~~~  317 (398)
T PRK10747        285 IILDGLKRQYDER-LVL------------------L----------------------------IPRLKTNNPEQLEKVL  317 (398)
T ss_pred             HHHHHHhcCCCHH-HHH------------------H----------------------------HhhccCCChHHHHHHH
Confidence            8888775332211 000                  0                            0111225667777777


Q ss_pred             HHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000        417 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS  490 (507)
Q Consensus       417 ~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (507)
                      ++.++.+|+++.+...+|.++.+.|++++|.+.|+.+++..|+++... .++.++-.+++.+.|..-+++.+..
T Consensus       318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            777777777777777777777777777777777777777777766633 4666666666677776666666554

>KOG0550|consensus

Probab=99.70  E-value=1.1e-15  Score=141.31  Aligned_cols=296  Identities=12%  Similarity=0.004  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ....|..++++.+|.+|+..|..+|+.+|++...|.+.+.+++..|+|+.|.-..++.+..+|....+....+.++    
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~----  127 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH----  127 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh----
Confidence            5678899999999999999999999999999999999999999999999999999999998888775433222222    


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                                                         ...++.-+|...++..   .|.                    ...
T Consensus       128 -----------------------------------~a~~~~i~A~~~~~~~---~~~--------------------~~a  149 (486)
T KOG0550|consen  128 -----------------------------------LALSDLIEAEEKLKSK---QAY--------------------KAA  149 (486)
T ss_pred             -----------------------------------hhhHHHHHHHHHhhhh---hhh--------------------HHh
Confidence                                               2223333333333210   000                    000


Q ss_pred             HHHHHHHHhCCCcc-cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        263 AAQALFQLVGSSQS-ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       263 ~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                      .|...+..+..+.. .|.-..+...-+.|+.-.|++++|...--.+++.++.+..+++..|.+++-.++.+.|+.+|++.
T Consensus       150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa  229 (486)
T KOG0550|consen  150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA  229 (486)
T ss_pred             hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence            01111111111111 11112223345789999999999999888888899888888888999999999999999999999


Q ss_pred             cccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh
Q psy12000        342 QNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL  421 (507)
Q Consensus       342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~  421 (507)
                      +..+|.....-.               ++...                 +.++.+..-|.-.+..|+|.+|..+|+.++.
T Consensus       230 l~ldpdh~~sk~---------------~~~~~-----------------k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  230 LRLDPDHQKSKS---------------ASMMP-----------------KKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hccChhhhhHHh---------------HhhhH-----------------HHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            987764321110               00000                 0011112224566788999999999999999


Q ss_pred             cCCchhh----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000        422 DHKDLLA----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAG  492 (507)
Q Consensus       422 ~~p~~~~----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                      .+|++.+    ++.+.|.+..++|+..+|+.....+++++|....++..++..+..+.....|.++|++..+..-
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999854    5678899999999999999999999999999999999999999999999999999999887653

>KOG2376|consensus

Probab=99.69  E-value=1.7e-13  Score=132.33  Aligned_cols=218  Identities=17%  Similarity=0.055  Sum_probs=140.0

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      -=+.+...|+|++|.+...+++...|++.++....-.+++++++|++|+...++-......+...|+-+.+....+...+
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence            34566778999999999999999999999999999999999999999998777654322222222444433223333333


Q ss_pred             HHHHHh---hcHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         92 YHQKLE---DSLE-EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        92 ~~~~l~---~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      +...+.   +.+. .....|.+.|..|+|++|.++|+.+++.+.+..+........-....  -.+.  ..+.+...|.+
T Consensus        98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~--~~q~v~~v~e~  173 (652)
T KOG2376|consen   98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ--LLQSVPEVPED  173 (652)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH--HHHhccCCCcc
Confidence            333332   2222 35667899999999999999999998877655443332221111100  0010  22223344442


Q ss_pred             -HHHHHHHhhhhhhccChHHHHHhhHHHHH---hhCCCCCCC--h-----hHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        168 -RIALNLKACNTYKLFTSRAAENQLKPILV---SILPPLIDV--I-----PESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       168 -~~a~~~~a~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                       -.-++..||++...|++.+|++.+++..+   +.+..-+..  .     .-.+..|+.++..+|+..+|...+..+
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~  250 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI  250 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence             23455578888889999999988888743   111111111  1     125778888999999999999877654

>KOG4162|consensus

Probab=99.69  E-value=1.7e-12  Score=129.14  Aligned_cols=388  Identities=12%  Similarity=0.021  Sum_probs=263.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhhhh-
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIALNLKACNTY-  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~~a~~~~-  179 (507)
                      +-.+.......|+|+.+.+.|++++...=...+.|+.++.++...|.-..|+.+++..+...  |+++..+.+.+.+.. 
T Consensus       326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e  405 (799)
T KOG4162|consen  326 FDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE  405 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh
Confidence            44566667788999999999999998888888999999999999999999999999999888  888877666544433 


Q ss_pred             hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-----------ccHHHHHHHHH---hcCCCChHHHHHHH
Q psy12000        180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-----------EEHQEAFDLIK---NLEPSVPQEYILKA  245 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~l~---~~~~~~~~~~~~~~  245 (507)
                      +.+..++++..-.++++..........+.+++.+|..|-.+           ....+++..++   +++|.+|......+
T Consensus       406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la  485 (799)
T KOG4162|consen  406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA  485 (799)
T ss_pred             chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            56677777776666654222233344567888888877542           11334555554   45889997766666


Q ss_pred             HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000        246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK  325 (507)
Q Consensus       246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~  325 (507)
                      ..+....+...+.+...++..+   .     ..+...+|+.||.++...+++.+|+.+.+.+....|++-........+-
T Consensus       486 lq~A~~R~l~sAl~~~~eaL~l---~-----~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  486 LQYAEQRQLTSALDYAREALAL---N-----RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHh---c-----CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence            6666555554444444443331   1     1234677888999999999999999999998887776543333344444


Q ss_pred             HhhCCHHHHHHHHHhhccc---CCC----------------------------chhhhhhhhccc--------------C
Q psy12000        326 CALGQYKEAEEMFLLVQNE---GLK----------------------------NDYVYISHLTKC--------------S  360 (507)
Q Consensus       326 ~~~g~~~~A~~~~~~~~~~---~~~----------------------------~~~~~~~~l~~~--------------~  360 (507)
                      ...|+.++|+......+..   .++                            ....++..+...              .
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence            5567888887766543311   000                            001111100000              0


Q ss_pred             ccch----------hhhHHHHHHHHcCCcHHHHHHHHHhhhc-HHH---HHHHHHHHHhHhhHHHHHHHHHHHhhcCCch
Q psy12000        361 PSRA----------KTRLSFHLSHKLGDEKSLMEYHQKLEDS-LEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDL  426 (507)
Q Consensus       361 ~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~  426 (507)
                      ...+          -|-.+-..+.+.+..+++...+.+.... +..   ....|..+..+|+.++|...|..++..+|+.
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence            0000          0001222333333333333222222111 100   1112445556689999999999999999999


Q ss_pred             hhhHHHHHhhccccccchhHHH--HHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCC
Q psy12000        427 LALNVYGAMCYYKLDYYDVSQE--QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFP  498 (507)
Q Consensus       427 ~~~~~~la~~y~~~g~~~~A~~--~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (507)
                      +.....+|.++.+.|+..-|..  +++.+++.+|.++.+|..+|.++..+++.++|-.=|+.-++.++-+.++|
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~p  791 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLP  791 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccc
Confidence            9999999999999999999988  99999999999999999999999999998888888999999999886655

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=4.8e-15  Score=136.10  Aligned_cols=198  Identities=18%  Similarity=0.113  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+..+|.++...|++++|+..+++++..+|++..++..+|.++..+|++++|++.+++++..+|.+..++..++.+++..
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  112 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ  112 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            37789999999999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV  261 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  261 (507)
                      |++++|...+..+..   ....+..+..+.++|.++...|++++|...+.+....+|.                      
T Consensus       113 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------------  167 (234)
T TIGR02521       113 GKYEQAMQQFEQAIE---DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ----------------------  167 (234)
T ss_pred             ccHHHHHHHHHHHHh---ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------------------
Confidence            888888888887642   1112334456777888888888888888777653221111                      


Q ss_pred             HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                                        ....+..+|.++...|++++|+.+++++....|.++..+..++.++...|+.++|..+.+.+
T Consensus       168 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       168 ------------------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             ------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                              11123357888888999999999888887777766666667888888899999998887765


Q ss_pred             c
Q psy12000        342 Q  342 (507)
Q Consensus       342 ~  342 (507)
                      .
T Consensus       230 ~  230 (234)
T TIGR02521       230 Q  230 (234)
T ss_pred             H
Confidence            4

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=3.6e-15  Score=141.69  Aligned_cols=202  Identities=12%  Similarity=-0.023  Sum_probs=152.1

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..++++....+..             
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-------------  131 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------------  131 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------
Confidence            3467789999999999999999999999999999999999999999999999999999886543332             


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                   ...+..+|.+++..|++++|++.|++++..+|+++..... ..+....+++++|+..+++.....+.
T Consensus       132 -------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        132 -------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence                         1226789999999999999999999999999998742221 23445678999999999877654332


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCC---CCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILP---PLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~  240 (507)
                      ....+   +...+..|+...+ ..++.+.+ .+.   ...+..+++++++|.++..+|++++|+..+++....+|.+
T Consensus       198 ~~~~~---~~~~~~lg~~~~~-~~~~~~~~-~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~  269 (296)
T PRK11189        198 EQWGW---NIVEFYLGKISEE-TLMERLKA-GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN  269 (296)
T ss_pred             cccHH---HHHHHHccCCCHH-HHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence            22221   3344456666444 24443321 111   1233456899999999999999999999998875555433

>KOG1174|consensus

Probab=99.68  E-value=4.8e-14  Score=130.33  Aligned_cols=306  Identities=14%  Similarity=0.068  Sum_probs=218.2

Q ss_pred             cchhhHH---HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          6 SLTDAWL---GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         6 ~~~~~~l---g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      ++...|+   |.++-...-+.-+..++-+.....|++......+|.|++..|++.+|+..|+++...++.+.        
T Consensus       195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------  266 (564)
T KOG1174|consen  195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------  266 (564)
T ss_pred             cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------
Confidence            4445553   44444444555556666677778899999999999999999999999999998754333321        


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                                        +..-..|.++...|+++.-..+-..++........-|+--+...+..+++..|+.+-+++++
T Consensus       267 ------------------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~  328 (564)
T KOG1174|consen  267 ------------------EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID  328 (564)
T ss_pred             ------------------hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence                              00112345556667777766666666666655555556666667777777778777777777


Q ss_pred             cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000        163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ  239 (507)
Q Consensus       163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~  239 (507)
                      .+|.+..++.++|..+...++.++|.-.|..++     .+.|...+.+..|..+|+..|++.||.-.....   .+.+..
T Consensus       329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-----~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-----MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             cCcccchHHHhccHHHHhccchHHHHHHHHHHH-----hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            777777777777777777777777777777654     244555677888888999999999997665432   344444


Q ss_pred             HHHHHH-HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000        240 EYILKA-VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN  318 (507)
Q Consensus       240 ~~~~~~-~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~  318 (507)
                      ...+.| .+++      .....-++|.+++.+...  ..|+.+++...+|..+...|+++++|.++++.+...|+.. .+
T Consensus       404 ~LtL~g~~V~~------~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH  474 (564)
T KOG1174|consen  404 SLTLFGTLVLF------PDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LH  474 (564)
T ss_pred             hhhhhcceeec------cCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HH
Confidence            433332 2211      112233677777765432  3567778877899999999999999999999998888764 77


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000        319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYV  351 (507)
Q Consensus       319 ~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  351 (507)
                      ..||.++...+.+.+|+++|..++..+|.+...
T Consensus       475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            889999999999999999999999888765433

>KOG1125|consensus

Probab=99.68  E-value=1.7e-15  Score=145.92  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      -+..|+.+.+.|+..+|+-.|+.+++.+|++.++|..||.++...++-..|+..++++++++|++..++..+|..     
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS-----  362 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS-----  362 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH-----
Confidence            467899999999999999999999999999999999999999999999999999999999999988766554444     


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                                                        |..+|.-.+|+..|.+-...+|..      .+........   .+ 
T Consensus       363 ----------------------------------ytNeg~q~~Al~~L~~Wi~~~p~y------~~l~~a~~~~---~~-  398 (579)
T KOG1125|consen  363 ----------------------------------YTNEGLQNQALKMLDKWIRNKPKY------VHLVSAGENE---DF-  398 (579)
T ss_pred             ----------------------------------HhhhhhHHHHHHHHHHHHHhCccc------hhccccCccc---cc-
Confidence                                              444454455555544311111110      0000000000   00 


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC--CCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT--SDDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                               ......++              ...+.+-.++|-.+....|  .++.+...||.+|.-.|+|++|+.+|+.
T Consensus       399 ---------~~~~s~~~--------------~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~  455 (579)
T KOG1125|consen  399 ---------ENTKSFLD--------------SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA  455 (579)
T ss_pred             ---------cCCcCCCC--------------HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence                     00000000              0011112233333333334  5667888899999999999999999999


Q ss_pred             hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000        341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL  420 (507)
Q Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l  420 (507)
                      ++...|.+...|..                                            ||.+.-...+.++||..|.+++
T Consensus       456 AL~v~Pnd~~lWNR--------------------------------------------LGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  456 ALQVKPNDYLLWNR--------------------------------------------LGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             HHhcCCchHHHHHH--------------------------------------------hhHHhcCCcccHHHHHHHHHHH
Confidence            98776654433311                                            2223333357899999999999


Q ss_pred             hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                      +..|.++.+.++||.+|..+|.|++|++.|=.+|.+.+.
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999988776

>KOG1129|consensus

Probab=99.68  E-value=9.8e-16  Score=137.30  Aligned_cols=154  Identities=15%  Similarity=0.036  Sum_probs=87.2

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      +|.||+.+|.+.+|.+.++..|+..|- ++.+..++.+|.+..+...|+..+....+..+-+-                 
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V-----------------  290 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV-----------------  290 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh-----------------
Confidence            566666666666666666666666553 35566666666666666666666555443322210                 


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                               .-+...|.++..++++++|.++|+.+++.+|.+.++.--+|.-|+--|+.+-|+.+|++++++--.++.-+
T Consensus       291 ---------T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf  361 (478)
T KOG1129|consen  291 ---------TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF  361 (478)
T ss_pred             ---------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence                     00234555666666666666666666666666666665666666666666666666666666555555444


Q ss_pred             HHHhhhhhhccChHHHHHhhH
Q psy12000        172 NLKACNTYKLFTSRAAENQLK  192 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~  192 (507)
                      ..++.+-+.-++++-+...|+
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHH
Confidence            434333333334444443333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.68  E-value=4.2e-15  Score=127.58  Aligned_cols=163  Identities=18%  Similarity=0.071  Sum_probs=144.2

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .+++.+|..|+..||+..|...++++|+.+|++..+|.-+|.+|...|+.+.|.+.|+++.+..+.+-            
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------------  103 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG------------  103 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------------
Confidence            45777999999999999999999999999999999999999999999999999999999977555431            


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                                    ..+.+.|..++.+|+|++|...|++++...  |...+.+-|+|.|.+++|+++.|.++|++.+..+
T Consensus       104 --------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         104 --------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             --------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence                          115678999999999999999999998653  5677889999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPIL  195 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~  195 (507)
                      |+.+.+..-++..++..|++-+|...++...
T Consensus       170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~  200 (250)
T COG3063         170 PQFPPALLELARLHYKAGDYAPARLYLERYQ  200 (250)
T ss_pred             cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            9999888888888888888888877776653

>KOG0495|consensus

Probab=99.68  E-value=1.6e-12  Score=126.76  Aligned_cols=462  Identities=11%  Similarity=-0.017  Sum_probs=232.5

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChhHHH------
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEKSLM------   90 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------   90 (507)
                      ..+|..+|..+++.+.+.+|.+|..|..-|++--..|++.-|...+.+--+..+.+ .++++..... ..+...      
T Consensus       263 dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh-p~d~aK~vvA~A  341 (913)
T KOG0495|consen  263 DLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH-PPDVAKTVVANA  341 (913)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC-ChHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999998865532221211 1333222111 111100      


Q ss_pred             --------------------------HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q psy12000         91 --------------------------EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCY  144 (507)
Q Consensus        91 --------------------------~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  144 (507)
                                                ...+.|+..|.. ..|=..-....+.+.|+-++.++.+..|.+.+.+..++   
T Consensus       342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~s-v~LWKaAVelE~~~darilL~rAveccp~s~dLwlAla---  417 (913)
T KOG0495|consen  342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRS-VRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALA---  417 (913)
T ss_pred             HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCch-HHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHH---
Confidence                                      011112222211 11222334456667799999999999999988886555   


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH
Q psy12000        145 YKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ  224 (507)
Q Consensus       145 ~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  224 (507)
                       ++.-|+.|..+++++-+.-|.++.-+..-+.+.-..|+.+.....+...+...-..-....-+.|+.-+...-..|..-
T Consensus       418 -rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~  496 (913)
T KOG0495|consen  418 -RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI  496 (913)
T ss_pred             -HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence             5677899999999999999999887777777777777776666555543210000000111122222222111111111


Q ss_pred             HHHHHHHhc-----CCC-ChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000        225 EAFDLIKNL-----EPS-VPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK  298 (507)
Q Consensus       225 ~A~~~l~~~-----~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  298 (507)
                      -+-.++..+     +.. ....+..-+.....       ..+++.|..+|.....-  .|-....|...+..--.-|..+
T Consensus       497 TcQAIi~avigigvEeed~~~tw~~da~~~~k-------~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK-------RPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             hHHHHHHHHHhhccccchhHhHHhhhHHHHHh-------cchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence            111111100     000 00011111111111       11222222222111000  0000000111111111122333


Q ss_pred             HHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHH---
Q psy12000        299 DVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHK---  375 (507)
Q Consensus       299 ~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---  375 (507)
                      .-..+++++....|..+..++..+..+...|+...|..++..+....|.+..++++. .+....+.+++.|..++.+   
T Consensus       568 sl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa-vKle~en~e~eraR~llakar~  646 (913)
T KOG0495|consen  568 SLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA-VKLEFENDELERARDLLAKARS  646 (913)
T ss_pred             HHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHhhccccHHHHHHHHHHHhc
Confidence            333344444444444444444444444445555555555555443333333333221 1111222223333222211   


Q ss_pred             -----------------cCCcHHHHHHHHHhh----hcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH
Q psy12000        376 -----------------LGDEKSLMEYHQKLE----DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA  434 (507)
Q Consensus       376 -----------------~~~~~~~~~~~~~l~----~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la  434 (507)
                                       ++..++++.++.+--    ....-.+.+|.++-..++.+.|.+.|...++..|+.+.++..++
T Consensus       647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence                             111222333322211    11222355667777777777777777777777777777777777


Q ss_pred             hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        435 MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       435 ~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      .+-.+.|..-.|...++.+.-++|+++..+--.-..-++.++.+.|+....+.+|.-|.+-
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence            7777777777777777777777777777654444444444556666667777777766653

>KOG1127|consensus

Probab=99.66  E-value=4.2e-14  Score=143.45  Aligned_cols=160  Identities=13%  Similarity=0.060  Sum_probs=104.3

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-c--hHHHHHHh----
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-R--LSFHLSHK----   82 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~--~~~~~~~~----   82 (507)
                      -.+|.+|..--|...|.++|+++.+++|.+.+++-..+..|....++++|......+.+..+.. .  .+.+.+..    
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea  575 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA  575 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence            3466677666677777777877777777777777777777777777777777644433221111 0  11111111    


Q ss_pred             cCChhHHHHHHHHHhhcHHH---HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEE---QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  159 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  159 (507)
                      .+..+.+..+...++-+|.+   +..+|.+|...|+|.-|++.|.++...+|++.-..+..|.+...+|+|.+|+..+..
T Consensus       576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~  655 (1238)
T KOG1127|consen  576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL  655 (1238)
T ss_pred             cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            11234455556666655554   667778888888888888888888778887777777777777778888888887777


Q ss_pred             HHhcCCCcHH
Q psy12000        160 YLAQKPTSRI  169 (507)
Q Consensus       160 ~l~~~p~~~~  169 (507)
                      ++........
T Consensus       656 ii~~~s~e~~  665 (1238)
T KOG1127|consen  656 IIYAFSLERT  665 (1238)
T ss_pred             HHHHHHHHHH
Confidence            7765444433

>KOG1156|consensus

Probab=99.65  E-value=8.1e-13  Score=128.99  Aligned_cols=398  Identities=13%  Similarity=0.069  Sum_probs=252.1

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.-+.-.|..++|.+.++..+.+|+..|.+++..-.+|..+..+|+-++|.........+++...+.          
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC----------   77 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC----------   77 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh----------
Confidence            3455567778999999999999999999999999999999999999999999999887776544433211          


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                      +-.+|.++...++|++||++|+.++...|+|..++..++.+..++++++.....-.+.++.+|.
T Consensus        78 ----------------wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~  141 (700)
T KOG1156|consen   78 ----------------WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS  141 (700)
T ss_pred             ----------------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence                            4468889999999999999999999999999999999999999999999999999999999998


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC---hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV---IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL  243 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~  243 (507)
                      .-..+.-.|....-.|++..|...++...++.-....+.   ..+..+....+....|.+++|.+.+....+...+.   
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk---  218 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK---  218 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH---
Confidence            876666556666667777777776666543211000000   11233334445556666666666665443321111   


Q ss_pred             HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000        244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ  323 (507)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~  323 (507)
                                                           .....-.|..+++.+++++|+..+...+..+|++-.++..+-.
T Consensus       219 -------------------------------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  219 -------------------------------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK  261 (700)
T ss_pred             -------------------------------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence                                                 0011124667777777777777777777777777655554444


Q ss_pred             HHHhhCCHHHHH-HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHH----------------HcCCcHH-----
Q psy12000        324 AKCALGQYKEAE-EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSH----------------KLGDEKS-----  381 (507)
Q Consensus       324 ~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------~~~~~~~-----  381 (507)
                      ++..-.+--++. ..|...-+..+...-.-.  +......-.++......+.                .+-+.++     
T Consensus       262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~l  339 (700)
T KOG1156|consen  262 ALGKIKDMLEALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFL  339 (700)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHH
Confidence            554222223333 444433222211110000  0000000000000000000                0000000     


Q ss_pred             ---HHHHHHHhhhc------------HHHH-----HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000        382 ---LMEYHQKLEDS------------LEEQ-----LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  441 (507)
Q Consensus       382 ---~~~~~~~l~~~------------~~~~-----~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g  441 (507)
                         +..+...+...            ++..     ..++.-+...|+++.|..+.+.++...|.-+..+..-|.++-..|
T Consensus       340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G  419 (700)
T KOG1156|consen  340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAG  419 (700)
T ss_pred             HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcC
Confidence               00011111111            1111     122333334589999999999999999999999998999999999


Q ss_pred             cchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      ..++|...++.+.+.+--|- ++|-+..-|+.
T Consensus       420 ~l~eAa~~l~ea~elD~aDR-~INsKcAKYmL  450 (700)
T KOG1156|consen  420 LLDEAAAWLDEAQELDTADR-AINSKCAKYML  450 (700)
T ss_pred             ChHHHHHHHHHHHhccchhH-HHHHHHHHHHH
Confidence            99999999999988863332 33444444443

>KOG0550|consensus

Probab=99.63  E-value=4.9e-14  Score=130.43  Aligned_cols=273  Identities=15%  Similarity=0.042  Sum_probs=188.9

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCChh
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDEK   87 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   87 (507)
                      ....|..++...+|..|+..|..+++..|++...|.+.+.+++..|+|++|.-.+++.....+.. +.........+...
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            34478899999999999999999999999999999999999999999999999887764322110 11111111111111


Q ss_pred             HHHHHHH------------HHh---h-----c--H---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH
Q psy12000         88 SLMEYHQ------------KLE---D-----S--L---EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM  142 (507)
Q Consensus        88 ~~~~~~~------------~l~---~-----~--~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  142 (507)
                      .+.++..            .+.   .     .  |   ...+..+.++...|++++|.+.--.+++.++.+.++++..|.
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence            1111111            111   0     0  1   114556778888888888888888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhcc
Q psy12000        143 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEE  222 (507)
Q Consensus       143 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  222 (507)
                      |++..++.++|+..|++.+..+|++..+-.+.              .             .+..-+++-.-|.-..++|+
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~--------------~-------------~~k~le~~k~~gN~~fk~G~  264 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLDPDHQKSKSAS--------------M-------------MPKKLEVKKERGNDAFKNGN  264 (486)
T ss_pred             ccccccchHHHHHHHhhhhccChhhhhHHhHh--------------h-------------hHHHHHHHHhhhhhHhhccc
Confidence            88888888888888888888888887532110              0             01111345556667788999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH
Q psy12000        223 HQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL  302 (507)
Q Consensus       223 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~  302 (507)
                      |.+|.+.+.+....+|...-..+..                                    +...|.+..+.|+..+|+.
T Consensus       265 y~~A~E~Yteal~idP~n~~~nakl------------------------------------Y~nra~v~~rLgrl~eais  308 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKL------------------------------------YGNRALVNIRLGRLREAIS  308 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHH------------------------------------HHHhHhhhcccCCchhhhh
Confidence            9999888876544444321111111                                    1235666777888888888


Q ss_pred             HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      .-+.++++++.-..++...|.|+..+++|++|.+.|+++...
T Consensus       309 dc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  309 DCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888887766667777888888888888888888888644

>KOG1129|consensus

Probab=99.63  E-value=2.7e-14  Score=128.14  Aligned_cols=266  Identities=12%  Similarity=0.048  Sum_probs=211.2

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCC---CCCh-----hh--HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLP---NPPE-----DT--EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~---p~~~-----~~--~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      .-++++...|...|-...+..++.+   |...     +-  ...+|.||+++|.+.+|.+.++......+          
T Consensus       185 Fey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~----------  254 (478)
T KOG1129|consen  185 FEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP----------  254 (478)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC----------
Confidence            4567888999999988777766543   3221     11  24699999999999999998876644322          


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                                       .++.++.|+.+|....+...|+..|.+.+...|.+......+|.++..++++++|.++|+.++
T Consensus       255 -----------------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl  317 (478)
T KOG1129|consen  255 -----------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL  317 (478)
T ss_pred             -----------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence                             133367788999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHH
Q psy12000        162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEY  241 (507)
Q Consensus       162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~  241 (507)
                      +.+|.+.+++--.+..+|..++.+-|...+..+++     ....+|+.+.|+|.+.+--+++|-++..+.+....-.   
T Consensus       318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat---  389 (478)
T KOG1129|consen  318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT---  389 (478)
T ss_pred             hcCCccceeeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc---
Confidence            99999999876666678888899999998887653     3445778899999998888888888777654311100   


Q ss_pred             HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHH
Q psy12000        242 ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNF  321 (507)
Q Consensus       242 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~l  321 (507)
                                                      .+.  .....|+++|.+....|++.-|-.+|+-++..++++..++.||
T Consensus       390 --------------------------------~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL  435 (478)
T KOG1129|consen  390 --------------------------------QPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL  435 (478)
T ss_pred             --------------------------------Ccc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence                                            000  0112356678888888999999999999999999998899999


Q ss_pred             HHHHHhhCCHHHHHHHHHhhcccCC
Q psy12000        322 AQAKCALGQYKEAEEMFLLVQNEGL  346 (507)
Q Consensus       322 g~~~~~~g~~~~A~~~~~~~~~~~~  346 (507)
                      |..-.+.|+.++|...+..+.+..|
T Consensus       436 avL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  436 AVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHHHhhcCchHHHHHHHHHhhhhCc
Confidence            9999999999999999998765443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.3e-13  Score=121.24  Aligned_cols=265  Identities=15%  Similarity=0.131  Sum_probs=183.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ  220 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  220 (507)
                      |.-+.-.++.++|+..|-.+++.+|...                                       ++.+.||.+|-+.
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~---------------------------------------e~~ltLGnLfRsR   82 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETF---------------------------------------EAHLTLGNLFRSR   82 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhh---------------------------------------HHHHHHHHHHHhc
Confidence            4444455677777777777776666544                                       4566777777777


Q ss_pred             ccHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000        221 EEHQEAFDLIKNLE--PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK  298 (507)
Q Consensus       221 ~~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  298 (507)
                      |+.|.|+.+-+.+.  |+.+.  --+..+...+|+.....+-++.|+.+|..+.+.+..  ...+...|..+|...++|+
T Consensus        83 GEvDRAIRiHQ~L~~spdlT~--~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~  158 (389)
T COG2956          83 GEVDRAIRIHQTLLESPDLTF--EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWE  158 (389)
T ss_pred             chHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHH
Confidence            77777777666553  22222  234455666777777777788888888766542211  1345567889999999999


Q ss_pred             HHHHHHHHhhhhcCCCc-----hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000        299 DVILYLSSIKSYYTSDD-----SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS  373 (507)
Q Consensus       299 ~Ai~~~~~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  373 (507)
                      +||+.-.+..+..+.+.     .++-.++..+....+.++|...+++++..++...-                       
T Consensus       159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-----------------------  215 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR-----------------------  215 (389)
T ss_pred             HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-----------------------
Confidence            99998888887776653     22334666677778899999999888765542210                       


Q ss_pred             HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh-hHHHHHhhccccccchhHHHHHHH
Q psy12000        374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAM  452 (507)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-~~~~la~~y~~~g~~~~A~~~~~~  452 (507)
                                           ..+.+|.++...|+|+.|++.++.+++.+|++.. +.-.+-.||.++|+.++....+..
T Consensus       216 ---------------------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         216 ---------------------ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             ---------------------hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                                 1133456777789999999999999999999864 666788899999999999999999


Q ss_pred             HHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCC
Q psy12000        453 YLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGP  493 (507)
Q Consensus       453 ~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (507)
                      +.+.+|+....+. ++.+--...-.+.|.+-+...++.-|.
T Consensus       275 ~~~~~~g~~~~l~-l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         275 AMETNTGADAELM-LADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHccCCccHHHH-HHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            9998887665433 444444434466677777777776664

>KOG1840|consensus

Probab=99.62  E-value=1.1e-13  Score=137.06  Aligned_cols=255  Identities=19%  Similarity=0.122  Sum_probs=176.4

Q ss_pred             CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC-ChhHHHHHHHHHhhcHHH-HHHHHHHHHHh
Q psy12000         36 PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLEDSLEE-QLCLASIHFLR  113 (507)
Q Consensus        36 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~la~~~~~~  113 (507)
                      .|.-..+..+++..|...|+|++|+..++.+...         +....+ ....           ... ...+|.+|..+
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~---------l~k~~G~~hl~-----------va~~l~~~a~~y~~~  254 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI---------LEKTSGLKHLV-----------VASMLNILALVYRSL  254 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------HHHccCccCHH-----------HHHHHHHHHHHHHHh
Confidence            4555567778999999999999999999877431         000011 0000           011 33589999999


Q ss_pred             hcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHhhh
Q psy12000        114 CHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ--------KPTSRIALNLKACN  177 (507)
Q Consensus       114 g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~a~~~~a~~  177 (507)
                      ++|++|+.+|++++.+.        |....++.+||.+|.+.|++++|..++++++++        .|.-...+.-.+.+
T Consensus       255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            99999999999999863        445578899999999999999999999998753        22222345556777


Q ss_pred             hhhccChHHHHHhhHHHHHhh---CCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000        178 TYKLFTSRAAENQLKPILVSI---LPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~  254 (507)
                      ....+.+++|...+++..+.+   .....+..+..+-+||.+|..+|+|++|.+.++++                     
T Consensus       335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a---------------------  393 (508)
T KOG1840|consen  335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA---------------------  393 (508)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------------------
Confidence            778888888888888765422   22333345667888888999999999988887653                     


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhh----hhcCCCc---hHHHHHHHHHHh
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIK----SYYTSDD---SFNFNFAQAKCA  327 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~----~~~~~~~---~~~~~lg~~~~~  327 (507)
                                ++..+...... ....-...-.||..+...+++.+|...|..+.    ...|+.+   ..+.|||.+|..
T Consensus       394 ----------i~~~~~~~~~~-~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~  462 (508)
T KOG1840|consen  394 ----------IQILRELLGKK-DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA  462 (508)
T ss_pred             ----------HHHHHhcccCc-ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence                      11111110000 00000011247888888899998888776544    2344443   556789999999


Q ss_pred             hCCHHHHHHHHHhhc
Q psy12000        328 LGQYKEAEEMFLLVQ  342 (507)
Q Consensus       328 ~g~~~~A~~~~~~~~  342 (507)
                      +|++++|+++.++++
T Consensus       463 ~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  463 QGNYEAAEELEEKVL  477 (508)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999999876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1.8e-12  Score=116.61  Aligned_cols=201  Identities=13%  Similarity=0.061  Sum_probs=157.0

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHHhhhh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-----ALNLKACNT  178 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----a~~~~a~~~  178 (507)
                      +-.|.-+....+.++|++.|-++++.+|+..++...||.++-+.|..|.|+.+-+.++ ..|+.+.     +..-+|.-+
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence            4456667778899999999999999999999999999999999999999999987765 4565543     556667778


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhhccCc
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI-LKAVVQVTIGQDTGS  257 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~g~~~~~  257 (507)
                      +..|-++.|+..|..+.     +.+.+.+.+.-.|..+|..+.++++|++..+++....++.+. ..+..+         
T Consensus       118 m~aGl~DRAE~~f~~L~-----de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy---------  183 (389)
T COG2956         118 MAAGLLDRAEDIFNQLV-----DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY---------  183 (389)
T ss_pred             HHhhhhhHHHHHHHHHh-----cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH---------
Confidence            88899999999887653     334556678888999999999999999988765333332211 011111         


Q ss_pred             HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000        258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM  337 (507)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  337 (507)
                                                 -.||..+....+.+.|+..++++.+.+|+...+...+|.+....|+|++|++.
T Consensus       184 ---------------------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~  236 (389)
T COG2956         184 ---------------------------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA  236 (389)
T ss_pred             ---------------------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH
Confidence                                       12566666777888899999999888888877777889999999999999999


Q ss_pred             HHhhcccCC
Q psy12000        338 FLLVQNEGL  346 (507)
Q Consensus       338 ~~~~~~~~~  346 (507)
                      ++.++..++
T Consensus       237 ~e~v~eQn~  245 (389)
T COG2956         237 LERVLEQNP  245 (389)
T ss_pred             HHHHHHhCh
Confidence            998876654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.59  E-value=1.3e-12  Score=128.53  Aligned_cols=302  Identities=12%  Similarity=-0.029  Sum_probs=174.8

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHH--
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSF--   77 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~--   77 (507)
                      .+.-.+..+|.++...|+++.|...+.++.+..|.+   .+..+..+.++...|++++|...++++....|... .+.  
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~   83 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLH   83 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHh
Confidence            344566778999999999999999999988877755   35677789999999999999999988754333321 111  


Q ss_pred             ----HHHHhcCChhHHHHHHHHH-hhcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC
Q psy12000         78 ----HLSHKLGDEKSLMEYHQKL-EDSLE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY  149 (507)
Q Consensus        78 ----~~~~~~~~~~~~~~~~~~l-~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  149 (507)
                          ......+............ ...+.   ....+|.++..+|++++|+..+++++..+|+++.++..+|.+++..|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence                0011111111111111111 11111   133556666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000        150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL  229 (507)
Q Consensus       150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  229 (507)
                      +++|+..+++.+...|..+.                                   .....+..++.++..+|++++|+..
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSM-----------------------------------LRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcc-----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            66666666666655543211                                   1112456778888888888888888


Q ss_pred             HHhcCCCCh--HHHHHH-HH-HHHHhhhccCcH---HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH
Q psy12000        230 IKNLEPSVP--QEYILK-AV-VQVTIGQDTGSR---EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL  302 (507)
Q Consensus       230 l~~~~~~~~--~~~~~~-~~-~~~~~g~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~  302 (507)
                      +++.....+  ...... .. .....+......   ..++.+.......  .+... ........+.++...|+.++|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~--~~~~~-~~~~~~~~a~~~~~~~~~~~a~~  285 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH--FPDHG-LAFNDLHAALALAGAGDKDALDK  285 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh--cCccc-chHHHHHHHHHHhcCCCHHHHHH
Confidence            876521111  111111 11 222222222211   2222222211111  01111 11111246788889999999999


Q ss_pred             HHHHhhhhcCC---------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        303 YLSSIKSYYTS---------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       303 ~~~~~~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      .++.+......         ........+.++..+|++++|+..+..++.
T Consensus       286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88776532211         234456679999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.58  E-value=3.7e-13  Score=115.77  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      .+.||.-|..+|++..|...++++|+.+|++..++..+|.+|.+.|+.+.|.+.|+++++++|++...+|..|..++.+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999988877777777777


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      .+++|...|+.++.   ...-+..+..+.|+|.+.++.|+.+.|...+++
T Consensus       118 ~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r  164 (250)
T COG3063         118 RPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR  164 (250)
T ss_pred             ChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence            77777777766532   122233445666666666666666666666654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.58  E-value=8.5e-14  Score=128.41  Aligned_cols=170  Identities=15%  Similarity=0.116  Sum_probs=126.9

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      .+..+.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++....+....       
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------  105 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-------  105 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-------
Confidence            35677789999999999999999999999999876   57899999999999999999999987543332210       


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHhCCchhHHH-----------------
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--------CHYQEAIDIYKRILLDHKDLLALN-----------------  137 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~-----------------  137 (507)
                                      .+..++.+|.+++..        |++++|++.|++++..+|++..+.                 
T Consensus       106 ----------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~  169 (235)
T TIGR03302       106 ----------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKE  169 (235)
T ss_pred             ----------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHH
Confidence                            001144556666654        899999999999999999876442                 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHH
Q psy12000        138 VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYH  217 (507)
Q Consensus       138 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (507)
                      ..+|.+++..|++++|+..+++++...|+.+                                    ..+++++.+|.++
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------------------------------~~~~a~~~l~~~~  213 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTP------------------------------------ATEEALARLVEAY  213 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc------------------------------------chHHHHHHHHHHH
Confidence            2455666666666666666666665555432                                    2346777888888


Q ss_pred             HhhccHHHHHHHHHhcC
Q psy12000        218 LKQEEHQEAFDLIKNLE  234 (507)
Q Consensus       218 ~~~~~~~~A~~~l~~~~  234 (507)
                      ...|++++|...++.+.
T Consensus       214 ~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       214 LKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            88888888888776653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156|consensus

Probab=99.57  E-value=2.5e-11  Score=118.80  Aligned_cols=408  Identities=14%  Similarity=0.021  Sum_probs=247.7

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHh---
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHK---   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~---   82 (507)
                      ++.-..|-....+|+-++|.......++.++.+.-.|.-+|.++..-++|++|+++|+.|....+.+. ++-.++..   
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45566799999999999999999999999999999999999999999999999999999987655553 44333322   


Q ss_pred             cCChhH-HHHHHHHHhhcH---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---Cch-----hHHHHHHHHHHHhcCCH
Q psy12000         83 LGDEKS-LMEYHQKLEDSL---EEQLCLASIHFLRCHYQEAIDIYKRILLDH---KDL-----LALNVYGAMCYYKLDYY  150 (507)
Q Consensus        83 ~~~~~~-~~~~~~~l~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~-----~~~~~~la~~~~~~g~~  150 (507)
                      +++... +..-...++..|   ..++..|..+...|++..|..+.+...+..   |+.     .........+....|.+
T Consensus       122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~  201 (700)
T KOG1156|consen  122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL  201 (700)
T ss_pred             HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence            222222 222223333333   337889999999999999999998887765   443     34455566777888999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHH-HH
Q psy12000        151 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAF-DL  229 (507)
Q Consensus       151 ~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~  229 (507)
                      ++|++.+...-...-+........+.+.+++++.++|...+..++.     ..|.+.+-+..+-.++..-.+--+++ ..
T Consensus       202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l  276 (700)
T KOG1156|consen  202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-----RNPDNLDYYEGLEKALGKIKDMLEALKAL  276 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-----hCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            9998887665433333333445678899999999999988887642     23444344444444443222222333 22


Q ss_pred             HHhcC---CC------ChHHHH----HHHHHHH------Hhh------------hccCcHHHHHH-HHHHHHHhCCC---
Q psy12000        230 IKNLE---PS------VPQEYI----LKAVVQV------TIG------------QDTGSREMVKA-AQALFQLVGSS---  274 (507)
Q Consensus       230 l~~~~---~~------~~~~~~----~~~~~~~------~~g------------~~~~~~~~~~~-A~~~~~~~~~~---  274 (507)
                      +....   |.      .|-...    +.-.+..      ..|            +......-+++ +..+...+...   
T Consensus       277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f  356 (700)
T KOG1156|consen  277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF  356 (700)
T ss_pred             HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence            22211   11      000000    0000000      000            00001112222 22222222211   


Q ss_pred             ------cccccc--hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC
Q psy12000        275 ------QSECDT--VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL  346 (507)
Q Consensus       275 ------~~~~~~--~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~  346 (507)
                            ..++.+  ++....++..+-..|+++.|..+++.+....|.-...+...|.++...|+.++|..++..+.+.+.
T Consensus       357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence                  011211  223356888899999999999999999888787777777789999999999999999999987665


Q ss_pred             CchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHHHHhhhcHHHH--HHHHHHHHhHhhHHHHHHHHHHHhhcC
Q psy12000        347 KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYHQKLEDSLEEQ--LCLASIHFLRCHYQEAIDIYKRILLDH  423 (507)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~Ai~~~~~~l~~~  423 (507)
                      .+.++. +--++-..+.+..++|.++..+..... .+++.+..+.-   -|  ..-|..++.+++|-.|++-|..+....
T Consensus       437 aDR~IN-sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc---mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~  512 (700)
T KOG1156|consen  437 ADRAIN-SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC---MWFQLEDGEAYLRQNKLGLALKKFHEIEKHY  512 (700)
T ss_pred             hhHHHH-HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh---HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            443332 011211223455566666655544332 22222211110   01  112455666788888888887765533

>PLN02789 farnesyltranstransferase

Probab=99.56  E-value=9.2e-13  Score=124.99  Aligned_cols=241  Identities=12%  Similarity=0.031  Sum_probs=165.6

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  184 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~  184 (507)
                      +-.++...+++++|+..+.++|..+|++..++...+.++..+| ++++++..+++++..+|++..+++.++.+..+.+  
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~--  120 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG--  120 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC--
Confidence            3345677889999999999999999999999999999999998 6799999999999999988765543322211000  


Q ss_pred             HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHH
Q psy12000        185 RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAA  264 (507)
Q Consensus       185 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  264 (507)
                                                           +                                          
T Consensus       121 -------------------------------------~------------------------------------------  121 (320)
T PLN02789        121 -------------------------------------P------------------------------------------  121 (320)
T ss_pred             -------------------------------------c------------------------------------------
Confidence                                                 0                                          


Q ss_pred             HHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        265 QALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                                                    ..+++++.+++++.+.+|++..++.++|.++...|++++|++.+.++++.
T Consensus       122 ------------------------------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        122 ------------------------------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             ------------------------------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                                          00123455555666666666666666777777777777777777777665


Q ss_pred             CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000        345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK  424 (507)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p  424 (507)
                      ++.+...|... +            + +..+++.          +..             .....++++++.++++..+|
T Consensus       172 d~~N~sAW~~R-~------------~-vl~~~~~----------l~~-------------~~~~~e~el~y~~~aI~~~P  214 (320)
T PLN02789        172 DVRNNSAWNQR-Y------------F-VITRSPL----------LGG-------------LEAMRDSELKYTIDAILANP  214 (320)
T ss_pred             CCCchhHHHHH-H------------H-HHHhccc----------ccc-------------ccccHHHHHHHHHHHHHhCC
Confidence            55443332110 0            0 0000000          000             00123567888999999999


Q ss_pred             chhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC------------------ChHHHHH
Q psy12000        425 DLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF------------------TSRAAEN  482 (507)
Q Consensus       425 ~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~------------------~~~~~~~  482 (507)
                      ++..++.+++.++..    +++..+|++++.++++..|+++.|+.+++.++-...                  ..+.|..
T Consensus       215 ~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  294 (320)
T PLN02789        215 RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQA  294 (320)
T ss_pred             CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHH
Confidence            999999999999988    566778999999999999999999999999987532                  1244666


Q ss_pred             HHHHHHHhCCCC
Q psy12000        483 QLKPILVSAGPR  494 (507)
Q Consensus       483 ~~~~~~~~~~~~  494 (507)
                      .++.|-..+|=|
T Consensus       295 ~~~~l~~~d~ir  306 (320)
T PLN02789        295 VCSELEVADPMR  306 (320)
T ss_pred             HHHHHHhhCcHH
Confidence            666665566644

>KOG1125|consensus

Probab=99.55  E-value=1.3e-13  Score=133.16  Aligned_cols=218  Identities=12%  Similarity=-0.005  Sum_probs=160.3

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCChhH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDEKS   88 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (507)
                      +..|.-++..|+..+|+=+|+.+++.+|.+.++|..||.+...+++-..|+..++++.+.++.+. ++..++..+-+++.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45788899999999999999999999999999999999999999999999999999988777663 56666655543332


Q ss_pred             HHHHH----HHHhhcHHH-HHHHH---------HHHHHhhcHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHH
Q psy12000         89 LMEYH----QKLEDSLEE-QLCLA---------SIHFLRCHYQEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDV  152 (507)
Q Consensus        89 ~~~~~----~~l~~~~~~-~~~la---------~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~  152 (507)
                      -.++.    .-|...|.- ++..+         .-....-.+..-.++|-++....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            22222    222221110 00000         011111223344566667777777  678888888888888888888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        153 SQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       153 A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      |+..|+.+|..+|++..-++.+|.++..-.+..+|+.++.++.     .+.|....+|+|||..++..|.|.+|+..|-.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-----qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-----QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-----hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            8888888888888888888888888777777888888887764     45666778899999999999999999988754

>KOG2376|consensus

Probab=99.55  E-value=2.7e-11  Score=117.33  Aligned_cols=388  Identities=14%  Similarity=0.065  Sum_probs=213.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc---chHHHHHHhcCCh
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT---RLSFHLSHKLGDE   86 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~~~~~~~   86 (507)
                      +--++|.|++++.++|+..++.   .++.+..+....|++++++|+|++|...|+...++....   ....++...    
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----  155 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----  155 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----
Confidence            4579999999999999999983   355555678899999999999999999999875432211   111111100    


Q ss_pred             hHHHH--HHHHHhhcH----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------c---------hhHHHHHHHHHHH
Q psy12000         87 KSLME--YHQKLEDSL----EEQLCLASIHFLRCHYQEAIDIYKRILLDHK------D---------LLALNVYGAMCYY  145 (507)
Q Consensus        87 ~~~~~--~~~~l~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~---------~~~~~~~la~~~~  145 (507)
                      .....  ..+.+...+    +..++.|+++...|+|.+|++.+++++.++.      +         -..+...++.++.
T Consensus       156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ  235 (652)
T KOG2376|consen  156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ  235 (652)
T ss_pred             HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            00011  112222222    2388999999999999999999999965432      1         1246778999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCcHHH-----HHHHhhhhhhccChHHHHHhhHHHHHh---hCC-CC-CCChhHhHHHHHH
Q psy12000        146 KLDYYDVSQEQVAMYLAQKPTSRIA-----LNLKACNTYKLFTSRAAENQLKPILVS---ILP-PL-IDVIPESRLNLVI  215 (507)
Q Consensus       146 ~~g~~~~A~~~~~~~l~~~p~~~~a-----~~~~a~~~~~~~~~~~A~~~l~~~~~~---~~~-~~-~~~~~~~~~~l~~  215 (507)
                      .+|+..+|.+++..+++.+|.+...     .|+.+..-.+.-....+...++....+   .+. .+ ...-.....|.+.
T Consensus       236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l  315 (652)
T KOG2376|consen  236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL  315 (652)
T ss_pred             HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988877641     222222211111111222222211000   000 00 0011124566676


Q ss_pred             HHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc
Q psy12000        216 YHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR  295 (507)
Q Consensus       216 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  295 (507)
                      +.+-.+..+.+.+....+.+..|....-.-..-...-    ......+|++++....+..+. ........++...+.+|
T Consensus       316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~----~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~g  390 (652)
T KOG2376|consen  316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV----REKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQG  390 (652)
T ss_pred             HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcC
Confidence            7777777777777777766666543211000000000    001223344433322211111 01222233455666666


Q ss_pred             CHHHHHHHHH--------HhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhh
Q psy12000        296 SFKDVILYLS--------SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTR  367 (507)
Q Consensus       296 ~~~~Ai~~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  367 (507)
                      +++.|++.+.        ++.+... .|.+.-.+-..+++.++-+-|.+.+.++++                        
T Consensus       391 n~~~A~~il~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~------------------------  445 (652)
T KOG2376|consen  391 NPEVALEILSLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIK------------------------  445 (652)
T ss_pred             CHHHHHHHHHHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHH------------------------
Confidence            6666666555        2222211 122222233445555555555555544431                        


Q ss_pred             HHHHHHHHcCCcHHH-HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000        368 LSFHLSHKLGDEKSL-MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS  446 (507)
Q Consensus       368 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A  446 (507)
                          -+......... ...+.          ..+.+....|+-++|...++++++.+|++.++...+..+|.++. .++|
T Consensus       446 ----~~~~~~t~s~~l~~~~~----------~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka  510 (652)
T KOG2376|consen  446 ----WWRKQQTGSIALLSLMR----------EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA  510 (652)
T ss_pred             ----HHHHhcccchHHHhHHH----------HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence                11111111110 11111          11234445589999999999999999999999888888887774 5666


Q ss_pred             HHH
Q psy12000        447 QEQ  449 (507)
Q Consensus       447 ~~~  449 (507)
                      +..
T Consensus       511 ~~l  513 (652)
T KOG2376|consen  511 ESL  513 (652)
T ss_pred             HHH
Confidence            543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.54  E-value=8.6e-12  Score=122.74  Aligned_cols=304  Identities=10%  Similarity=-0.033  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      ..+..+|.++...|++++|...+.++....|.   ..+..+..|.++...|++++|.+.+++++..+|++..++.. +..
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence            34778899999999999999999999988874   35567778999999999999999999999999999877654 334


Q ss_pred             hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCc
Q psy12000        178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGS  257 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~  257 (507)
                      ++..|....+.......... .....+....+...+|.++..+|++++|...+++....+|.                  
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------------------  146 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------------------  146 (355)
T ss_pred             HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------
Confidence            44333332222222222111 22333444455666777888888888887777654222221                  


Q ss_pred             HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch----HHHHHHHHHHhhCCHHH
Q psy12000        258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS----FNFNFAQAKCALGQYKE  333 (507)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~----~~~~lg~~~~~~g~~~~  333 (507)
                                            ...+...+|.++...|++++|+.++++.....|.++.    .+..+|.++..+|++++
T Consensus       147 ----------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         147 ----------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             ----------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence                                  1122345789999999999999999998877664332    24468999999999999


Q ss_pred             HHHHHHhhcccCC-Cchhhhh-h--hhcc------cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12000        334 AEEMFLLVQNEGL-KNDYVYI-S--HLTK------CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH  403 (507)
Q Consensus       334 A~~~~~~~~~~~~-~~~~~~~-~--~l~~------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  403 (507)
                      |+..|++++...+ ....... .  ++..      ......+++.+........+. ..         ..-.....+...
T Consensus       205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~---------~~~~~~~~a~~~  274 (355)
T cd05804         205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HG---------LAFNDLHAALAL  274 (355)
T ss_pred             HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-cc---------chHHHHHHHHHH
Confidence            9999999864332 1111100 0  0000      000001111111000000000 00         000001223344


Q ss_pred             HhHhhHHHHHHHHHHHhhcC-C--------chhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        404 FLRCHYQEAIDIYKRILLDH-K--------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       404 ~~~~~~~~Ai~~~~~~l~~~-p--------~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      ...|+.++|...++.+.... +        ....+....|++++..|++++|+..+..++..
T Consensus       275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44578888888888775421 1        12345566799999999999999999988864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.49  E-value=1.9e-12  Score=119.45  Aligned_cols=177  Identities=14%  Similarity=0.065  Sum_probs=133.7

Q ss_pred             hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhh
Q psy12000        281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISH  355 (507)
Q Consensus       281 ~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~  355 (507)
                      ...+..+|..++..|++++|+..++.+....|+++   .+++.+|.++...|++++|+..|+++++..|.+....  .-.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            34556789999999999999999999998888765   4678899999999999999999999986655332211  001


Q ss_pred             hcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhh------
Q psy12000        356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL------  429 (507)
Q Consensus       356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~------  429 (507)
                      +|.++..            .             +          +.++...|++++|+..|++++..+|++...      
T Consensus       113 ~g~~~~~------------~-------------~----------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302       113 RGLSNYN------------Q-------------I----------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             HHHHHHH------------h-------------c----------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            1111100            0             0          011222377888999999999888887532      


Q ss_pred             -----------HHHHHhhccccccchhHHHHHHHHHhcCCCch---hhhhHHHhhhhhcCChHHHHHHHHHHHHhCC
Q psy12000        430 -----------NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKLFTSRAAENQLKPILVSAG  492 (507)
Q Consensus       430 -----------~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                                 ...+|.+|++.|++++|+..++.+++.+|+++   .++..++.++..+++.+.|...++.|....|
T Consensus       158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                       13578889999999999999999999988764   6888999999999999999887777766655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.47  E-value=7.9e-13  Score=111.13  Aligned_cols=123  Identities=11%  Similarity=0.098  Sum_probs=107.4

Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHH
Q psy12000         26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC  105 (507)
Q Consensus        26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (507)
                      ...|+++++.+|++   ++.+|.++...|++++|+..|+++....+..                          +..+..
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------~~a~~~   63 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--------------------------WRAHIA   63 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------HHHHHH
Confidence            46889999999975   6678999999999999999999876544332                          223678


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      +|.++...|++++|+..|++++..+|+++.+++++|.|+..+|++++|++.|++++...|+++..+..++.+
T Consensus        64 lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         64 LAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999877665544

>KOG1127|consensus

Probab=99.45  E-value=1.1e-10  Score=119.20  Aligned_cols=224  Identities=12%  Similarity=0.016  Sum_probs=165.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHhcCCh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHKLGDE   86 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~~~   86 (507)
                      ..+|.+..+.+ .+-..|...|=++++++|+-..+|..+|.+|...-+...|..+|.++-+.+... ......+..+-..
T Consensus       461 ~~~w~a~~~~r-K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~  539 (1238)
T KOG1127|consen  461 SEFWVALGCMR-KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE  539 (1238)
T ss_pred             HHHHHHHHHhh-hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc
Confidence            34555554444 447889999999999999999999999999999999999999999986643321 2222223232222


Q ss_pred             hHHHHHHHHH----hhc-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         87 KSLMEYHQKL----EDS-----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        87 ~~~~~~~~~l----~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                      .....+....    ++.     ..++..+|-.|...+++..|+..|+.++..+|.+...+..+|.+|...|++..|++.|
T Consensus       540 ~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF  619 (1238)
T KOG1127|consen  540 STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF  619 (1238)
T ss_pred             ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence            2222222111    122     2346679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCC--CCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILP--PLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      .++...+|.+..+.+..+.+..-.|.+++|...++.++...-.  .......+.+...+..+..+|=+.+|.+.+++
T Consensus       620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek  696 (1238)
T KOG1127|consen  620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK  696 (1238)
T ss_pred             hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            9999999999998888898988999999999888876531100  01111234555666666666666666666654

>PLN02789 farnesyltranstransferase

Probab=99.45  E-value=1.3e-11  Score=117.23  Aligned_cols=187  Identities=9%  Similarity=-0.104  Sum_probs=138.4

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc-cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG-MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH   93 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (507)
                      ++...+.+++|+..+.++++.+|.+..+|.+.+.++..+| ++++++..+.++....+++.                   
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-------------------  106 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-------------------  106 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-------------------
Confidence            4666889999999999999999999999999999999998 68999999888765433321                   


Q ss_pred             HHHhhcHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000         94 QKLEDSLEEQLCLASIHFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus        94 ~~l~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                             ..+...+.+....|+.  ++++++++++++.+|.+..++.+.+.+...+|++++|++.++++++.+|.+..++
T Consensus       107 -------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        107 -------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             -------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence                   1134455555556653  7789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcc---Ch----HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHh
Q psy12000        172 NLKACNTYKLF---TS----RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKN  232 (507)
Q Consensus       172 ~~~a~~~~~~~---~~----~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~  232 (507)
                      +.++.+..+.+   ..    +.+.....+.+     ...|.+..+|..++.++..    .++..+|++.+.+
T Consensus       180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI-----~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAI-----LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHH-----HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence            88887765542   22    22333332332     2345555666666666655    2334445444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=1.1e-12  Score=110.29  Aligned_cols=124  Identities=13%  Similarity=0.067  Sum_probs=105.8

Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHH
Q psy12000        302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKS  381 (507)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  381 (507)
                      .+++++.+.+|++   ++.+|.++...|++++|+..|++++..+|.+...+                             
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-----------------------------   61 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH-----------------------------   61 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-----------------------------
Confidence            3677777777764   56789999999999999999999987766543222                             


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                                     ..+|.++...|++++|+..|++++..+|+++.+++++|.|+.++|++++|+..|+.+++..|+++
T Consensus        62 ---------------~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         62 ---------------IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             ---------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence                           22445667779999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHhhhh
Q psy12000        462 IALNLKACNTY  472 (507)
Q Consensus       462 ~a~~~~~~~~~  472 (507)
                      ..+..++.+..
T Consensus       127 ~~~~~~~~~~~  137 (144)
T PRK15359        127 SWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHH
Confidence            99988887654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.44  E-value=1.8e-11  Score=128.12  Aligned_cols=231  Identities=10%  Similarity=-0.054  Sum_probs=137.6

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      ...+...+...+++++|+..++..++.+|+...+++.+|.++.+.+++.+|..+  .+..                    
T Consensus        34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------------   91 (906)
T PRK14720         34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------------   91 (906)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------------
Confidence            344677777889999999999988999999988999999988888887777654  3222                    


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                          +.....++ .++++|.+.+...|++..+++.+|.||-++|++++|...++++++.+|+++
T Consensus        92 --------------------~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~  150 (906)
T PRK14720         92 --------------------SFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP  150 (906)
T ss_pred             --------------------hcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH
Confidence                                11222223 344444444444555555555555555555555555555555555555555


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChH---HHHH-H
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQ---EYIL-K  244 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~---~~~~-~  244 (507)
                      .+++.+|..+... +.+.|...+.++.                   ..|+..++|.++.+...++-..+|.   .+.. .
T Consensus       151 ~aLNn~AY~~ae~-dL~KA~~m~~KAV-------------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~  210 (906)
T PRK14720        151 EIVKKLATSYEEE-DKEKAITYLKKAI-------------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE  210 (906)
T ss_pred             HHHHHHHHHHHHh-hHHHHHHHHHHHH-------------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence            5555555554444 5555554444332                   1244555666666655554322222   1110 0


Q ss_pred             HHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q psy12000        245 AVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQA  324 (507)
Q Consensus       245 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~  324 (507)
                      ..+....|        +.++..+                +.-+=.+|...++|++++.+++.+++.+|.+..+.+.++.+
T Consensus       211 ~ki~~~~~--------~~~~~~~----------------~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~  266 (906)
T PRK14720        211 RKVLGHRE--------FTRLVGL----------------LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF  266 (906)
T ss_pred             HHHHhhhc--------cchhHHH----------------HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence            00111111        1111111                11244678888999999999999999999888788888888


Q ss_pred             HH
Q psy12000        325 KC  326 (507)
Q Consensus       325 ~~  326 (507)
                      |.
T Consensus       267 y~  268 (906)
T PRK14720        267 YK  268 (906)
T ss_pred             HH
Confidence            87

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.44  E-value=2.5e-10  Score=114.62  Aligned_cols=307  Identities=14%  Similarity=0.076  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      ..+..+.++...|++++|++.+++....-+|...+.-..|.++.++|++++|...+..++..+|++...+..+..+....
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence            35667788899999999999999988888999999999999999999999999999999999999988766554443111


Q ss_pred             c-----ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHH-Hh-cCCCChHHHHHHHHHHHHhhhc
Q psy12000        182 F-----TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLI-KN-LEPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       182 ~-----~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l-~~-~~~~~~~~~~~~~~~~~~~g~~  254 (507)
                      .     ..+.-...++.+.. ..+..     .+-..+...+..-.+|......+ .. +...-|..+...-..+.   +.
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~-~yp~s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~  156 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAE-KYPRS-----DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DP  156 (517)
T ss_pred             cccccccHHHHHHHHHHHHH-hCccc-----cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---Ch
Confidence            1     22333334443321 11110     00111111222223344333322 21 22233332221111111   11


Q ss_pred             cCcHHHHH-HHHHHHHHhCCCc---------cc-ccc-hhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH
Q psy12000        255 TGSREMVK-AAQALFQLVGSSQ---------SE-CDT-VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA  322 (507)
Q Consensus       255 ~~~~~~~~-~A~~~~~~~~~~~---------~~-~~~-~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg  322 (507)
                      .. ...+. ....+........         .. |.+ +++++.+|..|-..|++++|+++++++....|..+..++..|
T Consensus       157 ~K-~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka  235 (517)
T PF12569_consen  157 EK-AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA  235 (517)
T ss_pred             hH-HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            10 11111 1222222221110         11 111 345567899999999999999999999999999888999999


Q ss_pred             HHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHHHHhhhcHHHH--HHH
Q psy12000        323 QAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYHQKLEDSLEEQ--LCL  399 (507)
Q Consensus       323 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~l  399 (507)
                      .++-+.|++.+|.+.++.+...+..+.++..- .++...+.|+.+.|..+.......+ .....+..+.-   .|  ..-
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK-~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc---~Wf~~e~  311 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELDLADRYINSK-CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC---MWFETEC  311 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH-HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH---HHHHHHH
Confidence            99999999999999999998777655444322 2344456677777766554433222 11100000000   01  123


Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhc
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLD  422 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~  422 (507)
                      |..++..|++..|++.|..+.+.
T Consensus       312 a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  312 AEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH
Confidence            56777789999999999888753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.43  E-value=2.8e-10  Score=114.37  Aligned_cols=262  Identities=15%  Similarity=0.005  Sum_probs=169.0

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH-HHHhc-
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH-LSHKL-   83 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~-   83 (507)
                      .++.++...++...|++++|++.+++....-++...+....|.+++++|++++|...+...++..|.+..++. +.... 
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            4566777888888888888888888877777777777888888888888888888888777654444432211 11111 


Q ss_pred             ---C----ChhHHHHHHHHHh------------------------------------hcHHHHHHHHHHHHHhhcHHHHH
Q psy12000         84 ---G----DEKSLMEYHQKLE------------------------------------DSLEEQLCLASIHFLRCHYQEAI  120 (507)
Q Consensus        84 ---~----~~~~~~~~~~~l~------------------------------------~~~~~~~~la~~~~~~g~~~~A~  120 (507)
                         .    ...........+.                                    ..|.....+-.+|....+..-..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence               0    0111111111111                                    11222333444444333333333


Q ss_pred             HHHHHHHHh----------------CCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        121 DIYKRILLD----------------HKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       121 ~~~~~~l~~----------------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      +++......                .|.. .++++.+|+.|-..|++++|++++++++...|+.+..+.++|.|+-+.|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            333333321                1211 36778999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC--hHH--------HH--HHHHHHHHh
Q psy12000        184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV--PQE--------YI--LKAVVQVTI  251 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~--~~~--------~~--~~~~~~~~~  251 (507)
                      +.+|...++.+..     ++...-......+..+++.|+.++|...+..+...+  |..        |.  -.|.++...
T Consensus       244 ~~~Aa~~~~~Ar~-----LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  244 LKEAAEAMDEARE-----LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HHHHHHHHHHHHh-----CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887742     222222233456778999999999999988774322  221        21  246666666


Q ss_pred             hhccCcHHHHHHHHHHHHHhC
Q psy12000        252 GQDTGSREMVKAAQALFQLVG  272 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~  272 (507)
                      |+...+...+....+.|..+.
T Consensus       319 ~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             hhHHHHHHHHHHHHHHHHHHh
Confidence            666655555555555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=4.3e-12  Score=112.52  Aligned_cols=125  Identities=10%  Similarity=0.013  Sum_probs=102.4

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED   98 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (507)
                      .++.++++..++++++.+|++++.|..+|.++...|++++|+..++++....+.+                         
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------------  106 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------------------  106 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence            4566888889999999999999999999999999999999999988875533322                         


Q ss_pred             cHHHHHHHHHHH-HHhhc--HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         99 SLEEQLCLASIH-FLRCH--YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        99 ~~~~~~~la~~~-~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                       +..+..+|.++ ...|+  +++|+.++++++..+|+++.+++++|.+++..|++++|+..++++++.+|.+..
T Consensus       107 -~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        107 -AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             -HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence             22256677764 66677  589999999999999999999999999999999999999999999988776654

>KOG1915|consensus

Probab=99.39  E-value=3.8e-08  Score=93.40  Aligned_cols=428  Identities=9%  Similarity=-0.022  Sum_probs=259.0

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      --..++++..|...|+++|..+..+..+|...+.+-++.+....|..+..++...-|...                    
T Consensus        82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--------------------  141 (677)
T KOG1915|consen   82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--------------------  141 (677)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--------------------
Confidence            334577888888888888888888888888888888888888888888877754322210                    


Q ss_pred             HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000         95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  174 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~  174 (507)
                            ..++..-.+-...|+...|.++|++=+...|+. .++..--..-.+-+.++.|.++|++++-.+|+... +...
T Consensus       142 ------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~-wiky  213 (677)
T KOG1915|consen  142 ------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSN-WIKY  213 (677)
T ss_pred             ------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHH-HHHH
Confidence                  112222333445688888999999988888874 34444444556678888999999999888887654 2233


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHH--HHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHH
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRL--NLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQV  249 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~  249 (507)
                      +....+-|+..-+...++.+++...    +......+  ..|..-..++.++.|.-+++-.   .|++....+.++.+.+
T Consensus       214 arFE~k~g~~~~aR~VyerAie~~~----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f  289 (677)
T KOG1915|consen  214 ARFEEKHGNVALARSVYERAIEFLG----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF  289 (677)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            4444556666666666665543111    11111122  2233334567778776666532   2443322222322222


Q ss_pred             --HhhhccCcHHHHHHHHH------HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------
Q psy12000        250 --TIGQDTGSREMVKAAQA------LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------  315 (507)
Q Consensus       250 --~~g~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------  315 (507)
                        ..|+..    -++.++-      +=..+..++...|++.-   .-..-...|+-+.-.+.|+++...-|...      
T Consensus       290 EKqfGd~~----gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd---ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~  362 (677)
T KOG1915|consen  290 EKQFGDKE----GIEDAIVGKRKFQYEKEVSKNPYNYDSWFD---YLRLEESVGDKDRIRETYERAIANVPPASEKRYWR  362 (677)
T ss_pred             HHHhcchh----hhHHHHhhhhhhHHHHHHHhCCCCchHHHH---HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence              233322    2233322      22334555555555433   23444456788888888887664443221      


Q ss_pred             -hHHHHHHHHHH---hhCCHHHHHHHHHhhcccCCCchhhhh-hhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH-Hh
Q psy12000        316 -SFNFNFAQAKC---ALGQYKEAEEMFLLVQNEGLKNDYVYI-SHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ-KL  389 (507)
Q Consensus       316 -~~~~~lg~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~l  389 (507)
                       -+++.+-.+++   ...+.+.+.+.|+.+++.-|-..+.+. -||..+.+           -.+..+.+.+..++- .+
T Consensus       363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f-----------eIRq~~l~~ARkiLG~AI  431 (677)
T KOG1915|consen  363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF-----------EIRQLNLTGARKILGNAI  431 (677)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-----------HHHHcccHHHHHHHHHHh
Confidence             11222333333   257889999999988876543333321 12211100           011112222222221 13


Q ss_pred             hhcHHHHHHHHHHHH--hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        390 EDSLEEQLCLASIHF--LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       390 ~~~~~~~~~l~~~~~--~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      +.-|.+.+..+.|.+  ..++|+....+|++.++-.|.+.......|..-..+|+.|.|...|.-+++..--+.--+..+
T Consensus       432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk  511 (677)
T KOG1915|consen  432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK  511 (677)
T ss_pred             ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence            333444444443333  447999999999999999999999999889999999999999999999997643333334569


Q ss_pred             HhhhhhcCC--hHHHHHHHHHHHHhCC
Q psy12000        468 ACNTYKLFT--SRAAENQLKPILVSAG  492 (507)
Q Consensus       468 ~~~~~~~~~--~~~~~~~~~~~~~~~~  492 (507)
                      +.+.|++..  ...+++.|+.+++..+
T Consensus       512 aYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  512 AYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            999999885  7788889999998654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.35  E-value=1.2e-10  Score=122.03  Aligned_cols=189  Identities=11%  Similarity=-0.021  Sum_probs=128.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCcc
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPS  362 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  362 (507)
                      +...||.||-++|++++|+..++++++.+|+++.++.++|..|... +.++|++++.+++...               ..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---------------i~  181 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---------------IK  181 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---------------Hh
Confidence            3456899999999999999999999999999999999999999999 9999999999986421               11


Q ss_pred             chhhhHHHHHHHHc---CCc--HHHHHHHHHhhhcHH------HHHHHHHHHH-hHhhHHHHHHHHHHHhhcCCchhhhH
Q psy12000        363 RAKTRLSFHLSHKL---GDE--KSLMEYHQKLEDSLE------EQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLLALN  430 (507)
Q Consensus       363 ~~~~~~A~~~~~~~---~~~--~~~~~~~~~l~~~~~------~~~~l~~~~~-~~~~~~~Ai~~~~~~l~~~p~~~~~~  430 (507)
                      .+++..+.++..++   ...  +....+.+.+.....      -..-+ +-+| ..++|++++.+++.+++.+|++..+.
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l-~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL-YEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH-HHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence            12222222222221   111  112222222221110      00011 1222 34689999999999999999999998


Q ss_pred             HHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCCCccc
Q psy12000        431 VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPPGADF  503 (507)
Q Consensus       431 ~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (507)
                      ..++.||.  ++|.. ...++.++++-           .+.=.-.+...+.+.|.+.+.-.||+-++-+ +|-
T Consensus       261 ~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~-~WG  318 (906)
T PRK14720        261 EELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYHR-TWG  318 (906)
T ss_pred             HHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEEc-CCC
Confidence            88998887  55555 56666666541           1100002457888899999999999988887 664

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=1.8e-11  Score=102.30  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=105.0

Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHH
Q psy12000         27 GIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCL  106 (507)
Q Consensus        27 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  106 (507)
                      +.|+++++.+|++..+.+.+|.+++..|++++|+..++++....+.+                          +..+..+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l   57 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--------------------------SRYWLGL   57 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--------------------------HHHHHHH
Confidence            46889999999999999999999999999999999998764422221                          2236789


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       107 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      |.++..+|++++|+.+|++++..+|+++..++.+|.++...|++++|+..++++++.+|++...
T Consensus        58 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            9999999999999999999999999999999999999999999999999999999999998764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340|consensus

Probab=99.33  E-value=8.7e-09  Score=92.12  Aligned_cols=182  Identities=16%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      .....+|..||++...-.+..|.+......+|.||+...+|.+|..++++.....|... .+                  
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qY------------------   80 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QY------------------   80 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HH------------------
Confidence            36788999999999999999998888899999999999999999999988654333210 00                  


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHH
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP--TSRIALN  172 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~  172 (507)
                             .+..|..+++.+.+..|+.....+... |. .....-.-+-+.+..+++..+..+.++    -|  +.....+
T Consensus        81 -------rlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~i  148 (459)
T KOG4340|consen   81 -------RLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQI  148 (459)
T ss_pred             -------HHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhc
Confidence                   233455666667777776666554432 21 122222334455566666666554443    34  2233345


Q ss_pred             HHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        173 LKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      -.||+.++.|+++.|..-|+...     +.....|-..++++.++.+.|+|+.|++...++
T Consensus       149 n~gCllykegqyEaAvqkFqaAl-----qvsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  149 NLGCLLYKEGQYEAAVQKFQAAL-----QVSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             cchheeeccccHHHHHHHHHHHH-----hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            55677777777777766665543     233344455667777777777777777666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=2.6e-09  Score=99.44  Aligned_cols=293  Identities=15%  Similarity=0.079  Sum_probs=185.1

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      |-.-+..|+|.+|.+...+.-+..+...-.+..-++..-++|+++.|-.++.++.+.+.+..                  
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~------------------  152 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT------------------  152 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch------------------
Confidence            34444556666666666655544444444444555555556666666555555433211110                  


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HH-
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-IA-  170 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~a-  170 (507)
                             ....+..+.+...+|+++.|..-..+++...|.++.+......+|...|+|.+...++.++-+..--+. .+ 
T Consensus       153 -------l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~  225 (400)
T COG3071         153 -------LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA  225 (400)
T ss_pred             -------HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence                   011566788999999999999999999999999999999999999999999999999988876432221 11 


Q ss_pred             -HHHHhhh--hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHH
Q psy12000        171 -LNLKACN--TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVV  247 (507)
Q Consensus       171 -~~~~a~~--~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~  247 (507)
                       +...++.  +-+..+-..+....+..  +-.+......|+....++.-+++.|++++|.+.+.+..+..-+..+.. .+
T Consensus       226 ~le~~a~~glL~q~~~~~~~~gL~~~W--~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-~~  302 (400)
T COG3071         226 RLEQQAWEGLLQQARDDNGSEGLKTWW--KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-LI  302 (400)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHH--HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-HH
Confidence             1111211  11111222222211111  111222234566777788889999999999998887654433322111 11


Q ss_pred             HHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000        248 QVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA  327 (507)
Q Consensus       248 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~  327 (507)
                        -.-...+...-.+.++...+..++.+      .....||..+++.+.|.+|-++|+.+.+..|+...+ ..+|.++.+
T Consensus       303 --~~l~~~d~~~l~k~~e~~l~~h~~~p------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~-~~la~~~~~  373 (400)
T COG3071         303 --PRLRPGDPEPLIKAAEKWLKQHPEDP------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDY-AELADALDQ  373 (400)
T ss_pred             --hhcCCCCchHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHH
Confidence              11112223334445555555555443      123468999999999999999999999888877654 559999999


Q ss_pred             hCCHHHHHHHHHhhc
Q psy12000        328 LGQYKEAEEMFLLVQ  342 (507)
Q Consensus       328 ~g~~~~A~~~~~~~~  342 (507)
                      +|+..+|.+.++.++
T Consensus       374 ~g~~~~A~~~r~e~L  388 (400)
T COG3071         374 LGEPEEAEQVRREAL  388 (400)
T ss_pred             cCChHHHHHHHHHHH
Confidence            999999999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=1.7e-10  Score=102.39  Aligned_cols=125  Identities=10%  Similarity=-0.021  Sum_probs=87.2

Q ss_pred             hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000        294 LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS  373 (507)
Q Consensus       294 ~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  373 (507)
                      .++.++++..+++....+|++...++.+|.+|...|++++|+..|++++...|.+...+                     
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~---------------------  110 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY---------------------  110 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---------------------
Confidence            56667777777777777777777777778888788888888888877766554432222                     


Q ss_pred             HHcCCcHHHHHHHHHhhhcHHHHHHHHHHH-HhHhh--HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHH
Q psy12000        374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIH-FLRCH--YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQV  450 (507)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~--~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~  450 (507)
                                             ..++.+. +..|+  +++|+..++++++.+|+++.+++.+|.+++++|++++|+..|
T Consensus       111 -----------------------~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370        111 -----------------------AALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             -----------------------HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence                                   1223343 34455  477888888888888877777777788888888888888888


Q ss_pred             HHHHhcCCCchh
Q psy12000        451 AMYLAQKPTSRI  462 (507)
Q Consensus       451 ~~~l~~~P~~~~  462 (507)
                      +++++..|.+..
T Consensus       168 ~~aL~l~~~~~~  179 (198)
T PRK10370        168 QKVLDLNSPRVN  179 (198)
T ss_pred             HHHHhhCCCCcc
Confidence            887777766554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.25  E-value=9.9e-11  Score=109.81  Aligned_cols=248  Identities=19%  Similarity=0.210  Sum_probs=133.3

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh----
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNP-PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE----   86 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~----   86 (507)
                      --+.+|..|+|..++..++ ....+|. ..+..+++.++++.+|+++..+.......  ++.......++..+..+    
T Consensus         7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchH
Confidence            3456888999999998887 3333332 33567899999999999998776654433  22222222222222111    


Q ss_pred             hHHHHHHHHHhhcH-----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         87 KSLMEYHQKLEDSL-----EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        87 ~~~~~~~~~l~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      ..+....+.+.+..     --.+..|.++...|++++|++.+.+.     ++.+.......+++++++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11111111111110     01334445555556666665555432     334444445555566666666666555555


Q ss_pred             hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh--ccHHHHHHHHHhcCCCChH
Q psy12000        162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ--EEHQEAFDLIKNLEPSVPQ  239 (507)
Q Consensus       162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~l~~~~~~~~~  239 (507)
                      +.+.+.......                                  ++|     +.+..  +++.+|+-.|+++....+.
T Consensus       159 ~~~eD~~l~qLa----------------------------------~aw-----v~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  159 QIDEDSILTQLA----------------------------------EAW-----VNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             CCSCCHHHHHHH----------------------------------HHH-----HHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             hcCCcHHHHHHH----------------------------------HHH-----HHHHhCchhHHHHHHHHHHHHhccCC
Confidence            544443321111                                  111     11111  2344454444443221111


Q ss_pred             HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH
Q psy12000        240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF  319 (507)
Q Consensus       240 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~  319 (507)
                                                              +......+|.+++.+|+|++|.+.+..+...+|+++.++.
T Consensus       200 ----------------------------------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  200 ----------------------------------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             ----------------------------------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             ----------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence                                                    1112235789999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCH-HHHHHHHHhhcccCC
Q psy12000        320 NFAQAKCALGQY-KEAEEMFLLVQNEGL  346 (507)
Q Consensus       320 ~lg~~~~~~g~~-~~A~~~~~~~~~~~~  346 (507)
                      |++.+...+|+. +.+.+++.++....|
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            999999999998 556666666654443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130|consensus

Probab=99.25  E-value=2e-10  Score=106.63  Aligned_cols=278  Identities=16%  Similarity=0.071  Sum_probs=165.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      .-|.-+++.|++...+..|+.+++...++.    .+|..||.+|+.+++|++|+++-..=+       ..    +.   .
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-------tl----ar---~   87 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-------TL----AR---L   87 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-------HH----HH---H
Confidence            356778999999999999999999987653    567789999999999999988643211       10    00   0


Q ss_pred             ccC-hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC---------CChHHHHHHHHHHHH
Q psy12000        181 LFT-SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP---------SVPQEYILKAVVQVT  250 (507)
Q Consensus       181 ~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~---------~~~~~~~~~~~~~~~  250 (507)
                      +|+ ..+                    ...--|||..+-..|.|++|+.++.+-..         ....+++..|.+|..
T Consensus        88 lgdklGE--------------------AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha  147 (639)
T KOG1130|consen   88 LGDKLGE--------------------AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA  147 (639)
T ss_pred             hcchhcc--------------------ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence            010 000                    01123455555556666666554432100         011223334444444


Q ss_pred             hhhcc-------------CcHHHHHHHHHHHHHhCC----CcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh----
Q psy12000        251 IGQDT-------------GSREMVKAAQALFQLVGS----SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS----  309 (507)
Q Consensus       251 ~g~~~-------------~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~----  309 (507)
                      .|...             +....++.|.++|..-.+    .......-.++-.||++|+..|+|+.||..-+.-+.    
T Consensus       148 kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e  227 (639)
T KOG1130|consen  148 KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE  227 (639)
T ss_pred             cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence            44321             123456677777642111    000000011223578888899999999876553322    


Q ss_pred             hcCC--CchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH
Q psy12000        310 YYTS--DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ  387 (507)
Q Consensus       310 ~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  387 (507)
                      +...  .-.++.|+|.++.-.|+++.|+++|++.+..                            +.++++..       
T Consensus       228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L----------------------------Aielg~r~-------  272 (639)
T KOG1130|consen  228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL----------------------------AIELGNRT-------  272 (639)
T ss_pred             hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH----------------------------HHHhcchh-------
Confidence            2211  1246678899999999999999999875321                            11111111       


Q ss_pred             HhhhcHHHH--HHHHHHHHhHhhHHHHHHHHHHHhhc------CCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        388 KLEDSLEEQ--LCLASIHFLRCHYQEAIDIYKRILLD------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       388 ~l~~~~~~~--~~l~~~~~~~~~~~~Ai~~~~~~l~~------~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                           ++.+  ++++..++...+|++||.++.+-+.+      .-......+.+|.+|-.+|..++|+.+.+..+++
T Consensus       273 -----vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  273 -----VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             -----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 1222  45677888888899999998876542      2334556778899999999999998877766543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.24  E-value=1.1e-10  Score=97.42  Aligned_cols=120  Identities=19%  Similarity=0.154  Sum_probs=100.6

Q ss_pred             HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000        303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL  382 (507)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  382 (507)
                      .++++...+|++....+.+|.++...|++++|+..|++++..++.+...+                              
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~------------------------------   54 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW------------------------------   54 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH------------------------------
Confidence            46677778888877888899999999999999999999876554332211                              


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                                    ..++.+++..|++++|+..|++++..+|+++..++.+|.+|...|++++|+..++.+++.+|+++.
T Consensus        55 --------------~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        55 --------------LGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                          223456667799999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhH
Q psy12000        463 ALNL  466 (507)
Q Consensus       463 a~~~  466 (507)
                      ...+
T Consensus       121 ~~~~  124 (135)
T TIGR02552       121 YSEL  124 (135)
T ss_pred             HHHH
Confidence            6443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.22  E-value=2.8e-10  Score=106.80  Aligned_cols=160  Identities=18%  Similarity=0.124  Sum_probs=95.7

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      ..|.++...|++++|++.+.+.     .+.........+|...++++.|.+.++.+.+.+.++...              
T Consensus       107 ~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--------------  167 (290)
T PF04733_consen  107 LAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--------------  167 (290)
T ss_dssp             HHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--------------
Confidence            3567788888899888866554     233444556788888899999988888775543221111              


Q ss_pred             hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                                                    ++..+|+.+..|  ++++|.-+|+++.+..|.++.+...+|.|+..+|++
T Consensus       168 ------------------------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~  217 (290)
T PF04733_consen  168 ------------------------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY  217 (290)
T ss_dssp             ------------------------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred             ------------------------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence                                          122233444433  566677777776666666666666666677777777


Q ss_pred             hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCCh-HHHHHHHHHHHHhCCCC
Q psy12000        444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS-RAAENQLKPILVSAGPR  494 (507)
Q Consensus       444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  494 (507)
                      ++|.+.++++++.+|+++.++-.+..+..-+++. ...++.+..+....|.|
T Consensus       218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            7777777777777777666655555554444443 44555566666666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.22  E-value=3e-10  Score=118.34  Aligned_cols=140  Identities=9%  Similarity=-0.070  Sum_probs=120.7

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      +.++.+.+|.+....|.+++|...++.+++..|++..++..++.++.+++++++|...++++....+.+           
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-----------  153 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-----------  153 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----------
Confidence            356778899999999999999999999999999999999999999999999999999988886654443           


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                                     ...++.+|.++...|+|++|+.+|++++..+|+++.++..+|.++..+|+.++|...|+++++..
T Consensus       154 ---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        154 ---------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             ---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                           22366788899999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcHHH
Q psy12000        165 PTSRIA  170 (507)
Q Consensus       165 p~~~~a  170 (507)
                      .+-...
T Consensus       219 ~~~~~~  224 (694)
T PRK15179        219 GDGARK  224 (694)
T ss_pred             CcchHH
Confidence            655554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.21  E-value=1.4e-09  Score=96.05  Aligned_cols=177  Identities=14%  Similarity=0.021  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHH
Q psy12000         24 QALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ  103 (507)
Q Consensus        24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (507)
                      .+...+-.....+|.+.++ ..++..++..|+-+.+..+..++....+..                          ++..
T Consensus        51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------------------------~~ll  103 (257)
T COG5010          51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------------------------RELL  103 (257)
T ss_pred             HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------------------------HHHH
Confidence            3555555556678888888 888888999988888887776643222211                          1113


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      ..+|......|+|.+|+..++++....|++..++..+|.+|.+.|++++|..-|.++++..|..+...+.++.+++-.|+
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            34788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      .+.|+..+....     ...+....+..||+.+...+|++++|.++..+
T Consensus       184 ~~~A~~lll~a~-----l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         184 LEDAETLLLPAY-----LSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHHHH-----hCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            999999888763     23344567889999999999999999887754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.21  E-value=6e-08  Score=90.50  Aligned_cols=298  Identities=14%  Similarity=0.070  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHHhhhhhhc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA-LNLKACNTYKL  181 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~~a~~~~~~  181 (507)
                      ...-|.+-...|+|.+|.....+.-+..+...-.+..-+.+--++|+++.|-.++.++-+..|++..+ ....+.+....
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            44566777788999999999888666666555566666778889999999999999998886666553 45567788888


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh---HHHHHHHHHHHHhhhccCcH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP---QEYILKAVVQVTIGQDTGSR  258 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~  258 (507)
                      |++..|..-+.++.     ...|.++++..-...+|++.|++++...++.++.+...   .+..                
T Consensus       167 ~d~~aA~~~v~~ll-----~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------  225 (400)
T COG3071         167 RDYPAARENVDQLL-----EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------  225 (400)
T ss_pred             CCchhHHHHHHHHH-----HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------
Confidence            88888888777664     35677778777777899999999999988876533211   1100                


Q ss_pred             HHHH-HHHH-HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        259 EMVK-AAQA-LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       259 ~~~~-~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                       .++ +|.. +++...+.                    +.-+.=....+..-..-.+++.....++.-+...|++++|.+
T Consensus       226 -~le~~a~~glL~q~~~~--------------------~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~  284 (400)
T COG3071         226 -RLEQQAWEGLLQQARDD--------------------NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE  284 (400)
T ss_pred             -HHHHHHHHHHHHHHhcc--------------------ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence             000 0110 11111000                    000000123333322233456666678888899999999999


Q ss_pred             HHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHH
Q psy12000        337 MFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY  416 (507)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~  416 (507)
                      +.+.+++...++. ..                  .++..+                            .-++...=++..
T Consensus       285 ~i~~~Lk~~~D~~-L~------------------~~~~~l----------------------------~~~d~~~l~k~~  317 (400)
T COG3071         285 IIEDALKRQWDPR-LC------------------RLIPRL----------------------------RPGDPEPLIKAA  317 (400)
T ss_pred             HHHHHHHhccChh-HH------------------HHHhhc----------------------------CCCCchHHHHHH
Confidence            9998876543322 00                  011110                            013455556666


Q ss_pred             HHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHh
Q psy12000        417 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS  490 (507)
Q Consensus       417 ~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (507)
                      ++.++..|+++.+++.+|..|++.+.|.+|.+.++.+++..|+... ++.++.++-.++....|+..+++.+-.
T Consensus       318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7777778888888888888888888888888888888877776544 466788888777777777777766643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.19  E-value=7.9e-08  Score=106.74  Aligned_cols=384  Identities=12%  Similarity=-0.021  Sum_probs=202.2

Q ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh---cCChhHHHHHHHHHhh-----cHHHHHHHHHHHHH
Q psy12000         41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK---LGDEKSLMEYHQKLED-----SLEEQLCLASIHFL  112 (507)
Q Consensus        41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-----~~~~~~~la~~~~~  112 (507)
                      ..+...+..+...|++.+|+..+..+.+......++...+..   .+....+..+...+..     .+......+.++..
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS  421 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence            445566777888899998888887775533222222222211   2222333333333321     12224567888888


Q ss_pred             hhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHhhhh
Q psy12000        113 RCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-----IALNLKACNT  178 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~~a~~~  178 (507)
                      .|++++|...+.++....+.         ...+...+|.++...|++++|...+++++...|...     .+....+.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            99999999999888664321         234455678888999999999999999887544432     2445567777


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                      ...|+++.|...+..... ......+.  ...+..+++.++..+|++++|...+.+...                     
T Consensus       502 ~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~---------------------  559 (903)
T PRK04841        502 HCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ---------------------  559 (903)
T ss_pred             HHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------
Confidence            788899888888777542 11111111  123456778888889999998887754210                     


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----C-CchHHHHHHHHHHhhCCH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----S-DDSFNFNFAQAKCALGQY  331 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~-~~~~~~~lg~~~~~~g~~  331 (507)
                                ............ .......+|.++...|++++|...+..+.....    . ....+..+|.++...|++
T Consensus       560 ----------~~~~~~~~~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~  628 (903)
T PRK04841        560 ----------LIEEQHLEQLPM-HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL  628 (903)
T ss_pred             ----------HHHHhccccccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH
Confidence                      000000000000 000011234444555555555554444332211    0 112223345555555555


Q ss_pred             HHHHHHHHhhccc--CCCchhhhhhh---h-cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh
Q psy12000        332 KEAEEMFLLVQNE--GLKNDYVYISH---L-TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL  405 (507)
Q Consensus       332 ~~A~~~~~~~~~~--~~~~~~~~~~~---l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  405 (507)
                      ++|...+.++...  .......+...   + ...+...|..+.|..................     ..-...++.++..
T Consensus       629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-----~~~~~~~a~~~~~  703 (903)
T PRK04841        629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL-----QGQWRNIARAQIL  703 (903)
T ss_pred             HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH-----HHHHHHHHHHHHH
Confidence            5555555444211  00000000000   0 0001111222222222111111000000000     0001223456666


Q ss_pred             HhhHHHHHHHHHHHhhcC------CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        406 RCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~------p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                      .|++++|+..+++++...      ++...+...+|.++.+.|+.++|...++++++.....-.
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            789999999999988632      223446777899999999999999999999988755433

>KOG0553|consensus

Probab=99.18  E-value=2.3e-10  Score=102.87  Aligned_cols=114  Identities=21%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      -|.-....++|.+|+..|.++++++|.++.+|.+.|.+|.++|+++.|++.++.++..++..                  
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------------  148 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------------  148 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------------------
Confidence            47788888999999999999999999999999999999999999999999988886544321                  


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD  151 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  151 (507)
                              ...+..||.+|..+|++.+|++.|+++|.++|++.....+|..+-.++++.+
T Consensus       149 --------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  149 --------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             --------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence                    1225678889999999999999999999999998877777766666555544

>KOG1128|consensus

Probab=99.17  E-value=1.2e-09  Score=108.69  Aligned_cols=211  Identities=20%  Similarity=0.119  Sum_probs=170.5

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      ..+|..+...|-...|+..|++.        +.|-....||...|+-.+|.....+-.+.++..+.+-.++....+..-.
T Consensus       402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y  473 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY  473 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence            44799999999999999999876        6788899999999999999998877766555544444444433333332


Q ss_pred             HHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         90 MEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        90 ~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      +.+-+.-.. +......+|...+.+++|.++...++..+..+|-....++.+|.|..++++++.|.+.|..++..+|++.
T Consensus       474 EkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~  553 (777)
T KOG1128|consen  474 EKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA  553 (777)
T ss_pred             HHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence            222221111 1223567777778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      .+++.+++.+.+.++..+|-..++.+.+     .+-.+...|.|...+..+.|.+++|++.+.++
T Consensus       554 eaWnNls~ayi~~~~k~ra~~~l~EAlK-----cn~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  554 EAWNNLSTAYIRLKKKKRAFRKLKEALK-----CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             hhhhhhhHHHHHHhhhHHHHHHHHHHhh-----cCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            9999999999999999999888887643     23445678899999999999999999988765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.17  E-value=4.1e-09  Score=96.55  Aligned_cols=196  Identities=13%  Similarity=0.086  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL---NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK  174 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~  174 (507)
                      ...+..|...+..|+|++|++.|++++...|..+.+   .+.+|.+|++.+++++|+..++++++.+|+++.   +++++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            347788999999999999999999999999987654   489999999999999999999999999999875   45555


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhh
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI-LKAVVQVTIGQ  253 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~g~  253 (507)
                      |.+++..+..     .+...     ...+.           ....+....+|+..++++....|+... ..+...+...+
T Consensus       113 g~~~~~~~~~-----~~~~~-----~~~~~-----------~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~  171 (243)
T PRK10866        113 GLTNMALDDS-----ALQGF-----FGVDR-----------SDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK  171 (243)
T ss_pred             HHhhhhcchh-----hhhhc-----cCCCc-----------cccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence            5543332210     00000     00000           001223344566666665444443211 11110000000


Q ss_pred             ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCC
Q psy12000        254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQ  330 (507)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~  330 (507)
                           +.  -|.                 ....+|..|++.|.|.-|+.-++.+.+..|+.   +.+++.++.+|..+|.
T Consensus       172 -----~~--la~-----------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        172 -----DR--LAK-----------------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             -----HH--HHH-----------------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence                 00  000                 01246889999999999999999998888765   4677889999999999


Q ss_pred             HHHHHHHHHhh
Q psy12000        331 YKEAEEMFLLV  341 (507)
Q Consensus       331 ~~~A~~~~~~~  341 (507)
                      .++|.+....+
T Consensus       228 ~~~a~~~~~~l  238 (243)
T PRK10866        228 NAQADKVAKII  238 (243)
T ss_pred             hHHHHHHHHHH
Confidence            99999887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.16  E-value=1.1e-09  Score=98.07  Aligned_cols=158  Identities=17%  Similarity=0.162  Sum_probs=109.6

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      +++..+..|..++..|+|.+|+..|+++....|.++   ++.+.+|.+++..|++++|+..+++.....|....      
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------
Confidence            456788899999999999999999999999988875   78899999999999999999998875432222110      


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHH-----------HHHhhcHHHHHHHHHHHHHhCCchhH---------------
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASI-----------HFLRCHYQEAIDIYKRILLDHKDLLA---------------  135 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~-----------~~~~g~~~~A~~~~~~~l~~~p~~~~---------------  135 (507)
                                       .+..++.+|.+           ...++...+|+..|+.++...|++.-               
T Consensus        78 -----------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   78 -----------------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             -----------------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence                             01112333333           34456667999999999999997642               


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHhhhhhhccChH
Q psy12000        136 --LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYKLFTSR  185 (507)
Q Consensus       136 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a~~~~~~~~~~  185 (507)
                        --+.+|..|++.|.|..|+..++.+++..|+.+.   ++..++..+.++|..+
T Consensus       141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence              1245789999999999999999999999998875   3333344444444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.15  E-value=5.7e-10  Score=92.09  Aligned_cols=95  Identities=9%  Similarity=-0.091  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +..+.+|..++..|++++|...|+-+...+|.+...+++||.|+-.+|+|++|+..|.++..++|+++.++...|.+++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             ccChHHHHHhhHHHH
Q psy12000        181 LFTSRAAENQLKPIL  195 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~  195 (507)
                      .|+.+.|...|+.++
T Consensus       116 lG~~~~A~~aF~~Ai  130 (157)
T PRK15363        116 CDNVCYAIKALKAVV  130 (157)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            888888888877654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=1e-09  Score=114.47  Aligned_cols=143  Identities=7%  Similarity=-0.148  Sum_probs=103.5

Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHH
Q psy12000         28 IYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLA  107 (507)
Q Consensus        28 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la  107 (507)
                      -.....+..|.+++++.++|.+....|.+++|+..++.+....|..                          ...+..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------------------------~~a~~~~a  127 (694)
T PRK15179         74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------------------------SEAFILML  127 (694)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------------------------HHHHHHHH
Confidence            3333444567777777778888888888888877777665433322                          12245677


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA  187 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A  187 (507)
                      .++.+.+++++|+..+++++...|++..+++.+|.+..++|++++|+..|++++..+|+++.++.-+|..+...|+.++|
T Consensus       128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            77777888888888888888888888888888888888888888888888888777777777777777777777777777


Q ss_pred             HHhhHHHHH
Q psy12000        188 ENQLKPILV  196 (507)
Q Consensus       188 ~~~l~~~~~  196 (507)
                      ...|++.++
T Consensus       208 ~~~~~~a~~  216 (694)
T PRK15179        208 RDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHH
Confidence            777777643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.14  E-value=2.7e-09  Score=95.39  Aligned_cols=182  Identities=18%  Similarity=0.214  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK  174 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~  174 (507)
                      +.++..|..++..|+|.+|+..|++++...|.+   +.+.+.+|.++++.|++++|+..++++++..|+++.   +++++
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            447889999999999999999999999998864   578999999999999999999999999999999875   45555


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHh
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTI  251 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~  251 (507)
                      |.+++....  ..   +                       .....++...+|+..++.+.   |.++...  .+..    
T Consensus        86 g~~~~~~~~--~~---~-----------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--~A~~----  131 (203)
T PF13525_consen   86 GLSYYKQIP--GI---L-----------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAE--EAKK----  131 (203)
T ss_dssp             HHHHHHHHH--HH---H------------------------TT---HHHHHHHHHHHHHHHH-TTSTTHH--HHHH----
T ss_pred             HHHHHHhCc--cc---h-----------------------hcccChHHHHHHHHHHHHHHHHCcCchHHH--HHHH----
Confidence            554433200  00   0                       01223455566777766653   3333211  1100    


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhh
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCAL  328 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~  328 (507)
                              .+.....   .+.         .....+|..|++.|.|..|+..++.+.+..|+.+   .++..++.+|.++
T Consensus       132 --------~l~~l~~---~la---------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  132 --------RLAELRN---RLA---------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             --------HHHHHHH---HHH---------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHH---HHH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence                    0000000   000         0012478999999999999999999999888874   5667789999999


Q ss_pred             CCHHHHHH
Q psy12000        329 GQYKEAEE  336 (507)
Q Consensus       329 g~~~~A~~  336 (507)
                      |..+.|..
T Consensus       192 ~~~~~a~~  199 (203)
T PF13525_consen  192 GLKQAADT  199 (203)
T ss_dssp             T-HHHHHH
T ss_pred             CChHHHHH
Confidence            99885543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.13  E-value=2.5e-10  Score=81.80  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      +.+|..++..|++++|+..|++++..+|+++.+++.+|.|+..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>KOG1130|consensus

Probab=99.12  E-value=2.3e-09  Score=99.70  Aligned_cols=291  Identities=14%  Similarity=0.068  Sum_probs=166.7

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh-h
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE-K   87 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   87 (507)
                      |.-++.+|++..-+..|+.+++.-..+-    .+|..+|..|+.+++|++|+++-..=          +.++..+++. +
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hD----------ltlar~lgdklG   93 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHD----------LTLARLLGDKLG   93 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhh----------HHHHHHhcchhc
Confidence            7888999999999999999999866543    56788999999999999999863210          1112222211 1


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      .++           ..-+||.++-..|.|++|+.+..+-+.+..      ....++|+||.+|...|+--....-=+  .
T Consensus        94 EAK-----------ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee--~  160 (639)
T KOG1130|consen   94 EAK-----------SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE--K  160 (639)
T ss_pred             ccc-----------ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh--c
Confidence            111           134788999999999999999888776643      234688999999988775211000000  0


Q ss_pred             hcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHH-------h
Q psy12000        162 AQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIK-------N  232 (507)
Q Consensus       162 ~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~-------~  232 (507)
                      ...|.....            ..+.|.+.|..-++ ....+.+.  --.++-+||..|+-.|+|++|+..-+       +
T Consensus       161 g~f~~ev~~------------al~~Av~fy~eNL~-l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e  227 (639)
T KOG1130|consen  161 GAFNAEVTS------------ALENAVKFYMENLE-LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE  227 (639)
T ss_pred             ccccHHHHH------------HHHHHHHHHHHHHH-HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence            001111100            00111111110000 00000000  01245566666666777777764322       1


Q ss_pred             cCC--CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000        233 LEP--SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY  310 (507)
Q Consensus       233 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~  310 (507)
                      +-.  ....++...|..+..+|+...+.++|+.+..+-..+++...+.   ..-+.||++|....++++||.|+.+-+.+
T Consensus       228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA---QscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA---QSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            100  0011223344455555555555555555544433333322211   11236899999999999999998764433


Q ss_pred             cC------CCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        311 YT------SDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       311 ~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                      ..      ....+.+.||.++...|..++|+.+.++.+
T Consensus       305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            21      123567789999999999999998887654

>KOG1915|consensus

Probab=99.11  E-value=2.7e-06  Score=81.18  Aligned_cols=415  Identities=11%  Similarity=0.031  Sum_probs=249.6

Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHH
Q psy12000         27 GIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCL  106 (507)
Q Consensus        27 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  106 (507)
                      +.|+..++.+.-+...|...|..-..++++..|.++++++.+.+..+.                          ..++..
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--------------------------tLWlkY  113 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--------------------------TLWLKY  113 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--------------------------hHHHHH
Confidence            345555555555566777777777777888888888877765443321                          114445


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHH
Q psy12000        107 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA  186 (507)
Q Consensus       107 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~  186 (507)
                      +..-.+.+...-|..++.+++..-|.-...++.--.+-..+|+...|.++|++-+...|+.. +++-......+.+..+.
T Consensus       114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRykeier  192 (677)
T KOG1915|consen  114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYKEIER  192 (677)
T ss_pred             HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhHHHH
Confidence            56667777788888999999999998778887766677788999999999999999888764 33322223345567778


Q ss_pred             HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000        187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA  266 (507)
Q Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  266 (507)
                      |...++...    .  ..-...+|...+..-.+.|+..-|...+........++.. ...+.............++.|.-
T Consensus       193 aR~IYerfV----~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~-~e~lfvaFA~fEe~qkE~ERar~  265 (677)
T KOG1915|consen  193 ARSIYERFV----L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE-AEILFVAFAEFEERQKEYERARF  265 (677)
T ss_pred             HHHHHHHHh----e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777652    1  1112245666777666777766665555432111111111 11122222333333445566665


Q ss_pred             HHHHhCCCcccccchhhhhHHHHHHHh-----hcCHHHHHH-----HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        267 LFQLVGSSQSECDTVPGRQCMASSFFL-----LRSFKDVIL-----YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~Ai~-----~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                      +|+-..+.-+...+.  ....+.+.+.     ..-.+++|.     -|+...+.+|.+-+.++..-.+-...|+.+.-.+
T Consensus       266 iykyAld~~pk~rae--eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire  343 (677)
T KOG1915|consen  266 IYKYALDHIPKGRAE--ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE  343 (677)
T ss_pred             HHHHHHHhcCcccHH--HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence            554322110000000  0011122111     123344442     2445556677776677777777888899999999


Q ss_pred             HHHhhcccCCCch-------hhhhhhhcccCccchhhhHHHHHHHHcCC--cHHHHHHHHHhhhcHHH--------HHHH
Q psy12000        337 MFLLVQNEGLKND-------YVYISHLTKCSPSRAKTRLSFHLSHKLGD--EKSLMEYHQKLEDSLEE--------QLCL  399 (507)
Q Consensus       337 ~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~--------~~~l  399 (507)
                      .|++++...|+..       ++|+ |+-            +.+|..+..  ........+...+.+|.        ++..
T Consensus       344 ~yErAIanvpp~~ekr~W~RYIYL-Win------------YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmy  410 (677)
T KOG1915|consen  344 TYERAIANVPPASEKRYWRRYIYL-WIN------------YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMY  410 (677)
T ss_pred             HHHHHHccCCchhHHHHHHHHHHH-HHH------------HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            9999985544321       1111 211            123333332  22333333332222221        2333


Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHH
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA  479 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~  479 (507)
                      +.....+-+...|...+-.++-..|.+.-...++ ..-.+++++|.....|++.|+..|.+-.++.--|-+--.+++-++
T Consensus       411 A~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR  489 (677)
T KOG1915|consen  411 AQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR  489 (677)
T ss_pred             HHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence            4444445688999999999999999886654443 335689999999999999999999999999888887777788888


Q ss_pred             HHHHHHHHHHhCC
Q psy12000        480 AENQLKPILVSAG  492 (507)
Q Consensus       480 ~~~~~~~~~~~~~  492 (507)
                      +++.|. |..+-|
T Consensus       490 aRaife-lAi~qp  501 (677)
T KOG1915|consen  490 ARAIFE-LAISQP  501 (677)
T ss_pred             HHHHHH-HHhcCc
Confidence            888554 333334

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=3.9e-09  Score=93.28  Aligned_cols=156  Identities=12%  Similarity=-0.030  Sum_probs=137.4

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      ...+..++..|+-+.+..+..+++..+|.+.++..-.|...+..|+|.+|+..+.++....+.+                
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d----------------  133 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD----------------  133 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC----------------
Confidence            5578899999999999999999999999999888889999999999999999999986544432                


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                                .+.+..+|.+|.+.|++++|...|.++++..|..+.+..|+|..++-.|+++.|..++......-+.+..
T Consensus       134 ----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~  203 (257)
T COG5010         134 ----------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR  203 (257)
T ss_pred             ----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence                      1236779999999999999999999999999999999999999999999999999999999888887777


Q ss_pred             HHHHHhhhhhhccChHHHHHhh
Q psy12000        170 ALNLKACNTYKLFTSRAAENQL  191 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l  191 (507)
                      ....++.+.-..|+++.|+...
T Consensus       204 v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         204 VRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHHHhhcCChHHHHhhc
Confidence            7666777777889999998643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.09  E-value=6.8e-09  Score=95.10  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=102.5

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhhccHHHHHHHHHhCCCCccccc----hHH
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDT---EFNIASCYFYLGMYLQANQILEKVPPSRAKTR----LSF   77 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~   77 (507)
                      ++...++.|..++..|+|++|++.|++++...|.++.+   .+.+|.+++++|++++|+..+++..+..|.+.    +++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45567789999999999999999999999999998754   48999999999999999999998765433321    233


Q ss_pred             HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH---H--------------HHHH
Q psy12000         78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA---L--------------NVYG  140 (507)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~--------------~~~l  140 (507)
                      ..+......+.     ..+    ..+...-.....+....+|+..|++++...|++.-   +              -+.+
T Consensus       111 ~~g~~~~~~~~-----~~~----~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i  181 (243)
T PRK10866        111 MRGLTNMALDD-----SAL----QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV  181 (243)
T ss_pred             HHHHhhhhcch-----hhh----hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221100000     000    00000001111223345788899999999987531   1              1345


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      |..|++.|.|..|+.-++.+++..|+.+
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~  209 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQ  209 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCc
Confidence            6777788888888888888777777655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.09  E-value=6.6e-10  Score=80.64  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKP  165 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p  165 (507)
                      ..+..+|.+++..|+|++|+..|+++++.+|+++.+++++|.|+..+| ++++|++.++++++.+|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            347789999999999999999999999999999999999999999999 79999999999999998

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.06  E-value=1.3e-09  Score=89.94  Aligned_cols=101  Identities=10%  Similarity=-0.083  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        394 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       394 ~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      +.-..++...+..|++++|...|+-+...+|.+...++.||.|+..+|++.+|+..|..++.++||+|.+....|..++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34456777888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCC
Q psy12000        474 LFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +++...|+.-|+..++...++
T Consensus       116 lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999888544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.04  E-value=5.8e-10  Score=79.83  Aligned_cols=63  Identities=21%  Similarity=0.218  Sum_probs=57.8

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                      ++..++..|+|++|+..|++++..+|+++.+++.+|.|+..+|++++|+..|+.+++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456778889999999999999999999999999999999999999999999999999999986

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.03  E-value=1.7e-07  Score=104.17  Aligned_cols=234  Identities=12%  Similarity=0.083  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC---cH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPT---SR  168 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~  168 (507)
                      ...+|.++...|++++|...+++++.....      ...+...+|.++...|++++|...+++++..     .+.   ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            456888999999999999999999876432      1245677899999999999999999998763     111   12


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCC--hHHH-
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSV--PQEY-  241 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~--~~~~-  241 (507)
                      ......+.+++..|+.++|...+..... ..... ......++..++.++...|++++|...+.+..   ...  .... 
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLE-VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHH-hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            2344567788888999999988877542 11111 12234556678899999999999988776541   111  0001 


Q ss_pred             HH----HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch--hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--
Q psy12000        242 IL----KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV--PGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--  313 (507)
Q Consensus       242 ~~----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--  313 (507)
                      ..    ....+...       +..+.|...+.............  .....++.++...|++++|+..+.++......  
T Consensus       653 ~~~~~~~~~~~~~~-------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g  725 (903)
T PRK04841        653 ANADKVRLIYWQMT-------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR  725 (903)
T ss_pred             hHHHHHHHHHHHHC-------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            00    00111111       23344555554332211111100  01235788999999999999999887654211  


Q ss_pred             ----CchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        314 ----DDSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       314 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                          ...++..+|.++..+|+.++|...+.+++..
T Consensus       726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                1235667899999999999999999998754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.03  E-value=2.8e-09  Score=103.80  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=88.8

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      ....|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++....+..               
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------------   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---------------   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence            34568999999999999999999999999999999999999988888888888877764432221               


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL  147 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  147 (507)
                                 +..++.+|.+++..|+|++|+..|++++..+|++..+...++.|..++
T Consensus        70 -----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         70 -----------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             -----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                       223567777888888888888888888888888877777777765554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.01  E-value=8.7e-09  Score=83.73  Aligned_cols=68  Identities=12%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      .+.+|.++...|++++|+.+|++++..+|++   +.+++.+|.++..+|++++|+..+++++...|++..+
T Consensus        42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            4567778888888888888888888887764   5678888888888888888888888888888887754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2047|consensus

Probab=99.00  E-value=4.5e-05  Score=75.69  Aligned_cols=321  Identities=11%  Similarity=0.028  Sum_probs=181.1

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc-------c-chHHHHHHhc-CChhHH
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK-------T-RLSFHLSHKL-GDEKSL   89 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~-------~-~~~~~~~~~~-~~~~~~   89 (507)
                      .|-.+-++..|++.|+.+|...+   .....+...+++++|.+.+..+.+.+..       + .++..+.... ..++..
T Consensus       151 ~~lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~  227 (835)
T KOG2047|consen  151 HGLPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV  227 (835)
T ss_pred             CCChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence            45566788888888888887643   3344566788899988888877542211       1 1222221111 011111


Q ss_pred             -----HH-HHHHHhhcHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHH-----HHHHHHHhcC---
Q psy12000         90 -----ME-YHQKLEDSLE----EQLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNV-----YGAMCYYKLD---  148 (507)
Q Consensus        90 -----~~-~~~~l~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~-----~la~~~~~~g---  148 (507)
                           .. ....+...+.    .+..||.-|...|++++|.++|++++..--   |+..++-     .=..+..+++   
T Consensus       228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~  307 (835)
T KOG2047|consen  228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELAD  307 (835)
T ss_pred             cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                 00 1111111121    156899999999999999999999997643   3322211     1111111222   


Q ss_pred             ----------CHHHHHHHHHHH------------HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC-CC
Q psy12000        149 ----------YYDVSQEQVAMY------------LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLI-DV  205 (507)
Q Consensus       149 ----------~~~~A~~~~~~~------------l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~  205 (507)
                                +.+-....|+.+            +.++|++..-+...  +-+..|+..+-+..+..+++++-+... +.
T Consensus       308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs  385 (835)
T KOG2047|consen  308 EESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGS  385 (835)
T ss_pred             hcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCC
Confidence                      223333444444            45677766544332  333456666666666666543333322 22


Q ss_pred             hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCccc--------
Q psy12000        206 IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSE--------  277 (507)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~--------  277 (507)
                      .-..|..+|..|...|+.+.|..++.+...-.-...--.+.+...-++.....+.++.|.++.+...--|..        
T Consensus       386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~  465 (835)
T KOG2047|consen  386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN  465 (835)
T ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence            335788899999999999999999987643222112223445555555444456677777766532111110        


Q ss_pred             ccchh--------hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        278 CDTVP--------GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       278 ~~~~~--------~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      ..+..        .|..++......|-++.--..|+++..+---.|.+..|.|..+..-.-+++|.+.|++-+..
T Consensus       466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence            01111        12334555555666666666777776655456677778888888888888888888886543

>KOG3060|consensus

Probab=99.00  E-value=8.2e-08  Score=84.24  Aligned_cols=168  Identities=15%  Similarity=0.086  Sum_probs=131.8

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCcc
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPS  362 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  362 (507)
                      .+..+..+....|+.+-|-.+++......|.+..+.-..|..+...|.+++|+++|+.+++.+|.+...+..-++     
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA-----  128 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA-----  128 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH-----
Confidence            344566677788999999999999887779888887778999999999999999999999988777665533211     


Q ss_pred             chhhhHHHHHHHHcCCcHHHH----HHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcc
Q psy12000        363 RAKTRLSFHLSHKLGDEKSLM----EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY  438 (507)
Q Consensus       363 ~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~  438 (507)
                               +....|...+++    +++..+-...+.+..++.+++..|.|++|.=++++++-..|.++..+..+|.+++
T Consensus       129 ---------ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  129 ---------ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             ---------HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                     122233333332    2333333345667778899999999999999999999999999999999999999


Q ss_pred             ccc---cchhHHHHHHHHHhcCCCchhhh
Q psy12000        439 KLD---YYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       439 ~~g---~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      -+|   +..-|.+.|.++++++|.+.-++
T Consensus       200 t~gg~eN~~~arkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  200 TQGGAENLELARKYYERALKLNPKNLRAL  228 (289)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence            887   67788999999999999766553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.96  E-value=2e-08  Score=96.11  Aligned_cols=149  Identities=15%  Similarity=0.040  Sum_probs=112.0

Q ss_pred             CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcH
Q psy12000         37 NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY  116 (507)
Q Consensus        37 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~  116 (507)
                      |....++|..+..++..|++++|+..+.......+.+..+                          ....+.++...++.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~--------------------------~~~~~~i~~~~nk~  356 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY--------------------------LELAGDILLEANKA  356 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH--------------------------HHHHHHHHHHcCCh
Confidence            6666778888888888888888888877665444443111                          22456788888888


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000        117 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV  196 (507)
Q Consensus       117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~  196 (507)
                      .+|++.+++++..+|+.+....++|.++++.|++.+|+..++..+..+|+++..|.++|..+-.+|+..++......   
T Consensus       357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---  433 (484)
T COG4783         357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE---  433 (484)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH---
Confidence            88888888888888888888888888888888888888888888888888888888888888788887777665543   


Q ss_pred             hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        197 SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                                         .|.-.|++++|+..+...
T Consensus       434 -------------------~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         434 -------------------GYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             -------------------HHHhCCCHHHHHHHHHHH
Confidence                               245578888887776543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.96  E-value=2.1e-09  Score=77.70  Aligned_cols=66  Identities=27%  Similarity=0.367  Sum_probs=60.0

Q ss_pred             HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      ...|++++|+..|++++..+|++.++++.+|.|+++.|++++|.+.+++++..+|+++....+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            578999999999999999999999999999999999999999999999999999998776665543

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=5.4e-08  Score=93.27  Aligned_cols=120  Identities=17%  Similarity=0.017  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      +..+..++..|.+++|+..++.++...|+|+..+-..+.+++..|+.++|.+.+++++..+|+.+.....+|..+++.|+
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence            34455555666666666666666666666666666666666666666666666666666666665555555666666666


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000        184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD  228 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  228 (507)
                      .++|+..+....     ...|..|..|..|+..|-.+|+-.+|..
T Consensus       390 ~~eai~~L~~~~-----~~~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         390 PQEAIRILNRYL-----FNDPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             hHHHHHHHHHHh-----hcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence            666665555442     2344455566666666666666555543

>KOG3060|consensus

Probab=98.95  E-value=1.6e-07  Score=82.43  Aligned_cols=145  Identities=14%  Similarity=-0.041  Sum_probs=111.0

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      +..+....|+.+-|..+++++....|.+..+--..|..+-..|++++|+++++...+.++.+.+..              
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~--------------  123 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR--------------  123 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH--------------
Confidence            466677889999999999999999999999999999999999999999999998876555442110              


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                                  -..-.+.-.+|+--+||+-..+.++..|.+.++|..++.+|+..|+|++|.-.+++++-..|.++..+
T Consensus       124 ------------KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f  191 (289)
T KOG3060|consen  124 ------------KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF  191 (289)
T ss_pred             ------------HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHH
Confidence                        11122444567777888888888888888888888888888888888888888888888888877766


Q ss_pred             HHHhhhhhhcc
Q psy12000        172 NLKACNTYKLF  182 (507)
Q Consensus       172 ~~~a~~~~~~~  182 (507)
                      ..+|.+.|-+|
T Consensus       192 ~rlae~~Yt~g  202 (289)
T KOG3060|consen  192 QRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHHHh
Confidence            66666665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.94  E-value=2.2e-09  Score=81.25  Aligned_cols=80  Identities=24%  Similarity=0.230  Sum_probs=60.9

Q ss_pred             HhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000        112 LRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  189 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~  189 (507)
                      .+|+|++|+.+|++++...|.  +..+++.+|.|++++|+|++|++.+++ .+.+|.+.....++|.+++.+|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  566777899999999999999999998 77777766555555666666666666655


Q ss_pred             hhH
Q psy12000        190 QLK  192 (507)
Q Consensus       190 ~l~  192 (507)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>KOG0553|consensus

Probab=98.93  E-value=1e-08  Score=92.33  Aligned_cols=92  Identities=18%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +-.-|.-+.+.++|.+|+..|.++|..+|.++-.|-+.|.+|.++|+++.|++-+++++.+||.+..+|..++..++.+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44678889999999999999999999999999999999999999999999999999999999988877766666666666


Q ss_pred             ChHHHHHhhHHH
Q psy12000        183 TSRAAENQLKPI  194 (507)
Q Consensus       183 ~~~~A~~~l~~~  194 (507)
                      ++..|++.|++.
T Consensus       164 k~~~A~~aykKa  175 (304)
T KOG0553|consen  164 KYEEAIEAYKKA  175 (304)
T ss_pred             cHHHHHHHHHhh
Confidence            666666665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.93  E-value=1.7e-08  Score=98.26  Aligned_cols=109  Identities=16%  Similarity=0.038  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +...|...+..|+|++|+..|++++..+|++..+++++|.++..+|++++|+..+++++..+|+++.++..+|.+++.+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIY  216 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  216 (507)
                      ++++|+..++.+++     ..|..+.+...++.+
T Consensus        85 ~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGAS-----LAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHH-----hCCCCHHHHHHHHHH
Confidence            88888888877642     334444444444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.91  E-value=3.1e-08  Score=83.56  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      .-....+..++...+...++.+.+.+|++   ..+.+.+|.+++..|++++|...|+.+....+... +.          
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l~----------   84 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-LK----------   84 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-HH----------
Confidence            33444556788888888888888888887   35677788888888888888888887754332110 00          


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                                  +...+.+|.++..+|++++|+..++. +...+..+.+...+|.++...|++++|+..|+++
T Consensus        85 ------------~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   85 ------------PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence                        11156788888888888888888866 3344556667778888888888888888888765

>KOG1128|consensus

Probab=98.90  E-value=7.4e-08  Score=96.22  Aligned_cols=153  Identities=14%  Similarity=0.062  Sum_probs=122.2

Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  251 (507)
                      ..++.+++..|-.+.|...++++             +.|-..+.+|...|+.++|.....+...++|..     ..|..+
T Consensus       402 ~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~-----~lyc~L  463 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP-----RLYCLL  463 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc-----hhHHHh
Confidence            45677777888888888888765             567788999999999999988776654443332     356678


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCH
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQY  331 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  331 (507)
                      |+.......+++|.++++.+..        .|...+|......++|+++.+.++...+.+|-....+|.+|.+..+.+++
T Consensus       464 GDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence            8888888899999999875431        12245666677789999999999999999999888999999999999999


Q ss_pred             HHHHHHHHhhcccCCCchh
Q psy12000        332 KEAEEMFLLVQNEGLKNDY  350 (507)
Q Consensus       332 ~~A~~~~~~~~~~~~~~~~  350 (507)
                      ..|...|.+++..+|.+..
T Consensus       536 q~av~aF~rcvtL~Pd~~e  554 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPDNAE  554 (777)
T ss_pred             HHHHHHHHHHhhcCCCchh
Confidence            9999999999877765543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.89  E-value=5.2e-09  Score=75.88  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc-cchhHHHHHHHHHhcCC
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKP  458 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~~l~~~P  458 (507)
                      ..+|.+++..|+|++|+..|+++++.+|+++.+++++|.+|.++| ++++|++.++++++++|
T Consensus         7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            446778888899999999999999999999999999999999999 79999999999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.89  E-value=1.5e-08  Score=82.28  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=88.2

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhh
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACN  470 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~  470 (507)
                      ..++..+...|++++|++.|++++..+|++   ..+.+.+|.++.+.|++++|+..++.++..+|++   +.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            445566777899999999999999988876   4678889999999999999999999999999996   5678889999


Q ss_pred             hhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        471 TYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      +..+++...+...++.+++.+|.+.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCCh
Confidence            9999999999999999999999873

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.87  E-value=2.9e-09  Score=76.96  Aligned_cols=66  Identities=27%  Similarity=0.343  Sum_probs=60.9

Q ss_pred             hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        405 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       405 ~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ..|+|++|+..|++++..+|++..+.+.+|.||.+.|++++|...+++++..+|+++....+++.+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            458999999999999999999999999999999999999999999999999999999988877653

...

>KOG3081|consensus

Probab=98.84  E-value=1.5e-06  Score=77.08  Aligned_cols=250  Identities=16%  Similarity=0.158  Sum_probs=143.8

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+.-.+-+|..|+|..++..-++.-... ...+.-+++.++|..+|++..-+.........+...  ...++.....++
T Consensus        10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqA--vr~~a~~~~~e~   86 (299)
T KOG3081|consen   10 DELFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQA--VRLLAEYLELES   86 (299)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHH--HHHHHHHhhCcc
Confidence            34445667888999999998877664433 666788899999999999987776655443222221  111111111121


Q ss_pred             HHHHHH----HHHhh-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         88 SLMEYH----QKLED-----SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        88 ~~~~~~----~~l~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      ..+...    +.+..     +...+..-|.++.+.|++++|......     .++.++.-.--.|+.++.+++-|...++
T Consensus        87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk  161 (299)
T KOG3081|consen   87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELK  161 (299)
T ss_pred             hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111    11111     011244445566666666666665444     2334444444456666666666666666


Q ss_pred             HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000        159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP  238 (507)
Q Consensus       159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~  238 (507)
                      ++.+.+.+....-                                  .+++|.+++   ...+++.+|+-+++++..+.+
T Consensus       162 ~mq~ided~tLtQ----------------------------------LA~awv~la---~ggek~qdAfyifeE~s~k~~  204 (299)
T KOG3081|consen  162 KMQQIDEDATLTQ----------------------------------LAQAWVKLA---TGGEKIQDAFYIFEELSEKTP  204 (299)
T ss_pred             HHHccchHHHHHH----------------------------------HHHHHHHHh---ccchhhhhHHHHHHHHhcccC
Confidence            5554443332100                                  011222211   112345555555555433222


Q ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000        239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFN  318 (507)
Q Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~  318 (507)
                      ..+                                     .   ....++.|.+.+++|++|...++.++..+++++.++
T Consensus       205 ~T~-------------------------------------~---llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  205 PTP-------------------------------------L---LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             CCh-------------------------------------H---HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            111                                     1   112468899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        319 FNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       319 ~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                      .|+-.+-...|+.+++.+-+-.-+
T Consensus       245 ~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  245 ANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHH
Confidence            999999999999888877665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.84  E-value=1.3e-07  Score=79.75  Aligned_cols=119  Identities=18%  Similarity=0.006  Sum_probs=79.3

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHhhhhhh
Q psy12000        107 ASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYK  180 (507)
Q Consensus       107 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a~~~~~  180 (507)
                      +......++.+.+...+++++..+|++   ..+.+.+|.+++..|++++|...|+.++...|+...   +...++.+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~   97 (145)
T PF09976_consen   18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ   97 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            333446888899988899999998887   467778899999999999999999999887766532   34444555555


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~  231 (507)
                      .|++++|...++..      ...+..+.++..+|.+|.+.|++++|+..++
T Consensus        98 ~~~~d~Al~~L~~~------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   98 QGQYDEALATLQQI------PDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             cCCHHHHHHHHHhc------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555555554321      1122334455555666666666666655554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.84  E-value=7.4e-08  Score=83.90  Aligned_cols=87  Identities=18%  Similarity=0.014  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      ++.+|..+...|++++|+.+|++++...|+   ...+++.+|.++..+|++++|+..+++++..+|++..++..++.++.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            788999999999999999999999988765   35789999999999999999999999999999999988888888887


Q ss_pred             hccChHHHHH
Q psy12000        180 KLFTSRAAEN  189 (507)
Q Consensus       180 ~~~~~~~A~~  189 (507)
                      ..|+...+..
T Consensus       118 ~~g~~~~a~~  127 (172)
T PRK02603        118 KRGEKAEEAG  127 (172)
T ss_pred             HcCChHhHhh
Confidence            7776655543

>KOG3081|consensus

Probab=98.84  E-value=5.7e-07  Score=79.68  Aligned_cols=250  Identities=13%  Similarity=0.050  Sum_probs=145.4

Q ss_pred             HhhccHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc
Q psy12000        218 LKQEEHQEAFDLIKNLEP--SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR  295 (507)
Q Consensus       218 ~~~~~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  295 (507)
                      +=.|+|.+++....+...  ..+.-.......+..+|+.......++.+          .  .....+...++.....-+
T Consensus        19 fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~--~~~lqAvr~~a~~~~~e~   86 (299)
T KOG3081|consen   19 FYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEG----------K--ATPLQAVRLLAEYLELES   86 (299)
T ss_pred             HHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccc----------c--CChHHHHHHHHHHhhCcc
Confidence            336777777776665432  22222333455566666544322221110          0  111222223444444444


Q ss_pred             CHHHHHH-HHHHhhhhc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000        296 SFKDVIL-YLSSIKSYY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS  373 (507)
Q Consensus       296 ~~~~Ai~-~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  373 (507)
                      +-++-+. ..+.+.... ..+..+...-|.++.+.|++++|+....+....+.....      ..++.+..+.+.|....
T Consensus        87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~------VqI~lk~~r~d~A~~~l  160 (299)
T KOG3081|consen   87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN------VQILLKMHRFDLAEKEL  160 (299)
T ss_pred             hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            4444443 334333222 223345555678899999999999988874333211111      22344555666666555


Q ss_pred             HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH--hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHH
Q psy12000        374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  451 (507)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~  451 (507)
                      .++.+.++...+ ..        ++-+|+-+..  +++.+|.=+|+++-++.|-.+.+....|.|...+|++++|...++
T Consensus       161 k~mq~ided~tL-tQ--------LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~  231 (299)
T KOG3081|consen  161 KKMQQIDEDATL-TQ--------LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE  231 (299)
T ss_pred             HHHHccchHHHH-HH--------HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence            555544332111 11        2223444433  479999999999998887778888888999999999999999999


Q ss_pred             HHHhcCCCchhhh-hHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        452 MYLAQKPTSRIAL-NLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       452 ~~l~~~P~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .+|..+|++|+++ |+..+.+..=++.+.-++-+.-+....|+|
T Consensus       232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            9999999999875 445555554334455556667777778877

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.82  E-value=1.9e-08  Score=73.77  Aligned_cols=70  Identities=27%  Similarity=0.361  Sum_probs=65.0

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      |..+|..++++++|++++++++..+|+++.++...|.|+..+|++++|++.|+++++..|+++.+..+.+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999998765544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.79  E-value=6.4e-08  Score=74.44  Aligned_cols=91  Identities=24%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+|.++...|++++|+..+++++...|.+..+++.+|.++...|++++|++.+++++...|.+..++..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999998999999999999999999999999999998887765555555555555


Q ss_pred             ChHHHHHhhHH
Q psy12000        183 TSRAAENQLKP  193 (507)
Q Consensus       183 ~~~~A~~~l~~  193 (507)
                      +++.|...+..
T Consensus        83 ~~~~a~~~~~~   93 (100)
T cd00189          83 KYEEALEAYEK   93 (100)
T ss_pred             hHHHHHHHHHH
Confidence            55555544443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.78  E-value=9e-08  Score=83.07  Aligned_cols=130  Identities=14%  Similarity=-0.020  Sum_probs=99.4

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPP--EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH   93 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (507)
                      +|....|..+...+...++..+..  ...++.+|.++..+|++++|+..++++....+...                   
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------------------   69 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------------------   69 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------
Confidence            445566778888888887766665  46789999999999999999999998753211100                   


Q ss_pred             HHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-------hcCCHH-------HHHHHHHH
Q psy12000         94 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY-------KLDYYD-------VSQEQVAM  159 (507)
Q Consensus        94 ~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~  159 (507)
                          ..+..+..+|.++...|++++|+..|++++..+|.....+.++|.++.       .+|+++       +|+..+++
T Consensus        70 ----~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033         70 ----DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             ----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence                001126789999999999999999999999999999998888888888       777877       55555556


Q ss_pred             HHhcCCCcH
Q psy12000        160 YLAQKPTSR  168 (507)
Q Consensus       160 ~l~~~p~~~  168 (507)
                      ++..+|.+.
T Consensus       146 a~~~~p~~~  154 (168)
T CHL00033        146 AIALAPGNY  154 (168)
T ss_pred             HHHhCcccH
Confidence            667777654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.5e-07  Score=85.63  Aligned_cols=123  Identities=14%  Similarity=0.047  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000         21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  100 (507)
Q Consensus        21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  100 (507)
                      +.+.-+.-++.-+..+|++.+-|..+|.+|+.+|++..|...|.++....+.+                          +
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--------------------------~  190 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--------------------------P  190 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--------------------------H
Confidence            35667778888889999999999999999999999999999998876533332                          2


Q ss_pred             HHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        101 EEQLCLASIHFLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       101 ~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      +-+..+|.+++.+   ..-.++...|++++..+|.++.+.+.||..++..|+|.+|+..++.+++..|.+..
T Consensus       191 ~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         191 EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            2234455554443   34568899999999999999999999999999999999999999999988776654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=7.2e-08  Score=88.96  Aligned_cols=68  Identities=6%  Similarity=0.018  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      ++.+|.+|+..|++++|+..|++++..+|+   .+++++.+|.++..+|++++|...|+++++..|++..+
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            456667777777777777777777776665   45677777777777777777777777777777777654

>KOG2047|consensus

Probab=98.77  E-value=0.00029  Score=70.13  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=57.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHH-HhhhhcCCC-----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc----hhhhhhh
Q psy12000        286 CMASSFFLLRSFKDVILYLS-SIKSYYTSD-----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN----DYVYISH  355 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~-~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~  355 (507)
                      |+-.+-+..|+..+-+..|. .++..+|.-     ...+..+|..|...|+.+.|...|+++...++..    ..+|..|
T Consensus       352 W~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w  431 (835)
T KOG2047|consen  352 WHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW  431 (835)
T ss_pred             HHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence            45566677888888888555 455666643     2445668999999999999999999987654432    2344443


Q ss_pred             hcccCccchhhhHHHHHHH
Q psy12000        356 LTKCSPSRAKTRLSFHLSH  374 (507)
Q Consensus       356 l~~~~~~~~~~~~A~~~~~  374 (507)
                       |..-.+..+++.|+.+..
T Consensus       432 -aemElrh~~~~~Al~lm~  449 (835)
T KOG2047|consen  432 -AEMELRHENFEAALKLMR  449 (835)
T ss_pred             -HHHHHhhhhHHHHHHHHH
Confidence             233334555666665444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.77  E-value=1.5e-08  Score=74.31  Aligned_cols=69  Identities=26%  Similarity=0.344  Sum_probs=64.3

Q ss_pred             HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000        401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  469 (507)
Q Consensus       401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~  469 (507)
                      .++...++|++|+.++++++..+|+++.++...|.+++++|++++|+..++.+++..|+++.+..+++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            467778999999999999999999999999999999999999999999999999999999998776654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.76  E-value=5.6e-08  Score=74.81  Aligned_cols=95  Identities=23%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChH
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR  478 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~  478 (507)
                      ++.+++..|++++|+..++++++..|+++.+...+|.++...|++++|++.++.+++..|.++.++..++.+++..++.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            45577778999999999999999999998889999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHhCCC
Q psy12000        479 AAENQLKPILVSAGP  493 (507)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (507)
                      .+...++.+++..|.
T Consensus        86 ~a~~~~~~~~~~~~~  100 (100)
T cd00189          86 EALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999888773

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.74  E-value=1.1e-07  Score=77.28  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhcCCchh---hhHHHHHhhccccccchhHHHHHHHHHhcCCCchh---hhhHHHhhhhh
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYK  473 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~---~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~~~~~~~~  473 (507)
                      |...+..|+|++|++.|+.+....|-.+   .+...+|.+|++.|++++|+..++.++++||+|+.   ++.++|..+|.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            3455567999999999999999888663   57889999999999999999999999999999986   47789999998


Q ss_pred             cCC---------------hHHHHHHHHHHHHhCCCCc
Q psy12000        474 LFT---------------SRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       474 ~~~---------------~~~~~~~~~~~~~~~~~~~  495 (507)
                      +..               -+.|.+.|+.+++.+|..+
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            765               7788889999999999874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.73  E-value=2.4e-07  Score=80.34  Aligned_cols=77  Identities=16%  Similarity=-0.078  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      ++.+|.++..+|++++|+..|++++...|+   .+.++.++|.++...|++++|+..+++++..+|....++..++.++.
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            678999999999999999999999988776   34589999999999999999999999999999998877666655544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.73  E-value=4.5e-07  Score=85.69  Aligned_cols=175  Identities=14%  Similarity=0.090  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +..-|..|...|++++|.+.|.++....-      .....+...+.++.+. ++++|++.+++++.              
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------  102 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------  102 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------
Confidence            44567777778888888888887755431      1223444455555444 66677666666542              


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-ccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT  255 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~  255 (507)
                      ++...|++..|-                   ....++|.+|... |++++|++.+.+                       
T Consensus       103 ~y~~~G~~~~aA-------------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~-----------------------  140 (282)
T PF14938_consen  103 IYREAGRFSQAA-------------------KCLKELAEIYEEQLGDYEKAIEYYQK-----------------------  140 (282)
T ss_dssp             HHHHCT-HHHHH-------------------HHHHHHHHHHCCTT--HHHHHHHHHH-----------------------
T ss_pred             HHHhcCcHHHHH-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence            233444444443                   2344566666666 677777666643                       


Q ss_pred             CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-------chHHHHHHHHHHhh
Q psy12000        256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-------DSFNFNFAQAKCAL  328 (507)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-------~~~~~~lg~~~~~~  328 (507)
                              |..+|..-...   .........+|.++...|+|++|++.|+++....-+.       ...++..+.|+...
T Consensus       141 --------A~~~y~~e~~~---~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  141 --------AAELYEQEGSP---HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             --------HHHHHHHTT-H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHCCCh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence                    33333321100   0001122357899999999999999999876543221       13445678899999


Q ss_pred             CCHHHHHHHHHhhcccC
Q psy12000        329 GQYKEAEEMFLLVQNEG  345 (507)
Q Consensus       329 g~~~~A~~~~~~~~~~~  345 (507)
                      |++-.|...+++....+
T Consensus       210 ~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  210 GDYVAARKALERYCSQD  226 (282)
T ss_dssp             T-HHHHHHHHHHHGTTS
T ss_pred             CCHHHHHHHHHHHHhhC
Confidence            99999999999986554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.71  E-value=1e-07  Score=82.96  Aligned_cols=108  Identities=14%  Similarity=0.013  Sum_probs=87.3

Q ss_pred             CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHH
Q psy12000         38 PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQ  117 (507)
Q Consensus        38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~  117 (507)
                      ....+++.+|.++...|++++|+.+++++....+...                       .....+..+|.++...|+++
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------------~~~~~~~~la~~~~~~g~~~   89 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-----------------------DRSYILYNMGIIYASNGEHD   89 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----------------------hHHHHHHHHHHHHHHcCCHH
Confidence            4556789999999999999999999988753211100                       00112678999999999999


Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCcH
Q psy12000        118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDY--------------YDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~p~~~  168 (507)
                      +|+.+|++++...|++..++..+|.++...|+              +++|++.+++++..+|++.
T Consensus        90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999999999999999999999999888              5777888888888888764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.71  E-value=6.6e-08  Score=89.22  Aligned_cols=90  Identities=12%  Similarity=0.016  Sum_probs=82.6

Q ss_pred             HhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhhhhhcCChHH
Q psy12000        406 RCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACNTYKLFTSRA  479 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~~~~~~~~~~  479 (507)
                      .|+|++|+..|++++..+|++   +.+++++|.+|+..|++++|+..|+.+++.+|++   +.++..+|.+++.+++.+.
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            489999999999999999998   4799999999999999999999999999999996   4567778999999999999


Q ss_pred             HHHHHHHHHHhCCCCc
Q psy12000        480 AENQLKPILVSAGPRV  495 (507)
Q Consensus       480 ~~~~~~~~~~~~~~~~  495 (507)
                      |.+.|+.+++.+|...
T Consensus       236 A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        236 AKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHHCcCCH
Confidence            9999999999999864

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.71  E-value=1.3e-06  Score=77.84  Aligned_cols=186  Identities=17%  Similarity=0.195  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKA  175 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~a  175 (507)
                      .++.-|......|++++|++.|+.+...+|.   ...+...++.++++.+++++|+..+++++..+|+++.   ++++++
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            3788999999999999999999999999875   4578899999999999999999999999999999886   466666


Q ss_pred             hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000        176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT  255 (507)
Q Consensus       176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~  255 (507)
                      .+++..-+                  ....             .+.-..+|+..++++....|.+.+..           
T Consensus       116 Ls~~~~i~------------------~~~r-------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~-----------  153 (254)
T COG4105         116 LSYFFQID------------------DVTR-------------DQSAARAAFAAFKELVQRYPNSRYAP-----------  153 (254)
T ss_pred             HHHhccCC------------------cccc-------------CHHHHHHHHHHHHHHHHHCCCCcchh-----------
Confidence            65432100                  0000             11112234444444433333221100           


Q ss_pred             CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHH
Q psy12000        256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYK  332 (507)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~  332 (507)
                      .+...+..+...+   .         .-.+.+|..|.+.|.|..|+..++.+.+..|+.+   .++..+..+|..+|-.+
T Consensus       154 dA~~~i~~~~d~L---A---------~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~  221 (254)
T COG4105         154 DAKARIVKLNDAL---A---------GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTD  221 (254)
T ss_pred             hHHHHHHHHHHHH---H---------HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence            0000001110000   0         0013578999999999999999999988777653   55677889999999999


Q ss_pred             HHHHHHHhh
Q psy12000        333 EAEEMFLLV  341 (507)
Q Consensus       333 ~A~~~~~~~  341 (507)
                      +|...-.-+
T Consensus       222 ~a~~~~~vl  230 (254)
T COG4105         222 EAKKTAKVL  230 (254)
T ss_pred             HHHHHHHHH
Confidence            998765533

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.68  E-value=1.4e-06  Score=82.35  Aligned_cols=204  Identities=16%  Similarity=0.042  Sum_probs=109.9

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCC--CC----hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPN--PP----EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .|.+|-..|++++|...|.++.+..-  .+    ...+...+.++... ++++|+.+++++..          +....|+
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~----------~y~~~G~  109 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE----------IYREAGR  109 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH----------HHHHCT-
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH----------HHHhcCc
Confidence            56667777777777777776654321  11    12344444444333 66666666655421          1111222


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      ...+.          ..+..+|.+|... |++++|+++|++++.....      ....+..+|.++..+|+|++|++.|+
T Consensus       110 ~~~aA----------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e  179 (282)
T PF14938_consen  110 FSQAA----------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE  179 (282)
T ss_dssp             HHHHH----------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            11111          1156789999998 9999999999999987531      23567789999999999999999999


Q ss_pred             HHHhcCCCcH------HHH-HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHh--HHHHHHHHHh--hccHHHHH
Q psy12000        159 MYLAQKPTSR------IAL-NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPES--RLNLVIYHLK--QEEHQEAF  227 (507)
Q Consensus       159 ~~l~~~p~~~------~a~-~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~~~~~~A~  227 (507)
                      ++....-++.      ..+ .....+++..|+.-.|...++++.. ..+.... +.+.  ...|...+-.  ...+++|+
T Consensus       180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av  257 (282)
T PF14938_consen  180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-QDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAV  257 (282)
T ss_dssp             HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-TSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9876432221      112 2233455566777777777766531 1111111 1222  2233333322  34566666


Q ss_pred             HHHHhcCCCCh
Q psy12000        228 DLIKNLEPSVP  238 (507)
Q Consensus       228 ~~l~~~~~~~~  238 (507)
                      ..+..+.+.++
T Consensus       258 ~~~d~~~~ld~  268 (282)
T PF14938_consen  258 AEYDSISRLDN  268 (282)
T ss_dssp             HHHTTSS---H
T ss_pred             HHHcccCccHH
Confidence            66666655544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.67  E-value=6.3e-07  Score=91.00  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=101.8

Q ss_pred             hHHHHHHHhhcC---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHH--------HHHHHHHhCCCCccccchHHH
Q psy12000         10 AWLGYCHFHLGQ---YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYL--------QANQILEKVPPSRAKTRLSFH   78 (507)
Q Consensus        10 ~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------eA~~~~~~~~~~~~~~~~~~~   78 (507)
                      +..|..+...++   ...|+.+|+++++.+|+.+.++-.++.++.....+.        .+...+.++...+.       
T Consensus       343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~-------  415 (517)
T PRK10153        343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE-------  415 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc-------
Confidence            335776765544   889999999999999999988888888775543322        12222221111000       


Q ss_pred             HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                                       ....+..+..+|.++...|++++|...+++++..+|+ ..++..+|.++...|++++|++.++
T Consensus       416 -----------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        416 -----------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             -----------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                             0011233667788888899999999999999999995 7899999999999999999999999


Q ss_pred             HHHhcCCCcHHH
Q psy12000        159 MYLAQKPTSRIA  170 (507)
Q Consensus       159 ~~l~~~p~~~~a  170 (507)
                      +++.++|.+++.
T Consensus       478 ~A~~L~P~~pt~  489 (517)
T PRK10153        478 TAFNLRPGENTL  489 (517)
T ss_pred             HHHhcCCCCchH
Confidence            999999999863

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.67  E-value=2.8e-07  Score=82.78  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .|..|..++..|+|..|...|...++..|++.   +++|.+|.+++.+|++++|...|..+.+..++.            
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------  211 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------  211 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence            56677777777777777777777777777653   566667777766666666666665543322211            


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL  136 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  136 (507)
                                 .+.|+.++.+|.+....|+.++|...|+++++..|+...+
T Consensus       212 -----------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         212 -----------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             -----------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence                       0123345556666666666666666666666666665544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.65  E-value=1.6e-06  Score=77.32  Aligned_cols=184  Identities=16%  Similarity=0.137  Sum_probs=125.8

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC--ch--hhhhhhhc
Q psy12000        285 QCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK--ND--YVYISHLT  357 (507)
Q Consensus       285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~l~  357 (507)
                      +.-|......|+|++|+..|+.+.+..|..   +.+.+.++.++++.+++++|+...++-+...|.  +.  ..|+..|.
T Consensus        38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            345778889999999999999999887765   467788999999999999999999997754432  21  11211111


Q ss_pred             ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh---hh-----
Q psy12000        358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---AL-----  429 (507)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~---~~-----  429 (507)
                        +            +..+.+..             .|          ...-.+|+.-|+.++...|++.   ++     
T Consensus       118 --~------------~~~i~~~~-------------rD----------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~  160 (254)
T COG4105         118 --Y------------FFQIDDVT-------------RD----------QSAARAAFAAFKELVQRYPNSRYAPDAKARIV  160 (254)
T ss_pred             --H------------hccCCccc-------------cC----------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence              0            00010000             00          1223566777777777777652   11     


Q ss_pred             ---------HHHHHhhccccccchhHHHHHHHHHhcCCCchh---hhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCccC
Q psy12000        430 ---------NVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLKACNTYKLFTSRAAENQLKPILVSAGPRVRF  497 (507)
Q Consensus       430 ---------~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (507)
                               ...+|..|.+.|.+-.|+..++.+++.+|+.+.   ++..+...++.++..+.|.. ..+++...+|++.+
T Consensus       161 ~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~N~p~s~~  239 (254)
T COG4105         161 KLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGANYPDSQW  239 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHhcCCCCcc
Confidence                     123577888888888888888888888888654   56677777788777666666 68888888888877


Q ss_pred             CCCcccccC
Q psy12000        498 PPGADFILN  506 (507)
Q Consensus       498 ~~~~~~~~~  506 (507)
                      +.++|=+++
T Consensus       240 ~~~~~~~~~  248 (254)
T COG4105         240 YKDAYRLLQ  248 (254)
T ss_pred             hhhhhhccc
Confidence            777765554

>KOG2053|consensus

Probab=98.65  E-value=0.00066  Score=70.27  Aligned_cols=184  Identities=18%  Similarity=0.130  Sum_probs=125.0

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      ....+++.+|..-..++++..|+.+-+....|.++.++|+.++|..+++..........                     
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~---------------------   77 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD---------------------   77 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch---------------------
Confidence            45678999999999999999999999999999999999999999977765432221110                     


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-HHHH
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA-LNLK  174 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~~  174 (507)
                           ..+-.+-.+|..+|++++|..+|++++..+|. .+..+.+=++|.+-+.|.+-.+.--++-+..|..+.. |...
T Consensus        78 -----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~  151 (932)
T KOG2053|consen   78 -----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI  151 (932)
T ss_pred             -----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence                 00234567899999999999999999999999 7777788889999888877666555555677877652 2333


Q ss_pred             hhhhhhccChHH---------HHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000        175 ACNTYKLFTSRA---------AENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       175 a~~~~~~~~~~~---------A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~  231 (507)
                      +.+.......+.         |....++..    ..-.+.  ..++.+ .-.++..+|++++|.+.+.
T Consensus       152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l----~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~  214 (932)
T KOG2053|consen  152 SLILQSIFSENELLDPILLALAEKMVQKLL----EKKGKIESEAEIIL-YLLILELQGKYQEALEFLA  214 (932)
T ss_pred             HHHHHhccCCcccccchhHHHHHHHHHHHh----ccCCccchHHHHHH-HHHHHHhcccHHHHHHHHH
Confidence            333222222222         223333322    111111  122222 2234566899999998773

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.5e-07  Score=80.44  Aligned_cols=104  Identities=16%  Similarity=0.062  Sum_probs=81.5

Q ss_pred             HHHHHhhcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCC
Q psy12000         92 YHQKLEDSLE---EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD---YYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        92 ~~~~l~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p  165 (507)
                      ....|..+|+   .+..||.+|..+|+++.|...|.+++++.|+++++...+|.+++...   ...++...|++++..||
T Consensus       145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3445555554   48889999999999999999999999999999988888888766433   35678888888899999


Q ss_pred             CcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000        166 TSRIALNLKACNTYKLFTSRAAENQLKPIL  195 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~  195 (507)
                      +++.+..++|..++..|++.+|...++.+.
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL  254 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLL  254 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            888888888888777777777777776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=1.9e-06  Score=73.96  Aligned_cols=92  Identities=14%  Similarity=0.029  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++..|..|-..|-.+-|.--|.+++.++|+.+++...+|.-+...|+|+.|.+.|+..++.||.+.-+....|...+..|
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence            67789999999999999999999999999999999999999999999999999999999999999999888888888999


Q ss_pred             ChHHHHHhhHHH
Q psy12000        183 TSRAAENQLKPI  194 (507)
Q Consensus       183 ~~~~A~~~l~~~  194 (507)
                      ++.-|...+.+.
T Consensus       148 R~~LAq~d~~~f  159 (297)
T COG4785         148 RYKLAQDDLLAF  159 (297)
T ss_pred             chHhhHHHHHHH
Confidence            999998877754

>PRK15331 chaperone protein SicA; Provisional

Probab=98.63  E-value=1.9e-07  Score=77.56  Aligned_cols=108  Identities=15%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHh
Q psy12000        310 YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKL  389 (507)
Q Consensus       310 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  389 (507)
                      ++++.-...|..|.-++.+|++++|...|.-..-.++.+...+                                     
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~-------------------------------------   74 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT-------------------------------------   74 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH-------------------------------------
Confidence            3333334567789999999999999999987543333222211                                     


Q ss_pred             hhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        390 EDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       390 ~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                             ..||.++...++|++|++.|..+....+++|...++.|.||..+|+.++|+.+|+.+++ .|.++.
T Consensus        75 -------~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331         75 -------MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence                   33556777779999999999999999999999999999999999999999999999998 566554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.62  E-value=4.6e-08  Score=73.93  Aligned_cols=80  Identities=24%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             HhhHHHHHHHHHHHhhcCCc--hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000        406 RCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ  483 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~--~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~  483 (507)
                      +|+|++|+.+|++++...|.  +....+.+|.||+++|++++|+..+++ ++.+|.++....++|..++.++..+.|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            47899999999999998885  455667789999999999999999999 889999988888999999999999988887


Q ss_pred             HHH
Q psy12000        484 LKP  486 (507)
Q Consensus       484 ~~~  486 (507)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            664

>KOG0543|consensus

Probab=98.60  E-value=8.3e-07  Score=83.66  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHH
Q psy12000         43 EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  122 (507)
Q Consensus        43 ~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~  122 (507)
                      .-..|..+++.|+|..|..-|+++...-...        ...+.+.-....   .--...+++++.++.+.++|.+|+..
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------~~~~~ee~~~~~---~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYR--------RSFDEEEQKKAE---ALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhcc--------ccCCHHHHHHHH---HHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            3457889999999999999998874311000        000111100000   00112378999999999999999999


Q ss_pred             HHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        123 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       123 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      ..++|..+|+|..++|..|.++..+|+|+.|+..|+++++.+|+|..+..
T Consensus       280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999976544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.57  E-value=9.6e-07  Score=71.82  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK  174 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~  174 (507)
                      ..++.-|......|+|++|++.|+.+....|.   ...+.+.|+.+|++.|++++|+..++++++++|+++.   +++++
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            44788899999999999999999999999884   4578899999999999999999999999999999986   57777


Q ss_pred             hhhhhhc
Q psy12000        175 ACNTYKL  181 (507)
Q Consensus       175 a~~~~~~  181 (507)
                      |.+++..
T Consensus        91 gL~~~~~   97 (142)
T PF13512_consen   91 GLSYYEQ   97 (142)
T ss_pred             HHHHHHH
Confidence            7776654

>KOG0543|consensus

Probab=98.56  E-value=1e-06  Score=83.14  Aligned_cols=116  Identities=22%  Similarity=0.185  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---------------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      .-.-|..|++.|+|..|...|++++..-+.               -..++.|+|.|+.++++|.+|+..++++|..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            345789999999999999999998876431               12478899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000        168 RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH  223 (507)
Q Consensus       168 ~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  223 (507)
                      ..|++..|.++..++.++.|...|+++++     ..|.+..+...|..+-.+..++
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999998888999999888888753     3444555555555555444433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.54  E-value=6.9e-07  Score=74.27  Aligned_cols=93  Identities=6%  Similarity=-0.055  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      ..+..|.-++.+|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+...+++++......|.+++.+
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence            37889999999999999999999999999999999999999999999999999999999888888876666666666666


Q ss_pred             cChHHHHHhhHHH
Q psy12000        182 FTSRAAENQLKPI  194 (507)
Q Consensus       182 ~~~~~A~~~l~~~  194 (507)
                      |+.+.|...|+.+
T Consensus       119 ~~~~~A~~~f~~a  131 (165)
T PRK15331        119 RKAAKARQCFELV  131 (165)
T ss_pred             CCHHHHHHHHHHH
Confidence            6666666555543

>PRK11906 transcriptional regulator; Provisional

Probab=98.53  E-value=6.1e-06  Score=79.91  Aligned_cols=142  Identities=16%  Similarity=0.194  Sum_probs=107.1

Q ss_pred             hHHHHHHHhhc---CHHHHHHHHHHHh---cCCCCChhhHHHHHHHHHhh---c------cHHHHHHHHHhCCCCccccc
Q psy12000         10 AWLGYCHFHLG---QYKQALGIYETLR---HLPNPPEDTEFNIASCYFYL---G------MYLQANQILEKVPPSRAKTR   74 (507)
Q Consensus        10 ~~lg~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---g------~~~eA~~~~~~~~~~~~~~~   74 (507)
                      +..|...+..+   ..+.|..+|.+++   +.+|....++-.++.|++..   |      ...+|.+..+++...++   
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~---  335 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT---  335 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC---
Confidence            44455554433   3567899999999   99999999999999998765   1      11222222222222111   


Q ss_pred             hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHH
Q psy12000         75 LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  154 (507)
                                             .++..+..+|.+....++++.|+..|++++..+|+...+++..|.+..-.|+.++|+
T Consensus       336 -----------------------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~  392 (458)
T PRK11906        336 -----------------------VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR  392 (458)
T ss_pred             -----------------------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence                                   123346788898899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        155 EQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       155 ~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      +.++++++.+|.-..+-.++-++
T Consensus       393 ~~i~~alrLsP~~~~~~~~~~~~  415 (458)
T PRK11906        393 ICIDKSLQLEPRRRKAVVIKECV  415 (458)
T ss_pred             HHHHHHhccCchhhHHHHHHHHH
Confidence            99999999999877665555554

>KOG4234|consensus

Probab=98.50  E-value=4.1e-07  Score=76.92  Aligned_cols=95  Identities=24%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhcCCchhh-----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhc
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLDHKDLLA-----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  474 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~  474 (507)
                      |.-.|.+|.|++|..-|..++...|..+.     ++.+.|-|..|+++++.|++...++|+++|.+..|+..++-.|-.+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            45677889999999999999998877643     5667899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCC
Q psy12000        475 FTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .+++.|..+|++|++.+|.+
T Consensus       182 ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcch
Confidence            99999999999999999987

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.49  E-value=1e-06  Score=79.21  Aligned_cols=111  Identities=18%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL  397 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (507)
                      .|+.|.-+++.|+|.+|...|..-++..|.+...                                         +...+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~-----------------------------------------~nA~y  182 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT-----------------------------------------PNAYY  182 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc-----------------------------------------chhHH
Confidence            5788888888999999999998876655432210                                         11235


Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhcCCch---hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  469 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~  469 (507)
                      +||..+|.+|+|++|...|..+.+..|+.   ++..+.+|.|..++|+.|+|...|+++++.+|+.+.+...+..
T Consensus       183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            56777888888999999999888877766   5678899999999999999999999999999999988654433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.46  E-value=2.5e-06  Score=82.89  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      .....++++.|+..|+++.+.+|+   +...++.++...++..+|++.+.++....+..                     
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------------  233 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---------------------  233 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------------
Confidence            334567889999999998888764   66778888888888888888887765332221                     


Q ss_pred             HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                           .+.+...+..+...++++.|+.+.++++...|+....|+.||.||..+|+++.|+-.++.+-
T Consensus       234 -----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 -----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence                 11134567788888999999999999999999999999999999999999999998877653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1070|consensus

Probab=98.46  E-value=4.5e-05  Score=81.81  Aligned_cols=204  Identities=13%  Similarity=0.060  Sum_probs=162.7

Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-c---c---c-c-hHHHHHHhcCChhHHHHHHHH
Q psy12000         25 ALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-A---K---T-R-LSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        25 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~---~---~-~-~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      ..+-|++.+..+|+++-.|.....-....++.++|.+.++++.... +   .   + . +++++-..++.++....-.+.
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            4567888899999999999998888999999999999999986421 1   1   1 1 456666667766555554444


Q ss_pred             Hhh-cH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHH
Q psy12000         96 LED-SL--EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT--SRIA  170 (507)
Q Consensus        96 l~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~a  170 (507)
                      ..+ +.  .-+..|..+|.+.+.+++|.++|+.+++.......+|...|...++.++-++|.+++.++++.-|.  +...
T Consensus      1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred             HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence            332 21  237889999999999999999999999999989999999999999999999999999999999998  5555


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      ..--|.+.|+.|+.+.+...|+...     ...|...+.|.-++..-++.|+.+.+..+|+++
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEgll-----~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLL-----SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHHHH-----hhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            5555788899999999988888653     233445578888888888889989998888875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.45  E-value=4.2e-06  Score=81.37  Aligned_cols=120  Identities=18%  Similarity=0.118  Sum_probs=105.1

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChH
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR  185 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~  185 (507)
                      +-.+....++++.|+++|+++.+.+|+   +...++.++...++..+|++.+.+.+..+|.+...+...+..++..++++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            445556678999999999999999986   45568999999999999999999999999999888888898899999999


Q ss_pred             HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      .|....+++.     ...|...+.|..|+.+|...|++++|+-.+...
T Consensus       252 lAL~iAk~av-----~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  252 LALEIAKKAV-----ELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHH-----HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999888765     356777789999999999999999999888754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=2.4e-06  Score=68.42  Aligned_cols=66  Identities=23%  Similarity=0.129  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      .+.+|.++...|+.++|+.+|++++...++   -..++..+|.++..+|++++|+..+++.+...|++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            678999999999999999999999997643   356889999999999999999999999999988843

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=3.5e-06  Score=67.44  Aligned_cols=99  Identities=21%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000         41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI  120 (507)
Q Consensus        41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~  120 (507)
                      .++|.+|.++-.+|+.++|+..|+++.........                       ....++.+|..+...|++++|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----------------------~~~a~i~lastlr~LG~~deA~   58 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----------------------RRRALIQLASTLRNLGRYDEAL   58 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----------------------HHHHHHHHHHHHHHcCCHHHHH
Confidence            46778888888888888888888877543221100                       0112567888999999999999


Q ss_pred             HHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        121 DIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       121 ~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      ..+++.+...|+   +..+...++.+....|+.++|++.+-..+.
T Consensus        59 ~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   59 ALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999988887   777888889999999999999988876653

>KOG3616|consensus

Probab=98.43  E-value=0.00043  Score=69.83  Aligned_cols=306  Identities=13%  Similarity=0.079  Sum_probs=176.4

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  184 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~  184 (507)
                      .-|.-+...|+++.|+..|-++--        ....-.+-+...+|.+|+.+++.+...+.... .+-..+.-+...|++
T Consensus       711 ~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~s~-yy~~iadhyan~~df  781 (1636)
T KOG3616|consen  711 AWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTASG-YYGEIADHYANKGDF  781 (1636)
T ss_pred             HHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccc-cchHHHHHhccchhH
Confidence            457777888999999998866421        11122345667899999999887765543322 122334445567889


Q ss_pred             HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHH
Q psy12000        185 RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAA  264 (507)
Q Consensus       185 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  264 (507)
                      +.|++.|.+.             .....-..+|-+.|++.+|..+..+......  .+   ..|....+.....+.|.+|
T Consensus       782 e~ae~lf~e~-------------~~~~dai~my~k~~kw~da~kla~e~~~~e~--t~---~~yiakaedldehgkf~ea  843 (1636)
T KOG3616|consen  782 EIAEELFTEA-------------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEA--TI---SLYIAKAEDLDEHGKFAEA  843 (1636)
T ss_pred             HHHHHHHHhc-------------chhHHHHHHHhccccHHHHHHHHHHhcCchh--HH---HHHHHhHHhHHhhcchhhh
Confidence            9999887753             1122345678899999999998877632211  11   1222222233334566677


Q ss_pred             HHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        265 QALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-DSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      +++|-.++.+    +.      -..+|-+-|.+++.+.+..+   ..|+. ...+..+|.-|...|+...|...|.++.+
T Consensus       844 eqlyiti~~p----~~------aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  844 EQLYITIGEP----DK------AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             hheeEEccCc----hH------HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            6665433322    11      13456666666666654333   33433 34567789999999999999999988743


Q ss_pred             cCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH--H--HHHHHHHhhhcHHHH------HHHHHHHH--hHhhHHH
Q psy12000        344 EGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK--S--LMEYHQKLEDSLEEQ------LCLASIHF--LRCHYQE  411 (507)
Q Consensus       344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~------~~l~~~~~--~~~~~~~  411 (507)
                      -.  ..       ...|...+-|+.|+.+....+...  +  +.-+.+.++......      +..+.+.+  ..+-|+-
T Consensus       911 ~k--aa-------vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~  981 (1636)
T KOG3616|consen  911 FK--AA-------VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF  981 (1636)
T ss_pred             HH--HH-------HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence            21  10       113334456677777665544322  1  111222222110000      11112222  1244555


Q ss_pred             HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                      |.+.-+-+.+..  .+.++..+|+-+..-|++++|-+.|-.+++++.-|.
T Consensus       982 afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen  982 AFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred             HHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence            655555444432  345667788888889999999999988888875544

>KOG1941|consensus

Probab=98.42  E-value=0.00011  Score=68.11  Aligned_cols=310  Identities=15%  Similarity=0.120  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      ++..|.-++...++++|+..+.+.+..-.+..   ..+-.+..+...+|.|++++..--..+...-+-            
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------------   76 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------------   76 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------------
Confidence            55677788888999999999999887655432   344456678888888888876533322111000            


Q ss_pred             hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--CC-CCh-----HHHHHHHHHHHHh
Q psy12000        180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--EP-SVP-----QEYILKAVVQVTI  251 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--~~-~~~-----~~~~~~~~~~~~~  251 (507)
                           +++                ...-+++++++..+-+.-++.+++.+.+.-  .| ..+     ......+.++..+
T Consensus        77 -----~ds----------------~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl  135 (518)
T KOG1941|consen   77 -----EDS----------------DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL  135 (518)
T ss_pred             -----HHH----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence                 000                111256777887777777777777665421  11 111     1222334444444


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CC------chHHHHH
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT----SD------DSFNFNF  321 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~------~~~~~~l  321 (507)
                      +..+.+.+.|+.|..+-....+.-.+   ......||..+...+++++|+-+..++..+-.    ++      ..++|.+
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LE---lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm  212 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLE---LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM  212 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceee---eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence            44444444455554444333222222   23344689999999999999988777654322    22      2456778


Q ss_pred             HHHHHhhCCHHHHHHHHHhhccc--CCCchhhh---hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhc---H
Q psy12000        322 AQAKCALGQYKEAEEMFLLVQNE--GLKNDYVY---ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS---L  393 (507)
Q Consensus       322 g~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~---~  393 (507)
                      +.++..+|..-.|.++.+++.+.  ...+...+   +..+++.|-..++.+.||..|...-      .....+++.   +
T Consensus       213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am------~~m~~~gdrmgqv  286 (518)
T KOG1941|consen  213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM------GTMASLGDRMGQV  286 (518)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH------HHHhhhhhhHHHH
Confidence            99999999999999999887432  23333333   2345777888888888887765421      111111111   0


Q ss_pred             HHH----HHHHHHH-HhHhhHHHHHHHHHHHhhcCC----ch--hhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000        394 EEQ----LCLASIH-FLRCHYQEAIDIYKRILLDHK----DL--LALNVYGAMCYYKLDYYDVSQEQVAMYL  454 (507)
Q Consensus       394 ~~~----~~l~~~~-~~~~~~~~Ai~~~~~~l~~~p----~~--~~~~~~la~~y~~~g~~~~A~~~~~~~l  454 (507)
                      +..    .++...- ...+.-=+|++.-+++++.-.    +.  .+++-.++.+|..+|..|+=...+..+-
T Consensus       287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            000    0110000 001112347777777775332    22  3466778999999988877665555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.40  E-value=6.4e-06  Score=70.79  Aligned_cols=65  Identities=11%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      .+|.-+...|+|+.|.+.|+.+++.+|.+.-+..+.|...+--|+++-|.+-+.+.-+.||++|.
T Consensus       104 yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         104 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            34444444455555555555555555555555555555555555555555555555555555544

>KOG3617|consensus

Probab=98.30  E-value=0.00058  Score=69.88  Aligned_cols=352  Identities=11%  Similarity=0.037  Sum_probs=183.1

Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh-c-HHHH
Q psy12000         26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED-S-LEEQ  103 (507)
Q Consensus        26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~  103 (507)
                      .+.++++.+ +|++.  --..|.+...+|..++|...|++...-+.    +-.+....+....+.+..+.-.. . ...+
T Consensus       789 aRAlR~a~q-~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR~DL----lNKlyQs~g~w~eA~eiAE~~DRiHLr~Ty  861 (1416)
T KOG3617|consen  789 ARALRRAQQ-NGEED--EAKVAVLAIELGMLEEALILYRQCKRYDL----LNKLYQSQGMWSEAFEIAETKDRIHLRNTY  861 (1416)
T ss_pred             HHHHHHHHh-CCcch--hhHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhcccHHHHHHHHhhccceehhhhH
Confidence            344555543 44432  34567777888999999988887753222    22233333333222221111100 0 1127


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHH----------HHHhCCchh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKR----------ILLDHKDLL----------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~----------~l~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      ++.|.-+...++.+.|+++|++          +|..+|...          ..+.--|.-....|+.|.|+.+|..+-..
T Consensus       862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~  941 (1416)
T KOG3617|consen  862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY  941 (1416)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence            7888888888999999999987          344455332          33444466667788888888888876432


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC--------
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP--------  235 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~--------  235 (507)
                              +-...|++-+|+.++|...-+..          -+.-+-+.||..|-..|++.+|+..+.+...        
T Consensus       942 --------fs~VrI~C~qGk~~kAa~iA~es----------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen  942 --------FSMVRIKCIQGKTDKAARIAEES----------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred             --------hhheeeEeeccCchHHHHHHHhc----------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    22334666778887776432211          1223567888899999999999877754311        


Q ss_pred             --CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHH-HHH-------
Q psy12000        236 --SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVIL-YLS-------  305 (507)
Q Consensus       236 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~-~~~-------  305 (507)
                        .+-.+. +...++..-      ....-.|..||...+...         ..--..|.+.|.+.+|++ .|.       
T Consensus      1004 KEnd~~d~-L~nlal~s~------~~d~v~aArYyEe~g~~~---------~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 1004 KENDMKDR-LANLALMSG------GSDLVSAARYYEELGGYA---------HKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred             HhcCHHHH-HHHHHhhcC------chhHHHHHHHHHHcchhh---------hHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence              011100 000011110      122334445554332110         011245777788888886 332       


Q ss_pred             -H-hhhhcCCC-chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH--
Q psy12000        306 -S-IKSYYTSD-DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK--  380 (507)
Q Consensus       306 -~-~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--  380 (507)
                       - +...+|.. +..+..-+.-.....+|++|...+-.+.+.        ...|.-|..++  ..---++...+....  
T Consensus      1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~--------~~AlqlC~~~n--v~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF--------SGALQLCKNRN--VRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHhcCC--CchhHHHHHhcCcCcCC
Confidence             1 12334443 333333455666667788888877654321        11222232221  111122333332211  


Q ss_pred             -----HHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000        381 -----SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS  446 (507)
Q Consensus       381 -----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A  446 (507)
                           .-...+..          ++....++|.|.-|-+-|.++-..    ..+  .  .++.|.|+.++=
T Consensus      1138 ~~~e~~R~~vLeq----------vae~c~qQG~Yh~AtKKfTQAGdK----l~A--M--raLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQ----------VAELCLQQGAYHAATKKFTQAGDK----LSA--M--RALLKSGDTQKI 1190 (1416)
T ss_pred             CccHHHHHHHHHH----------HHHHHHhccchHHHHHHHhhhhhH----HHH--H--HHHHhcCCcceE
Confidence                 11222222          234556778999999888887542    111  1  245688888764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.29  E-value=2.5e-06  Score=63.37  Aligned_cols=61  Identities=26%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhC-------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      +..+|.+|..+|+|++|+++|++++...       |+...++.++|.|+..+|++++|++++++++++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6789999999999999999999999762       233568899999999999999999999998754

...

>KOG4234|consensus

Probab=98.29  E-value=1.6e-05  Score=67.43  Aligned_cols=105  Identities=19%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             HHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy12000         45 NIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK  124 (507)
Q Consensus        45 ~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~  124 (507)
                      .=|.-++..|+|++|..-|..+....+....               ...+      -.+.+.|.+..+++.++.||....
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---------------e~rs------Ily~Nraaa~iKl~k~e~aI~dcs  158 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTST---------------EERS------ILYSNRAAALIKLRKWESAIEDCS  158 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccH---------------HHHH------HHHhhhHHHHHHhhhHHHHHHHHH
Confidence            3455566777777777666655432221100               0000      014567788888999999999999


Q ss_pred             HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      ++|+++|.+..+....|.+|.++.+|++|++-|++++..+|....+
T Consensus       159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            9999999999999999999999999999999999999999987644

>KOG4648|consensus

Probab=98.28  E-value=8.2e-07  Score=81.22  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=92.8

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChH
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSR  478 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~  478 (507)
                      .|..++.+|+|++||++|.+.+..+|.++-.+.+.|++|+++.+|..|...+..++.++--...|+..++...+.++.-.
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCccC
Q psy12000        479 AAENQLKPILVSAGPRVRF  497 (507)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~  497 (507)
                      .|..++...++..|.+-+|
T Consensus       183 EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HHHHhHHHHHhhCcccHHH
Confidence            9999999999999987443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.27  E-value=1.4e-05  Score=81.41  Aligned_cols=72  Identities=11%  Similarity=0.042  Sum_probs=60.8

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      ++.++...|++++|...+++++..+|. ...+..+|.++...|++++|++.|++++.++|.+|+ +.+--++-|
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt-~~~~~~~~f  497 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT-LYWIENLVF  497 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-HHHHHhccc
Confidence            445566679999999999999999995 678889999999999999999999999999999996 444444444

>KOG3617|consensus

Probab=98.25  E-value=0.00091  Score=68.50  Aligned_cols=254  Identities=12%  Similarity=-0.000  Sum_probs=134.7

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE   97 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (507)
                      ..|+.+.|.+..+-+     .+..+|-++|....+-.+.+-|..++-.....                  .-..+.....
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a------------------RgaRAlR~a~  796 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA------------------RGARALRRAQ  796 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh------------------hhHHHHHHHH
Confidence            457777776665433     12347788888777777777776654332110                  0000111111


Q ss_pred             hcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000         98 DSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus        98 ~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +++ ++-...|.+-...|-.++|..+|++--..+        .+-..|...|.|++|.++.+.=-.++-.+  .++.+|.
T Consensus       797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~--Tyy~yA~  866 (1416)
T KOG3617|consen  797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIHLRN--TYYNYAK  866 (1416)
T ss_pred             hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhccceehhh--hHHHHHH
Confidence            112 233445666677788888988888753322        34567788889999888755422222211  2333333


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                      -+-..++.+.|++.|++...         +   .++   +.--..++-.+++.+-+- ..++.       .+..-|++.+
T Consensus       867 ~Lear~Di~~AleyyEK~~~---------h---afe---v~rmL~e~p~~~e~Yv~~-~~d~~-------L~~WWgqYlE  923 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKAGV---------H---AFE---VFRMLKEYPKQIEQYVRR-KRDES-------LYSWWGQYLE  923 (1416)
T ss_pred             HHHhhccHHHHHHHHHhcCC---------h---HHH---HHHHHHhChHHHHHHHHh-ccchH-------HHHHHHHHHh
Confidence            33344566666666655310         0   000   011122333333333221 11222       2233344444


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                      ..+.++.|+.+|....+          ++.+-.+..-+|+.++|-.+-+.     ..+..+.|.+|..|...|+.-+|+.
T Consensus       924 S~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  924 SVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             cccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHH
Confidence            44555555555543211          22344555667888887664433     2344678889999999999999999


Q ss_pred             HHHhhc
Q psy12000        337 MFLLVQ  342 (507)
Q Consensus       337 ~~~~~~  342 (507)
                      .|.++.
T Consensus       989 FfTrAq  994 (1416)
T KOG3617|consen  989 FFTRAQ  994 (1416)
T ss_pred             HHHHHH
Confidence            998764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.24  E-value=3.9e-06  Score=81.11  Aligned_cols=64  Identities=13%  Similarity=0.063  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL---NVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      ++.++++|.+|+..|+|++|+..|+++|..+|++.++   ++++|.||..+|++++|+..+++++..
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4558999999999999999999999999999999865   999999999999999999999999987

>KOG1941|consensus

Probab=98.20  E-value=0.00057  Score=63.57  Aligned_cols=63  Identities=13%  Similarity=0.109  Sum_probs=45.5

Q ss_pred             CCCCccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhhccHHHHHHHH
Q psy12000          1 MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED---TEFNIASCYFYLGMYLQANQIL   63 (507)
Q Consensus         1 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~eA~~~~   63 (507)
                      ||-.-..-...-|.-.+...++++|+....+.+..-.+...   .+-.+..+...+|.|++++...
T Consensus         1 mgq~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a   66 (518)
T KOG1941|consen    1 MGQDQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFA   66 (518)
T ss_pred             CccchhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHH
Confidence            44444555566788899999999999999998876443322   3344667788889999888754

>PRK11906 transcriptional regulator; Provisional

Probab=98.18  E-value=3.7e-05  Score=74.60  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhh---hhcCCCchHHHHHHHHHHhh---------CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000        297 FKDVILYLSSIK---SYYTSDDSFNFNFAQAKCAL---------GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA  364 (507)
Q Consensus       297 ~~~Ai~~~~~~~---~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  364 (507)
                      .+.|+.+|.++.   ..+|+...++-.++.|++..         ....+|.+.-+++++.++.+...             
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a-------------  340 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI-------------  340 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH-------------
Confidence            456777888888   77777766666677776653         12233444444444433322211             


Q ss_pred             hhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccch
Q psy12000        365 KTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD  444 (507)
Q Consensus       365 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~  444 (507)
                                                     ...+|.+....++++.|+..|++++..+|++..++++.|++..-.|+.+
T Consensus       341 -------------------------------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        341 -------------------------------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             -------------------------------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence                                           1223445556678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCchhhhhHHHhh-hhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        445 VSQEQVAMYLAQKPTSRIALNLKACN-TYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       445 ~A~~~~~~~l~~~P~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +|++.+++++++.|--..+-.++.|+ +|-..--+.+++.|-+--++...|
T Consensus       390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (458)
T PRK11906        390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHR  440 (458)
T ss_pred             HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccch
Confidence            99999999999999999999999999 776566777888665544444333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.17  E-value=0.00021  Score=60.18  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=112.8

Q ss_pred             hcCChhHHHHHHHHHhhcH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         82 KLGDEKSLMEYHQKLEDSL--EEQLCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      .+..+..+.++.+.+...|  .+.+.||......|++.||...|++++.- .-+++..+..+|...+..+++..|...++
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          69 KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3333444555555555444  34889999999999999999999999864 45788889999999999999999999999


Q ss_pred             HHHhcCCCcH--HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        159 MYLAQKPTSR--IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       159 ~~l~~~p~~~--~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      ++.+-+|...  ....+.+..+--.|.+.+|+..|+-.+. .+     ..++++...+..+.++|+.++|-..+..
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-~y-----pg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-YY-----PGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-hC-----CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            9999888654  3566778888888999999999887652 21     1346777788888899988888665543

>KOG3616|consensus

Probab=98.17  E-value=0.0042  Score=63.03  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=89.7

Q ss_pred             HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHH
Q psy12000        290 SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLS  369 (507)
Q Consensus       290 ~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  369 (507)
                      .....+++.+|+.+++.+...... ..++-..+.-|...|+|+-|.+.|.++--..  +       -...|-+.|+|+.|
T Consensus       741 aai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~~~--d-------ai~my~k~~kw~da  810 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADLFK--D-------AIDMYGKAGKWEDA  810 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcchhH--H-------HHHHHhccccHHHH
Confidence            344567888888877766543322 2344557888999999999999998752111  0       12245567888888


Q ss_pred             HHHHHHcCCcHHHH-HHHHHhhhcHHHH--HHHH-HHHHhHhhHHHHHHHHHHHh----------hcCCchh-hhHHHHH
Q psy12000        370 FHLSHKLGDEKSLM-EYHQKLEDSLEEQ--LCLA-SIHFLRCHYQEAIDIYKRIL----------LDHKDLL-ALNVYGA  434 (507)
Q Consensus       370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~l~-~~~~~~~~~~~Ai~~~~~~l----------~~~p~~~-~~~~~la  434 (507)
                      +.+..+-......+ .++.+.. ..+.+  ..-+ ..|..-|..+.||..|++.-          +..|+.. +.+..+|
T Consensus       811 ~kla~e~~~~e~t~~~yiakae-dldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~  889 (1636)
T KOG3616|consen  811 FKLAEECHGPEATISLYIAKAE-DLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA  889 (1636)
T ss_pred             HHHHHHhcCchhHHHHHHHhHH-hHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence            88877754443322 2222211 11111  1111 12223366777888777642          2345543 4666778


Q ss_pred             hhccccccchhHHHHHHHH
Q psy12000        435 MCYYKLDYYDVSQEQVAMY  453 (507)
Q Consensus       435 ~~y~~~g~~~~A~~~~~~~  453 (507)
                      .-|...|+...|...|-++
T Consensus       890 ~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  890 KELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHHhccChhHHHHHHHhh
Confidence            8888888888887665433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=0.00019  Score=60.40  Aligned_cols=165  Identities=15%  Similarity=0.123  Sum_probs=113.7

Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-hcCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-YYTSDDSFNFNFAQAKCALGQYKEAE  335 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~  335 (507)
                      ...++.+|.+-+...       .+...+..||..+...|++.+|...|.++.. ...+++..++.++.+.+..+++..|.
T Consensus        72 P~R~~Rea~~~~~~A-------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~  144 (251)
T COG4700          72 PERHLREATEELAIA-------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ  144 (251)
T ss_pred             hhHHHHHHHHHHhhc-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence            334555555544321       1344567899999999999999998887664 44567778888999999999999999


Q ss_pred             HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000        336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  415 (507)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~  415 (507)
                      ..++++.+.++.-                                          .+++..+.++.++-..|++++|...
T Consensus       145 ~tLe~l~e~~pa~------------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesa  182 (251)
T COG4700         145 QTLEDLMEYNPAF------------------------------------------RSPDGHLLFARTLAAQGKYADAESA  182 (251)
T ss_pred             HHHHHHhhcCCcc------------------------------------------CCCCchHHHHHHHHhcCCchhHHHH
Confidence            9999987544310                                          0111223444555667899999999


Q ss_pred             HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHH----hcCCCchhhhhHHHhhhhh
Q psy12000        416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL----AQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l----~~~P~~~~a~~~~~~~~~~  473 (507)
                      |+.++...|+....-+ .+.-+.++|+.++|...+..+.    +..|-..  ...++|+.+.
T Consensus       183 fe~a~~~ypg~~ar~~-Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r--kh~reW~~~A  241 (251)
T COG4700         183 FEVAISYYPGPQARIY-YAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR--KHHREWIKTA  241 (251)
T ss_pred             HHHHHHhCCCHHHHHH-HHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHH
Confidence            9999999998765333 3566779999999887665554    3444333  3456666553

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.10  E-value=4.3e-05  Score=64.30  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHH
Q psy12000         22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE  101 (507)
Q Consensus        22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (507)
                      |+.|.+.++.....+|.+++.+++-|..+..+.++...-+                                        
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e----------------------------------------   46 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE----------------------------------------   46 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH----------------------------------------
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch----------------------------------------
Confidence            6788899998889999999999999988877666532211                                        


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCcHH
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-----------YDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~  169 (507)
                                ...-+++|++-|+++|.++|+..++++.+|.+|...+.           |++|.++|+++...+|++..
T Consensus        47 ----------s~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   47 ----------SKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ----------HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                      11236789999999999999999999999999987664           88899999999999999985

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2796|consensus

Probab=98.05  E-value=5.3e-05  Score=67.22  Aligned_cols=138  Identities=16%  Similarity=0.228  Sum_probs=110.4

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLP-NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      +..++..+|.|.-....+.++++.+ |..+.....+|++.++-|+.+.|..+|+.+.+....          +.      
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----------L~------  246 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----------LD------  246 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------hh------
Confidence            5667888899999999999999987 556677778999999999999999988865321100          00      


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                          .+........+.+.+|..+++|.+|...|.+++..+|.++.+..+.|.|.+.+|+...|++.++.++...|....
T Consensus       247 ----~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  247 ----GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             ----ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence                000001114567889999999999999999999999999999999999999999999999999999999998653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.05  E-value=0.00096  Score=60.29  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             hcCHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000         19 LGQYKQALGIYETLRHLPNPP--EDTEFNIASCYFYLGMYLQANQILEKVP   67 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~~~   67 (507)
                      .+.+..+...+...+...+..  .......+..+...+++..+...+....
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL   86 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            355666666666666666552  4555666666666666666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.02  E-value=1.1e-05  Score=52.12  Aligned_cols=40  Identities=23%  Similarity=-0.066  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM  142 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  142 (507)
                      ++.+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            5567777777777777777777777777777777776664

>KOG4648|consensus

Probab=98.00  E-value=3.5e-05  Score=70.82  Aligned_cols=104  Identities=18%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      -|+.||.+|+|++||.+|.+.+..+|.++-.+.+.|..|++++.|..|+..+..+...+.   .                
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---~----------------  163 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---L----------------  163 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---H----------------
Confidence            588888999999999999999888998888888888888888888888877665532110   0                


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA  141 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  141 (507)
                             ....+...|..-...|...+|-+-++.+|...|++.+..-..+
T Consensus       164 -------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  164 -------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             -------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence                   0111344566667778888888888888888888766554433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=9.5e-06  Score=52.48  Aligned_cols=42  Identities=17%  Similarity=-0.005  Sum_probs=39.3

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHH
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIAS   48 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~   48 (507)
                      .+.+.+|..|..+|++++|++.|+++++.+|+++++|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467789999999999999999999999999999999999886

>KOG2796|consensus

Probab=97.96  E-value=0.0006  Score=60.70  Aligned_cols=141  Identities=18%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHhhhhc-CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        285 QCMASSFFLLRSFKDVILYLSSIKSYY-TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      .++..++.-.|.|.-.+..++++.+.+ |.++...-.||.+-++.|+.+.|..+|+++-+..                  
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~------------------  242 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT------------------  242 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------------
Confidence            467888888999999999999988776 4566777779999999999999999999764211                  


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                                .++......+..+          ...+.++...++|..|.-.|++++..+|.++-+..+.|.|..-+|+.
T Consensus       243 ----------~kL~~~q~~~~V~----------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  243 ----------QKLDGLQGKIMVL----------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             ----------hhhhccchhHHHH----------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence                      0000000000001          11234566668999999999999999999999989999999999999


Q ss_pred             hhHHHHHHHHHhcCCCchhh
Q psy12000        444 DVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       444 ~~A~~~~~~~l~~~P~~~~a  463 (507)
                      ..|++.++.++++.|....-
T Consensus       303 ~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  303 KDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             HHHHHHHHHHhccCCccchh
Confidence            99999999999999997654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.96  E-value=2.6e-05  Score=75.58  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=61.6

Q ss_pred             cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch---HHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS---FNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      +|+...++..+|.+|+..|+|++|+..|++++..+|++..   +++|+|.+|..+|++++|+++|++++..
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556667788999999999999999999999999999874   4899999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.95  E-value=1.2e-05  Score=59.64  Aligned_cols=59  Identities=27%  Similarity=0.275  Sum_probs=48.9

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhc----C---CchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLD----H---KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~----~---p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      .+|.+++..|+|++|+++|+++++.    .   |+....+.++|.+|..+|++++|++.+++++++
T Consensus        10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567888889999999999999852    2   333557889999999999999999999999876

...

>KOG4642|consensus

Probab=97.95  E-value=3.7e-05  Score=67.20  Aligned_cols=91  Identities=19%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  184 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~  184 (507)
                      .-|.-++...+|+.|++.|.++|.++|..+..+.+.|.||+++++|+.+.....++++.+|+...+.+.++........+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            35677788899999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             HHHHHhhHHHH
Q psy12000        185 RAAENQLKPIL  195 (507)
Q Consensus       185 ~~A~~~l~~~~  195 (507)
                      +.|+..++...
T Consensus        95 ~eaI~~Lqra~  105 (284)
T KOG4642|consen   95 DEAIKVLQRAY  105 (284)
T ss_pred             cHHHHHHHHHH
Confidence            88888877653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.94  E-value=0.0024  Score=57.56  Aligned_cols=200  Identities=19%  Similarity=0.167  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh-hhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC-NTY  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~-~~~  179 (507)
                      ....+..+...+++..++..+...+.  ..+.....+..++.++...+++.++++.+...+...+........... ++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY  141 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence            45566777777788888888877776  566777777777888888888888888888877766665333222233 444


Q ss_pred             hccChHHHHHhhHHHHHhhCCCCCC---ChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        180 KLFTSRAAENQLKPILVSILPPLID---VIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                      ..++++.|...+.....     ..+   .........+..+...+++++|+..+.+.....+..                
T Consensus       142 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------  200 (291)
T COG0457         142 ELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD----------------  200 (291)
T ss_pred             HcCCHHHHHHHHHHHHh-----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc----------------
Confidence            55555555555554321     111   111222223333344444444444443321111100                


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                                             .......++.++...+++++|+..+..+....|........++..+...|.++++..
T Consensus       201 -----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         201 -----------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             -----------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence                                   112233567888888899999999888888777644456667877777778999999


Q ss_pred             HHHhhcccCC
Q psy12000        337 MFLLVQNEGL  346 (507)
Q Consensus       337 ~~~~~~~~~~  346 (507)
                      .+.+++...+
T Consensus       258 ~~~~~~~~~~  267 (291)
T COG0457         258 ALEKALELDP  267 (291)
T ss_pred             HHHHHHHhCc
Confidence            9988875543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.93  E-value=8.6e-06  Score=49.11  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=31.4

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHH
Q psy12000        122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus       122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  155 (507)
                      +|+++|+.+|+++.+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999963

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00039  Score=63.33  Aligned_cols=134  Identities=13%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+..+.-|......|++.+|...|..++...|.+.++...++.|+...|+.++|...+...+......+... +      
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l------  206 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-L------  206 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-H------
Confidence            334455566788899999999999999999999999999999999999999999999988765333221100 0      


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                             ..        .+.+..-....++.    ..+++.+..+|++.++.+.+|..+...|+.++|.+.+-.+++.+-
T Consensus       207 -------~a--------~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         207 -------QA--------QIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             -------HH--------HHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                   00        00000001111111    223344556777777777777777777777777777666665543

>KOG2053|consensus

Probab=97.87  E-value=0.04  Score=57.64  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=37.2

Q ss_pred             HHHHhhcCHHHHHHHHH-HhhhhcCCCchHHHH-HHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000        289 SSFFLLRSFKDVILYLS-SIKSYYTSDDSFNFN-FAQAKCALGQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       289 ~~~~~~~~~~~Ai~~~~-~~~~~~~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~~~~~~~~  347 (507)
                      .++..+|+|++|.+++. ...+..+..+..+-+ .+..+...++|.+-.+.-.+++..+++
T Consensus       198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            45667788888888773 333333333333333 355667778888888888887755543

>KOG0545|consensus

Probab=97.87  E-value=6.4e-05  Score=65.97  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             HHHHHhHhhHHHHHHHHHHHh--------hcCCchhh----------hHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        400 ASIHFLRCHYQEAIDIYKRIL--------LDHKDLLA----------LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l--------~~~p~~~~----------~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                      |+-.|..|+|.+|++.|..++        +..|..+.          ++.+.+-|+.+.|+|-++++....+|..+|+|.
T Consensus       185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv  264 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV  264 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence            345566788888888777664        45566543          456788999999999999999999999999999


Q ss_pred             hhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        462 IALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       462 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .|+..++-.+...++...|+++|+++++.+|.-
T Consensus       265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999999999999975

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.86  E-value=1e-05  Score=48.75  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHH
Q psy12000         28 IYETLRHLPNPPEDTEFNIASCYFYLGMYLQAN   60 (507)
Q Consensus        28 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~   60 (507)
                      +|+++++.+|+++++|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478999999999999999999999999999996

>KOG4555|consensus

Probab=97.82  E-value=0.00034  Score=55.27  Aligned_cols=92  Identities=10%  Similarity=-0.060  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-H---HHHHHhhhhh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR-I---ALNLKACNTY  179 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~---a~~~~a~~~~  179 (507)
                      -..|......|+.+.|++.|.++|...|..+.+|.+.|..+--.|+.++|++-+++++....+-. .   ++.-.+.++.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            34577788899999999999999999999999999999999999999999999999998643332 2   4666778888


Q ss_pred             hccChHHHHHhhHHHH
Q psy12000        180 KLFTSRAAENQLKPIL  195 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~  195 (507)
                      ..|+.+.|...|+...
T Consensus       127 l~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAA  142 (175)
T ss_pred             HhCchHHHHHhHHHHH
Confidence            8888888888887653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.80  E-value=0.039  Score=53.37  Aligned_cols=199  Identities=12%  Similarity=0.039  Sum_probs=103.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh----hhccChHHHHHhhHHHHHhhCCC--CCCChh----HhH
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT----YKLFTSRAAENQLKPILVSILPP--LIDVIP----ESR  210 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~----~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~----~~~  210 (507)
                      -....+.++...|-.++.-+...+|.......+...-.    .-.+ -+.--+-++++++ .+..  .-+...    .-.
T Consensus       305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~-DD~~~Tklr~yL~-lwe~~qs~DiDrqQLvh~L  382 (549)
T PF07079_consen  305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE-DDESYTKLRDYLN-LWEEIQSYDIDRQQLVHYL  382 (549)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc-chHHHHHHHHHHH-HHHHHHhhcccHHHHHHHH
Confidence            34456778888888888888888888775433211100    0000 0111111111110 0000  000000    112


Q ss_pred             HHHHHHHHhhcc-HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC---cHHHHHHHHHHHHHhCCCcccccchhhh--
Q psy12000        211 LNLVIYHLKQEE-HQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG---SREMVKAAQALFQLVGSSQSECDTVPGR--  284 (507)
Q Consensus       211 ~~l~~~~~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~--  284 (507)
                      ..-|.-+.+.|. -++|+++++.+..-.+.+......+.....+.+.   +...+..-..+-+.+.+....+-.+.-.  
T Consensus       383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei  462 (549)
T PF07079_consen  383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI  462 (549)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence            234556777887 6778888876644333333333333333332110   0111111111111121111111111111  


Q ss_pred             -hHH--HHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        285 -QCM--ASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       285 -~~l--a~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                       ..|  |..++.+|+|.++.-+-.-+.+..| .+.++-.+|.+++...+|++|-.++.++.
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence             123  4567899999999998888888889 55677779999999999999999999874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4555|consensus

Probab=97.77  E-value=0.00063  Score=53.80  Aligned_cols=99  Identities=14%  Similarity=-0.011  Sum_probs=80.2

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCc-cccchHHHHHHhcCChhHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR-AKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   90 (507)
                      -|......|+.+.|++.|.+++...|..+.+|.+.++.+..+|+.++|+..++++.+.. ...+.               
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt---------------  113 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT---------------  113 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH---------------
Confidence            37778889999999999999999999999999999999999999999999998875411 11110               


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL  133 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  133 (507)
                      .        -..+...|.+|..+|+-+.|..-|+.+-+....+
T Consensus       114 a--------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  114 A--------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             H--------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            0        0125678999999999999999999887766543

>KOG1070|consensus

Probab=97.72  E-value=0.004  Score=67.61  Aligned_cols=228  Identities=11%  Similarity=0.066  Sum_probs=148.3

Q ss_pred             CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCC----ChHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHhCCC
Q psy12000        203 IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPS----VPQEYILKAVVQVTIGQDTG----SREMVKAAQALFQLVGSS  274 (507)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~  274 (507)
                      .|...-.|.++...++..++.++|.+..++..+.    ..++....-.+++.+-....    ....|+.|-++       
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy------- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY------- 1526 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------
Confidence            3445556888888888888888888877765332    22222222223333322222    23344444432       


Q ss_pred             cccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhh
Q psy12000        275 QSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS  354 (507)
Q Consensus       275 ~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  354 (507)
                         ++.+..+..|.-+|.+.+++++|.++++...+...+...+|..+|..++++.+-++|...+.+++.--|...+    
T Consensus      1527 ---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH---- 1599 (1710)
T KOG1070|consen 1527 ---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH---- 1599 (1710)
T ss_pred             ---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----
Confidence               3344445567888999999999999888877665566667778899999999889999999888654332111    


Q ss_pred             hhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH
Q psy12000        355 HLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA  434 (507)
Q Consensus       355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la  434 (507)
                                                  .+.+...          +.+.|..|+-+.+...|+-.+..+|.-.+++.-..
T Consensus      1600 ----------------------------v~~Iskf----------AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1600 ----------------------------VEFISKF----------AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             ----------------------------HHHHHHH----------HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence                                        1111111          23556678888999999999999998888776666


Q ss_pred             hhccccccchhHHHHHHHHHhcC-CCchhhhhHHHhhhhhcCChHHHHH
Q psy12000        435 MCYYKLDYYDVSQEQVAMYLAQK-PTSRIALNLKACNTYKLFTSRAAEN  482 (507)
Q Consensus       435 ~~y~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~  482 (507)
                      ..-.+.|..+.....|+.++.+. +-.-+-..++=|+-|+-..|+....
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            67778888899999999998763 2222333456777777565554444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=3.6e-05  Score=46.52  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=28.4

Q ss_pred             hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      .+++.+|.+|+++|++++|++.++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467788999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=3.6e-05  Score=46.57  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      .+++.+|.+|..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            467788999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=7.4e-05  Score=45.16  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      .+++++|.++..+|++++|+..|+++++.+|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35566666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0037  Score=57.10  Aligned_cols=142  Identities=16%  Similarity=0.061  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHhhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         87 KSLMEYHQKLEDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        87 ~~~~~~~~~l~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                      ..+.+...++...+ +..+..+.-....|++.+|...|..++...|++.++...++.|+...|+.+.|...+..+-....
T Consensus       120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            34455555443222 33677788888999999999999999999999999999999999999999999988766432222


Q ss_pred             CcHHHHHHHhhh--hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000        166 TSRIALNLKACN--TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP  235 (507)
Q Consensus       166 ~~~~a~~~~a~~--~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~  235 (507)
                      +.. +.-+.+.+  +.+.....+....-..      ...+|.+.++++.++..+...|++++|.+.+-.+.+
T Consensus       200 ~~~-~~~l~a~i~ll~qaa~~~~~~~l~~~------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         200 DKA-AHGLQAQIELLEQAAATPEIQDLQRR------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             hhH-HHHHHHHHHHHHHHhcCCCHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            221 11122222  1121121111111111      134567788999999999999999999998865533

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.66  E-value=0.00032  Score=59.15  Aligned_cols=55  Identities=13%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc-----------chhHHHHHHHHHhcCCCchhh
Q psy12000        409 YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-----------YDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       409 ~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~-----------~~~A~~~~~~~l~~~P~~~~a  463 (507)
                      +++||.-|++++..+|+..++.+.+|.+|..++.           |++|.++|+++.+.+|+|...
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            4555555555555555555555555555554442           455555566666666665554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.65  E-value=0.067  Score=56.18  Aligned_cols=302  Identities=12%  Similarity=-0.004  Sum_probs=167.2

Q ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh--------cHHHHHHHHHHH
Q psy12000         39 PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED--------SLEEQLCLASIH  110 (507)
Q Consensus        39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~la~~~  110 (507)
                      ..+.+..-+......|...+|+...-.+.+......++-.....+.+...+......+..        .|.-.+..|...
T Consensus       346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~  425 (894)
T COG2909         346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL  425 (894)
T ss_pred             hhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Confidence            357788899999999999999999888765333222222222233333333333333322        334467788999


Q ss_pred             HHhhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHHhh
Q psy12000        111 FLRCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI-----ALNLKAC  176 (507)
Q Consensus       111 ~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----a~~~~a~  176 (507)
                      ..+.++++|..+..++...-|.         ..+..-..|.+....|++++|+++.+.++..-|.+..     +....+.
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            9999999999999998776543         1233445678889999999999999999987776543     3334455


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHHhhcc--HHHHHHHHHhc----CCCCh-HHHHHHHHH
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHLKQEE--HQEAFDLIKNL----EPSVP-QEYILKAVV  247 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~--~~~A~~~l~~~----~~~~~-~~~~~~~~~  247 (507)
                      ...-.|++.+|....+...+ .........-+++  ..-+.++..+|+  +.+....+..+    .+..| ..+.+++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            55667888888877665432 1001111112222  334566777883  33322222211    11111 122222222


Q ss_pred             HHHhhh--ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-chHHH----H
Q psy12000        248 QVTIGQ--DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-DSFNF----N  320 (507)
Q Consensus       248 ~~~~g~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-~~~~~----~  320 (507)
                      ....+.  ...+......+.+.....  .+...+...+...|+.+.+..|+.++|...++.+.....+. +.+.+    .
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~  662 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY  662 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            222111  111111111111111110  11111111122368999999999999998887765432211 11111    1


Q ss_pred             HH--HHHHhhCCHHHHHHHHHhhcc
Q psy12000        321 FA--QAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       321 lg--~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      +.  ..-..+|++++|.....+...
T Consensus       663 ~v~~~lwl~qg~~~~a~~~l~~s~~  687 (894)
T COG2909         663 KVKLILWLAQGDKELAAEWLLKSGD  687 (894)
T ss_pred             HhhHHHhcccCCHHHHHHHHHhccC
Confidence            22  233347999999999887543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.63  E-value=0.011  Score=55.93  Aligned_cols=224  Identities=17%  Similarity=0.106  Sum_probs=140.8

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHHHHH
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDT-EFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFHLSH   81 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~   81 (507)
                      -+.+.-+.+....|+|+.|.+-|+.++. +|..-.+ .-.+-.-...+|..+.|..+.+.+....+.-    +..+..-+
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~  199 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC  199 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            3455568888899999999999998876 5543211 1112222346799999999887764432221    22333333


Q ss_pred             hcCChhHHHHHHH------HHhhcHHH----HHHHHHHH-HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH
Q psy12000         82 KLGDEKSLMEYHQ------KLEDSLEE----QLCLASIH-FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  150 (507)
Q Consensus        82 ~~~~~~~~~~~~~------~l~~~~~~----~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  150 (507)
                      .-++.+.......      .+.+...+    .+.-+... ...-+...|.+.-.++++..|+...+-..-+..+++.|+.
T Consensus       200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~  279 (531)
T COG3898         200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL  279 (531)
T ss_pred             hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence            3444443332221      11111111    12222221 2235678899999999999999999998999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHH
Q psy12000        151 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLI  230 (507)
Q Consensus       151 ~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l  230 (507)
                      .++-.+++.+-+.+|.-..+.     +|......+.+..-++..  +.+..+.+.+.+..+.++..-+.-|++..|....
T Consensus       280 rKg~~ilE~aWK~ePHP~ia~-----lY~~ar~gdta~dRlkRa--~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         280 RKGSKILETAWKAEPHPDIAL-----LYVRARSGDTALDRLKRA--KKLESLKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             hhhhhHHHHHHhcCCChHHHH-----HHHHhcCCCcHHHHHHHH--HHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999988766432     222333334444444444  2344566777788888888888888888887665


Q ss_pred             HhcCCCCh
Q psy12000        231 KNLEPSVP  238 (507)
Q Consensus       231 ~~~~~~~~  238 (507)
                      +......|
T Consensus       353 eaa~r~~p  360 (531)
T COG3898         353 EAAAREAP  360 (531)
T ss_pred             HHHhhhCc
Confidence            54433333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.62  E-value=0.00013  Score=44.00  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      .+++.+|.+++.+|++++|++.|++++..+|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345556666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.55  E-value=0.00012  Score=48.90  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ..+++|..++++|+|++|....+.+|+..|+|..+..++..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467899999999999999999999999999999999887766

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.55  E-value=0.0017  Score=65.67  Aligned_cols=121  Identities=17%  Similarity=0.104  Sum_probs=95.7

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE   97 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (507)
                      ...+.+.|.+.++...+..|+..-..+..|+++...|+.++|++.++++......-+                +..    
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----------------Ql~----  304 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----------------QLH----  304 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----------------hHH----
Confidence            356788899999999999999998889999999999999999999998764221110                000    


Q ss_pred             hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHH-HHHHHHHHhcCCH-------HHHHHHHHHH
Q psy12000         98 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALN-VYGAMCYYKLDYY-------DVSQEQVAMY  160 (507)
Q Consensus        98 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~-------~~A~~~~~~~  160 (507)
                        .--++.+|..+..+.+|++|..+|.++.+.+..+...| |..|-|+...|+.       ++|.+.+.++
T Consensus       305 --~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  305 --HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             --HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence              00156899999999999999999999999988765554 5577899999998       6666666655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471|consensus

Probab=97.54  E-value=0.016  Score=56.34  Aligned_cols=52  Identities=10%  Similarity=-0.022  Sum_probs=44.0

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      .+.++.+...+...-..+.-+..+++.+.+..++.++..|++..|.+.+...
T Consensus       215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s  266 (696)
T KOG2471|consen  215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS  266 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence            4567777888888888887777888899999999999999999999988654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.53  E-value=0.025  Score=55.53  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHHHHHHHHhhcccC-CCch-hhhhhhhcc
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEG-LKND-YVYISHLTK  358 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~  358 (507)
                      ++..+|.|..+.|+.++|++.++.+.+..|.  .-.+.++|..++...+.|.++...+.+--+.. |.++ ..|..    
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa----  336 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA----  336 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH----
Confidence            4557999999999999999999998876664  34678999999999999999999998864322 1222 22221    


Q ss_pred             cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh---hHHHHHHHHHHHhhcCCchhhhHHHH--
Q psy12000        359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIYKRILLDHKDLLALNVYG--  433 (507)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~~l~~~p~~~~~~~~l--  433 (507)
                                |.-.+...++.-.           ++       ....+|   --..|++.+.++++.+|.-+.....+  
T Consensus       337 ----------ALLkaRav~d~fs-----------~e-------~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~  388 (539)
T PF04184_consen  337 ----------ALLKARAVGDKFS-----------PE-------AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS  388 (539)
T ss_pred             ----------HHHHHHhhccccC-----------ch-------hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence                      1111111111000           00       001112   12448888999999999988754322  


Q ss_pred             ----HhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        434 ----AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       434 ----a~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                          =..+.+.|+ .||+.+---.++-.-+.+.|++++-|..
T Consensus       389 LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw  429 (539)
T PF04184_consen  389 LILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW  429 (539)
T ss_pred             CCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence                123557776 8888887677777777788888777754

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.52  E-value=0.13  Score=52.34  Aligned_cols=122  Identities=19%  Similarity=0.197  Sum_probs=93.4

Q ss_pred             hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHH
Q psy12000        294 LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLS  373 (507)
Q Consensus       294 ~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  373 (507)
                      ....+.|.++++......|+...+++..|.++...|+.++|++.|++++....  .  +              .      
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~--~--------------~------  301 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS--E--W--------------K------  301 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--h--H--------------H------
Confidence            45677788899999999999988888899999999999999999998863221  0  0              0      


Q ss_pred             HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHH-HHHhhccccccc-------hh
Q psy12000        374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNV-YGAMCYYKLDYY-------DV  445 (507)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~-~la~~y~~~g~~-------~~  445 (507)
                                    ++..  -....+++.+....+|++|..+|.++.+.+..+..++. ..|.|+..+|+.       ++
T Consensus       302 --------------Ql~~--l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~  365 (468)
T PF10300_consen  302 --------------QLHH--LCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKE  365 (468)
T ss_pred             --------------hHHH--HHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence                          0000  00133567777889999999999999998888877554 468999999999       77


Q ss_pred             HHHHHHHHHh
Q psy12000        446 SQEQVAMYLA  455 (507)
Q Consensus       446 A~~~~~~~l~  455 (507)
                      |.+.++++-.
T Consensus       366 a~~l~~~vp~  375 (468)
T PF10300_consen  366 AEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHH
Confidence            7777776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1914|consensus

Probab=97.46  E-value=0.14  Score=50.77  Aligned_cols=82  Identities=18%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhcCCchhhhHHHHH-hhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHH
Q psy12000        409 YQEAIDIYKRILLDHKDLLALNVYGA-MCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI  487 (507)
Q Consensus       409 ~~~Ai~~~~~~l~~~p~~~~~~~~la-~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  487 (507)
                      .+-|..+|+++.+..-..-.++..-| +=|+-+++..-|..+|+-.++.+||+|...+--..-+..+++...++++|..+
T Consensus       382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~  461 (656)
T KOG1914|consen  382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV  461 (656)
T ss_pred             HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            67788888888765433323322222 23667999999999999999999999998776666666778899999999999


Q ss_pred             HHh
Q psy12000        488 LVS  490 (507)
Q Consensus       488 ~~~  490 (507)
                      +..
T Consensus       462 l~s  464 (656)
T KOG1914|consen  462 LTS  464 (656)
T ss_pred             Hhc
Confidence            877

>KOG3364|consensus

Probab=97.45  E-value=0.00051  Score=54.67  Aligned_cols=78  Identities=31%  Similarity=0.279  Sum_probs=63.7

Q ss_pred             HHHHHHHHHh---HhhHHHHHHHHHHHhh-cCCchh-hhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        396 QLCLASIHFL---RCHYQEAIDIYKRILL-DHKDLL-ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~-~~p~~~-~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      +..++|....   ..+.++.|.+++.+++ .+|+.. ...+++|..++++|+|++|+...+..++..|+|.++..++..+
T Consensus        35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3445554443   2578999999999997 667654 4778899999999999999999999999999999999988887


Q ss_pred             hhh
Q psy12000        471 TYK  473 (507)
Q Consensus       471 ~~~  473 (507)
                      .-.
T Consensus       115 ed~  117 (149)
T KOG3364|consen  115 EDK  117 (149)
T ss_pred             HHH
Confidence            543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.43  E-value=0.00011  Score=43.98  Aligned_cols=32  Identities=34%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             hHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      +.+.+|+||.++|++++|++.|+.+++.+|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            46788999999999999999999999999985

>KOG0545|consensus

Probab=97.42  E-value=0.0029  Score=55.90  Aligned_cols=119  Identities=15%  Similarity=0.057  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000         42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG-DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI  120 (507)
Q Consensus        42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~  120 (507)
                      +...-|.-+++.|+|+||...|..++.      .+-++-.+-. ....+.+.   -+.....+++...++...|+|-+++
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~------~l~~L~lkEkP~e~eW~eL---dk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAII------CLRNLQLKEKPGEPEWLEL---DKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHH------HHHHHHhccCCCChHHHHH---HHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            455678889999999999998876631      0000000000 01111111   1112334788999999999999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       121 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      +...++|..+|++..+++..|.++...=+.++|..-|.+++..+|.-..
T Consensus       251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999999999999999999997654

>KOG4642|consensus

Probab=97.41  E-value=0.00023  Score=62.39  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             HHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000        402 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE  481 (507)
Q Consensus       402 ~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~  481 (507)
                      -++...+|..||+.|.+++..+|..+..+.+.++||+++.+++......+.++++.|+...+..++|........+..++
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            34445689999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHH
Q psy12000        482 NQLKPI  487 (507)
Q Consensus       482 ~~~~~~  487 (507)
                      ..+++-
T Consensus        99 ~~Lqra  104 (284)
T KOG4642|consen   99 KVLQRA  104 (284)
T ss_pred             HHHHHH
Confidence            877664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.38  E-value=0.14  Score=48.82  Aligned_cols=218  Identities=11%  Similarity=0.004  Sum_probs=117.9

Q ss_pred             hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCcHH---HHHHHhhhhhhcc-ChH
Q psy12000        113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA---QKPTSRI---ALNLKACNTYKLF-TSR  185 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~---a~~~~a~~~~~~~-~~~  185 (507)
                      .|..+-|+.+-+.+-..-|.-+.+....-...+..|+|+.|+++.+....   +.|+...   +..+-+...-... +..
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            45666666666666666666555555444555566666666666554432   2222221   1111000000000 111


Q ss_pred             HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHH
Q psy12000        186 AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ  265 (507)
Q Consensus       186 ~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  265 (507)
                      .|...-.     ....+.|...-+-.--+..+++.|+..++-.+++..=+..|+--+....++...|+  ...+.++.|.
T Consensus       247 ~Ar~~A~-----~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~  319 (531)
T COG3898         247 SARDDAL-----EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAK  319 (531)
T ss_pred             HHHHHHH-----HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHH
Confidence            1111100     01122333333445567788999999999888887633334332333333333343  3345555555


Q ss_pred             HHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh-hCCHHHHHHHHHhhccc
Q psy12000        266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA-LGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~~~~  344 (507)
                      .+-..      .++........+..-..-|+|..|..--+.+....|.... +..++.+-.. .|+-.++..++-+++..
T Consensus       320 ~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         320 KLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            43321      2233444555678888889999998877777777777654 4457776665 49999999999888743

>KOG0551|consensus

Probab=97.38  E-value=0.004  Score=57.52  Aligned_cols=91  Identities=20%  Similarity=0.066  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  178 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~  178 (507)
                      +-.-|+-|++.++|..|+..|.+.|.....    +...|.+.|-|.+-+|+|..|+.-+.++++.+|++..++..-|.++
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            556899999999999999999999998644    3456788999999999999999999999999999999999888888


Q ss_pred             hhccChHHHHHhhHH
Q psy12000        179 YKLFTSRAAENQLKP  193 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~  193 (507)
                      +.+..+..|..+.+.
T Consensus       164 ~eLe~~~~a~nw~ee  178 (390)
T KOG0551|consen  164 LELERFAEAVNWCEE  178 (390)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888766654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.37  E-value=0.00032  Score=41.85  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        136 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       136 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      +++.+|.|+.++|++++|++.|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666665

>KOG1586|consensus

Probab=97.33  E-value=0.095  Score=46.34  Aligned_cols=66  Identities=14%  Similarity=0.029  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHh-hcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        103 QLCLASIHFLR-CHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       103 ~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      +..+|.+|..- .++++||.+|+++-+.....      ...+.-.|..-..+++|.+|+.+|+++....-++.
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            45677777764 78888888888887665421      12334455555678888888888888776544444

>KOG0376|consensus

Probab=97.33  E-value=0.00023  Score=68.87  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=87.5

Q ss_pred             HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000        403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  482 (507)
Q Consensus       403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~  482 (507)
                      .+..++|+.|++.|.++++.+|+...+..+.+.++.+.+++-.|+.....+++.+|....++..+|...+.+..++.|..
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~   93 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL   93 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence            34457899999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcc
Q psy12000        483 QLKPILVSAGPRVR  496 (507)
Q Consensus       483 ~~~~~~~~~~~~~~  496 (507)
                      +|+......|.+..
T Consensus        94 ~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   94 DLEKVKKLAPNDPD  107 (476)
T ss_pred             HHHHhhhcCcCcHH
Confidence            99999999998754

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.23  E-value=0.0011  Score=44.17  Aligned_cols=43  Identities=28%  Similarity=0.303  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      +..+.+|..++++|+|++|.++.+.+++.+|++..+..++..+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567899999999999999999999999999999887665444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.21  E-value=0.007  Score=59.25  Aligned_cols=150  Identities=14%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      -...-+..+.++-++.-.++|+++|+-+++|..+|.-.  ..-..+|+++++++.+.....   +.........+...+.
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhh
Confidence            34445678889999999999999999999998888621  233566666666653211100   0000000000000000


Q ss_pred             HHHHhhc----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC
Q psy12000         93 HQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-KP  165 (507)
Q Consensus        93 ~~~l~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p  165 (507)
                        .....    +-....+|.+..+.|+.++|++.|+++++.+|.  +..++.+|..+++.++.|.++..++.+.-+. -|
T Consensus       250 --~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  250 --WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             --hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence              00000    112457999999999999999999999998874  6789999999999999999999999998543 25


Q ss_pred             CcHH
Q psy12000        166 TSRI  169 (507)
Q Consensus       166 ~~~~  169 (507)
                      .+..
T Consensus       328 kSAt  331 (539)
T PF04184_consen  328 KSAT  331 (539)
T ss_pred             chHH
Confidence            5554

The molecular function of this protein is uncertain.

>KOG0376|consensus

Probab=97.20  E-value=0.00047  Score=66.84  Aligned_cols=90  Identities=13%  Similarity=0.083  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  184 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~  184 (507)
                      ..|...+.-++|+.|+..|.++|..+|++...+-+.+.++++.+++..|+.-+.++++.+|....++..+|...+.++.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             HHHHHhhHHH
Q psy12000        185 RAAENQLKPI  194 (507)
Q Consensus       185 ~~A~~~l~~~  194 (507)
                      .+|...|+..
T Consensus        89 ~~A~~~l~~~   98 (476)
T KOG0376|consen   89 KKALLDLEKV   98 (476)
T ss_pred             HHHHHHHHHh
Confidence            9999888765

>KOG1585|consensus

Probab=97.20  E-value=0.0078  Score=53.29  Aligned_cols=102  Identities=17%  Similarity=0.045  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000         41 DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI  120 (507)
Q Consensus        41 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~  120 (507)
                      ..+..-+.++...++|++|..++.++.+-..+++.+|+.+..+                    -.-|.+......+.|+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKay--------------------EqaamLake~~klsEvv   91 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAY--------------------EQAAMLAKELSKLSEVV   91 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHH--------------------HHHHHHHHHHHHhHHHH
Confidence            4566778888889999999999998876555566777776544                    12344445566677777


Q ss_pred             HHHHHHHHhC-----CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        121 DIYKRILLDH-----KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       121 ~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      .+|+++....     |+....-...|--.....++++|+.+|++.+.
T Consensus        92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala  138 (308)
T KOG1585|consen   92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA  138 (308)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            7777765443     33333333333334455666777777776654

>KOG1586|consensus

Probab=97.19  E-value=0.016  Score=51.06  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=102.2

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCC----CC--ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-------
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLP----NP--PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-------   73 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-------   73 (507)
                      ++....|+.|-...++..|-..|-++-+..    ..  -...|.-.+.|| +.++.++|+.+++++++.....       
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aA  113 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAA  113 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            455667888888888888888888875532    11  224455566665 5559999999988775411110       


Q ss_pred             chHHHHHHhcCCh-hHHH---HHHHHHhh--------cHHH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----
Q psy12000         74 RLSFHLSHKLGDE-KSLM---EYHQKLED--------SLEE--QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----  134 (507)
Q Consensus        74 ~~~~~~~~~~~~~-~~~~---~~~~~l~~--------~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----  134 (507)
                      .....++..+..+ ....   .+.+.-.+        ...+  ++..|..-...|+|.+||.+|+++....-++.     
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence            0112222222111 1111   11111110        1111  55677777889999999999999987765543     


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        135 --ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       135 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                        +..+..|.|++-..+.-.+...+++....+|....
T Consensus       194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence              34456789999989988899999999999998764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.0056  Score=52.39  Aligned_cols=121  Identities=10%  Similarity=0.036  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCCCChh---hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000         24 QALGIYETLRHLPNPPED---TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  100 (507)
Q Consensus        24 ~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  100 (507)
                      +.+...++....+|.+.-   .-..+|..+...|++++|+.-++.+...+....+. .+                     
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk-~l---------------------  127 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLK-AL---------------------  127 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHH-HH---------------------
Confidence            455555555555555442   23456667777777777777766554322221000 00                     


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                       .-+.||.+...+|.+|+|+..+..+-.. ...+...-..|.++...|+-++|+..|++++..+++..
T Consensus       128 -~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         128 -AALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             -HHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence             0235666777777777777666553221 12233444567777777777777777777776654443

>KOG2300|consensus

Probab=97.15  E-value=0.29  Score=47.95  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             chhhHHHHHHHhhc--CHHHHHHHHHHHhcCCCCCh-h--hHHHHHHH-HHhhccHHHHHHHHHhCCC---Ccccc-c--
Q psy12000          7 LTDAWLGYCHFHLG--QYKQALGIYETLRHLPNPPE-D--TEFNIASC-YFYLGMYLQANQILEKVPP---SRAKT-R--   74 (507)
Q Consensus         7 ~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~~p~~~-~--~~~~la~~-~~~~g~~~eA~~~~~~~~~---~~~~~-~--   74 (507)
                      ...+.+|..+...|  +..++|++++..+.-.|... +  ....+|.+ +...++++-|...++++-.   .-+.. +  
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK   87 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK   87 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence            34556788888888  89999999999988877643 3  34556665 4557899999998887621   11111 1  


Q ss_pred             -----hHHHHHHhcC-ChhHHH-HHHHHHh---hcH----HHHHHHHHHHHHhhcHHHHHHHH
Q psy12000         75 -----LSFHLSHKLG-DEKSLM-EYHQKLE---DSL----EEQLCLASIHFLRCHYQEAIDIY  123 (507)
Q Consensus        75 -----~~~~~~~~~~-~~~~~~-~~~~~l~---~~~----~~~~~la~~~~~~g~~~~A~~~~  123 (507)
                           ++.++...+. ....+. .....+.   ..|    .-.+.|+.++....++..|++.+
T Consensus        88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen   88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence                 2223333222 111111 1111121   222    12678999999999999999873

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.12  E-value=0.00037  Score=42.01  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=28.1

Q ss_pred             hhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        428 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       428 ~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      .+++.+|.+|.++|++++|++.|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            356778999999999999999999999999864

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.07  E-value=0.00092  Score=40.21  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      .+++.+|.+|..+|++++|++.|+++++.+|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34566666666666666666666666666663

...

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.06  E-value=0.28  Score=46.18  Aligned_cols=128  Identities=17%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             HhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHh
Q psy12000         51 FYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLD  129 (507)
Q Consensus        51 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~  129 (507)
                      ..+|+++-|..++.|+.......           .+.....       ...-.++.|......+ ++++|+..++++.+.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~-----------~~~~~~~-------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSL-----------DPDMAEE-------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcC-----------CcHHHHH-------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            46788888888888775311000           0000000       0112678888888889 999999999998877


Q ss_pred             ----CC------ch----hHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH
Q psy12000        130 ----HK------DL----LALNVYGAMCYYKLDYYD---VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK  192 (507)
Q Consensus       130 ----~p------~~----~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~  192 (507)
                          .+      +.    ..++..++.+|...+.++   +|.+.++.+....|+.+..+.+.-.+..+.++.+.+...+.
T Consensus        66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~  145 (278)
T PF08631_consen   66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM  145 (278)
T ss_pred             HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence                21      11    246677899999877654   56666666777788877765555445455677788888777


Q ss_pred             HHHH
Q psy12000        193 PILV  196 (507)
Q Consensus       193 ~~~~  196 (507)
                      .++.
T Consensus       146 ~mi~  149 (278)
T PF08631_consen  146 RMIR  149 (278)
T ss_pred             HHHH
Confidence            7653

It is also involved in sporulation [].

>KOG2610|consensus

Probab=97.06  E-value=0.08  Score=49.28  Aligned_cols=97  Identities=8%  Similarity=-0.080  Sum_probs=59.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ  220 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  220 (507)
                      +-+....|+..+|-...+++++..|.+..++...-..++..|+...-...+++++. .+....|....+.-.++..+...
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHh
Confidence            44555667777777777777777777777666555556666665555555554321 11112233344455566777788


Q ss_pred             ccHHHHHHHHHhcCCCCh
Q psy12000        221 EEHQEAFDLIKNLEPSVP  238 (507)
Q Consensus       221 ~~~~~A~~~l~~~~~~~~  238 (507)
                      |-|++|.+..++....++
T Consensus       189 g~y~dAEk~A~ralqiN~  206 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINR  206 (491)
T ss_pred             ccchhHHHHHHhhccCCC
Confidence            888888887776544444

>KOG2610|consensus

Probab=97.01  E-value=0.01  Score=54.93  Aligned_cols=146  Identities=14%  Similarity=0.110  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHhhcHHHHHH---HHHHHHHhhcHHHHHHHHHHHHHh-CCchh---HHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         86 EKSLMEYHQKLEDSLEEQLC---LASIHFLRCHYQEAIDIYKRILLD-HKDLL---ALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~---la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      .++..+..+.|.+.|.+.+.   .-.+++-.|+.+.-...+++++.. +|+.|   -+.-..+.+....|-|++|.+..+
T Consensus       120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~  199 (491)
T KOG2610|consen  120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD  199 (491)
T ss_pred             cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence            45556667778888888554   345778899999999999999988 77764   445567788999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      +++++||.+.-+...++.++-..++++++.+...+-.. .+....-...-.|...+..++..++|+.|++++..
T Consensus       200 ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  200 RALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            99999999999888888888888888888765543210 00000000122456678889999999999998863

>KOG1585|consensus

Probab=96.85  E-value=0.21  Score=44.53  Aligned_cols=165  Identities=10%  Similarity=-0.034  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      ++...+.+|-...+|++|..++.++.+-..++.      .++-..|.+.-....+.|+..+++++..          ++.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~----------lY~  102 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------LYV  102 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHH
Confidence            444567888889999999999999986544443      2233455556667777888887777632          111


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHH
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~  155 (507)
                      .-|..+.+..+.           ..|.-.....++++|+++|++++..-..      -.+.+...+.++.+..++++|-.
T Consensus       103 E~GspdtAAmal-----------eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  103 ECGSPDTAAMAL-----------EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT  171 (308)
T ss_pred             HhCCcchHHHHH-----------HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence            122222222221           1222334557888999999988765421      13455567788889999998877


Q ss_pred             HHHHHH----hcC--CCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000        156 QVAMYL----AQK--PTSRIALNLKACNTYKLFTSRAAENQLKP  193 (507)
Q Consensus       156 ~~~~~l----~~~--p~~~~a~~~~a~~~~~~~~~~~A~~~l~~  193 (507)
                      .+.+-.    +.+  |+-..++.....+++...++..|+..+..
T Consensus       172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~  215 (308)
T KOG1585|consen  172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD  215 (308)
T ss_pred             HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            766532    122  22111222222233344467777766654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.78  E-value=0.037  Score=46.42  Aligned_cols=59  Identities=14%  Similarity=-0.054  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      ...++..+...|++++|+..+++++..+|.+..++..+-.++..+|+..+|++.|+++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2471|consensus

Probab=96.78  E-value=0.0028  Score=61.42  Aligned_cols=136  Identities=13%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHH-hcCCCC--------ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETL-RHLPNP--------PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL   75 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~   75 (507)
                      ++...+.-+..+|..|+|.+|.+.+... +...|.        ..-.|.++|.+++++|.|.-+..+|.++..+..    
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c----  314 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC----  314 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH----
Confidence            3445566789999999999999988654 222333        224678999999999999999999998853100    


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000         76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  148 (507)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  148 (507)
                       -.+...+ ......+.  .-.+.-+..++.|..|...|+.-.|.++|.++......+|.+|..+|.|.+...
T Consensus       315 -~qL~~g~-~~~~~~tl--s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  315 -SQLRNGL-KPAKTFTL--SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             -HHHhccC-CCCcceeh--hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence             0000000 00000000  000112337899999999999999999999999999999999999999988654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.72  E-value=0.014  Score=44.19  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000        119 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus       119 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      .+..+++.+..+|++.++.+.+|..++..|++++|++.+-.+++.+|+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4567788999999999999999999999999999999999999998876

>PRK10941 hypothetical protein; Provisional

Probab=96.69  E-value=0.0062  Score=56.37  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      +..++...++++.|+.+.+.++...|+++.-.-..|.+|.++|.+..|...++.+++.-|++|.+..++..+
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            446777889999999999999999999999888899999999999999999999999999999997766654

>KOG0985|consensus

Probab=96.67  E-value=1.2  Score=47.76  Aligned_cols=345  Identities=15%  Similarity=0.136  Sum_probs=168.3

Q ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHhCC-C-Cccc-cc----hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000         39 PEDTEFNIASCYFYLGMYLQANQILEKVP-P-SRAK-TR----LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF  111 (507)
Q Consensus        39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~-~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~  111 (507)
                      +|+.-.-....++..+-..+-++.++++. + +... ++    +++.-+.+. +..+..+|..+|....  --..|.+-.
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~~ia~iai 1059 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--APDIAEIAI 1059 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--chhHHHHHh
Confidence            44545556667888888999999999874 2 2111 11    233333333 5666777777775321  113455666


Q ss_pred             HhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000        112 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL  191 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l  191 (507)
                      ..+-|++|..+|++.   +-+ ..+.   -.+--..+..|.|.++.+++     +.+..|..+|..-++.|...+|++.+
T Consensus      1060 ~~~LyEEAF~ifkkf---~~n-~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF---DMN-VSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred             hhhHHHHHHHHHHHh---ccc-HHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHH
Confidence            667778887777762   111 1111   01112334455555544443     22223333344444555555555433


Q ss_pred             HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHH--HHHHHHHHhhhccCcHHHHHHHHHHHH
Q psy12000        192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI--LKAVVQVTIGQDTGSREMVKAAQALFQ  269 (507)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~  269 (507)
                      -+          ...|..+.....+-.+.|+|++-+..+....++....++  ..-.++...++.       .+-+++..
T Consensus      1128 ik----------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl-------~elE~fi~ 1190 (1666)
T KOG0985|consen 1128 IK----------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL-------TELEEFIA 1190 (1666)
T ss_pred             Hh----------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH-------HHHHHHhc
Confidence            22          223455666677777778888777766533111110111  111122233222       22222211


Q ss_pred             HhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        270 LVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       270 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                        +.+  . ..   ....|.-.+..|.|+.|--+|..+..        +..|+..+..+|+|..|...-+++-+..    
T Consensus      1191 --gpN--~-A~---i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~TLV~LgeyQ~AVD~aRKAns~k---- 1250 (1666)
T KOG0985|consen 1191 --GPN--V-AN---IQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLASTLVYLGEYQGAVDAARKANSTK---- 1250 (1666)
T ss_pred             --CCC--c-hh---HHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHhhhccchh----
Confidence              100  0 01   12356667777788877666655421        3457888888888888888777763221    


Q ss_pred             hhhhhhhcccC--ccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh
Q psy12000        350 YVYISHLTKCS--PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL  427 (507)
Q Consensus       350 ~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~  427 (507)
                       +|..   -|+  ...+.++.|    +--|-.-       .+.  .+.--.+...|..+|.|++-|..++.++-...-..
T Consensus      1251 -tWK~---VcfaCvd~~EFrlA----QiCGL~i-------ivh--adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1251 -TWKE---VCFACVDKEEFRLA----QICGLNI-------IVH--ADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred             -HHHH---HHHHHhchhhhhHH----HhcCceE-------EEe--hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence             1111   011  111122211    1100000       000  00001111233345788888888888877666666


Q ss_pred             hhHHHHHhhccccccchhHHHHHHHH
Q psy12000        428 ALNVYGAMCYYKLDYYDVSQEQVAMY  453 (507)
Q Consensus       428 ~~~~~la~~y~~~g~~~~A~~~~~~~  453 (507)
                      .....+|..|.|- ++++-.+.++-+
T Consensus      1314 gmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            6666677666554 355555555443

>KOG0551|consensus

Probab=96.65  E-value=0.017  Score=53.52  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHH
Q psy12000         42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI  120 (507)
Q Consensus        42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~  120 (507)
                      -+---|.-|++.++|..|+..|.+.+....... +..                       -.+.+.|.+.+..|+|..|+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna-----------------------vLY~NRAAa~~~l~NyRs~l  139 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA-----------------------VLYTNRAAAQLYLGNYRSAL  139 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH-----------------------HHHhhHHHHHHHHHHHHHHH
Confidence            344578889999999999999877643211110 000                       01557788888999999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000        121 DIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus       121 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                      .-..+++..+|.+..+++.-|.|++.+.+++.|+..++..+..+-....+.
T Consensus       140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999999999999999999999999877766555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.65  E-value=0.57  Score=45.72  Aligned_cols=142  Identities=15%  Similarity=-0.037  Sum_probs=82.9

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcC----CCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCc------hhhh
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYT----SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKN------DYVY  352 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~  352 (507)
                      .+..++.+..+.|+++-|...+..+....+    ..+.+.+..+..+...|+..+|+..++..++.....      ....
T Consensus       148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~  227 (352)
T PF02259_consen  148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL  227 (352)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            345678889999999999999988876542    145667778999999999999999998876521110      0001


Q ss_pred             hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH------hHhhHHHHHHHHHHHhhcCCch
Q psy12000        353 ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF------LRCHYQEAIDIYKRILLDHKDL  426 (507)
Q Consensus       353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~------~~~~~~~Ai~~~~~~l~~~p~~  426 (507)
                      ..++......          ...........   ...++   ..+.+|....      ..+.+++++..|+++.+.+|..
T Consensus       228 ~~~~~~~~~~----------~~~~~~~~~~~---~~~a~---~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  228 KSGLLESLEV----------ISSTNLDKESK---ELKAK---AFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             hhcccccccc----------ccccchhhhhH---HHHHH---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence            0000000000          00000000000   00000   0111121111      2267899999999999999999


Q ss_pred             hhhHHHHHhhcccc
Q psy12000        427 LALNVYGAMCYYKL  440 (507)
Q Consensus       427 ~~~~~~la~~y~~~  440 (507)
                      ...++..|..+.++
T Consensus       292 ~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  292 EKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777766654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.036  Score=47.62  Aligned_cols=91  Identities=14%  Similarity=0.016  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      .+.+|..+...|++++|+..++.++....|.   .-+..+||.+.+.+|++|+|+..++......-.. ...-++|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-IVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-HHHHHhhhHHH
Confidence            5678999999999999999999999665543   3456789999999999999999887654322111 12334555555


Q ss_pred             hccChHHHHHhhHHH
Q psy12000        180 KLFTSRAAENQLKPI  194 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~  194 (507)
                      ..|+.++|...+++.
T Consensus       171 ~kg~k~~Ar~ay~kA  185 (207)
T COG2976         171 AKGDKQEARAAYEKA  185 (207)
T ss_pred             HcCchHHHHHHHHHH
Confidence            555555555555443

>KOG1308|consensus

Probab=96.58  E-value=0.0017  Score=60.30  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=75.9

Q ss_pred             HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000        403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  482 (507)
Q Consensus       403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~  482 (507)
                      .+..|.+++||+.|.++++.+|....++...|.++.++++...|+..+..+++++||.+..+.+++..+=.+.+...+..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            34458999999999999999999999999999999999999999999999999999999999988888777777666666


Q ss_pred             HHHHHHH
Q psy12000        483 QLKPILV  489 (507)
Q Consensus       483 ~~~~~~~  489 (507)
                      +|....+
T Consensus       204 dl~~a~k  210 (377)
T KOG1308|consen  204 DLALACK  210 (377)
T ss_pred             HHHHHHh
Confidence            5555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.55  E-value=0.042  Score=46.09  Aligned_cols=89  Identities=17%  Similarity=0.007  Sum_probs=62.9

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCC-----c-----------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHK-----D-----------------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p-----~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      .|......|+.+.++..+++++....     +                 ...+...++..+...|++++|+..+++++..
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            45555667788889999999887652     1                 1134556778888999999999999999999


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      +|.+..++..+-.++...|+...|...+..+
T Consensus        92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   92 DPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            9999887776666666777777776666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3364|consensus

Probab=96.52  E-value=0.016  Score=46.33  Aligned_cols=75  Identities=31%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             HHHHHHHHHH---hhcHHHHHHHHHHHHH-hCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        103 QLCLASIHFL---RCHYQEAIDIYKRILL-DHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       103 ~~~la~~~~~---~g~~~~A~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      .+++|..+..   ..+..+-+.+++.+++ ..|+ ..+..|.||..+++.|+|++|+.+++.++...|++..+..++-.+
T Consensus        35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            6778877765   4566789999999997 5554 457788999999999999999999999999999999887655443

>KOG4507|consensus

Probab=96.48  E-value=0.28  Score=49.23  Aligned_cols=59  Identities=12%  Similarity=-0.056  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000        407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  465 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~  465 (507)
                      |-.-+|-..+.+++......|-.++-+|..|.-+.+.++|++.+++++++.|+++.+-+
T Consensus       656 ~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~  714 (886)
T KOG4507|consen  656 GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN  714 (886)
T ss_pred             hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence            44566777777777766555666677788888888888888888888888888877644

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.40  E-value=0.037  Score=46.27  Aligned_cols=82  Identities=12%  Similarity=0.061  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+..+-...++.+++..++..+--..|..+++-..-|.+++..|+|.+|+.+|+.+....|..+.+.-+++++++.++
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            44555666677899999999999999999999999999999999999999999999999999999988888888887776


Q ss_pred             Ch
Q psy12000        183 TS  184 (507)
Q Consensus       183 ~~  184 (507)
                      +.
T Consensus        93 D~   94 (160)
T PF09613_consen   93 DP   94 (160)
T ss_pred             Ch
Confidence            64

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.38  E-value=0.0057  Score=37.29  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRIL  127 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l  127 (507)
                      ..||.+|..+|+|++|+++|++++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555555555555555555533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.37  E-value=0.0059  Score=37.22  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCCc
Q psy12000        136 LNVYGAMCYYKLDYYDVSQEQVAMYL--AQKPTS  167 (507)
Q Consensus       136 ~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~  167 (507)
                      ++.+||.+|..+|+|++|+++|++++  ..+|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            03579999999999999999999955  445543

>PRK10941 hypothetical protein; Provisional

Probab=96.24  E-value=0.033  Score=51.56  Aligned_cols=74  Identities=15%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      .-++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|..-++.++..-|+++.+..++..
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            34677899999999999999999999999999988899999999999999999999999999999987665443

>KOG1308|consensus

Probab=96.19  E-value=0.0018  Score=60.02  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccCh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  184 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~  184 (507)
                      .-+.-.+..|.+++|++.|..+|..+|....++...+.++++++++..|+.-+..++.++|+....+.+.+..+..+|++
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34455667899999999999999999999999999999999999999999999999999999998887777777777777


Q ss_pred             HHHHHhhHHH
Q psy12000        185 RAAENQLKPI  194 (507)
Q Consensus       185 ~~A~~~l~~~  194 (507)
                      ..|...+...
T Consensus       199 e~aa~dl~~a  208 (377)
T KOG1308|consen  199 EEAAHDLALA  208 (377)
T ss_pred             HHHHHHHHHH
Confidence            7776555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.15  E-value=0.16  Score=47.94  Aligned_cols=122  Identities=11%  Similarity=-0.033  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      .+.......+..+.|..+|.++....+-...+|...|.+-+. .++.+.|.++|+..++..|.+...+......+...++
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence            344555566668888888888886666677888888888666 5566668999998888888888766655556666777


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCCh--hHhHHHHHHHHHhhccHHHHHHHH
Q psy12000        184 SRAAENQLKPILVSILPPLIDVI--PESRLNLVIYHLKQEEHQEAFDLI  230 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~l  230 (507)
                      .+.|...|+..+    ..+....  ...|......=.+.|+.+....+.
T Consensus        86 ~~~aR~lfer~i----~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   86 INNARALFERAI----SSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             HHHHHHHHHHHC----CTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777653    2222211  123444444444455555554444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.12  E-value=2.4  Score=45.00  Aligned_cols=54  Identities=9%  Similarity=0.054  Sum_probs=42.5

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhc---CC------CchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYY---TS------DDSFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~---~~------~~~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                      .++.+.+-.+++.+|...++.+....   |.      .+..++..|..+-..|+.+.|+..|.
T Consensus       366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            46788888999999998887665432   22      24566778888888999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1550|consensus

Probab=96.07  E-value=2.1  Score=44.67  Aligned_cols=288  Identities=13%  Similarity=0.108  Sum_probs=160.0

Q ss_pred             cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHH
Q psy12000        115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL-----DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  189 (507)
Q Consensus       115 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~  189 (507)
                      +...|..+|+.+-..  .+..+.+.+|.||..-     .+.++|+.+|+.+...                    ++.+..
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~--------------------~~~~a~  284 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES--------------------FKKAAT  284 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH--------------------HHHHHh
Confidence            456788888876544  3566677788888753     5788888888877543                    000000


Q ss_pred             hhHHHHHhhCCCCCCChhHhHHHHHHHHHhh----c-cHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000        190 QLKPILVSILPPLIDVIPESRLNLVIYHLKQ----E-EHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKA  263 (507)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  263 (507)
                             +       ..+.+...+|.+|.+-    . ++..|...+.+. .-.+|......|..+..-.    ...++++
T Consensus       285 -------~-------~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~----~~~d~~~  346 (552)
T KOG1550|consen  285 -------K-------GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT----KERDYRR  346 (552)
T ss_pred             -------h-------cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC----ccccHHH
Confidence                   0       0223455666666652    2 677787777654 4455655555555544322    2345678


Q ss_pred             HHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh-CCHHHHHHHH
Q psy12000        264 AQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL-GQYKEAEEMF  338 (507)
Q Consensus       264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~  338 (507)
                      |.++|......    ..+.+..++|.||..    ..+...|..+++++....  .+.+.+.++..+... +.++.+...+
T Consensus       347 A~~yy~~Aa~~----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~  420 (552)
T KOG1550|consen  347 AFEYYSLAAKA----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY  420 (552)
T ss_pred             HHHHHHHHHHc----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence            88888755432    235566678888765    358899999999988765  333445566555443 7888887777


Q ss_pred             HhhcccCCCch---hhhhhhhcccCcc----chhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH----h
Q psy12000        339 LLVQNEGLKND---YVYISHLTKCSPS----RAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR----C  407 (507)
Q Consensus       339 ~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~----~  407 (507)
                      ...........   ..++.........    ......++..+.+....           ........++..++..    .
T Consensus       421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence            55432221111   1111100001100    11222222222221110           1112223344444432    2


Q ss_pred             hHHHHHHHHHHHhhcCCchhhhHHHHHhhccc-ccc--chhHHHHHHHHHhcCCCchh
Q psy12000        408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK-LDY--YDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~-~g~--~~~A~~~~~~~l~~~P~~~~  462 (507)
                      +++.|...|.++....   ....+++|..+.. .|-  ...|...++++.+.+++...
T Consensus       490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~  544 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYL  544 (552)
T ss_pred             ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhh
Confidence            6888999998887766   6666777776652 222  57888888888776655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.98  E-value=0.3  Score=46.02  Aligned_cols=129  Identities=9%  Similarity=-0.071  Sum_probs=77.9

Q ss_pred             HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-hccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFY-LGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      ...-..+..+.|..+|.++++..+....+|...|.+-+. .++.+-|..+|+.+.+..+.                    
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--------------------   68 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--------------------   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--------------------
T ss_pred             HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--------------------
Confidence            334445567888888888876666667778777877666 45545477777765321111                    


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                            ++.-++.....+...|+.+.|..+|++++..-|...   .++-.....-.+.|+.+...++.+++....|+..
T Consensus        69 ------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   69 ------DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             -------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             ------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence                  111122333445566778888888888877766543   3455555555667788888888777777777644

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.94  E-value=0.87  Score=38.53  Aligned_cols=142  Identities=10%  Similarity=0.014  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHHHHh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL--LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI----ALNLKA  175 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----a~~~~a  175 (507)
                      +.+.-+.-....+..++|+..|..+-+.+-..  .-+....|.+....|+...|+..|..+-...|--..    +-..-+
T Consensus        60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            34455555667788999999998887665332  345667788889999999999999998765543222    222224


Q ss_pred             hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc--CCCChHHHHHHHHH
Q psy12000        176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL--EPSVPQEYILKAVV  247 (507)
Q Consensus       176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~  247 (507)
                      .++.-.|.|++-....+.+    ..+-.+....++..||..-++.|++.+|...|..+  +...|.....++.+
T Consensus       140 ~lLvD~gsy~dV~srvepL----a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~  209 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPL----AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHhccccHHHHHHHhhhc----cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence            4445567777776655543    12334455568888999999999999999999876  33344443334433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.94  E-value=1.5  Score=41.25  Aligned_cols=118  Identities=15%  Similarity=0.039  Sum_probs=72.7

Q ss_pred             HHhhcHHHHHHHHHHHHHh----CCch----hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc-------CCCcHH-----
Q psy12000        111 FLRCHYQEAIDIYKRILLD----HKDL----LALNVYGAMCYYKLD-YYDVSQEQVAMYLAQ-------KPTSRI-----  169 (507)
Q Consensus       111 ~~~g~~~~A~~~~~~~l~~----~p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~-------~p~~~~-----  169 (507)
                      -.+|+++.|..+|.++-..    +|+.    ....|+.|...+..+ +++.|...++++.+.       +...+.     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3679999999999987544    3443    357788999999999 999999999988654       222222     


Q ss_pred             --HHHHHhhhhhhccChH---HHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        170 --ALNLKACNTYKLFTSR---AAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       170 --a~~~~a~~~~~~~~~~---~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                        .+..++..+...+..+   .|...++.+.     ..-+..+..+..-..+..+.++.+++.+.+.++
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-----~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m  147 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLE-----SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM  147 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-----HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence              2334455555555543   3333333332     223344555544444455567777777766654

It is also involved in sporulation [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.86  E-value=3.1  Score=44.30  Aligned_cols=188  Identities=14%  Similarity=0.090  Sum_probs=85.3

Q ss_pred             chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH-HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhH
Q psy12000        132 DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL-KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESR  210 (507)
Q Consensus       132 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~-~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~  210 (507)
                      +..+.+.+.+..+...|..++|+++.-.+  .+|...-...- .+.-.+..++..--....+.    +-.+....+|..-
T Consensus       345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~----lP~~~l~~~P~Lv  418 (894)
T COG2909         345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKA----LPAELLASTPRLV  418 (894)
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHh----CCHHHHhhCchHH
Confidence            34677788888888899999998764322  23322211100 00001111111111111111    0001111234444


Q ss_pred             HHHHHHHHhhccHHHHHHHHHhcC-----CCChHH-------HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccc
Q psy12000        211 LNLVIYHLKQEEHQEAFDLIKNLE-----PSVPQE-------YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSEC  278 (507)
Q Consensus       211 ~~l~~~~~~~~~~~~A~~~l~~~~-----~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~  278 (507)
                      +..+.....+.++++|-.++.++.     |..+..       ..+++.+....|+...+..   -|.....+++......
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~---lar~al~~L~~~~~~~  495 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAED---LARLALVQLPEAAYRS  495 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHhcccccchh
Confidence            555666777889999988776541     111111       1233444433333322222   2222222232221111


Q ss_pred             cchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------hHHHHHHHHHHhhC
Q psy12000        279 DTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------SFNFNFAQAKCALG  329 (507)
Q Consensus       279 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------~~~~~lg~~~~~~g  329 (507)
                       .+.+...+|.+..-.|++++|..+.+.+.+......      .+.+-.+.++..+|
T Consensus       496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence             122233467777778888888877766654432222      22233456666777

>smart00028 TPR Tetratricopeptide repeats

Probab=95.84  E-value=0.0081  Score=34.88  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             hHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        429 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       429 ~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      .+..+|.++..+|++++|+..++.+++.+|++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            45667888888888888888888888887753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.80  E-value=0.017  Score=33.44  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        136 LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       136 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      ++..+|.++..+|++++|+..++++++.+|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455666666666666666666666655553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1550|consensus

Probab=95.80  E-value=2  Score=44.77  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             hhHHHHHHHh-----hcCHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhhc-----cHHHHHHHHHhCCCCcccc
Q psy12000          9 DAWLGYCHFH-----LGQYKQALGIYETLRHL-----PNPPEDTEFNIASCYFYLG-----MYLQANQILEKVPPSRAKT   73 (507)
Q Consensus         9 ~~~lg~~~~~-----~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~~~~~~~~~~   73 (507)
                      ...+|.+|+.     ..|.+.|+.+|+.+.+.     .-..+.+.+.+|.+|....     +++.|..++.++.....  
T Consensus       247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--  324 (552)
T KOG1550|consen  247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--  324 (552)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--
Confidence            3446666664     37899999999988761     1113456778888888753     56667777766543221  


Q ss_pred             chHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----
Q psy12000         74 RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----  146 (507)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----  146 (507)
                                                +...+.+|.++....   ++..|.++|..+....  +..+.+.+|.||..    
T Consensus       325 --------------------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  325 --------------------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGV  376 (552)
T ss_pred             --------------------------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCc
Confidence                                      222556666666544   6789999999886544  56778888888875    


Q ss_pred             cCCHHHHHHHHHHHHhcC
Q psy12000        147 LDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       147 ~g~~~~A~~~~~~~l~~~  164 (507)
                      .-+...|..+++++...+
T Consensus       377 ~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             CCCHHHHHHHHHHHHHcc
Confidence            236788888888887776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.64  E-value=1.1  Score=43.61  Aligned_cols=141  Identities=12%  Similarity=-0.009  Sum_probs=87.3

Q ss_pred             HHHHHHHHHH---hhcHHHHHHHHHHH-HHhCCchhHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        103 QLCLASIHFL---RCHYQEAIDIYKRI-LLDHKDLLALNVYGAMCYYK---------LDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       103 ~~~la~~~~~---~g~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      ....|.++..   .|+.++|+.++..+ ....+.+++++..+|.+|-.         ....++|+..|.+....+|+.-.
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~  261 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS  261 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence            5567777777   89999999999994 45556788888888887732         33588999999999999998877


Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHH---HhhCCCCCCC-hhHhHH---HHHHHHHhhccHHHHHHHHHhcCCCChHHHH
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPIL---VSILPPLIDV-IPESRL---NLVIYHLKQEEHQEAFDLIKNLEPSVPQEYI  242 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~-~~~~~~---~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~  242 (507)
                      +.|+...+... |........+.++.   ...+...... ...-+.   .++-+.+-.|++++|...++++....|..|.
T Consensus       262 GIN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  262 GINAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             hHHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            77755444333 32222221222211   0000000000 011222   3444566688999999888887666666665


Q ss_pred             HH
Q psy12000        243 LK  244 (507)
Q Consensus       243 ~~  244 (507)
                      +.
T Consensus       341 l~  342 (374)
T PF13281_consen  341 LE  342 (374)
T ss_pred             HH
Confidence            44

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.60  E-value=2.6  Score=41.40  Aligned_cols=51  Identities=8%  Similarity=0.014  Sum_probs=44.4

Q ss_pred             HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHH
Q psy12000        401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  452 (507)
Q Consensus       401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~  452 (507)
                      .-.|..|+|.+++.+-.-+.+..| ++.++-.+|+|.+...+|++|-+++..
T Consensus       470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            344567999999999999999999 888888899999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538|consensus

Probab=95.51  E-value=1.9  Score=44.00  Aligned_cols=56  Identities=16%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcC--------------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHL--------------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPP   68 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~   68 (507)
                      +|......=+++-|.+.|-++-..              ....|+ -..+|.+....|+|.||.+.|.+...
T Consensus       591 LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~  660 (1081)
T KOG1538|consen  591 LAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGH  660 (1081)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCc
Confidence            455555666666776666654321              112122 24788889999999999999988753

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.45  E-value=0.35  Score=39.83  Aligned_cols=76  Identities=11%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      ..-...++.+++..++..+--..|+.+++...-|.+++..|+|++|+.+|+.+....|..+.+.-+++.+++-+|+
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            3334488999999999998888999999999999999999999999999999998888888877778888776655

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4814|consensus

Probab=95.44  E-value=0.12  Score=52.29  Aligned_cols=93  Identities=22%  Similarity=0.107  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +.+-|.-+++.++|..+++.|...+...|.      +......++.||..+.|.|.|.++++++-+.+|.++..-....+
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            557788899999999999999999988774      34566788999999999999999999999999999987666666


Q ss_pred             hhhhccChHHHHHhhHHHH
Q psy12000        177 NTYKLFTSRAAENQLKPIL  195 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~  195 (507)
                      +....++.++|...+..+.
T Consensus       437 ~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             HHHHhcchHHHHHHHHHHH
Confidence            6677888888887777654

>KOG1538|consensus

Probab=95.22  E-value=4.3  Score=41.66  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=47.3

Q ss_pred             HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000         14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH   93 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (507)
                      ++|...|.+++|...-  ++-.-.   .-|-.+|......=+++-|.+.|.++.+.+.     +.+         +.+..
T Consensus       564 ~q~Ieag~f~ea~~ia--clgVv~---~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~-----L~l---------i~EL~  624 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIA--CLGVTD---TDWRELAMEALEALDFETARKAYIRVRDLRY-----LEL---------ISELE  624 (1081)
T ss_pred             hhhhhccchhhhhccc--ccceec---chHHHHHHHHHhhhhhHHHHHHHHHHhccHH-----HHH---------HHHHH
Confidence            3455666666654431  111111   2355666666666666666666655533211     000         00011


Q ss_pred             HHHh-hcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy12000         94 QKLE-DSLEEQLCLASIHFLRCHYQEAIDIYKR  125 (507)
Q Consensus        94 ~~l~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  125 (507)
                      +.-+ ....+-..+|.+..-+|+|.||..+|.+
T Consensus       625 ~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  625 ERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence            1101 1112355678888889999999988876

>KOG2041|consensus

Probab=95.11  E-value=4.8  Score=41.67  Aligned_cols=180  Identities=10%  Similarity=-0.069  Sum_probs=87.4

Q ss_pred             hcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccc---cchHHHHHHh------cCChhHHHHHHHHHhhcHHHH
Q psy12000         33 RHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAK---TRLSFHLSHK------LGDEKSLMEYHQKLEDSLEEQ  103 (507)
Q Consensus        33 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~  103 (507)
                      ++.+| +++.|-.+|......-.++-|+..|-+..+.+--   .++.-.....      .+..+..+++.+..-+  .+.
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld--~dr  762 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD--ADR  762 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc--cch
Confidence            34466 5689999999998888899998888776542211   0000000000      0001111111110000  001


Q ss_pred             HHHH-HHHHHhhcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        104 LCLA-SIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       104 ~~la-~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      --|| .++.+.|++-.-.++++..-....|  -.+++.++|..+..+-.|++|.++|...-...        ....++++
T Consensus       763 rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~  834 (1189)
T KOG2041|consen  763 RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYR  834 (1189)
T ss_pred             hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHH
Confidence            1122 2333445555555444432211111  24577778888888888888888877642111        11233444


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      ...+++-+..-.     .+++.    .+..-.+|..+.+.|.-++|.+.+-+
T Consensus       835 le~f~~LE~la~-----~Lpe~----s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  835 LELFGELEVLAR-----TLPED----SELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHhhhhHHHHHH-----hcCcc----cchHHHHHHHHHhhchHHHHHHHHHh
Confidence            444444332211     12222    22333567777778888888776644

>KOG3824|consensus

Probab=94.97  E-value=0.073  Score=48.88  Aligned_cols=72  Identities=13%  Similarity=-0.027  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      +..|.-..+.|+.++|..+|+.++...|++++++...|......++.-+|-.+|-+++..+|.+..|+...+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            345666788999999999999999999999999999999999999999999999999999999998865443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.94  E-value=0.13  Score=43.04  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                      ..-++++..+|++.+|+.+|+.+....|..+...-.+++|++.+|+.
T Consensus        48 ~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   48 LFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            33455555556666666666665555565555555556666555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.91  E-value=0.076  Score=40.17  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc
Q psy12000        412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~  460 (507)
                      .+..+++.+..+|+++...+.+|.++...|++++|++.+-.+++.+|+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556778888999999999999999999999999999999999988876

>KOG0985|consensus

Probab=94.84  E-value=7.3  Score=42.34  Aligned_cols=184  Identities=16%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             cCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh--
Q psy12000         20 GQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE--   97 (507)
Q Consensus        20 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--   97 (507)
                      ++.+.|.++-+++     +.+++|..+|......|...+|++.|-++.+..... -....+...+..+++..+....+  
T Consensus      1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~-eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYL-EVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHH-HHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            5556666655554     234566667776666777777776666654311100 01112222222222222221111  


Q ss_pred             -----------------------------hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000         98 -----------------------------DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  148 (507)
Q Consensus        98 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  148 (507)
                                                   .+..+.-..|.-.+..|.|+.|.-+|..+        .-+..+|.....+|
T Consensus      1163 ~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1163 VREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLG 1234 (1666)
T ss_pred             hcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHH
Confidence                                         11122445667777777777777666543        33456777888888


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHH--hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHH
Q psy12000        149 YYDVSQEQVAMYLAQKPTSRIALNLK--ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEA  226 (507)
Q Consensus       149 ~~~~A~~~~~~~l~~~p~~~~a~~~~--a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  226 (507)
                      +|+.|....+++     ++...|...  ||+.  .+.+.-|         ++..-..-.+.+-.-.|...|...|-+++-
T Consensus      1235 eyQ~AVD~aRKA-----ns~ktWK~VcfaCvd--~~EFrlA---------QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA-----NSTKTWKEVCFACVD--KEEFRLA---------QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred             HHHHHHHHhhhc-----cchhHHHHHHHHHhc--hhhhhHH---------HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence            888888776654     222222211  2321  1122222         122222223445556788889999999999


Q ss_pred             HHHHHhc
Q psy12000        227 FDLIKNL  233 (507)
Q Consensus       227 ~~~l~~~  233 (507)
                      +.+++..
T Consensus      1299 Isl~Ea~ 1305 (1666)
T KOG0985|consen 1299 ISLLEAG 1305 (1666)
T ss_pred             HHHHHhh
Confidence            8888754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.82  E-value=4.3  Score=39.55  Aligned_cols=25  Identities=8%  Similarity=0.037  Sum_probs=15.4

Q ss_pred             HHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000        287 MASSFFLLRSFKDVILYLSSIKSYY  311 (507)
Q Consensus       287 la~~~~~~~~~~~Ai~~~~~~~~~~  311 (507)
                      ++.+....|++++|++.++++....
T Consensus       311 l~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  311 LLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            4555566666666666666665553

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.65  E-value=2.4  Score=35.96  Aligned_cols=42  Identities=12%  Similarity=0.078  Sum_probs=25.3

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK  325 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~  325 (507)
                      ++..||..-++.|++.+|...|..+.. +...|....+.+.+.
T Consensus       169 ArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         169 AREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            455677777777888888877777765 223333334444443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.63  E-value=0.57  Score=45.72  Aligned_cols=37  Identities=27%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             HHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000         31 TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVP   67 (507)
Q Consensus        31 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~   67 (507)
                      .+++.+|.+.+.+..++.++..+|+.+.|.+.++++.
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999988863

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.55  E-value=9.2  Score=42.20  Aligned_cols=98  Identities=16%  Similarity=0.055  Sum_probs=68.4

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhh-------ccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPE---DTEFNIASCYFYL-------GMYLQANQILEKVPPSRAKTRLSFHLS   80 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~-------g~~~eA~~~~~~~~~~~~~~~~~~~~~   80 (507)
                      .+..+......|+.|+..|+++-...|.-.   ++.+..|.....+       ..+++|+..|++...++          
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  549 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV----------  549 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----------
Confidence            356778888999999999999999998765   4566666554332       12333333333322111          


Q ss_pred             HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000         81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA  135 (507)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  135 (507)
                                       ..|-.++..|.+|-..|+|+|=+++|.-+++..|.+|.
T Consensus       550 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        550 -----------------GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             -----------------CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence                             11334778899999999999999999999999987764

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.52  E-value=7.7  Score=41.16  Aligned_cols=65  Identities=9%  Similarity=0.005  Sum_probs=47.5

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhc---CCc------hhhhHHHHHhhccccccchhHHHHHH--------HHHhcCCCch
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLD---HKD------LLALNVYGAMCYYKLDYYDVSQEQVA--------MYLAQKPTSR  461 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~---~p~------~~~~~~~la~~y~~~g~~~~A~~~~~--------~~l~~~P~~~  461 (507)
                      .++..+..+++..|....+.+...   .|.      .+.+++..|+.+...|+.+.|+..|.        .+....|.+.
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            345666678888888888877642   333      35577788999999999999999997        5556666655


Q ss_pred             hh
Q psy12000        462 IA  463 (507)
Q Consensus       462 ~a  463 (507)
                      ..
T Consensus       447 l~  448 (608)
T PF10345_consen  447 LY  448 (608)
T ss_pred             HH
Confidence            43

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.37  E-value=2.1  Score=41.82  Aligned_cols=37  Identities=8%  Similarity=-0.007  Sum_probs=33.2

Q ss_pred             HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000        125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus       125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      .++..+|.+.+++..++.++..+|+.+.|-+++++++
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999886

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0890|consensus

Probab=94.16  E-value=14  Score=44.15  Aligned_cols=66  Identities=8%  Similarity=-0.001  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      ...-..+...|+++.|..+|+++++.+|+....+...-.+.+..|.++..+...+-.....++...
T Consensus      1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~ 1518 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVD 1518 (2382)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHH
Confidence            344456677899999999999999999998777776667778888888888877766555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.16  E-value=3.1  Score=36.07  Aligned_cols=100  Identities=12%  Similarity=-0.006  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCc---hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKD---LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIALNLKACN  177 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~~a~~  177 (507)
                      +..+|..|.+.|+.++|++.|.++......   ..+..+++-.+.+..+++.....++.++-..-  +.+....+     
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n-----  113 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN-----  113 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH-----
Confidence            778999999999999999999998876543   34677788888899999999988888764321  11111110     


Q ss_pred             hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000        178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV  237 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~  237 (507)
                                                    .....-|..++.+++|.+|...|-...+..
T Consensus       114 ------------------------------rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 ------------------------------RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             ------------------------------HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence                                          112234566778899999999887765554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2041|consensus

Probab=94.07  E-value=8.6  Score=39.96  Aligned_cols=183  Identities=15%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             HHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH---------HHHhhhhhhccChHHHHHhhHHHHHh
Q psy12000        127 LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL---------NLKACNTYKLFTSRAAENQLKPILVS  197 (507)
Q Consensus       127 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~---------~~~a~~~~~~~~~~~A~~~l~~~~~~  197 (507)
                      ++.+| ++..|..+|..-...-.++.|...|-++-. -|.-....         ...|.+..-.|.+++|++.+-.+   
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~---  760 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA---  760 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc---
Confidence            33444 456666777666666666666665554311 11110000         11222333345666666543222   


Q ss_pred             hCCCCCCChhHhHHHHH-HHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc
Q psy12000        198 ILPPLIDVIPESRLNLV-IYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS  276 (507)
Q Consensus       198 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~  276 (507)
                           +      +..|+ -++.+.|+|-.-+.+++.-.....+.  .+-.+.-.+|+.-......+.|.++|..-...  
T Consensus       761 -----d------rrDLAielr~klgDwfrV~qL~r~g~~d~dD~--~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--  825 (1189)
T KOG2041|consen  761 -----D------RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDE--GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--  825 (1189)
T ss_pred             -----c------hhhhhHHHHHhhhhHHHHHHHHHccCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--
Confidence                 1      11222 24555666666666665432221111  11223334444444445566677766543321  


Q ss_pred             cccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        277 ECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       277 ~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                              ..++.|+++...|++-..+    ...-|++...+=.+|.++..-|.-++|.+.|.+.
T Consensus       826 --------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  826 --------ENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             --------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence                    1356777777777654332    2223445445556788888888888888877664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.06  E-value=0.23  Score=44.50  Aligned_cols=62  Identities=18%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhcHH-------HHHHHHHHHHHhC--C----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000        103 QLCLASIHFLRCHYQ-------EAIDIYKRILLDH--K----DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       103 ~~~la~~~~~~g~~~-------~A~~~~~~~l~~~--p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      .+.+|++|...|+-+       .|.+.|.+++...  |    +...+.+.+|.++.+.|++++|.+.|.+++...
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            678899999988844       5777777776554  2    335788899999999999999999999998643

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.88  E-value=6.8  Score=38.09  Aligned_cols=52  Identities=21%  Similarity=0.253  Sum_probs=36.3

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPN-PPEDTEFNIASCYFYLGMYLQANQILEKVP   67 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~~~   67 (507)
                      .+.+.-.+|+++.    +.+.+...+ ..++..+..+......|+++++...++++.
T Consensus         4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r   56 (352)
T PF02259_consen    4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKAR   56 (352)
T ss_pred             HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3567788899988    333333322 334667777878889999999999887763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1464|consensus

Probab=93.77  E-value=5.3  Score=36.49  Aligned_cols=111  Identities=18%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhhccHHHHHHHHHhCCC-------Cccccc----hHHHHHHhc
Q psy12000         19 LGQYKQALGIYETLRHLPNPPED----TEFNIASCYFYLGMYLQANQILEKVPP-------SRAKTR----LSFHLSHKL   83 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~~~~-------~~~~~~----~~~~~~~~~   83 (507)
                      ..+.++|+..|+++++..|...+    +.-.+..+++++|+|++-...+++...       ......    ++-.+. ..
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS-tS  118 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS-TS  118 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh-hh
Confidence            45799999999999999987653    445577789999999999988876421       111111    111111 11


Q ss_pred             CChhHHHH----HHHHHhhcHHH------HHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000         84 GDEKSLME----YHQKLEDSLEE------QLCLASIHFLRCHYQEAIDIYKRILLDH  130 (507)
Q Consensus        84 ~~~~~~~~----~~~~l~~~~~~------~~~la~~~~~~g~~~~A~~~~~~~l~~~  130 (507)
                      ...+-+..    -...+++.-.+      -..||.+|+..|+|.+-.++++++-..+
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC  175 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC  175 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence            11111211    12222222111      2357888888888888877777765543

>KOG3783|consensus

Probab=93.69  E-value=8.7  Score=38.73  Aligned_cols=61  Identities=15%  Similarity=-0.025  Sum_probs=49.0

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhh---cCC----CchHHHHHHHHHHhhCC-HHHHHHHHHhhccc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSY---YTS----DDSFNFNFAQAKCALGQ-YKEAEEMFLLVQNE  344 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~---~~~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~~~~~  344 (507)
                      +..+|.++-..|+-..|..+|+...+.   ...    .|.++|.+|..|..+|. ..+|.+++.++.+.
T Consensus       452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            456799999999999999988866521   112    26788999999999998 99999999998753

>KOG1464|consensus

Probab=93.53  E-value=2.8  Score=38.15  Aligned_cols=115  Identities=12%  Similarity=0.038  Sum_probs=66.5

Q ss_pred             hhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc-HHHHHH-Hhhhhhh-
Q psy12000        113 RCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPTS-RIALNL-KACNTYK-  180 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~a~~~-~a~~~~~-  180 (507)
                      ..+.++|++.|+++++..|+-.    .+.-.+-.+++++|+|++..+.|.+++.-     ..+. ....+. +-.+.-. 
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3478999999999999988643    45556677899999999999888887631     1111 111111 1001000 


Q ss_pred             -c----cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        181 -L----FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       181 -~----~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                       .    .-++.-..+++.+-      +..........||.+|+..++|.+-...++++
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAK------NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL  171 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAK------NERLWFKTNTKLGKLYFDRGEYTKLQKILKQL  171 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhh------cceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence             0    01122222222221      11111122346899999999999988888765

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.41  E-value=3.8  Score=39.47  Aligned_cols=117  Identities=13%  Similarity=-0.002  Sum_probs=75.7

Q ss_pred             hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc-----ChHHHH
Q psy12000        114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF-----TSRAAE  188 (507)
Q Consensus       114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~-----~~~~A~  188 (507)
                      .-.+.-+.+|+++|+.+|++..++...-.+..+..+-++..+.+++++..+|++..-+  .+.+.+.++     .+....
T Consensus        45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f~v~~~~  122 (321)
T PF08424_consen   45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELW--REYLDFRQSNFASFTVSDVR  122 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccCcHHHHH
Confidence            3456788999999999999999888777788888889999999999999999987643  223333332     344555


Q ss_pred             HhhHHHHHhhC---CC---CCCCh-------hHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        189 NQLKPILVSIL---PP---LIDVI-------PESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       189 ~~l~~~~~~~~---~~---~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      ..|.+.++...   ..   ..+..       ......+.......|..+.|+..++.
T Consensus       123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa  179 (321)
T PF08424_consen  123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQA  179 (321)
T ss_pred             HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHH
Confidence            55554432100   00   00111       12344455556667778888777653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.32  E-value=0.13  Score=45.28  Aligned_cols=62  Identities=13%  Similarity=-0.004  Sum_probs=57.3

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      ....+.++.+.|.+.|.+++..-|+...-|+.+|....+.|+++.|...+++.++.+|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34566799999999999999999999999999999999999999999999999999998865

>KOG2300|consensus

Probab=93.03  E-value=10  Score=37.68  Aligned_cols=133  Identities=15%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHhcC---CCChHHHH---HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchh--
Q psy12000        211 LNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYI---LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVP--  282 (507)
Q Consensus       211 ~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  282 (507)
                      .+++.+-+-.|++.+|++.+..+.   ...|.-.+   ..+.++..+|.+.-..+.++.|+.-|......-... .+.  
T Consensus       327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~  405 (629)
T KOG2300|consen  327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAF  405 (629)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHH
Confidence            345556667889998887765431   12222111   234456666665555556666665553221110011 111  


Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        283 GRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       283 ~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      .-.++|.+|...|+-+.--+.++.+--.+.+.       ..++|-.|...+.++++.||...+.+.++.
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm  474 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM  474 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            12357888888776655544444432221111       245566777888888888888888876643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.03  E-value=0.12  Score=45.62  Aligned_cols=58  Identities=14%  Similarity=0.035  Sum_probs=54.0

Q ss_pred             HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000        406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a  463 (507)
                      .++.+-|.+.|.+++..-|++...++.+|..-.|.|+++.|...|+++++++|++-..
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            4788899999999999999999999999999999999999999999999999998754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.92  E-value=5.4  Score=40.18  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             HHHHhhcCHHHHHHHHH--HHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         14 YCHFHLGQYKQALGIYE--TLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      ......||++++.+...  +++..-|  .+....++.-+.+.|..+.|+.+...     +  +..|.++...++.+.+.+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----~--~~rFeLAl~lg~L~~A~~  339 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD-----P--DHRFELALQLGNLDIALE  339 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H--HHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----h--HHHhHHHHhcCCHHHHHH
Confidence            44556788888777665  2232222  34466788888888999988875321     1  245677766655444333


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQ  156 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  156 (507)
                      ....+. .+.-+-.||.....+|+++-|.++|+++=    +    +..|..+|.-.|+.++=.++
T Consensus       340 ~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d----~~~L~lLy~~~g~~~~L~kl  395 (443)
T PF04053_consen  340 IAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAK----D----FSGLLLLYSSTGDREKLSKL  395 (443)
T ss_dssp             HCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----C----ccccHHHHHHhCCHHHHHHH
Confidence            222221 23346677777777777777777776632    1    22345566666665444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4507|consensus

Probab=92.84  E-value=0.77  Score=46.21  Aligned_cols=68  Identities=12%  Similarity=-0.034  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      ..+||.++.+.|-.-.|-..+.+.+.++...+-..+.+|.+|..+.+.++|++.|+.+++.+|+++..
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPEC  712 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence            67899999999999999999999999998788888999999999999999999999999999999874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.80  E-value=0.23  Score=30.98  Aligned_cols=28  Identities=18%  Similarity=0.045  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      .++.++|.+|..+|++++|+.++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567888888888888888888888764

>KOG2396|consensus

Probab=92.74  E-value=0.39  Score=47.39  Aligned_cols=69  Identities=22%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             HHHHHHHHhH--hhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc-chhHHHHHHHHHhcCCCchhhhh
Q psy12000        397 LCLASIHFLR--CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALN  465 (507)
Q Consensus       397 ~~l~~~~~~~--~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~-~~~A~~~~~~~l~~~P~~~~a~~  465 (507)
                      +.+..+.|..  +.+.+--++|.+++..+|++++++.+-|.-.+..+. .+-|...+...|+.+|++|..+.
T Consensus       107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  107 LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            4445566644  347777888888889999999888887777776665 77888888899999999888644

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.59  E-value=1.5  Score=34.25  Aligned_cols=102  Identities=17%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhH---HHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE---FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      .|..++..||+-+|+++.+..+...+++...|   ..-|.+++.+.         .+..+++...               
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA---------~~ten~d~k~---------------   57 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA---------KKTENPDVKF---------------   57 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH---------HhccCchHHH---------------
Confidence            36678889999999999999988888776544   22333222111         1111111000               


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                                    .+           .--|+++|.+.....|+....++.+|.=.-...-|+++....++.+.
T Consensus        58 --------------~y-----------Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   58 --------------RY-----------LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             --------------HH-----------HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence                          11           12366777777778888777777777655555566777776666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.57  E-value=0.6  Score=38.49  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=34.4

Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      ++.+++...+..+....|+.+.+-..-|+++...|++++|+..++.+.+.-|..|.+.-++++-++-++
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            444555555555555555555544444555555555555555555555554454544444444444333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.46  E-value=0.21  Score=27.65  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        316 SFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       316 ~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                      .+.+++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356678888888888888888775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.40  E-value=9.9  Score=35.90  Aligned_cols=44  Identities=9%  Similarity=0.098  Sum_probs=31.5

Q ss_pred             hhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000        283 GRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG  329 (507)
Q Consensus       283 ~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g  329 (507)
                      +...+|.+|..    ..++.+|+.+|+++.+...  ....++++ ++...|
T Consensus       189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            34457777755    4588999999998877654  55677788 666665

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.39  E-value=8.7  Score=35.46  Aligned_cols=201  Identities=16%  Similarity=0.083  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhcCCHHHHHHHHH---HHHhcCCCcHHHHH
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKLDYYDVSQEQVA---MYLAQKPTSRIALN  172 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~---~~l~~~p~~~~a~~  172 (507)
                      +.+|.-..+.+++++|+..|.+++...-        +.......++.+|...|++..--+...   .+.........+..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            4567777888999999999999987632        234567789999999998765433322   22222222211111


Q ss_pred             HHhhhh---hhccChHHHHHhhHHHHHhhCCCCCCC--hhHhHHHHHHHHHhhccHHHHHHHHHh-------cCC--CCh
Q psy12000        173 LKACNT---YKLFTSRAAENQLKPILVSILPPLIDV--IPESRLNLVIYHLKQEEHQEAFDLIKN-------LEP--SVP  238 (507)
Q Consensus       173 ~~a~~~---~~~~~~~~A~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~l~~-------~~~--~~~  238 (507)
                      ++..+.   +...+.+.-+...+..++ ....-...  ..+.--.++.+++++|+|.+|+..+..       ++.  .-.
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li  165 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI  165 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence            111111   111223333333333221 00000000  001223567789999999999886643       221  112


Q ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhh--HHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000        239 QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQ--CMASSFFLLRSFKDVILYLSSIKS  309 (507)
Q Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~~~~~~Ai~~~~~~~~  309 (507)
                      ..+.+...++..+.....+...+..|...-..+--++    ...+..  .=|..+....+|.-|..||=.+.+
T Consensus       166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp----qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E  234 (421)
T COG5159         166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP----QLQAQLDLLSGILHCDDRDYKTASSYFIEALE  234 (421)
T ss_pred             ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH----HHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence            2345556666666655555556655544332221111    111111  114445566677777776655543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.16  E-value=0.55  Score=28.46  Aligned_cols=29  Identities=28%  Similarity=0.309  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHH--HHHHHHhCC
Q psy12000        103 QLCLASIHFLRCHYQEAIDI--YKRILLDHK  131 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~--~~~~l~~~p  131 (507)
                      ++.+|..++.+|++++|+..  |+-+...+|
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            45566666666666666666  334444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.12  E-value=0.27  Score=30.57  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDH  130 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~  130 (507)
                      +.++|.+|..+|++++|+.++++++...
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            5689999999999999999999998764

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.07  E-value=1  Score=44.30  Aligned_cols=123  Identities=16%  Similarity=0.052  Sum_probs=82.3

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC---CccccchHHHHHHhcCChhHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP---SRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      ....||...|-+....+++..|..|+.-...+.+.-.+|.|+.|...+..+..   +....                   
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~-------------------  359 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST-------------------  359 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH-------------------
Confidence            34579999999999999999999999999999999999999999987654421   11110                   


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                                .-.+-...+..|++++|.+.-.-++...-+++++..-.|..--.+|-+|+|...+++++.++|..
T Consensus       360 ----------~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        360 ----------LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             ----------HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence                      00112233555666666666666665555555555444444555666677777777766665543

>KOG3824|consensus

Probab=92.01  E-value=0.27  Score=45.35  Aligned_cols=68  Identities=10%  Similarity=-0.039  Sum_probs=60.5

Q ss_pred             HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      .+..|+.++|..+|+.++...|+++.+...+|.....-++.=+|-.+|-+++.+.|.|..|+.++.+.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34568999999999999999999999999999888888888899999999999999999998876654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.88  E-value=1.5  Score=37.99  Aligned_cols=100  Identities=18%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      .+|.-|...||+++|++.|.++.+.....   .+.++.+.++.+..|++..+...+.++......          .++..
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~----------~~d~~  110 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK----------GGDWE  110 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----------cchHH
Confidence            45666666666666666666655543322   245556666666666666666655554211000          00000


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH  130 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  130 (507)
                          ...      .-....|..+..+++|.+|.+.|-.++...
T Consensus       111 ----~~n------rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  111 ----RRN------RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             ----HHH------HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence                000      002345666777899999999887776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=1.2  Score=40.94  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=62.4

Q ss_pred             HHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        401 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       401 ~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ..+...++.+.|..+.++.+..+|+++.-.--.|.+|.++|-+.-|++.++-+++.-|+++.+..++..+
T Consensus       189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            4555667899999999999999999997777789999999999999999999999999999998877664

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.75  E-value=6.8  Score=37.05  Aligned_cols=54  Identities=11%  Similarity=-0.095  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        118 EAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      .|+..|.++-...  ++.+.+.+|.+|..    ..++.+|...|+++.....  ..+....+
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            5666666655444  45555666666644    2356666666666665554  44444444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.46  E-value=0.8  Score=50.10  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        408 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       408 ~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      .+.+|+..|+++. ..|.-|--+...|.+|.++|+++|-++++.-+++.+|++|..-.+.--+-|++-.
T Consensus       534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            5889999998874 3455566667789999999999999999999999999999987777777666553

>KOG4814|consensus

Probab=91.44  E-value=2.1  Score=43.71  Aligned_cols=94  Identities=22%  Similarity=0.107  Sum_probs=74.5

Q ss_pred             HHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        400 ASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       400 ~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      +.-++...+|..++..|+..+..-|.+      .++...++.||.++.+.|.|+++++.+=+-+|.++..-....+..--
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~  440 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA  440 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            345566789999999999988755433      45677899999999999999999999999999999987777777666


Q ss_pred             cCChHHHHHHHHHHHHhCCC
Q psy12000        474 LFTSRAAENQLKPILVSAGP  493 (507)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~  493 (507)
                      ..+..+|-.-...+....-+
T Consensus       441 E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  441 EDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             hcchHHHHHHHHHHHhhhcc
Confidence            66777777666666655433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.11  E-value=10  Score=33.32  Aligned_cols=53  Identities=23%  Similarity=0.143  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHhcCCHHHH
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD----LLALNVYGAMCYYKLDYYDVS  153 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A  153 (507)
                      ++-++.||..|. .-+.++|+.++.++++..+.    ++++...||.++.++|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344556665544 55777777777777776532    466777777777777777766

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.05  E-value=0.31  Score=26.98  Aligned_cols=23  Identities=9%  Similarity=-0.094  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q psy12000        136 LNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus       136 ~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666666553

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.95  E-value=1.2  Score=40.03  Aligned_cols=63  Identities=22%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             hhhHHHHHHHhhcC-------HHHHHHHHHHHhcCCCC--C----hhhHHHHHHHHHhhccHHHHHHHHHhCCCCc
Q psy12000          8 TDAWLGYCHFHLGQ-------YKQALGIYETLRHLPNP--P----EDTEFNIASCYFYLGMYLQANQILEKVPPSR   70 (507)
Q Consensus         8 ~~~~lg~~~~~~g~-------~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~   70 (507)
                      +.+.+|.+|-..|+       +..|...|.++.+....  .    ..+.+.+|.+..+.|++++|..+|.++..+.
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            34557888888888       55577777777765432  2    3578899999999999999999999986543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.79  E-value=0.85  Score=34.82  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=42.9

Q ss_pred             HHHhhcHHHHHHHHHHHHHhCCc---------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        110 HFLRCHYQEAIDIYKRILLDHKD---------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       110 ~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      ....|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..++++++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35679999999988888766432         2356678999999999999999999998754

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.73  E-value=1.1  Score=41.01  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      ++=.++...++++.|..+-++.+..+|+++.-..-.|.+|.++|.+.-|++.++.++..-|+.+.+-.++.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            45567788899999999999999999999988888899999999999999999999999999998765443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.68  E-value=1.1  Score=32.48  Aligned_cols=56  Identities=16%  Similarity=0.077  Sum_probs=45.8

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhhccHHHHHHHHH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEF---NIASCYFYLGMYLQANQILE   64 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~eA~~~~~   64 (507)
                      ...-|.-+|...+.++|+..+.++++..++.++-+.   ++..++...|+|.+++.+.-
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344577788999999999999999999888876554   46667889999999998753

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.37  E-value=2  Score=31.10  Aligned_cols=57  Identities=12%  Similarity=0.025  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH---HHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA---LNVYGAMCYYKLDYYDVSQEQVAM  159 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~  159 (507)
                      .+.-|.-++.+.+.++|+..++++++..++.++   +.-.+..+|...|+|.+++.+.-.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666678999999999999999999877654   455567789999999999887544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.20  E-value=0.92  Score=27.46  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCC
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVA--MYLAQKPT  166 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~  166 (507)
                      +.++.+|..+...|++++|++.|+  -+...+|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            456788999999999999999955  66666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.05  E-value=6.1  Score=30.91  Aligned_cols=30  Identities=20%  Similarity=0.206  Sum_probs=23.7

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLA  135 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  135 (507)
                      +|.-++..|++-+|+++.++++..++++..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~   31 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES   31 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence            356678888999999999988888876653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.81  E-value=3.8  Score=40.29  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhC---------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDH---------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      ...|..++...|+|..|++..+.+- .+         +-+..++|.+|.+|+.+++|..|++.|..++
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999887642 12         2356788999999999999999999999986

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.44  E-value=2.6  Score=41.51  Aligned_cols=49  Identities=14%  Similarity=-0.074  Sum_probs=36.7

Q ss_pred             hhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        293 LLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       293 ~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                      ..|+.-.|-.-...++...|.+|......+.+....|+|+.|.+.+..+
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~  349 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV  349 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence            3567777776555566666777766666899999999999999988654

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.34  E-value=16  Score=33.87  Aligned_cols=29  Identities=34%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             CCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        313 SDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       313 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                      .++..+..+|..|.+.|++.+|..+|-..
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence            45788888999999999999999999654

; PDB: 3LKU_E 2WPV_G.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.92  E-value=9.1  Score=38.59  Aligned_cols=30  Identities=10%  Similarity=-0.011  Sum_probs=19.4

Q ss_pred             CChhhHHHHHHHHHhhccHHHHHHHHHhCC
Q psy12000         38 PPEDTEFNIASCYFYLGMYLQANQILEKVP   67 (507)
Q Consensus        38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~   67 (507)
                      +++..|-.+|...+.+|+++-|+.++.++.
T Consensus       345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  345 DDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            345566666666666677766666666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.67  E-value=1.9  Score=40.13  Aligned_cols=58  Identities=9%  Similarity=-0.108  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                      +..++..+...|+++.+++.+++.+..+|.+..++..+-..|+..|+...|+..|+++
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            3445555556666666666666666666666666666556666666666666655554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.34  E-value=0.95  Score=28.84  Aligned_cols=26  Identities=12%  Similarity=0.137  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        137 NVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       137 ~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      .+.+|.+|+.+|+.+.|.+.++.++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35789999999999999999999884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.18  E-value=11  Score=29.80  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=40.7

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCc------------hhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKD------------LLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      -|.-...-|-|++|...++++......            +.-.+-.|+.++..+|+|++++.....++
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            344556678999999999999876521            12345668889999999999998877765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.85  E-value=19  Score=34.65  Aligned_cols=153  Identities=8%  Similarity=0.041  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHc
Q psy12000        297 FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL  376 (507)
Q Consensus       297 ~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  376 (507)
                      .+.-+.+++++++.+|++...+..+-.+..+..+.++..+-+++++...+.+...|..+|..+...              
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~--------------  112 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSN--------------  112 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH--------------
Confidence            345567888888888877766655556666777888888888888876665555554432111000              


Q ss_pred             CCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC-------Cc----hhhhHHHHHhhccccccchh
Q psy12000        377 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH-------KD----LLALNVYGAMCYYKLDYYDV  445 (507)
Q Consensus       377 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~-------p~----~~~~~~~la~~y~~~g~~~~  445 (507)
                                  +..        -.+.-...-|.+++..+.......       |+    ...+...+..-....|..+.
T Consensus       113 ------------~~~--------f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~  172 (321)
T PF08424_consen  113 ------------FAS--------FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER  172 (321)
T ss_pred             ------------hcc--------CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence                        000        001111223444444444443321       11    12334445556668888888


Q ss_pred             HHHHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        446 SQEQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       446 A~~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      |+..++..++.+   |......           ........|..-|++.-||
T Consensus       173 Ava~~Qa~lE~n~~~P~~~~~~-----------~~~~~~~~fe~FWeS~vpR  213 (321)
T PF08424_consen  173 AVALWQALLEFNFFRPESLSSS-----------SFSERLESFEEFWESEVPR  213 (321)
T ss_pred             HHHHHHHHHHHHcCCccccccc-----------cHHHHHHHHHHHhCcCCCC
Confidence            888888888875   3332211           1114455688888886666

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.50  E-value=13  Score=29.55  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCCh----------hh--HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPE----------DT--EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL   79 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~--~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~   79 (507)
                      -|.-.+..|-|++|...+.++.+...+-|          ++  +-.++..+..+|+|++++...+++..       +|+-
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~-------YFNR   87 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR-------YFNR   87 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-------HHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-------HHhh
Confidence            36667778999999999999877532221          22  34578889999999999987765421       1111


Q ss_pred             HHhcC-ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000         80 SHKLG-DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL  127 (507)
Q Consensus        80 ~~~~~-~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  127 (507)
                      --.+. +.+.+.         +...++.|..+...|+.++|+..|+.+-
T Consensus        88 RGEL~qdeGklW---------IaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   88 RGELHQDEGKLW---------IAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             H--TTSTHHHHH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ccccccccchhH---------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            11111 122211         1124677888889999999999998864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1914|consensus

Probab=87.40  E-value=36  Score=34.62  Aligned_cols=64  Identities=8%  Similarity=0.001  Sum_probs=51.7

Q ss_pred             ccchhhHHHH-HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000          5 DSLTDAWLGY-CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP   68 (507)
Q Consensus         5 ~~~~~~~lg~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~   68 (507)
                      |-++.-|-.- -..+...+++....|++.+...|..+.+|.......+..++|+..+..|.++..
T Consensus        17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344444322 233445899999999999999999999999999999999999999999988754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.20  E-value=0.91  Score=27.87  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=21.7

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcC
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHL   35 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~   35 (507)
                      +++..+|.+....++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667788888888888888888777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.80  E-value=1  Score=34.36  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=40.1

Q ss_pred             hHhhHHHHHHHHHHHhhcC-----Cc----hhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000        405 LRCHYQEAIDIYKRILLDH-----KD----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  457 (507)
Q Consensus       405 ~~~~~~~Ai~~~~~~l~~~-----p~----~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~  457 (507)
                      ..++|.+|++.+.+..+..     +.    .......+|.++...|++++|+..++.++++-
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3478999988888776422     12    12345678999999999999999999998763

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.56  E-value=22  Score=31.28  Aligned_cols=20  Identities=10%  Similarity=0.112  Sum_probs=12.5

Q ss_pred             HHhhccHHHHHHHHHhcCCC
Q psy12000        217 HLKQEEHQEAFDLIKNLEPS  236 (507)
Q Consensus       217 ~~~~~~~~~A~~~l~~~~~~  236 (507)
                      +....+|.+.++....+.+.
T Consensus        58 l~~le~Y~kCielAa~Iq~i   77 (203)
T PF11207_consen   58 LEALEKYSKCIELAAQIQHI   77 (203)
T ss_pred             HHHHHHHHHHHHHHhcCeee
Confidence            44456677777777666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=86.41  E-value=2.5  Score=40.95  Aligned_cols=85  Identities=14%  Similarity=0.052  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCC-----------c--h-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHK-----------D--L-----LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p-----------~--~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      .-|...+.+|+|..|+.-|..+|+...           .  +     ..+-..|..||+++++.+-|+...-+.+..+|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            456788889999999888888887642           1  1     123346889999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAEN  189 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~  189 (507)
                      +..-....|.+...+.++.+|-.
T Consensus       261 ~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Confidence            98777777777777777766653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.01  E-value=1.4  Score=28.12  Aligned_cols=26  Identities=15%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhc
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRH   34 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~   34 (507)
                      .+.+|.+|..+||++.|.+.+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            46678888888888888888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.63  E-value=2.8  Score=38.98  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      ..++..+...|+++.++..+++++..+|.+...|..+-..|+..|+...|+..|++.
T Consensus       157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            346778888999999999999999999999999999999999999999999998865

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=85.14  E-value=17  Score=29.50  Aligned_cols=51  Identities=16%  Similarity=0.051  Sum_probs=34.3

Q ss_pred             HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      +|+-++--+.+..+.+.+.-+|.+.+.+|.+|.++|+..+|.+.++++-+.
T Consensus        99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            355455555666666555566788889999999999999999999988764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.82  E-value=1.8  Score=24.87  Aligned_cols=30  Identities=20%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q psy12000         20 GQYKQALGIYETLRHLPNPPEDTEFNIASC   49 (507)
Q Consensus        20 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~   49 (507)
                      |+++.|...|++++...|.++++|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578899999999999999999999876653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1258|consensus

Probab=84.52  E-value=52  Score=33.85  Aligned_cols=61  Identities=7%  Similarity=-0.064  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHH-HHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY-GAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      +-..|..-++.|..+.+.++|++.+.--|-+.+.+.. ++.+--..|+.+.=...|+++...
T Consensus        82 W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~  143 (577)
T KOG1258|consen   82 WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSY  143 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            3456677777788888888888888877777666654 333444556666666666666544

>KOG2396|consensus

Probab=83.59  E-value=10  Score=37.96  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHH
Q psy12000        111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~  169 (507)
                      -+.+.+.+--.+|.+++..+|+++++|..-|.-.+.-+. .+.|..+|.+.++.+|+++.
T Consensus       116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence            344559999999999999999999999998877776665 99999999999999999997

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.54  E-value=1.3  Score=43.57  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhh--------cCCchhhhHHHHHhhccccccchhHHHHHHHHH
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILL--------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  454 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~--------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l  454 (507)
                      +-.+|...|+|..|++.++-+.-        ..+-...+++++|.||.-+++|.+|+..|..++
T Consensus       128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577788999999998876532        233446788899999999999999999888776

>PRK11619 lytic murein transglycosylase; Provisional

Probab=83.25  E-value=69  Score=34.23  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             HHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        288 ASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       288 a~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      .......++++.+...+..+-........+.|++|.++..+|+.++|...|+++..
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            34455788898887777765443345567899999999999999999999999743

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.24  E-value=2.3  Score=26.11  Aligned_cols=28  Identities=7%  Similarity=-0.032  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        135 ALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       135 ~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      +++..||.+.+..++|++|++-|++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3556677777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=81.83  E-value=1.6  Score=40.52  Aligned_cols=60  Identities=18%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             HhhHHHHHHHHHHHhhcCCchhhhHHH-HHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000        406 RCHYQEAIDIYKRILLDHKDLLALNVY-GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  465 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~-la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~  465 (507)
                      .+-|.+--.+|..++..+|.+.+++.. .+.=|+-.++.+-+...+...+..+|++|..+-
T Consensus       120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            356777778888999999999987655 455567889999999999999999999998754

>KOG3783|consensus

Probab=81.77  E-value=49  Score=33.66  Aligned_cols=64  Identities=17%  Similarity=0.022  Sum_probs=45.3

Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHHHhhCC--CCCCChhHhHHHHHHHHHhhcc-HHHHHHHHHhc
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPILVSILP--PLIDVIPESRLNLVIYHLKQEE-HQEAFDLIKNL  233 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~l~~~  233 (507)
                      -+.++|+++..+|+...|...+.-..++...  ...=..|.+.+.+|..|+.++. ..++...+.+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA  517 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA  517 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence            4667899999999988888877654322111  1112356788999999999888 88888777654

>KOG2581|consensus

Probab=80.82  E-value=36  Score=33.27  Aligned_cols=53  Identities=13%  Similarity=0.070  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHhh----cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        407 CHYQEAIDIYKRILL----DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~----~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                      +.|+.|-+...+..-    .+.+.....+++|.+-.-+++|..|.+++-+++.+-|.
T Consensus       223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            445555555554431    11123345556666666666666666666666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 8   TDAW--LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK 65
            +AW  LG  ++  G Y +A+  Y+    L     +  +N+ + Y+  G Y +A +  +K
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 66  ---VPPSRAKTRLSF-HLSHKLGDEKSLMEYHQK-LE---DSLEEQLCLASIHFLRCHYQ 117
              + P  A+   +  +  +K GD    +EY+QK LE    S E    L + ++ +  Y 
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 118 EAIDIYKRIL 127
           EAI+ Y++ L
Sbjct: 121 EAIEYYQKAL 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 68/511 (13%), Positives = 134/511 (26%), Gaps = 143/511 (27%)

Query: 78  HLSHKLGDEKSLMEYHQK--LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--KDL 133
           H  H +  E    +Y  K  L    +     A +    C   +  D+ K IL       +
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFED-----AFVDNFDCKDVQ--DMPKSILSKEEIDHI 54

Query: 134 LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP 193
           +      +            QE++     +     + +N      YK   S     Q +P
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRIN------YKFLMSPIKTEQRQP 105

Query: 194 IL-----VSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL----- 243
            +     +     L +           Y++ + +      L + L    P + +L     
Sbjct: 106 SMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVL 159

Query: 244 ---KAV----------VQ---------VTIGQDTGSREMVKAAQALF-QLVGSSQSECDT 280
              K            VQ         + +        +++  Q L  Q+  +  S  D 
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 281 VPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS----DD--------SFNFNFAQAKC-- 326
                  ++    + S +  +  L   K Y        +        +FN       C  
Sbjct: 220 ------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKI 268

Query: 327 -----------ALGQYKEAEEMFLLVQNEGLKNDYV------YISHLTKCSPSRAKTRLS 369
                       L        + L   +  L  D V      Y+    +  P    T   
Sbjct: 269 LLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 370 FHLS---HKLGDEKSLMEYHQKLE-DSLEE--QLCLASIHF--LRCHYQE-AI-----DI 415
             LS     + D  +  +  + +  D L    +  L  +     R  +   ++      I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 416 YKRIL------------------LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK 457
              +L                  L    L+            +    +  E     L  K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLE-----LKVK 438

Query: 458 PTSRIALNLKACNTYKLFTSRAAENQLKPIL 488
             +  AL+    + Y +  +  +++ + P L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 58/452 (12%), Positives = 119/452 (26%), Gaps = 135/452 (29%)

Query: 85  DEKSLMEYHQKLEDSLEEQLCLASIHF--LRCHYQEAIDIYKRILLDHKDLLALNVYGAM 142
             ++++E  QKL   ++      S H   ++          +R+L        L V    
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249

Query: 143 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPL 202
               L   +V   +             A NL  C    L T+R  +             +
Sbjct: 250 ----LL--NVQNAKAWN----------AFNLS-CKI--LLTTRFKQ-------------V 277

Query: 203 IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK 262
            D +  +       H+  + H       +          +L   +     QD   RE++ 
Sbjct: 278 TDFLSAAT----TTHISLDHHSMTLTPDEVKS-------LLLKYLDCRP-QDL-PREVLT 324

Query: 263 AAQALFQLVGSSQSEC----DTVPGRQCMASSFFLLRSFKDVILYLSS--IKSYYTSDDS 316
                  ++  S  +     D      C      L    +  +  L     +  +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 317 FNFNF---AQAKCALGQYKEAEEMFLLVQ--------NEGLKNDYVYISHLTKCSPSRAK 365
           F  +          +       ++ ++V          +  K   + I            
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PS--------- 430

Query: 366 TRLSFHLSHKLGDEKSLMEYHQKLEDS--LEEQLCLASI---------------HFLRCH 408
             +   L  KL +E +L   H+ + D   + +      +               H     
Sbjct: 431 --IYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 409 YQEAIDIYKRILLD--------HKDLLALNVYGAMC-------YYKLDYYDVSQEQVAMY 453
           + E + +++ + LD          D  A N  G++        +YK  Y   +  +    
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERL 544

Query: 454 LAQKPTSRIALNLKACNTYKLFTSRAAENQLK 485
           +               N    F  +  EN + 
Sbjct: 545 V---------------NAILDFLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 40/262 (15%), Positives = 72/262 (27%), Gaps = 75/262 (28%)

Query: 6   SLTDAWLG--YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL 63
            +TD        H  L  +   L   E    L                YL    Q    L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------------YLDCRPQD---L 318

Query: 64  EKVPPSRAKTRLSFHLS---HKLGDEKSLMEYHQKLE-DSLEE--QLCLASIHF--LRCH 115
               P    T     LS     + D  +  +  + +  D L    +  L  +     R  
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 116 YQE-AI-----DIYKRIL------------------LDHKDLLALNVYGAMCYYKLDYYD 151
           +   ++      I   +L                  L    L+            +    
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPS 430

Query: 152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRL 211
           +  E     L  K  +  AL+    + Y +   +  ++        ++PP +D   +   
Sbjct: 431 IYLE-----LKVKLENEYALHRSIVDHYNI--PKTFDSD------DLIPPYLD---QYFY 474

Query: 212 NLVIYHLKQEEHQEAFDLIKNL 233
           + + +HLK  EH E   L + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 28/154 (18%)

Query: 5   DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILE 64
           D +      Y + H+G +           HL N              +  ++L    + +
Sbjct: 463 DLIPPYLDQYFYSHIG-H-----------HLKNIEHPERMT-----LFRMVFLDFRFLEQ 505

Query: 65  KVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK 124
           K+         S  + + L   K    Y    +   E  +  A + FL    +E +   K
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-AILDFLP-KIEENLICSK 563

Query: 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA 158
                + DLL +    A+       ++ + +QV 
Sbjct: 564 -----YTDLLRI----ALMAEDEAIFEEAHKQVQ 588

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 9e-08
 Identities = 67/466 (14%), Positives = 136/466 (29%), Gaps = 95/466 (20%)

Query: 12  LGYCHFHLGQYKQALGIYETLRHLPNPPEDTE---------FNIASCYFYLGMYLQANQI 62
           L Y     GQ + AL        L       +          N A  Y+++G        
Sbjct: 57  LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116

Query: 63  LEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI 122
           ++KV                   EK    Y  +  +   E+     +       + A   
Sbjct: 117 VDKVKHV---------------CEKFSSPYRIESPELDCEE-GWTRLKCGGNQNERAKVC 160

Query: 123 YKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY---LAQKPTSRIALNLKACNT 178
           +++ L    K+    +    +  Y+LD +  SQ  +      +   P ++    L A   
Sbjct: 161 FEKALEKKPKNPEFTSGLA-IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK---NLEP 235
           +K+      E + + ++   L      + +   +   ++ +++E  +A +L+K      P
Sbjct: 220 HKMREEGEEEGEGEKLVEEAL-EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR 295
           +    +                R  V     L +     + +               LL 
Sbjct: 279 NNAYLHCQIGCCY---------RAKVFQVMNLRENGMYGKRK---------------LLE 314

Query: 296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH 355
                + +L        +        A       QY+EAE  F    ++ L      + H
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374

Query: 356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEY------------HQKLEDSLEEQLC----- 398
           L            +F L     ++K++  +             +K++D L++        
Sbjct: 375 LRYG---------NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425

Query: 399 ----------LASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYG 433
                     LA +  L    Q+A +  +R L        A +  G
Sbjct: 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 25/253 (9%)

Query: 16  HFHLGQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILEK--VPPSRAK 72
            F++G Y+Q +   + ++   P    + +  +   Y     Y      ++    P  +A 
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68

Query: 73  TRLSFHLSHKLGDEKSLMEYHQKLEDSLEE-----QLCLASIHFLRCHYQEAIDIYKRIL 127
              + +L+     +  + E  +++  S++       L  ASI+F   +   A+       
Sbjct: 69  RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR-----T 123

Query: 128 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA 187
           L   D L           KLD  D++++++     Q   + +     A  +      +  
Sbjct: 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183

Query: 188 ENQLKPILVSILPPLIDVIPES---RLNLVIYHLKQEEHQEA---FDLIKNLEPSVPQEY 241
           +         I   + D    +          H+ Q   + A        + +   P+  
Sbjct: 184 DA------YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237

Query: 242 ILKAVVQVTIGQD 254
           I   V+   +G+ 
Sbjct: 238 INLVVLSQHLGKP 250

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 7/196 (3%)

Query: 12  LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI--ASCYFYLGMYLQANQILEKVPPS 69
                    +    +   +          +T F +  AS YFY      A + L +    
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130

Query: 70  RAKTRLSF-HLSHKLGDE--KSLMEYHQKLEDSLEEQLCLASIHFL--RCHYQEAIDIYK 124
                     L     D   K L +   + ED+   QL  A +         Q+A  I++
Sbjct: 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190

Query: 125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS 184
            +       L L    A C+     ++ ++  +   L +       L      +  L   
Sbjct: 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250

Query: 185 RAAENQLKPILVSILP 200
               N+    L     
Sbjct: 251 PEVTNRYLSQLKDAHR 266

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 39/340 (11%), Positives = 93/340 (27%), Gaps = 43/340 (12%)

Query: 11  WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSR 70
           WL   +   G Y +A  +      L N      +  A C   L  +  A  +L +  P R
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKED-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180

Query: 71  AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH 130
              + +            L+     ++           ++    ++  A + YK      
Sbjct: 181 KDEKNA----------NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA---- 226

Query: 131 KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ 190
              L ++      + +L    +        L  K          A     L+  +  +  
Sbjct: 227 ---LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283

Query: 191 LKPILVSI--LPPLIDVIPES---RLNLVIYHLKQEEHQEAFDLIK---NLEPSVPQEYI 242
            +  L         I+ + +S    L        +    +   +      ++P     Y 
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343

Query: 243 LKAVVQVTIGQDTGSREMVKAAQALFQLV-GSSQSECDTVPGRQCMASSFFLLRSFKDVI 301
           L        G+     ++   +  L       + +          +   +  +    +  
Sbjct: 344 LHLASLHESGEKN---KLYLISNDLVDRHPEKAVTWL-------AVGIYYLCVNKISEAR 393

Query: 302 LYLS---SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF 338
            Y S   ++   +    ++   FA +    G++ +A   +
Sbjct: 394 RYFSKSSTMDPQFG--PAWI-GFAHSFAIEGEHDQAISAY 430

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 35/263 (13%), Positives = 85/263 (32%), Gaps = 27/263 (10%)

Query: 207 PESRLNLVIYHLKQEEHQEAFDLIKN--LEPSVPQEYILKAVVQVTIGQDTGSREMVKAA 264
           P     L   +    ++  A  L+    L         L A   V +    G+  ++   
Sbjct: 117 PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176

Query: 265 QALFQLVGSSQSECDTVPGRQCMASSFFLL-RSFKDVILYLSSIKSYYTS-----DDSFN 318
               +   ++        G +  AS  +L  + + ++  +  + + Y  +          
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236

Query: 319 FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD 378
           F+   +   L   +E + +  L  +   K D  ++  L           L  + +    +
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM---------LKLNKTSHEDE 287

Query: 379 EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGA 434
            +   +Y   +     S +  LC A   F+R  + + + I  +IL +D  +L    ++ A
Sbjct: 288 LRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347

Query: 435 MCYYKLDYYDVSQEQVAMYLAQK 457
              ++    +         ++  
Sbjct: 348 -SLHESGEKN-----KLYLISND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 36/358 (10%), Positives = 84/358 (23%), Gaps = 55/358 (15%)

Query: 96  LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQE 155
           +  +  +   LA ++     Y  A  +  +  L ++      +  A C  KL  +  +  
Sbjct: 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA-AFCLVKLYDWQGALN 171

Query: 156 QVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVI 215
            +      +   + A  L   +                         I +          
Sbjct: 172 LLGETNPFRKDEKNANKLLMQD-----------------------GGIKLEASMCYLRGQ 208

Query: 216 YHLKQEEHQEAFDLIK---NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVG 272
            +        A +  K    ++         +A  Q+       + E       L     
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDA-----KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263

Query: 273 SSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK 332
           S +             +        +    YLSSI     S D      A       ++ 
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL-CKADTLFVRSRFI 322

Query: 333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKT--RLSFHLSHKLGDEKSLMEYHQKLE 390
           +   +                + + +  P            L       K  +  +  ++
Sbjct: 323 DVLAIT---------------TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 391 ---DSLEEQLCLASIHFLRCHYQEAIDIYKR-ILLDHKDLLALNVYGAMCYYKLDYYD 444
              +     L +   +       EA   + +   +D +   A   +    +     +D
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH-SFAIEGEHD 424

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 86  EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCY 144
           E  + E    L+++L+  + LA  H+  C ++    +   ++  D      L V+     
Sbjct: 8   ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG-TL 66

Query: 145 YKLDYYDVSQEQVAMYLAQK 164
            +L+  +        YL+ K
Sbjct: 67  VELNKAN-----ELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCY 437
           E  + E    L+++L+  + LA  H+  C ++    +   ++  D      L V+     
Sbjct: 8   ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG-TL 66

Query: 438 YKLDYYDVSQEQVAMYLAQK 457
            +L+  +        YL+ K
Sbjct: 67  VELNKAN-----ELFYLSHK 81

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 29/251 (11%), Positives = 73/251 (29%), Gaps = 38/251 (15%)

Query: 12  LGYCHFHLGQYKQALGIYET----LRHLPNPPEDTEF--NIASCYFYLG-------MYLQ 58
            G   F   +Y +A+G Y      L  + +  E  EF   +A  Y+++          LQ
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

Query: 59  ANQILEKVPPSRAKTRLSFHL----SHKLGDEKSLMEYHQKLEDSLEEQLC--------- 105
           A  I +  P    +T  S  +              + + +   +   +            
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226

Query: 106 -LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM-----CYYKLDYYDVSQE--QV 157
            +A+ +      Q A++ +++     ++ +   +   +        K      + +  + 
Sbjct: 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286

Query: 158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSIL--PPLIDVIPESRLNLVI 215
            +      + +            ++     E ++  +L S      L   I     +   
Sbjct: 287 GLDHITARSHKF-YKELFLFLQAVYKETVDERKIHDLL-SYFEKKNLHAYIEACARSAAA 344

Query: 216 YHLKQEEHQEA 226
                   ++A
Sbjct: 345 VFESSCHFEQA 355

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 37/251 (14%)

Query: 12  LGYCHFHLGQYKQALGIYE----TLRHLPNPPEDTEF--NIASCYFYLG-------MYLQ 58
            G       +Y  A+  ++     L  + +  E  EF   ++  Y+Y+           Q
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 59  ANQILEKVPPSRAKTRLSFHL----SHKLGDEKSLMEYHQK-------LEDSLEEQLC-- 105
           A +I ++      +      L       L   +  + + QK        +          
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228

Query: 106 -LASIHFLRCHYQEAIDIYKRIL-----LDHKDLLALNVYG-AMCYYKLDYYDVSQE--Q 156
            +      +  Y++AI  +KR +      +    L    +     +YKL   D + E   
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 157 VAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSI-LPPLIDVIPESRLNLVI 215
             M  +QK    I L+ +      L+ S   E  ++     +    L   + +  +++  
Sbjct: 289 KGMAYSQKAGDVIYLS-EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347

Query: 216 YHLKQEEHQEA 226
           Y+ +++  Q+A
Sbjct: 348 YYHERKNFQKA 358

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 38/173 (21%)

Query: 4   ADSLTDAWLGYCHFHLGQYKQALGIYE----TLRHLPNPPE--DTEFNIASCYFYLGMYL 57
           +   +   LG  +F+LG Y +A+  ++      + + +      +  N+ +    +G + 
Sbjct: 86  SAIYSQ--LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143

Query: 58  QANQILEKVPPSRAKTRLSFHLSHKLGDEKS-------LMEYHQKLEDSLEEQLCLASIH 110
           +A    E+             L+ +LGD  S       L   +      L ++       
Sbjct: 144 EAAICCER----------HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 111 FLRCHYQEAIDIYK------RILLDHKDL-LALN----VYGAMCYYK--LDYY 150
            ++     A++ Y+      R L D      A       Y  +  ++  ++++
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 32/204 (15%)

Query: 1   MGNADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTE------FNIASCYFYLG 54
           +G+  SL+ +        LG        ++      +  +                   G
Sbjct: 3   LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62

Query: 55  -------MYLQANQILEKVPPSRAKTRLSFHLSH-KLGDEKSLMEYHQK-------LEDS 99
                   +  A Q   +   + +        ++  LGD    M+YH+        + D 
Sbjct: 63  DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122

Query: 100 LEEQLC---LASIHFLRCHYQEAIDIYK------RILLDHKDL-LALNVYGAMCYYKLDY 149
           L E      L +   +   + EA    +      R L D      AL   G   Y+    
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG-NVYHAKGK 181

Query: 150 YDVSQEQVAMYLAQKPTSRIALNL 173
           +   +         K     A+  
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEF 205

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 12  LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQA----NQILEKV 66
                  +G+ K AL      ++   +                G   +A     ++L+  
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTA-ARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 67  PPSRAKTRLSFHLS---------------HKLGD-EKSLMEYHQKLE---DSLEEQLCLA 107
           P    +      L                   GD   ++    + LE      E +   A
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184

Query: 108 SIHFLRCHYQEAIDIYKRIL-LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT 166
                    ++AI   K    L + +  A        YY+L  +++S  +V   L     
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS-TLYYQLGDHELSLSEVRECLKLDQD 243

Query: 167 SRIALNL 173
            +     
Sbjct: 244 HKRCFAH 250

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 7/163 (4%)

Query: 319 FNFAQAKCALGQYKEAEEMF--LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKL 376
                A    GQ  +A   F   +  N      Y + +       S            K 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 377 GD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKDLLALNV 431
            + +K+ + Y + L+   ++++     A +   R   ++A+ +Y++IL L+  +L A   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127

Query: 432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL 474
            G   Y   +      E     L+     + A      +    
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFT 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.98
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.86
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.86
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.84
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.84
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.84
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.8
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.79
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.79
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.79
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.75
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.74
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.73
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.71
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.68
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.65
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.62
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.55
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.54
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.52
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.48
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.46
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.41
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.4
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.39
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.38
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.36
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.35
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.34
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.29
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.28
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.27
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.24
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.23
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.22
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.19
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.17
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.88
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.86
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.82
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.61
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.21
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.17
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.0
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.94
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.92
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.8
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.73
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.7
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.15
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.01
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.73
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.6
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.42
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.29
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.17
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.6
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.3
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.54
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.51
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.72
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.04
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.07
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.45
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.4
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	88.97
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.93
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.88
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.73
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	88.67
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.54
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.25
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.94
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.98
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.84
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	84.59
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.49

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=8.1e-39  Score=317.37  Aligned_cols=382  Identities=14%  Similarity=0.000  Sum_probs=325.1

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      +.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++....+.                 
T Consensus         3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-----------------   65 (388)
T 1w3b_A            3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-----------------   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------
Confidence            357899999999999999999999999999999999999999999999999988776432221                 


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                               .+..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.|++++..+|++..
T Consensus        66 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  136 (388)
T 1w3b_A           66 ---------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC  136 (388)
T ss_dssp             ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred             ---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence                     12337789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHH
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAV  246 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~  246 (507)
                      ++..++.++...|++++|...++++++     ..|..+.++.++|.++...|++++|+..+++.   .|.++..+...|.
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  211 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN  211 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            999999999999999999999998763     34566789999999999999999999988764   6777777777777


Q ss_pred             HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000        247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC  326 (507)
Q Consensus       247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~  326 (507)
                      ++...|+...+...++++...         .|+...++..+|.++...|++++|+..++++....|+++.++.++|.++.
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            777777665555555555432         23334456678889999999999999999888888888888888999999


Q ss_pred             hhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH
Q psy12000        327 ALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR  406 (507)
Q Consensus       327 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  406 (507)
                      ..|++++|+..|++++...|.+...+                                            ..++.++...
T Consensus       283 ~~g~~~~A~~~~~~al~~~p~~~~~~--------------------------------------------~~l~~~~~~~  318 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLCPTHADSL--------------------------------------------NNLANIKREQ  318 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHH--------------------------------------------HHHHHHHHHc
Confidence            99999999999988875544322111                                            2234566777


Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      |++++|+..|+++++..|+++.++..+|.+|.+.|++++|+..|+++++++|+++.+++.+|.++..++
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999999877654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=8.9e-35  Score=288.28  Aligned_cols=366  Identities=13%  Similarity=-0.045  Sum_probs=303.7

Q ss_pred             HHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy12000         45 NIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK  124 (507)
Q Consensus        45 ~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~  124 (507)
                      .+|..++..|++++|+..++++....+.+                          +..+..+|.++...|++++|+..++
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l~~~~~~~~~~~~a~~~~~   57 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDN--------------------------TGVLLLLSSIHFQCRRLDRSAHFST   57 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            46888999999999999887654322221                          2225678899999999999999999


Q ss_pred             HHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCC
Q psy12000        125 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLID  204 (507)
Q Consensus       125 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~  204 (507)
                      +++..+|.++.+++.+|.++...|++++|++.|++++..+|++..++..++.++...|++++|...++++++     ..|
T Consensus        58 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p  132 (388)
T 1w3b_A           58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----YNP  132 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----HCT
T ss_pred             HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988753     245


Q ss_pred             ChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch
Q psy12000        205 VIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV  281 (507)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (507)
                      ..+.++..+|.++...|++++|+..+.+.   .|.++..+...|.++...|+...+...++++++.         .|+..
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~  203 (388)
T 1w3b_A          133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---------DPNFL  203 (388)
T ss_dssp             TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------CTTCH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCcH
Confidence            56678899999999999999999988764   6666666766777776666554444444444431         23345


Q ss_pred             hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCc
Q psy12000        282 PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP  361 (507)
Q Consensus       282 ~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  361 (507)
                      .++..+|.++...|++++|+..++++....|++..++.++|.++..+|++++|+..|++++...|.....+         
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------  274 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---------  274 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---------
Confidence            56667888888888888888888888888888877888888888888888888888888876554322111         


Q ss_pred             cchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000        362 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  441 (507)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g  441 (507)
                                                         ..++.++...|++++|+..|+++++..|+++..+..+|.++.+.|
T Consensus       275 -----------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          275 -----------------------------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             -----------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             -----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence                                               234456677799999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      ++++|+..++++++.+|+++.+++.++.++...++.+.|...|++.++..|.+
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999999999999999999999999999999976

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-34  Score=304.13  Aligned_cols=433  Identities=15%  Similarity=0.063  Sum_probs=293.9

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      ...++..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..++++...+...               
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------  150 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS---------------  150 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCH---------------
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccch---------------
Confidence            3457889999999999999999999988855 678899999999999999999999885322211               


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----------------CchhHHHHHHHHHHHhcCCHHH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH----------------KDLLALNVYGAMCYYKLDYYDV  152 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~  152 (507)
                                  ..+..+|.+|...|++++|+..|+++....                |.+..+++.+|.+|.+.|++++
T Consensus       151 ------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          151 ------------ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             ------------HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ------------hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence                        123455666666666666666665432222                2235556666666666666666


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHH--------------------------------------hhhhhhccChHHHHHhhHHH
Q psy12000        153 SQEQVAMYLAQKPTSRIALNLK--------------------------------------ACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       153 A~~~~~~~l~~~p~~~~a~~~~--------------------------------------a~~~~~~~~~~~A~~~l~~~  194 (507)
                      |++.|++++..+|++..++..+                                      +..+.+.|++++|...++.+
T Consensus       219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  298 (597)
T 2xpi_A          219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI  298 (597)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence            6666666666666655543322                                      33444667777787777654


Q ss_pred             HHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHh
Q psy12000        195 LVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLV  271 (507)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~  271 (507)
                      .+     . +..+.++..++..|...|++++|+..+.++   .|.++..+...+.++...|+..       +|..+++.+
T Consensus       299 ~~-----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~  365 (597)
T 2xpi_A          299 NG-----L-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN-------KLYLISNDL  365 (597)
T ss_dssp             TT-----G-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH-------HHHHHHHHH
T ss_pred             hc-----C-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH-------HHHHHHHHH
Confidence            21     1 345567778888888888888888777654   4555555656666666665443       444444332


Q ss_pred             CCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000        272 GSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYV  351 (507)
Q Consensus       272 ~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  351 (507)
                      ..  ..++....+..+|.+|.+.|++++|+.+|+++....|++..++..+|.+|.+.|++++|++.|++++...+.+...
T Consensus       366 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  443 (597)
T 2xpi_A          366 VD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP  443 (597)
T ss_dssp             HH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred             Hh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            21  1123344455678888888888888888888777777777677778888888888888888888776555444333


Q ss_pred             hhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc------CCc
Q psy12000        352 YISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD------HKD  425 (507)
Q Consensus       352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~------~p~  425 (507)
                      +. .++.++...|++++|...+.++...         -...+.....++.++...|++++|+..|+++++.      +|+
T Consensus       444 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~  513 (597)
T 2xpi_A          444 YL-FLGMQHMQLGNILLANEYLQSSYAL---------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK  513 (597)
T ss_dssp             HH-HHHHHHHHHTCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred             HH-HHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence            32 2455666667777776665543210         0011122344566777778888888888888776      555


Q ss_pred             h-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        426 L-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       426 ~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      . ..++..+|.+|.+.|++++|++.++++++.+|+++.++..++.++...++.+.|...|+++++..|.+
T Consensus       514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            4 56777788888888888888888888888888888888888888888888888888888888888876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-33  Score=289.65  Aligned_cols=433  Identities=13%  Similarity=0.049  Sum_probs=337.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.+|.++...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.............+.  ....
T Consensus       118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~  194 (597)
T 2xpi_A          118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL--MQDG  194 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------CCCS
T ss_pred             hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc--cccc
Confidence            45667999999999999999999999765 66788999999999999999999999996532211000000000  0000


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH------------------------
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM------------------------  142 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~------------------------  142 (507)
                      +        ....+..+..+|.+|...|++++|+..|++++..+|++..++..++.                        
T Consensus       195 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  266 (597)
T 2xpi_A          195 G--------IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE  266 (597)
T ss_dssp             S--------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred             c--------cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence            0        00112337789999999999999999999999999998887776643                        


Q ss_pred             --------------HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhH
Q psy12000        143 --------------CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE  208 (507)
Q Consensus       143 --------------~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~  208 (507)
                                    +|.+.|++++|++.|++++.. |.+..+++.++.++.+.|++++|...++++.+     ..|....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~  340 (597)
T 2xpi_A          267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-----IDPYNLD  340 (597)
T ss_dssp             GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCCT
T ss_pred             hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----cCcccHH
Confidence                          455899999999999998877 77788888899999999999999999998763     1234556


Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhh
Q psy12000        209 SRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQ  285 (507)
Q Consensus       209 ~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  285 (507)
                      ++..++.++...|++++|+..+.++   .|.++..+...+.++...|+...+...++++.+.         .+....++.
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~  411 (597)
T 2xpi_A          341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWI  411 (597)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHH
Confidence            7889999999999999999988754   6777777777788887777655444444444331         223445667


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .+|.++...|++++|+++|+++....|++..++..+|.+|.+.|++++|++.|++++...+.+...+. .++.++...|+
T Consensus       412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~  490 (597)
T 2xpi_A          412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN-ELGVVAFNKSD  490 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHhCC
Confidence            89999999999999999999999888988888889999999999999999999999866655544443 35778888888


Q ss_pred             hhHHHHHHHHcCCcHHHHHHHHHhhhc----HHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000        366 TRLSFHLSHKLGDEKSLMEYHQKLEDS----LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  441 (507)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g  441 (507)
                      +++|...+.+....      .......    ......++.++...|++++|+..|+++++.+|+++.++..+|.+|.+.|
T Consensus       491 ~~~A~~~~~~~~~~------~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          491 MQTAINHFQNALLL------VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHHHH------HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh------hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            99888777654211      0000001    1223456778888999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        442 YYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       442 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      ++++|++.++++++++|+++.++..++.++-
T Consensus       565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          565 IPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999999999999999999998888753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-33  Score=285.18  Aligned_cols=384  Identities=13%  Similarity=0.081  Sum_probs=256.6

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+..+.+|.+++..|+|++|+..|+++++.+| ++.+++.+|.++...|++++|+..++++....+..            
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------   72 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY------------   72 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC------------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH------------
Confidence            35667789999999999999999999999999 58899999999999999999999998875422221            


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch--------------------------------
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL--------------------------------  133 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--------------------------------  133 (507)
                                    +..++.+|.++...|++++|+..|++++...|.+                                
T Consensus        73 --------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  138 (514)
T 2gw1_A           73 --------------SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA  138 (514)
T ss_dssp             --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred             --------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          2236778999999999999999999998887632                                


Q ss_pred             -----------------------------------------------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q psy12000        134 -----------------------------------------------LALNVYGAMCYYK---LDYYDVSQEQVAMYLA-  162 (507)
Q Consensus       134 -----------------------------------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-  162 (507)
                                                                     ..+++.+|.+++.   .|++++|+..|++++. 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  218 (514)
T 2gw1_A          139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL  218 (514)
T ss_dssp             ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence                                                           4445555555554   6666666666666665 


Q ss_pred             ----c--CCCc-------HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000        163 ----Q--KPTS-------RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL  229 (507)
Q Consensus       163 ----~--~p~~-------~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  229 (507)
                          .  +|++       ..++..+|.+++..|++++|...++++++     ..|. +.++..+|.++...|++++|+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~  292 (514)
T 2gw1_A          219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-----LFPR-VNSYIYMALIMADRNDSTEYYNY  292 (514)
T ss_dssp             HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-----HCCC-HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred             hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCcc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence                3  3332       33455555555666666666666555432     1122 45556666666666666666555


Q ss_pred             HHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000        230 IKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSS  306 (507)
Q Consensus       230 l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~  306 (507)
                      +.+.   .|.++..+...+.++...|+...+...+++++..         .+....++..+|.++...|++++|+.++++
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  363 (514)
T 2gw1_A          293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL---------DPENIFPYIQLACLAYRENKFDDCETLFSE  363 (514)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT---------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5442   3444444444555555555443333333333221         111222344456666666666666666666


Q ss_pred             hhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHH
Q psy12000        307 IKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYH  386 (507)
Q Consensus       307 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  386 (507)
                      +....|+++.+++.+|.++...|++++|+..|++++...+.+....                                  
T Consensus       364 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------------------------  409 (514)
T 2gw1_A          364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY----------------------------------  409 (514)
T ss_dssp             HHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS----------------------------------
T ss_pred             HHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH----------------------------------
Confidence            6555555555555566666666666666666665543221110000                                  


Q ss_pred             HHhhhcHHHHHHHHHHHHh---HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000        387 QKLEDSLEEQLCLASIHFL---RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       387 ~~l~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a  463 (507)
                          ........++.++..   .|++++|+..|++++...|+++.++..+|.+|.++|++++|+..++++++++|+++.+
T Consensus       410 ----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          410 ----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             ----SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             ----HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence                000022445667788   8999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHh
Q psy12000        464 LNLKAC  469 (507)
Q Consensus       464 ~~~~~~  469 (507)
                      +..+..
T Consensus       486 ~~~~~~  491 (514)
T 2gw1_A          486 LQAITF  491 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=6.3e-32  Score=279.12  Aligned_cols=406  Identities=15%  Similarity=0.101  Sum_probs=247.6

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHH---h
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSH---K   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~---~   82 (507)
                      ...+.+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++....+.. ..++.++.   .
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            4557789999999999999999999999999999999999999999999999999999875433322 12222221   2


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------------------
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----------------------------  134 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------  134 (507)
                      .++.+.+....+.+...|.........+...+...+|+..+++++...|...                            
T Consensus       106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
T 3fp2_A          106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT  185 (537)
T ss_dssp             HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred             cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence            2232222222222221111111111122222222333333333332211100                            


Q ss_pred             ---------HHHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHhhhhhhccChHHHHHh
Q psy12000        135 ---------ALNVYGAMCY--------YKLDYYDVSQEQVAMYLAQKPTSRI-------ALNLKACNTYKLFTSRAAENQ  190 (507)
Q Consensus       135 ---------~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~-------a~~~~a~~~~~~~~~~~A~~~  190 (507)
                               .....++.++        ...|++++|+..+++++..+|+++.       ++..++.++...|++++|...
T Consensus       186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  265 (537)
T 3fp2_A          186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL  265 (537)
T ss_dssp             CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence                     0111111111        1224666677777777766666644       344455555666666666666


Q ss_pred             hHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000        191 LKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL  267 (507)
Q Consensus       191 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  267 (507)
                      ++++++     ..|. +.++..+|.++...|++++|+..+.+.   .|.++..+...|.++...|+...+...++++++.
T Consensus       266 ~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          266 LQESIN-----LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHH-----HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-----cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            666542     1222 456666666666667777666666543   4555555555555555555443333333333321


Q ss_pred             HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000        268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~  347 (507)
                               .++...++..+|.++...|++++|+.+++++....|+++.++.++|.++...|++++|+..|++++...+.
T Consensus       340 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          340 ---------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             ---------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence                     12223345567888888888888888888888888877777778888888888888888888887643321


Q ss_pred             chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH----------hhHHHHHHHHH
Q psy12000        348 NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR----------CHYQEAIDIYK  417 (507)
Q Consensus       348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~----------~~~~~Ai~~~~  417 (507)
                      +...+... +                                     ....++.++...          |++++|+..|+
T Consensus       411 ~~~~~~~~-~-------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          411 QEKIHVGI-G-------------------------------------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             CSSCSSTT-H-------------------------------------HHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             chhhHHHH-H-------------------------------------HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence            11111000 0                                     001223445555          99999999999


Q ss_pred             HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhh
Q psy12000        418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  465 (507)
Q Consensus       418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~  465 (507)
                      ++++.+|+++.++..+|.+|.++|++++|+..|+++++..|+++....
T Consensus       453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            999999999999999999999999999999999999999999998755

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=267.89  Aligned_cols=408  Identities=11%  Similarity=-0.021  Sum_probs=308.0

Q ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHH
Q psy12000         40 EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  119 (507)
Q Consensus        40 ~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A  119 (507)
                      ++.++.+|.+++..|++++|+..|+++....+.                           +..+..+|.++...|++++|
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~la~~~~~~g~~~~A   58 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------------------------PVFYSNLSACYVSVGDLKKV   58 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC---------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc---------------------------HHHHHhHHHHHHHHhhHHHH
Confidence            467899999999999999999999887532221                           22367889999999999999


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhH-------
Q psy12000        120 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK-------  192 (507)
Q Consensus       120 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~-------  192 (507)
                      +..|++++..+|++..+++.+|.++..+|++++|+..|++++..+|.+...................+...+.       
T Consensus        59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  138 (514)
T 2gw1_A           59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA  138 (514)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765432211111111111111111110       


Q ss_pred             ---------------------------HHHHhhCC-------CCCCChhHhHHHHHHHHHh---hccHHHHHHHHHhc--
Q psy12000        193 ---------------------------PILVSILP-------PLIDVIPESRLNLVIYHLK---QEEHQEAFDLIKNL--  233 (507)
Q Consensus       193 ---------------------------~~~~~~~~-------~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~l~~~--  233 (507)
                                                 ... ....       -..+..+.+++.+|..++.   .|++++|+..+.+.  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  217 (514)
T 2gw1_A          139 TPTELSTQPAKERKDKQENLPSVTSMASFF-GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR  217 (514)
T ss_dssp             ------------------CCCCHHHHHHHH-TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred             hhhhccCChhhHHHhhccCCchhHHHHHHH-hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence                                       000 0000       0013457889999998886   99999999888653  


Q ss_pred             --------CCCC-------hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHH
Q psy12000        234 --------EPSV-------PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFK  298 (507)
Q Consensus       234 --------~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  298 (507)
                              .|.+       +..+...|.++...|+.       ++|+.+|+.+...  .++ ..++..+|.++...|+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~  287 (514)
T 2gw1_A          218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP-------LGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDST  287 (514)
T ss_dssp             HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH-------HHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCT
T ss_pred             HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHH
Confidence                    2222       22344455555555544       4555555443221  122 455667899999999999


Q ss_pred             HHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCC
Q psy12000        299 DVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD  378 (507)
Q Consensus       299 ~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  378 (507)
                      +|+.+++++....|++..++..+|.++...|++++|+..|++++...+.+...+ ..++.++...|+++.|...+.+...
T Consensus       288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~  366 (514)
T 2gw1_A          288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY-IQLACLAYRENKFDDCETLFSEAKR  366 (514)
T ss_dssp             TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH-HHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999998888889999999999999999999999986655544333 2357788888888888776655321


Q ss_pred             cHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhh------hHHHHHhhccc---cccchhHHHH
Q psy12000        379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA------LNVYGAMCYYK---LDYYDVSQEQ  449 (507)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~------~~~~la~~y~~---~g~~~~A~~~  449 (507)
                               .....+.....++.++...|++++|+..|++++...|+++.      ++..+|.+|.+   .|++++|+..
T Consensus       367 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~  437 (514)
T 2gw1_A          367 ---------KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL  437 (514)
T ss_dssp             ---------HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred             ---------HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence                     01112223355677888889999999999999999888865      88899999999   9999999999


Q ss_pred             HHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        450 VAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       450 ~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      ++++++.+|+++.++..++.++..+++.+.|...|++.++..|.+.
T Consensus       438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            9999999999999999999999999999999999999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.6e-30  Score=262.49  Aligned_cols=373  Identities=10%  Similarity=0.015  Sum_probs=281.7

Q ss_pred             CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000         21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  100 (507)
Q Consensus        21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  100 (507)
                      ....+...+.+++..+|.++..++.+|.+++..|++++|+..|+++....+.                          .+
T Consensus         7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~   60 (450)
T 2y4t_A            7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------------------------NY   60 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CH
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--------------------------cH
Confidence            3445677888899999999999999999999999999999999876432111                          12


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACN  177 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~~a~~  177 (507)
                      ..++.+|.++...|++++|+..|++++..+|++..++..+|.++..+|++++|++.|++++..+|++.   .++..++.+
T Consensus        61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            33678999999999999999999999999999999999999999999999999999999999999988   655443332


Q ss_pred             hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhc
Q psy12000        178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~  254 (507)
                      ..                           ...+..+|..+...|++++|+..+.++   .|.++..+...+.++...|+.
T Consensus       141 ~~---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  193 (450)
T 2y4t_A          141 DE---------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP  193 (450)
T ss_dssp             HH---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred             HH---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence            11                           123566788888899999998888754   566777777778888888877


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHH------------H
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNF------------A  322 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~l------------g  322 (507)
                      ..+...++++.+..         ++...++..+|.++...|++++|+.+++++....|++..++..+            |
T Consensus       194 ~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          194 RKAISDLKAASKLK---------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             GGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            77777776665532         22344566789999999999999999999988888887665544            8


Q ss_pred             HHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHH
Q psy12000        323 QAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASI  402 (507)
Q Consensus       323 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  402 (507)
                      .++...|++++|+..|++++...+.+.....                                        .....++.+
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------------------------------~~~~~l~~~  304 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKTEPSIAEYTV----------------------------------------RSKERICHC  304 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH----------------------------------------HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchHHHH----------------------------------------HHHHHHHHH
Confidence            8999999999999999988755443211100                                        011334567


Q ss_pred             HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHH------------hh
Q psy12000        403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA------------CN  470 (507)
Q Consensus       403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~------------~~  470 (507)
                      +...|++++|+..+++++..+|+++.++..+|.+|.++|++++|+..++++++++|+++.++..++            ..
T Consensus       305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  384 (450)
T 2y4t_A          305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY  384 (450)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence            777899999999999999999999999999999999999999999999999999999999998888            44


Q ss_pred             hhhcC-----ChHHHHHHHHH-HHHhCCCCc
Q psy12000        471 TYKLF-----TSRAAENQLKP-ILVSAGPRV  495 (507)
Q Consensus       471 ~~~~~-----~~~~~~~~~~~-~~~~~~~~~  495 (507)
                      +..++     ..+.++..|++ .++..|.+.
T Consensus       385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~  415 (450)
T 2y4t_A          385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNF  415 (450)
T ss_dssp             GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred             HHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence            44444     33455666776 667777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=6.7e-31  Score=256.31  Aligned_cols=324  Identities=13%  Similarity=0.029  Sum_probs=251.5

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      +.+..+.+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+.            
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------   69 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------------   69 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------
Confidence            34667889999999999999999999999999999999999999999999999999998876432221            


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHHHH------------HHHHHhcCC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNVYG------------AMCYYKLDY  149 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~  149 (507)
                                    .+..+..+|.++...|++++|+..|++++..+|   +++.++..+            |.++...|+
T Consensus        70 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           70 --------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD  135 (359)
T ss_dssp             --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                          122367789999999999999999999999999   888888777            688888888


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000        150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL  229 (507)
Q Consensus       150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  229 (507)
                      +++|++.+++++..+|+++.++                                       ..+|.++...|++++|+..
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~A~~~  176 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELR---------------------------------------ELRAECFIKEGEPRKAISD  176 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHH---------------------------------------HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHH---------------------------------------HHHHHHHHHCCCHHHHHHH
Confidence            8888888888888888776544                                       4455555566666666655


Q ss_pred             HHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh
Q psy12000        230 IKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS  309 (507)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~  309 (507)
                      +.+....+|.                                        ...++..+|.++...|++++|+..++++..
T Consensus       177 ~~~~~~~~~~----------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          177 LKAASKLKSD----------------------------------------NTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHTTCSC----------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5443211111                                        111233467777777888888888877777


Q ss_pred             hcCCCchHH------------HHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000        310 YYTSDDSFN------------FNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG  377 (507)
Q Consensus       310 ~~~~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  377 (507)
                      ..|++..++            ..+|.++...|++++|+..|++++...+.+.....                        
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------  272 (359)
T 3ieg_A          217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV------------------------  272 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH------------------------
T ss_pred             hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH------------------------
Confidence            777765433            24588899999999999999998765543221110                        


Q ss_pred             CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000        378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  457 (507)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~  457 (507)
                                      .....++.++...|++++|+..|+++++.+|+++.++..+|.+|.++|++++|+..|+++++.+
T Consensus       273 ----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          273 ----------------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                            0012345677778999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhHHHhhhhh
Q psy12000        458 PTSRIALNLKACNTYK  473 (507)
Q Consensus       458 P~~~~a~~~~~~~~~~  473 (507)
                      |+++.+...++.+...
T Consensus       337 p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          337 ENDQQIREGLEKAQRL  352 (359)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999988877776554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4.9e-30  Score=259.01  Aligned_cols=350  Identities=15%  Similarity=0.014  Sum_probs=286.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.              
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------   92 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--------------   92 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------
Confidence            345568999999999999999999999999999999999999999999999999999887432221              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHH------------HHHHHhcCCHH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYG------------AMCYYKLDYYD  151 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~  151 (507)
                                  .+..+..+|.++...|++++|+..|++++..+|++.   .++..+            |.++...|+++
T Consensus        93 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  160 (450)
T 2y4t_A           93 ------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT  160 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence                        122367899999999999999999999999999988   765554            77799999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000        152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       152 ~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~  231 (507)
                      +|+..|++++..+|+++.++..++.++...|++++|...++++.+     ..|..+.++..+|.+|...|++++|+..+.
T Consensus       161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  235 (450)
T 2y4t_A          161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK-----LKNDNTEAFYKISTLYYQLGDHELSLSEVR  235 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-----HHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999998763     235567899999999999999999999987


Q ss_pred             hc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhh
Q psy12000        232 NL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIK  308 (507)
Q Consensus       232 ~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~  308 (507)
                      ++   .|.++..+...+.+              ...                 .....+|.++...|++++|+.+|+++.
T Consensus       236 ~~~~~~p~~~~~~~~~~~~--------------~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~~l  284 (450)
T 2y4t_A          236 ECLKLDQDHKRCFAHYKQV--------------KKL-----------------NKLIESAEELIRDGRYTDATSKYESVM  284 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHH--------------HHH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCCChHHHHHHHHHH--------------HHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            65   45544332211100              000                 112246899999999999999999999


Q ss_pred             hhcCCCch----HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000        309 SYYTSDDS----FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME  384 (507)
Q Consensus       309 ~~~~~~~~----~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  384 (507)
                      ...|+++.    .+..+|.++...|++++|+..|++++...|.+...+                                
T Consensus       285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~--------------------------------  332 (450)
T 2y4t_A          285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL--------------------------------  332 (450)
T ss_dssp             HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH--------------------------------
T ss_pred             hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH--------------------------------
Confidence            99888743    567899999999999999999999876544322111                                


Q ss_pred             HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHH------------hhccccc-----cchhHH
Q psy12000        385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGA------------MCYYKLD-----YYDVSQ  447 (507)
Q Consensus       385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la------------~~y~~~g-----~~~~A~  447 (507)
                                  ..++.++...|++++|+..|+++++.+|+++.++..++            ..|..+|     ..+++.
T Consensus       333 ------------~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~  400 (450)
T 2y4t_A          333 ------------KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII  400 (450)
T ss_dssp             ------------HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred             ------------HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence                        23445667779999999999999999999999988888            6677777     566778


Q ss_pred             HHHHH-HHhcCCCchh
Q psy12000        448 EQVAM-YLAQKPTSRI  462 (507)
Q Consensus       448 ~~~~~-~l~~~P~~~~  462 (507)
                      +.|++ +++.+||+..
T Consensus       401 ~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          401 KAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             HHHHHHHHHSCGGGCC
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            89986 8999999753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.98  E-value=6e-30  Score=260.16  Aligned_cols=395  Identities=13%  Similarity=-0.011  Sum_probs=242.1

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcC---------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHH
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHL---------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSF   77 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~   77 (507)
                      .++..+|.++..+|++++|++.|++++++         +|.....|.++|.+|..+|++++|+.+++++.....      
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~------  125 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE------  125 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH------
Confidence            34556999999999999999999999875         566677899999999999999999999987632100      


Q ss_pred             HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh---cCCHHH
Q psy12000         78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK---LDYYDV  152 (507)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~  152 (507)
                          .......        ...++.+..+|.++..  .++|++|+++|++++..+|++++++..+|.++..   .++.++
T Consensus       126 ----~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~  193 (472)
T 4g1t_A          126 ----KFSSPYR--------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN  193 (472)
T ss_dssp             ----HSCCSSC--------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             ----hcccccc--------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHH
Confidence                0000000        0011223445555444  5689999999999999999999999999988665   567789


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhhhhh----hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000        153 SQEQVAMYLAQKPTSRIALNLKACNTY----KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD  228 (507)
Q Consensus       153 A~~~~~~~l~~~p~~~~a~~~~a~~~~----~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  228 (507)
                      |++.+++++..+|+++.++..++..+.    ..+++++|...++++..     ..|..+.++.++|.+|...|++++|+.
T Consensus       194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~  268 (472)
T 4g1t_A          194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-----KAPGVTDVLRSAAKFYRRKDEPDKAIE  268 (472)
T ss_dssp             THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHcCchHHHHH
Confidence            999999999999999988776665443    34567888888887653     356677899999999999999999999


Q ss_pred             HHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHH
Q psy12000        229 LIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLS  305 (507)
Q Consensus       229 ~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~  305 (507)
                      .+.+.   .|.++..+...|.++...+...       .+      ..           ....+......+.+++|+..++
T Consensus       269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~-------~~------~~-----------~~~~~~~~~~~~~~~~A~~~~~  324 (472)
T 4g1t_A          269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQV-------MN------LR-----------ENGMYGKRKLLELIGHAVAHLK  324 (472)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-------HH------C-----------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHh-------hh------HH-----------HHHHHHHHHHHhhHHHHHHHHH
Confidence            98764   6777766666665554322110       00      00           0011222233445667777777


Q ss_pred             HhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchh---hhhhhhcc-cCccchhhhHHHHHHHHcCCcHH
Q psy12000        306 SIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDY---VYISHLTK-CSPSRAKTRLSFHLSHKLGDEKS  381 (507)
Q Consensus       306 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~  381 (507)
                      ++....|....+++++|.+|..+|++++|+.+|++++...+.+..   .+.. ++. .....+++++|+..|.+...   
T Consensus       325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ai~~y~kal~---  400 (472)
T 4g1t_A          325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR-YGNFQLYQMKCEDKAIHHFIEGVK---  400 (472)
T ss_dssp             HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHH---
T ss_pred             HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHh---
Confidence            777777766666677777777777777777777777654433221   1111 111 11223334444433322100   


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                             +.  +..       ....+....+..++++++..+|+++.++..+|.+|..+|++++|+++|+++|+..|.+|
T Consensus       401 -------i~--~~~-------~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          401 -------IN--QKS-------REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             -------SC--CCC-------HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             -------cC--ccc-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence                   00  000       00012234455667788888888888888889999999999999999999998888888


Q ss_pred             hhhhHHH
Q psy12000        462 IALNLKA  468 (507)
Q Consensus       462 ~a~~~~~  468 (507)
                      .+..-+|
T Consensus       465 ~a~~~~G  471 (472)
T 4g1t_A          465 SASSWNG  471 (472)
T ss_dssp             -------
T ss_pred             cHhhcCC
Confidence            8765443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=3.3e-30  Score=266.26  Aligned_cols=383  Identities=15%  Similarity=0.025  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +.++.+|..++..|++++|+..|++++..+|+++.+++.+|.|+..+|++++|++.+++++..+|+++.++..+|.++..
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHhhHHHHH--------------------------hhCCC---------------------------------
Q psy12000        181 LFTSRAAENQLKPILV--------------------------SILPP---------------------------------  201 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~--------------------------~~~~~---------------------------------  201 (507)
                      .|++++|...++.+..                          +.+..                                 
T Consensus       106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
T 3fp2_A          106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT  185 (537)
T ss_dssp             HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred             cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence            9999999988753200                          00000                                 


Q ss_pred             ---CCCChhHhHHHHHHH--------HHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000        202 ---LIDVIPESRLNLVIY--------HLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL  267 (507)
Q Consensus       202 ---~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  267 (507)
                         ..+........++.+        ....|++++|+..+.++   .|.++..+...+.++..+|......+.+++|+..
T Consensus       186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  265 (537)
T 3fp2_A          186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL  265 (537)
T ss_dssp             CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence               000000011222222        22346899999888765   5666555555555566666555445566777777


Q ss_pred             HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCC
Q psy12000        268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~  347 (507)
                      |+.+...  .++ ..++..+|.++...|++++|+.+++++....|+++.+++.+|.++...|++++|+..|++++...+.
T Consensus       266 ~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  342 (537)
T 3fp2_A          266 LQESINL--HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE  342 (537)
T ss_dssp             HHHHHHH--CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhc--CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence            7654322  222 4456679999999999999999999999999999889999999999999999999999999866554


Q ss_pred             chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh
Q psy12000        348 NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL  427 (507)
Q Consensus       348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~  427 (507)
                      +...+. .++.++...|+++.|...+.+....         -...+.....++.++...|++++|+..|+++++..|+..
T Consensus       343 ~~~~~~-~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          343 NVYPYI-QLACLLYKQGKFTESEAFFNETKLK---------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             CSHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            443332 3566777778888777665543110         111222335567788888999999999999998877765


Q ss_pred             hh------HHHHHhhcccc----------ccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000        428 AL------NVYGAMCYYKL----------DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA  491 (507)
Q Consensus       428 ~~------~~~la~~y~~~----------g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (507)
                      ..      ...+|.+|..+          |++++|+..++++++.+|+++.++..+|.+++.+++.+.|...|++.++..
T Consensus       413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            43      45567889988          999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q psy12000        492 GPRVR  496 (507)
Q Consensus       492 ~~~~~  496 (507)
                      |....
T Consensus       493 ~~~~~  497 (537)
T 3fp2_A          493 RTMDE  497 (537)
T ss_dssp             --CHH
T ss_pred             CCcHH
Confidence            98743

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=3.8e-29  Score=243.84  Aligned_cols=319  Identities=12%  Similarity=0.047  Sum_probs=257.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +.++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|+++.++..+|.++..
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK   83 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCC---ChhHhHHHH------------HHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLID---VIPESRLNL------------VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA  245 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~  245 (507)
                      .|++++|...++++.     ...|   ..+.++..+            |.++...|++++|+..+.+.            
T Consensus        84 ~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------  146 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI------------  146 (359)
T ss_dssp             HTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred             cCChHHHHHHHHHHH-----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH------------
Confidence            999999998888764     2344   455566555            34455555555555444332            


Q ss_pred             HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000        246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK  325 (507)
Q Consensus       246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~  325 (507)
                                         .+.         .|+...++..+|.++...|++++|+.+++++....|+++.+++.+|.++
T Consensus       147 -------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          147 -------------------LEV---------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             -------------------HHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             -------------------HHh---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                               110         1122234456889999999999999999999988898888888999999


Q ss_pred             HhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh
Q psy12000        326 CALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL  405 (507)
Q Consensus       326 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  405 (507)
                      ...|++++|+..|++++...+.....+.                  .+..             +. .......++.++..
T Consensus       199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------~~~~-------------~~-~~~~~~~~a~~~~~  246 (359)
T 3ieg_A          199 YQLGDHELSLSEVRECLKLDQDHKRCFA------------------HYKQ-------------VK-KLNKLIESAEELIR  246 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHH------------------HHHH-------------HH-HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCccchHHHH------------------HHHH-------------HH-HHHHHHHHHHHHHH
Confidence            9999999999999998765543322211                  0000             00 01112345667788


Q ss_pred             HhhHHHHHHHHHHHhhcCCchhh----hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHH
Q psy12000        406 RCHYQEAIDIYKRILLDHKDLLA----LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE  481 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~~~----~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~  481 (507)
                      .|++++|+..|+++++..|+++.    ++..+|.+|.++|++++|+..++++++.+|+++.++..+|.+++.+++.+.|.
T Consensus       247 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  326 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI  326 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            89999999999999999999874    35578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcc
Q psy12000        482 NQLKPILVSAGPRVR  496 (507)
Q Consensus       482 ~~~~~~~~~~~~~~~  496 (507)
                      ..|+..++..|.+..
T Consensus       327 ~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          327 QDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHHHHHHTTCTTCHH
T ss_pred             HHHHHHHhcCCCChH
Confidence            999999999998754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=228.99  Aligned_cols=291  Identities=11%  Similarity=0.030  Sum_probs=243.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      ..+.+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..+++++..+|+++.++..++.++...
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV  103 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        182 F-TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       182 ~-~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                      | ++++|...+++++     ...|..+.++..+|.++...|++++|+..+.+.....|                      
T Consensus       104 ~~~~~~A~~~~~~a~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------------  156 (330)
T 3hym_B          104 GHKNEHARRYLSKAT-----TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK----------------------  156 (330)
T ss_dssp             CSCHHHHHHHHHHHH-----TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----------------------
T ss_pred             hhhHHHHHHHHHHHH-----HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----------------------
Confidence            9 8999999888775     24455678899999999999999999888765311111                      


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                                        +...++..+|.++...|++++|+.+++++....|+++.++..+|.++...|++++|+..|++
T Consensus       157 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  218 (330)
T 3hym_B          157 ------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD  218 (330)
T ss_dssp             ------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                              11122345899999999999999999999999999988999999999999999999999999


Q ss_pred             hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000        341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL  420 (507)
Q Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l  420 (507)
                      ++...+...                            +...       ..........++.++...|++++|+..|++++
T Consensus       219 a~~~~~~~~----------------------------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          219 ALEKIKAIG----------------------------NEVT-------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHHHHTTTS----------------------------CSCT-------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhcc----------------------------cccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            864321100                            0000       00000112345667778899999999999999


Q ss_pred             hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      +..|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..++..+.
T Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=4.5e-26  Score=232.94  Aligned_cols=389  Identities=14%  Similarity=0.047  Sum_probs=239.4

Q ss_pred             cchhhHHHHHHHh----hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hccHHHHHHHHHhCCCCccccchHH
Q psy12000          6 SLTDAWLGYCHFH----LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFY----LGMYLQANQILEKVPPSRAKTRLSF   77 (507)
Q Consensus         6 ~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~   77 (507)
                      .++.+.+|.+|+.    .+++++|+.+|+++++.  .++++++.+|.+|..    .+++++|+.+++++.+.        
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------  108 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--------  108 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------
Confidence            4455666777766    67777777777777654  456667777777776    67777777766654211        


Q ss_pred             HHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCC
Q psy12000         78 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDY  149 (507)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~  149 (507)
                                          ..+..++.+|.+|..    .+++++|+.+|+++...  +++.+++.+|.+|..    .++
T Consensus       109 --------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d  166 (490)
T 2xm6_A          109 --------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD  166 (490)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             --------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence                                112224566677666    66777777777776554  456667777777766    667


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hc
Q psy12000        150 YDVSQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QE  221 (507)
Q Consensus       150 ~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  221 (507)
                      +++|++.|++++..  +++.+...++.++..    .+++++|...+++..+       ...+.+..++|.+|..    .+
T Consensus       167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~  237 (490)
T 2xm6_A          167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQ  237 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCC
Confidence            77777777777654  355666666666655    5666666666666542       1234566666666665    56


Q ss_pred             cHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh-----c
Q psy12000        222 EHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL-----R  295 (507)
Q Consensus       222 ~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~  295 (507)
                      ++++|+..+++. ...++......+.++.. |.  .....+++|+.+|++..+.    ....+...+|.+|...     +
T Consensus       238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~-g~--~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~  310 (490)
T 2xm6_A          238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQ-GL--AGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAK  310 (490)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-TT--TSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CC--CCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcC
Confidence            666666666543 23333333333333322 10  0112334444444433221    1122333455555554     5


Q ss_pred             CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC---CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHH
Q psy12000        296 SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG---QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL  372 (507)
Q Consensus       296 ~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  372 (507)
                      ++++|+.+++++.+.  .++.+.+++|.+|...|   ++++|+.+|+++.+.+.                          
T Consensus       311 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--------------------------  362 (490)
T 2xm6_A          311 NREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--------------------------  362 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred             CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------------------------
Confidence            555555555555433  22334455555555533   55555555555433221                          


Q ss_pred             HHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccch
Q psy12000        373 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYD  444 (507)
Q Consensus       373 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~  444 (507)
                                          ++....++.++..    .+++++|+.+|+++.+..  ++.+.+.+|.+|.+    .++++
T Consensus       363 --------------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          363 --------------------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             --------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             --------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence                                2223445556665    579999999999998854  57788899999998    89999


Q ss_pred             hHHHHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        445 VSQEQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       445 ~A~~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      +|+..|+++++..   |+++.+.+.++.++..  ..+.++...+..++++|++
T Consensus       421 ~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~  471 (490)
T 2xm6_A          421 QAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPE  471 (490)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   4589998888887553  5666776779999998876

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-26  Score=223.21  Aligned_cols=285  Identities=8%  Similarity=-0.028  Sum_probs=233.6

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      ..+..+.+|..++..|+|++|+..|+++++.+|.+..++..++.++...|++++|+..++++....+.            
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------   88 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS------------   88 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------------
Confidence            34567778999999999999999999999999999999999999999999999999998876432221            


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                                    .+..+..+|.++...| ++++|+.+|++++..+|+++.++..+|.++...|++++|++.+++++..
T Consensus        89 --------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           89 --------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             --------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                          1223677899999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL  243 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~  243 (507)
                      +|++..++..++.++...|++++|...++++.     ...|..+.++..+|.++...|++++|+..+.+.          
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------  219 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL-----SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA----------  219 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH----------
Confidence            99988888888888888899999988888764     234556778888888888888888888777543          


Q ss_pred             HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000        244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ  323 (507)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~  323 (507)
                                           +............+....++..+|.++...|++++|+.+++++....|++..+++++|.
T Consensus       220 ---------------------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~  278 (330)
T 3hym_B          220 ---------------------LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY  278 (330)
T ss_dssp             ---------------------HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             ---------------------HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence                                 11111111111112223345678999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHhhcccCCCchhh
Q psy12000        324 AKCALGQYKEAEEMFLLVQNEGLKNDYV  351 (507)
Q Consensus       324 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~  351 (507)
                      ++...|++++|+.+|++++...|.+...
T Consensus       279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (330)
T 3hym_B          279 IHSLMGNFENAVDYFHTALGLRRDDTFS  306 (330)
T ss_dssp             HHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHccCCCchHH
Confidence            9999999999999999998777655433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.9e-27  Score=238.66  Aligned_cols=410  Identities=13%  Similarity=-0.024  Sum_probs=263.4

Q ss_pred             hcCHHHHHHHHHHHh----cCC--CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         19 LGQYKQALGIYETLR----HLP--NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l----~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      .++++.++..+++.+    +..  +.....+..+|.++..+|++++|++.++++.+.....         ......    
T Consensus        24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~---------~~~~~~----   90 (472)
T 4g1t_A           24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE---------HADQAE----   90 (472)
T ss_dssp             TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------SGGGCT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc---------Cccccc----
Confidence            344445555554443    322  2334677889999999999999999998874210000         000000    


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKL--DYYDVSQEQVAMYLA  162 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~  162 (507)
                          ......+.++|.+|..+|++++|+.+|++++.+.|        +.+.++.++|.++...  +++++|++.|++++.
T Consensus        91 ----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           91 ----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             ----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence                00112266899999999999999999999998743        4567888888777664  579999999999999


Q ss_pred             cCCCcHHHHHHHhhhhhhc---cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHh---
Q psy12000        163 QKPTSRIALNLKACNTYKL---FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKN---  232 (507)
Q Consensus       163 ~~p~~~~a~~~~a~~~~~~---~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~---  232 (507)
                      .+|+++.++..++.+.+..   ++.++|...++++++     ..|..+.++.++|..+..    .|++++|...+++   
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~  241 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE  241 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9999999888777776554   456777777776642     356667778778766544    5778889888875   


Q ss_pred             cCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC
Q psy12000        233 LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT  312 (507)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~  312 (507)
                      ..|..+..+...|.++...|+...+...+++|++.         .|+...++..+|.+|..++....+..          
T Consensus       242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~----------  302 (472)
T 4g1t_A          242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLR----------  302 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHH----------
Confidence            47888887878888888888776666666665542         23344455667877754332222111          


Q ss_pred             CCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC---CcH-HHHHHHHH
Q psy12000        313 SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG---DEK-SLMEYHQK  388 (507)
Q Consensus       313 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~~~  388 (507)
                           ....+......+.+++|+..|++++..++.....+. .+|.++...|++++|...+.+..   ..+ .....+  
T Consensus       303 -----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~--  374 (472)
T 4g1t_A          303 -----ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS-ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH--  374 (472)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH-HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH--
T ss_pred             -----HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh-hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH--
Confidence                 112333344456789999999999866554433332 35778888899999988776642   111 111111  


Q ss_pred             hhhcHHHHHHHHHH-HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        389 LEDSLEEQLCLASI-HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       389 l~~~~~~~~~l~~~-~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                              ..++.+ .+..|++++|+..|+++++..|++....          +..+.+...++++++.+|+++.+++.+
T Consensus       375 --------~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~~~~~~~~L  436 (472)
T 4g1t_A          375 --------LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKNGADSEALHVL  436 (472)
T ss_dssp             --------HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred             --------HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                    223333 3456899999999999999999876532          234566778889999999999999999


Q ss_pred             HhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        468 ACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      |.++...++.+.|..-|++.++..|.+.
T Consensus       437 G~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          437 AFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHHHHHHCC-----------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999887653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=9.4e-27  Score=228.31  Aligned_cols=310  Identities=13%  Similarity=0.003  Sum_probs=206.7

Q ss_pred             HHHhhcCHHHHHH-HHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         15 CHFHLGQYKQALG-IYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        15 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      ++...|+|++|+. .|+++++..|.++    ..++.+|.++...|++++|+..++++....+..                
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------   97 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----------------   97 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------------
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------
Confidence            5666677777777 7777777666653    456677777777777777777776654322211                


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                                +..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|++.+++++..+|++..
T Consensus        98 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  167 (368)
T 1fch_A           98 ----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  167 (368)
T ss_dssp             ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence                      1224566777777777777777777777777777777777777777777777777777777777776654


Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQV  249 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~  249 (507)
                      .+...+.+       ...                .........++.++ ..|++++|+..+.+....+|.          
T Consensus       168 ~~~~~~~~-------~~~----------------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~----------  213 (368)
T 1fch_A          168 LVTPAEEG-------AGG----------------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT----------  213 (368)
T ss_dssp             GCC--------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT----------
T ss_pred             HHHHHHHH-------hhh----------------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC----------
Confidence            32211000       000                00011222455555 777888887776543111110          


Q ss_pred             HhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000        250 TIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG  329 (507)
Q Consensus       250 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g  329 (507)
                                                 . .....+..+|.++...|++++|+.+++++....|+++.+++++|.++...|
T Consensus       214 ---------------------------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          214 ---------------------------S-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             ---------------------------S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             ---------------------------c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence                                       0 012234468999999999999999999999999998888999999999999


Q ss_pred             CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhH
Q psy12000        330 QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY  409 (507)
Q Consensus       330 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  409 (507)
                      ++++|+..|++++...+.....                                            ...++.++...|++
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~--------------------------------------------~~~l~~~~~~~g~~  301 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRS--------------------------------------------RYNLGISCINLGAH  301 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHH--------------------------------------------HHHHHHHHHHCCCH
Confidence            9999999999987654432211                                            12345677778999


Q ss_pred             HHHHHHHHHHhhcCCch-----------hhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        410 QEAIDIYKRILLDHKDL-----------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       410 ~~Ai~~~~~~l~~~p~~-----------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      ++|+..|++++...|++           ..++..+|.+|.++|++++|..+++++++.
T Consensus       302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            99999999999988887           788999999999999999999998877664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=1e-26  Score=228.05  Aligned_cols=329  Identities=11%  Similarity=0.044  Sum_probs=224.7

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHH-HHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQ-ILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE   97 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (507)
                      .+.++.+...++.+.+..|.          ++...|+|++|+. .++++....+.+..                      
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~----------------------   61 (368)
T 1fch_A           14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPL----------------------   61 (368)
T ss_dssp             ------------------------------------------CHHHHCCCCCCSSCTT----------------------
T ss_pred             cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcc----------------------
Confidence            34444455555544444432          5666799999999 99987653322200                      


Q ss_pred             hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000         98 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus        98 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      .....++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|++.|++++..+|+++.++..++. 
T Consensus        62 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~-  140 (368)
T 1fch_A           62 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV-  140 (368)
T ss_dssp             TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Confidence            0001156789999999999999999999999999999999999999999999999999999999999988765554444 


Q ss_pred             hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhc
Q psy12000        178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~  254 (507)
                                                            +|...|++++|+..+.+.   .|.++..+...+..       
T Consensus       141 --------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------  175 (368)
T 1fch_A          141 --------------------------------------SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------  175 (368)
T ss_dssp             --------------------------------------HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred             --------------------------------------HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------
Confidence                                                  445555555555555432   23322211110000       


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHH
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYK  332 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~  332 (507)
                             ....           .+..  ....++.++ ..|++++|+.+++++....|+  +..+++++|.++...|+++
T Consensus       176 -------~~~~-----------~~~~--~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~  234 (368)
T 1fch_A          176 -------AGGA-----------GLGP--SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD  234 (368)
T ss_dssp             ------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             -------hhhh-----------cccH--HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence                   0000           0000  011356666 899999999999999999998  6778889999999999999


Q ss_pred             HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000        333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  412 (507)
Q Consensus       333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A  412 (507)
                      +|+..|++++...+.+...+                                            ..++.++...|++++|
T Consensus       235 ~A~~~~~~al~~~~~~~~~~--------------------------------------------~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          235 KAVDCFTAALSVRPNDYLLW--------------------------------------------NKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHH--------------------------------------------HHHHHHHHHcCCHHHH
Confidence            99999999876544322111                                            2345567778999999


Q ss_pred             HHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc-----------hhhhhHHHhhhhhcCChHHHH
Q psy12000        413 IDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS-----------RIALNLKACNTYKLFTSRAAE  481 (507)
Q Consensus       413 i~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~-----------~~a~~~~~~~~~~~~~~~~~~  481 (507)
                      +..|++++...|+++.++..+|.+|.++|++++|+..+++++++.|++           +.++..++.++..++..+.|.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            999999999999999999999999999999999999999999999998           889999999999999999988


Q ss_pred             HHHHHHHHh
Q psy12000        482 NQLKPILVS  490 (507)
Q Consensus       482 ~~~~~~~~~  490 (507)
                      +.++.-++.
T Consensus       351 ~~~~~~l~~  359 (368)
T 1fch_A          351 AADARDLST  359 (368)
T ss_dssp             HHHTTCHHH
T ss_pred             HhHHHHHHH
Confidence            866654443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=5e-25  Score=216.09  Aligned_cols=275  Identities=11%  Similarity=0.007  Sum_probs=209.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+|..+...|++++|+.+|++++..+|+++.+++.+|.++...|++++|++.|++++..+|++..++           
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------  136 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL-----------  136 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------
Confidence            778999999999999999999999999999999999999999999999999999999999999876544           


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                                                  .++|.+|...|++++|+..+.+.....|....    ....++          
T Consensus       137 ----------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~----------  174 (365)
T 4eqf_A          137 ----------------------------MALAVSYTNTSHQQDACEALKNWIKQNPKYKY----LVKNKK----------  174 (365)
T ss_dssp             ----------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC----C---------------
T ss_pred             ----------------------------HHHHHHHHccccHHHHHHHHHHHHHhCccchH----HHhhhc----------
Confidence                                        45556666666777776666554222222100    000000          


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                                      ........+|.++...|++++|+.+++++....|+  ++.+++++|.++..+|++++|+..|++
T Consensus       175 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  238 (365)
T 4eqf_A          175 ----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA  238 (365)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                            00001224688999999999999999999999998  778889999999999999999999999


Q ss_pred             hcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q psy12000        341 VQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL  420 (507)
Q Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l  420 (507)
                      ++...|.+...+                                            ..++.++...|++++|+..|++++
T Consensus       239 al~~~p~~~~~~--------------------------------------------~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          239 ALTVRPEDYSLW--------------------------------------------NRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            876554332111                                            234557777899999999999999


Q ss_pred             hcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC------------chhhhhHHHhhhhhcCChHHHHHHHHHHH
Q psy12000        421 LDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT------------SRIALNLKACNTYKLFTSRAAENQLKPIL  488 (507)
Q Consensus       421 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  488 (507)
                      +.+|+++.++..+|.+|.++|++++|+..|++++++.|+            +..++..++.++..++..+.+++    +.
T Consensus       275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~  350 (365)
T 4eqf_A          275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA----AN  350 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH----HH
T ss_pred             hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH----HH
Confidence            999999999999999999999999999999999999988            36677888888887776665555    44


Q ss_pred             HhCCCC
Q psy12000        489 VSAGPR  494 (507)
Q Consensus       489 ~~~~~~  494 (507)
                      +.+|+.
T Consensus       351 ~~~l~~  356 (365)
T 4eqf_A          351 LGDLDV  356 (365)
T ss_dssp             TTCCGG
T ss_pred             HhhHHH
Confidence            445543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=8.9e-25  Score=210.17  Aligned_cols=281  Identities=10%  Similarity=0.022  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+|..+...|++++|+.+|++++..+|++..++..+|.++...|++++|++.+++++..+|++..++..         
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------   94 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA---------   94 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH---------
Confidence            67899999999999999999999999999999999999999999999999999999999999987755444         


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                                                    +|.++...|++++|+..+.+.   .|.++..+......            
T Consensus        95 ------------------------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------  132 (327)
T 3cv0_A           95 ------------------------------LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA------------  132 (327)
T ss_dssp             ------------------------------HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred             ------------------------------HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH------------
Confidence                                          444555555555555555443   22222111100000            


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHH-HH-HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCM-AS-SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEM  337 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l-a~-~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  337 (507)
                                 .      ++.. ....+ +. ++...|++++|+.+++++....|++..++..+|.++...|++++|+..
T Consensus       133 -----------~------~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  194 (327)
T 3cv0_A          133 -----------D------VDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN  194 (327)
T ss_dssp             -------------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----------H------HHHH-HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence                       0      0000 00123 33 478889999999999999999998888889999999999999999999


Q ss_pred             HHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy12000        338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK  417 (507)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~  417 (507)
                      |++++...+.+...                                            ...++.++...|++++|+..|+
T Consensus       195 ~~~~~~~~~~~~~~--------------------------------------------~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          195 LRRAVELRPDDAQL--------------------------------------------WNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHH
Confidence            99987554332111                                            1233456677799999999999


Q ss_pred             HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC------------chhhhhHHHhhhhhcCChHHHHHHHH
Q psy12000        418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT------------SRIALNLKACNTYKLFTSRAAENQLK  485 (507)
Q Consensus       418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~------------~~~a~~~~~~~~~~~~~~~~~~~~~~  485 (507)
                      ++++..|+++.++..+|.+|.++|++++|+..++++++..|+            ++.++..++.++..+++.+.|.+.++
T Consensus       231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999            88999999999999999999999888


Q ss_pred             HHHHhCCCCcc
Q psy12000        486 PILVSAGPRVR  496 (507)
Q Consensus       486 ~~~~~~~~~~~  496 (507)
                      ..++..|....
T Consensus       311 ~~l~~~~~~~~  321 (327)
T 3cv0_A          311 QNVEPFAKEFG  321 (327)
T ss_dssp             CCSHHHHHHTT
T ss_pred             HHHHhcchhhh
Confidence            88877766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=1.3e-24  Score=213.17  Aligned_cols=263  Identities=10%  Similarity=-0.068  Sum_probs=169.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+.               
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------  131 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN---------------  131 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------
Confidence            35667777777777777777777777777777777777777777777777777777765321111               


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH----------HHHHHhcCCHHHHHHHH
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG----------AMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~  157 (507)
                                 .+..+..+|.++...|++++|+.+|++++..+|++..++..+          |.++...|++++|++.+
T Consensus       132 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (365)
T 4eqf_A          132 -----------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY  200 (365)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence                       112255677777777777777777777777777665555444          77777777777777777


Q ss_pred             HHHHhcCCC--cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC
Q psy12000        158 AMYLAQKPT--SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP  235 (507)
Q Consensus       158 ~~~l~~~p~--~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~  235 (507)
                      ++++..+|+  ++.++..+|.++...|++++|+..++++++     ..|..+.++.++|.+|...|++++|+..+++.  
T Consensus       201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--  273 (365)
T 4eqf_A          201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-----VRPEDYSLWNRLGATLANGDRSEEAVEAYTRA--  273 (365)
T ss_dssp             HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred             HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence            777777777  666666666666666666666666665542     12334556666666666666666666555432  


Q ss_pred             CChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--
Q psy12000        236 SVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--  313 (507)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--  313 (507)
                                                   ++.         .|+...++..+|.++...|++++|+.+++++....|+  
T Consensus       274 -----------------------------l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          274 -----------------------------LEI---------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             -----------------------------HHH---------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             -----------------------------Hhc---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence                                         110         1112223445777788888888888888877766654  


Q ss_pred             ----------CchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        314 ----------DDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       314 ----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                                ...++..+|.++...|+.+.|.....+.
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             -----------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence                      2455667888888888888887777664

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.92  E-value=3.8e-22  Score=203.82  Aligned_cols=370  Identities=10%  Similarity=-0.037  Sum_probs=284.7

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHh----hccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhc
Q psy12000         24 QALGIYETLRHLPNPPEDTEFNIASCYFY----LGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDS   99 (507)
Q Consensus        24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   99 (507)
                      .++..++++.+  +.++++++.+|.+|..    .+++++|+.+++++.+.                            ..
T Consensus        25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------------------------~~   74 (490)
T 2xm6_A           25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------------------------GY   74 (490)
T ss_dssp             CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------TC
T ss_pred             HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------------------------CC
Confidence            34666666654  6778999999999999    89999999999876321                            11


Q ss_pred             HHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000        100 LEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus       100 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                      +..++.||.+|..    .+++++|+.+|+++...  +++.+.+.+|.+|..    .+++++|++.|+++...  +++.+.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  150 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ  150 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3347789999999    99999999999999875  578889999999999    89999999999999765  577888


Q ss_pred             HHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhc-CCCChHHHH
Q psy12000        172 NLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNL-EPSVPQEYI  242 (507)
Q Consensus       172 ~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~-~~~~~~~~~  242 (507)
                      ..++.++..    .+++++|...++++.+       ...+.++.+||.+|..    .+++++|+..+.+. ...++....
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~  223 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAE-------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQL  223 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence            888888876    6789999999988754       1356889999999998    89999999988764 344555555


Q ss_pred             HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHH
Q psy12000        243 LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFN  318 (507)
Q Consensus       243 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~  318 (507)
                      ..+.++.. |.  .....+++|+.+|++..+..    ...+...+|.+|..    .+++++|+.+|+++.+.  .++.+.
T Consensus       224 ~lg~~y~~-g~--g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~  294 (490)
T 2xm6_A          224 HLADMYYF-GI--GVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ  294 (490)
T ss_dssp             HHHHHHHH-TS--SSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred             HHHHHHHc-CC--CCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence            55555543 11  11235667777776654321    23455567888887    78888888888887654  345567


Q ss_pred             HHHHHHHHhh-----CCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcH
Q psy12000        319 FNFAQAKCAL-----GQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  393 (507)
Q Consensus       319 ~~lg~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  393 (507)
                      +++|.+|...     +++++|+.+|+++.+.++...                                            
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a--------------------------------------------  330 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATA--------------------------------------------  330 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHH--------------------------------------------
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHH--------------------------------------------
Confidence            7788888877     788888888888765432211                                            


Q ss_pred             HHHHHHHHHHHhH---hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhH
Q psy12000        394 EEQLCLASIHFLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNL  466 (507)
Q Consensus       394 ~~~~~l~~~~~~~---~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~  466 (507)
                        ...++.++...   .++++|+.+|+++.+.  +++.+.+.+|.+|..    .+++++|+..|+++++.  +++.+++.
T Consensus       331 --~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  404 (490)
T 2xm6_A          331 --QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ  404 (490)
T ss_dssp             --HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             --HHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence              12233344432   3899999999999986  568889999999999    89999999999999985  57899999


Q ss_pred             HHhhhhh----cCChHHHHHHHHHHHHhCCC
Q psy12000        467 KACNTYK----LFTSRAAENQLKPILVSAGP  493 (507)
Q Consensus       467 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~  493 (507)
                      +|.+++.    ..+...|..-|+..++..|.
T Consensus       405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            9999998    78899999999999998853

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=3.5e-24  Score=205.96  Aligned_cols=266  Identities=13%  Similarity=-0.026  Sum_probs=217.2

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++....+.              
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------   87 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--------------   87 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--------------
Confidence            445778999999999999999999999999999999999999999999999999999876432111              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH--------------HH-HHHhcCCHH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG--------------AM-CYYKLDYYD  151 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~  151 (507)
                                  .+..+..+|.++...|++++|+..|++++..+|++..++..+              +. ++...|+++
T Consensus        88 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           88 ------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHH
T ss_pred             ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence                        122366789999999999999999999999999988877776              66 789999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHH
Q psy12000        152 VSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       152 ~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~  231 (507)
                      +|+..+++++..+|+++.++..++.++...|++++|...++++.+     ..|..+.++..+|.++...|++++|+..+.
T Consensus       156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE-----LRPDDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999998888888888899999999988887653     234556788888888888888888888776


Q ss_pred             hcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000        232 NLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY  311 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~  311 (507)
                      +.....                                        ++...++..+|.++...|++++|+.+++++....
T Consensus       231 ~a~~~~----------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          231 RALDIN----------------------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             HHHHHC----------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcC----------------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            531111                                        1112234468899999999999999999999888


Q ss_pred             CC------------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        312 TS------------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       312 ~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      |+            ...++..+|.++..+|++++|...+++++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88            667888899999999999999999988764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=4.5e-23  Score=193.11  Aligned_cols=263  Identities=11%  Similarity=0.077  Sum_probs=193.3

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ++..+..|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++...+.....          
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------   72 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA----------   72 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC----------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH----------
Confidence            4567889999999999999999999999999999999999999999999999999999987653211110          


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                   ....+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|++.+++++..+|
T Consensus        73 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A           73 -------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             -------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence                         0122678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000        166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA  245 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~  245 (507)
                      +++.++..+|...+..+++++|...++++++                                    +.|.++..+..++
T Consensus       140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------~~p~~~~~~~~~~  183 (272)
T 3u4t_A          140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLE------------------------------------LKPNIYIGYLWRA  183 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------HSTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------hCccchHHHHHHH
Confidence            9887766666233333355555555544331                                    2344444444555


Q ss_pred             HHHHHhhh---ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH
Q psy12000        246 VVQVTIGQ---DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA  322 (507)
Q Consensus       246 ~~~~~~g~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg  322 (507)
                      .++..+++   ...+...++++++.....+... ......++..+|.++...|++++|+.+++++.+.+|+++.+.-.++
T Consensus       184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            55555555   4445555666655543222110 0011234556899999999999999999999999999887776666


Q ss_pred             HHHHhh
Q psy12000        323 QAKCAL  328 (507)
Q Consensus       323 ~~~~~~  328 (507)
                      .+....
T Consensus       263 ~~~~~~  268 (272)
T 3u4t_A          263 MKLEHH  268 (272)
T ss_dssp             ------
T ss_pred             hhhccc
Confidence            654443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=2e-23  Score=195.49  Aligned_cols=250  Identities=18%  Similarity=0.175  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|++.+++++. .|.++.             
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-------------   71 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-------------   71 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence            678899999999999999999999999999999999999999999999999999999988 443321             


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                                            ..+.++..+|.++...|++++|+..+.+....+|                        
T Consensus        72 ----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------------------------  105 (272)
T 3u4t_A           72 ----------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------------------------  105 (272)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------
T ss_pred             ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------------------------
Confidence                                  1234677888999999999999888865311111                        


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                                      +...++..+|.++...|++++|+.+++++....|+++.+++++|...+..+++++|+..|++++
T Consensus       106 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  169 (272)
T 3u4t_A          106 ----------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL  169 (272)
T ss_dssp             ----------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1122344689999999999999999999999999998889999944445569999999999988


Q ss_pred             ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh---HHHHHHHHHHH
Q psy12000        343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH---YQEAIDIYKRI  419 (507)
Q Consensus       343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---~~~Ai~~~~~~  419 (507)
                      ...|.+...+                                            ..++.++...++   +++|+..|+++
T Consensus       170 ~~~p~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          170 ELKPNIYIGY--------------------------------------------LWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHSTTCHHHH--------------------------------------------HHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HhCccchHHH--------------------------------------------HHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            6654432111                                            112334444455   78888888888


Q ss_pred             hhcC---Cc-----hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        420 LLDH---KD-----LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       420 l~~~---p~-----~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      ++..   |+     ...++..+|.+|.++|++++|++.++++++++|+++.+...++.+.-
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            8654   44     23577889999999999999999999999999999999887766543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=2e-23  Score=204.66  Aligned_cols=250  Identities=6%  Similarity=-0.077  Sum_probs=199.7

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc-HHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM-YLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+...+|.++...|++++|+..|+++++.+|++..+|+++|.++..+|+ +++|+..++++....+.+            
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------------  165 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------------  165 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------------
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------------
Confidence            4556689999999999999999999999999999999999999999997 999999998875432221            


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                    +..+..+|.++...|++++|+..|+++|..+|++..+++++|.++..+|++++|+..+++++..+|
T Consensus       166 --------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          166 --------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV  231 (382)
T ss_dssp             --------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence                          233778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhh-ccChHHHH-----HhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc--cHHHHHHHHHhcCCCC
Q psy12000        166 TSRIALNLKACNTYK-LFTSRAAE-----NQLKPILVSILPPLIDVIPESRLNLVIYHLKQE--EHQEAFDLIKNLEPSV  237 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~-~~~~~~A~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~l~~~~~~~  237 (507)
                      ++..+++.++.++.. .|..++|.     ..+++++.     ..|..+.+|.+++.++...|  ++++|++.+.++ ..+
T Consensus       232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~-----l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~  305 (382)
T 2h6f_A          232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-----LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS  305 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred             CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence            999999999998888 45547763     55555442     34556677777777777766  567776666544 222


Q ss_pred             hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc---------CHHHHHHHHHHh-
Q psy12000        238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR---------SFKDVILYLSSI-  307 (507)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~Ai~~~~~~-  307 (507)
                      |                                        +...++..+|.+|..+|         .+++|+++++++ 
T Consensus       306 p----------------------------------------~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~  345 (382)
T 2h6f_A          306 H----------------------------------------SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA  345 (382)
T ss_dssp             C----------------------------------------CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             C----------------------------------------CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            1                                        22223335666776653         258899999998 


Q ss_pred             hhhcCCCchHHHHHHHHHHhh
Q psy12000        308 KSYYTSDDSFNFNFAQAKCAL  328 (507)
Q Consensus       308 ~~~~~~~~~~~~~lg~~~~~~  328 (507)
                      .+.+|....++..++.++..+
T Consensus       346 ~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          346 KEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHH
Confidence            788888877777788776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.91  E-value=6.3e-21  Score=196.75  Aligned_cols=415  Identities=9%  Similarity=-0.047  Sum_probs=257.6

Q ss_pred             CccchhhHH--HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000          4 ADSLTDAWL--GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus         4 ~~~~~~~~l--g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      .|.+...|+  +. +...|++++|...|+++++.+|.+..+|..++......|++++|...|+++....+...++...+.
T Consensus         9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~   87 (530)
T 2ooe_A            9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS   87 (530)
T ss_dssp             CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            455666664  44 356899999999999999999999999999999999999999999999999875553333222221


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH----HHHHHHHh---CCchhHHHHHHHHHHHh--------
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID----IYKRILLD---HKDLLALNVYGAMCYYK--------  146 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~--------  146 (507)
                                                .+....|++++|.+    .|++++..   +|++..++...+.....        
T Consensus        88 --------------------------~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~  141 (530)
T 2ooe_A           88 --------------------------YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYA  141 (530)
T ss_dssp             --------------------------HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTT
T ss_pred             --------------------------HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHH
Confidence                                      11122233333332    44444433   23334444443333322        


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCcHHHHHHHhh---------------hhhhccChHHHHHhhHHHHH--hhCC----CCCC
Q psy12000        147 -LDYYDVSQEQVAMYLAQKPTSRIALNLKAC---------------NTYKLFTSRAAENQLKPILV--SILP----PLID  204 (507)
Q Consensus       147 -~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~---------------~~~~~~~~~~A~~~l~~~~~--~~~~----~~~~  204 (507)
                       .|++++|..+|++++. .|...........               +....+++..|...++....  ..+.    ..+|
T Consensus       142 ~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          142 ENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             HHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             HHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence             4555555555555555 3433211110000               00122344455444433210  1111    1122


Q ss_pred             Ch-------hHhHHHHHHHHHh----hcc----HHHHHHHHHh---cCCCChHHHHHHHHHHHH-------hhhccCcHH
Q psy12000        205 VI-------PESRLNLVIYHLK----QEE----HQEAFDLIKN---LEPSVPQEYILKAVVQVT-------IGQDTGSRE  259 (507)
Q Consensus       205 ~~-------~~~~~~l~~~~~~----~~~----~~~A~~~l~~---~~~~~~~~~~~~~~~~~~-------~g~~~~~~~  259 (507)
                      ..       ...|......-..    .++    ..+++..+++   ..|.++..+...+..+..       .|+...+..
T Consensus       221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~  300 (530)
T 2ooe_A          221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL  300 (530)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence            21       1233333222111    112    1344444443   357888888777776654       344321111


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc-hHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD-SFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                      ..++|...|+..... ..|+....+..+|.++...|++++|...|+++...+|+++ .++..+|.++.+.|++++|.+.|
T Consensus       301 ~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  379 (530)
T 2ooe_A          301 FSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  379 (530)
T ss_dssp             HHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            123566666655431 1234455667789999999999999999999999888774 47788999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH-HhHhhHHHHHHHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH-FLRCHYQEAIDIYK  417 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~  417 (507)
                      ++++...+.....+..                                            .+.+. ...|++++|+.+|+
T Consensus       380 ~~Al~~~~~~~~~~~~--------------------------------------------~a~~~~~~~~~~~~A~~~~e  415 (530)
T 2ooe_A          380 KKAREDARTRHHVYVT--------------------------------------------AALMEYYCSKDKSVAFKIFE  415 (530)
T ss_dssp             HHHHTCTTCCTHHHHH--------------------------------------------HHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHhccCCchHHHHH--------------------------------------------HHHHHHHHcCChhHHHHHHH
Confidence            9998654432222110                                            11121 23588999999999


Q ss_pred             HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh----hhhHHHhhhhhc--CChHHHHHHHHHHHHhC
Q psy12000        418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI----ALNLKACNTYKL--FTSRAAENQLKPILVSA  491 (507)
Q Consensus       418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  491 (507)
                      ++++..|+++.++..+|..+.++|+.++|...|+++++..|.+|.    .+.  .++.|+.  ++.+.+...++..++..
T Consensus       416 ~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~--~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          416 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA--RFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH--HHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999888765    332  3344443  45566777888888888


Q ss_pred             CC
Q psy12000        492 GP  493 (507)
Q Consensus       492 ~~  493 (507)
                      |.
T Consensus       494 p~  495 (530)
T 2ooe_A          494 RE  495 (530)
T ss_dssp             HH
T ss_pred             ch
Confidence            84

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2e-23  Score=193.49  Aligned_cols=244  Identities=11%  Similarity=0.049  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+..+|.+++..|++++|+.+|++++..+ +++.+++.+|.++..+|++++|++.+++++..+|++....          
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------   75 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY----------   75 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch----------
Confidence            37789999999999999999999999999 8899999999999999999999999999998776542100          


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV  261 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  261 (507)
                                            +..+.++..+|.++...|++++|+..+.+.....|                       
T Consensus        76 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------------  110 (258)
T 3uq3_A           76 ----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-----------------------  110 (258)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------------
T ss_pred             ----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-----------------------
Confidence                                  01135677889999999999999887764311000                       


Q ss_pred             HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                                               -+.++...|++++|+..++++....|+...+++.+|.++...|++++|+..|+++
T Consensus       111 -------------------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A          111 -------------------------TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------------------------hhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                                     0345667788999999999998888888888899999999999999999999998


Q ss_pred             cccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh
Q psy12000        342 QNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL  421 (507)
Q Consensus       342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~  421 (507)
                      +...+.+...+                                            ..++.++...|++++|+..|+++++
T Consensus       166 ~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          166 IKRAPEDARGY--------------------------------------------SNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCcccHHHH--------------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            76554322111                                            2344567777999999999999999


Q ss_pred             cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC------CCchhhhhHHHhh
Q psy12000        422 DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK------PTSRIALNLKACN  470 (507)
Q Consensus       422 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~~~~~  470 (507)
                      .+|+++.++..+|.+|.++|++++|+..++++++.+      |++..+...+...
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999999999999      8888887766654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=2.7e-22  Score=190.08  Aligned_cols=264  Identities=9%  Similarity=0.014  Sum_probs=197.8

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHH
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRA  186 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~  186 (507)
                      .-.+..|+|.+|+..++++...+|++ .++...++.+|+.+|++++|+..++.   .+|....++..++..+...++.+.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence            34577899999999999988888877 46878889999999999999987765   255555566677777777777888


Q ss_pred             HHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHH
Q psy12000        187 AENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQA  266 (507)
Q Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  266 (507)
                      |+..+++++.   ....|..+.+++.+|.++...|++++|+..+.+  |.++.                           
T Consensus        84 A~~~l~~ll~---~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~---------------------------  131 (291)
T 3mkr_A           84 IVAELDREMS---RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE---------------------------  131 (291)
T ss_dssp             HHHHHHHHHH---SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH---------------------------
T ss_pred             HHHHHHHHHh---cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH---------------------------
Confidence            8887776542   112455667788888888888888888888765  33322                           


Q ss_pred             HHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHhhCCHHHHHHHHHhhccc
Q psy12000        267 LFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFA--QAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                                      ++..+|.++..+|++++|+..++++....|++....+..+  ..+...|++++|+..|++++..
T Consensus       132 ----------------~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~  195 (291)
T 3mkr_A          132 ----------------CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK  195 (291)
T ss_dssp             ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence                            2234678888899999999999998888877643322223  2333458899999999988765


Q ss_pred             CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCC
Q psy12000        345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK  424 (507)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p  424 (507)
                      .|.+...+                                            ..++.++...|++++|+..|++++..+|
T Consensus       196 ~p~~~~~~--------------------------------------------~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          196 CSPTLLLL--------------------------------------------NGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             SCCCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            54332211                                            2234566677899999999999999999


Q ss_pred             chhhhHHHHHhhccccccchh-HHHHHHHHHhcCCCchhhhhH
Q psy12000        425 DLLALNVYGAMCYYKLDYYDV-SQEQVAMYLAQKPTSRIALNL  466 (507)
Q Consensus       425 ~~~~~~~~la~~y~~~g~~~~-A~~~~~~~l~~~P~~~~a~~~  466 (507)
                      +++.++.++|.++..+|++++ +..+++++++.+|+++.+..+
T Consensus       232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            999999999999999999976 467889999999999987653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=8.1e-23  Score=200.32  Aligned_cols=245  Identities=7%  Similarity=0.016  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      .+..+|.++...|++++|+..|+++|..+|++..+++++|.++..+|+ +++|+..|++++..+|++..+++.+|     
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g-----  173 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR-----  173 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence            378899999999999999999999999999999999999999999997 99999999999999999886555444     


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCc
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGS  257 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~  257 (507)
                                                        .++...|++++|+..+++.   +|.+                    
T Consensus       174 ----------------------------------~~~~~~g~~~eAl~~~~kal~ldP~~--------------------  199 (382)
T 2h6f_A          174 ----------------------------------VLVEWLRDPSQELEFIADILNQDAKN--------------------  199 (382)
T ss_dssp             ----------------------------------HHHHHHTCCTTHHHHHHHHHHHCTTC--------------------
T ss_pred             ----------------------------------HHHHHccCHHHHHHHHHHHHHhCccC--------------------
Confidence                                              4444555555555444332   2332                    


Q ss_pred             HHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh-hCCHHHH--
Q psy12000        258 REMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA-LGQYKEA--  334 (507)
Q Consensus       258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A--  334 (507)
                                             ..++..+|.++...|++++|+.++++++..+|++..+++++|.++.. .|.+++|  
T Consensus       200 -----------------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~  256 (382)
T 2h6f_A          200 -----------------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  256 (382)
T ss_dssp             -----------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             -----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence                                   23445678899999999999999999999999999999999999999 5665888  


Q ss_pred             ---HHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh--hH
Q psy12000        335 ---EEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC--HY  409 (507)
Q Consensus       335 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~--~~  409 (507)
                         +++|++++..+|.+...|                                            ..++.++...|  ++
T Consensus       257 ~~el~~~~~Al~l~P~~~~a~--------------------------------------------~~l~~ll~~~g~~~~  292 (382)
T 2h6f_A          257 EREVQYTLEMIKLVPHNESAW--------------------------------------------NYLKGILQDRGLSKY  292 (382)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHH--------------------------------------------HHHHHHHTTTCGGGC
T ss_pred             HHHHHHHHHHHHHCCCCHHHH--------------------------------------------HHHHHHHHccCccch
Confidence               588999886665443222                                            11222333334  68


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHHHHhhccccc---------cchhHHHHHHHH-HhcCCCchhhhhHHHhhhhh
Q psy12000        410 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLD---------YYDVSQEQVAMY-LAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       410 ~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g---------~~~~A~~~~~~~-l~~~P~~~~a~~~~~~~~~~  473 (507)
                      ++|++.++++ +.+|+++.++..+|.+|.++|         .+++|++.|+++ ++++|.....+..++..+..
T Consensus       293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            9999999998 899999999999999999985         359999999999 99999999999988876654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=9.5e-23  Score=184.65  Aligned_cols=197  Identities=15%  Similarity=0.075  Sum_probs=164.9

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      +..+.+.+|.+++..|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..++++....+..           
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----------   72 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-----------   72 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------
Confidence            445778899999999999999999999999999999999999999999999999999998875432221           


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHH
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLR-----------CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS  153 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  153 (507)
                                     +..+..+|.++...           |++++|+..|+++++.+|+++.+++.+|.++..+|++++|
T Consensus        73 ---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           73 ---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence                           22366788888888           9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        154 QEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       154 ~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      +..|++++..+ +++.++..+|.++...|++++|+..++++++     ..|..+.++.++|.++...|++++|+..+++.
T Consensus       138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALE-----QAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999 8999999999999999999999999998763     35667789999999999999999999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.90  E-value=8.5e-22  Score=195.30  Aligned_cols=323  Identities=13%  Similarity=0.063  Sum_probs=229.0

Q ss_pred             CCCccchh--hHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch
Q psy12000          2 GNADSLTD--AWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL   75 (507)
Q Consensus         2 ~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~   75 (507)
                      |+.+..+.  +..|.+++..|++++|+..|+++++..|.++    .++..+|.+++..|++++|+..++++..       
T Consensus         3 ~~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------   75 (406)
T 3sf4_A            3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-------   75 (406)
T ss_dssp             --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------
Confidence            33444443  5689999999999999999999999999885    5788999999999999999999887632       


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCC
Q psy12000         76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDY  149 (507)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~  149 (507)
                         +....++..          .....+..+|.++...|++++|+..|++++...|..      ..++..+|.++...|+
T Consensus        76 ---~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           76 ---LARTIGDQL----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             ---HHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHhccccH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence               111111110          011226789999999999999999999999987754      4588999999999999


Q ss_pred             --------------------HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHh
Q psy12000        150 --------------------YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPES  209 (507)
Q Consensus       150 --------------------~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~  209 (507)
                                          +++|++.+++++...+..                                 ...+....+
T Consensus       143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~~~  189 (406)
T 3sf4_A          143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---------------------------------GDRAAQGRA  189 (406)
T ss_dssp             TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---------------------------------TCHHHHHHH
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---------------------------------cCcHHHHHH
Confidence                                888888887776432110                                 001112346


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHH
Q psy12000        210 RLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMAS  289 (507)
Q Consensus       210 ~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  289 (507)
                      +.++|.+|...|++++|+..+.+..                               +.......   ......++..+|.
T Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~---~~~~~~~~~~la~  235 (406)
T 3sf4_A          190 FGNLGNTHYLLGNFRDAVIAHEQRL-------------------------------LIAKEFGD---KAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHTBHHHHHHHHHHHH-------------------------------HHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH-------------------------------HHHHhcCC---cHHHHHHHHHHHH
Confidence            7889999999999999988886531                               11111000   0001123456899


Q ss_pred             HHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        290 SFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       290 ~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      ++...|++++|+.+++++....+..      ..++.++|.++...|++++|+.+|++++....                 
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----------------  298 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-----------------  298 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-----------------
Confidence            9999999999999999887665433      45677899999999999999999998753211                 


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC------CchhhhHHHHHhhc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH------KDLLALNVYGAMCY  437 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~------p~~~~~~~~la~~y  437 (507)
                                 +.++......          ....++.++...|++++|+.+|+++++..      |....+...+|.+|
T Consensus       299 -----------~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  357 (406)
T 3sf4_A          299 -----------ELNDRIGEGR----------ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ  357 (406)
T ss_dssp             -----------HTTCHHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----------hcCCcHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence                       1111111001          11345667888899999999999998753      34456788899999


Q ss_pred             cccccchhHHHH
Q psy12000        438 YKLDYYDVSQEQ  449 (507)
Q Consensus       438 ~~~g~~~~A~~~  449 (507)
                      ..+|+...+...
T Consensus       358 ~~~g~~~~~~~~  369 (406)
T 3sf4_A          358 MVLGLSYSTNNS  369 (406)
T ss_dssp             HHHHTTSCC---
T ss_pred             HHhhHhHHHHHH
Confidence            999988655443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.89  E-value=1.3e-21  Score=185.23  Aligned_cols=258  Identities=12%  Similarity=0.064  Sum_probs=191.5

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      -....|..|+|..|+..++++...+|.+. +....++++|+.+|++++|+..++..  .++.                  
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~------------------   64 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPE------------------   64 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHH------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChh------------------
Confidence            34667889999999999999888888773 67789999999999999999877542  1111                  


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD--HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                               ...+..++..+...|++++|++.+++++..  +|+++.+++.+|.++...|++++|++.+++     |++.
T Consensus        65 ---------~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~  130 (291)
T 3mkr_A           65 ---------LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL  130 (291)
T ss_dssp             ---------HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH
T ss_pred             ---------HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH
Confidence                     011446778888889999999999999876  599999999999999999999999999887     7777


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHH--HHHHhhccHHHHHHHHHhcCCCChHHHHHHHH
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLV--IYHLKQEEHQEAFDLIKNLEPSVPQEYILKAV  246 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~  246 (507)
                      .++..++.++.++|+.++|...++++.+.     .|......+..+  .++...|++++|+..++++             
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-------------  192 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-------------  192 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-------------
Confidence            77777777777777777777776665421     111111111111  2222335555555555432             


Q ss_pred             HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000        247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC  326 (507)
Q Consensus       247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~  326 (507)
                                               ...  .|+....+..+|.++...|++++|+..+++++..+|+++.+++++|.++.
T Consensus       193 -------------------------l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          193 -------------------------ADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             -------------------------HHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -------------------------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                     111  12233345568999999999999999999999999999999999999999


Q ss_pred             hhCCHHH-HHHHHHhhcccCCCc
Q psy12000        327 ALGQYKE-AEEMFLLVQNEGLKN  348 (507)
Q Consensus       327 ~~g~~~~-A~~~~~~~~~~~~~~  348 (507)
                      ..|++++ +..++++++..+|.+
T Consensus       246 ~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          246 HLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCCHHHHHHHHHHHHHhCCCC
Confidence            9999976 568888887666544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=8.7e-20  Score=188.18  Aligned_cols=387  Identities=11%  Similarity=-0.051  Sum_probs=267.6

Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHH
Q psy12000         29 YETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS  108 (507)
Q Consensus        29 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~  108 (507)
                      |+++++.+|.+.++|..++.. ...|++++|...++++....|..                          +..+..+|.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~--------------------------~~~w~~~~~   54 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS--------------------------GRFWKLYIE   54 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC--------------------------HHHHHHHHH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC--------------------------HHHHHHHHH
Confidence            678888999999999999984 78999999999999986644432                          122566788


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH-HHHhcCCHHHHHH----HHHHHHh---cCCCcHHHHHHHhhhhhh
Q psy12000        109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM-CYYKLDYYDVSQE----QVAMYLA---QKPTSRIALNLKACNTYK  180 (507)
Q Consensus       109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~~l~---~~p~~~~a~~~~a~~~~~  180 (507)
                      .+...|++++|+.+|++++...| +.+++...+. +....|++++|.+    .|++++.   .+|++...+...+.....
T Consensus        55 ~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~  133 (530)
T 2ooe_A           55 AEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG  133 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence            88899999999999999999999 5677777774 4456788888776    7777765   356666555444443322


Q ss_pred             ---------ccChHHHHHhhHHHHHhhCCCCCCCh-hHhHHHHHHH-------------HHhhccHHHHHHHHHh-----
Q psy12000        181 ---------LFTSRAAENQLKPILVSILPPLIDVI-PESRLNLVIY-------------HLKQEEHQEAFDLIKN-----  232 (507)
Q Consensus       181 ---------~~~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~-------------~~~~~~~~~A~~~l~~-----  232 (507)
                               .|+.+.|...|++++.     .+... ...+...+..             ....++|++|...+..     
T Consensus       134 ~~~~~~~~~~~~~~~a~~~y~~al~-----~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~  208 (530)
T 2ooe_A          134 VEAVGSYAENQRITAVRRVYQRGCV-----NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM  208 (530)
T ss_dssp             SCCCSSTTHHHHHHHHHHHHHHHTT-----SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHhHHHHHHHHHHHHHh-----chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                     5778888888887642     21111 1222222211             1246778888765543     


Q ss_pred             --c-------CCCCh----H-HHHHHHHHHHHhhhc---cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh--
Q psy12000        233 --L-------EPSVP----Q-EYILKAVVQVTIGQD---TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL--  293 (507)
Q Consensus       233 --~-------~~~~~----~-~~~~~~~~~~~~g~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--  293 (507)
                        +       .|...    . .......+....+..   .......+.++..|+.....  .|.....+..+|..+..  
T Consensus       209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~  286 (530)
T 2ooe_A          209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSS  286 (530)
T ss_dssp             HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc
Confidence              1       11110    0 111122222222211   01111122333444332211  22333456667877775  


Q ss_pred             -----hcCHH-------HHHHHHHHhhh-hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch-hhhhhhhccc
Q psy12000        294 -----LRSFK-------DVILYLSSIKS-YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND-YVYISHLTKC  359 (507)
Q Consensus       294 -----~~~~~-------~Ai~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~  359 (507)
                           .|+++       +|+..++++.. ..|++..+++.+|.++...|++++|...|++++..++.+. ..|       
T Consensus       287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------  359 (530)
T 2ooe_A          287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY-------  359 (530)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH-------
T ss_pred             hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH-------
Confidence                 79987       99999999997 7898888899999999999999999999999987654331 122       


Q ss_pred             CccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh-cc
Q psy12000        360 SPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC-YY  438 (507)
Q Consensus       360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~-y~  438 (507)
                                                           ..++.+....|++++|+.+|+++++..|.....+...|.+ +.
T Consensus       360 -------------------------------------~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          360 -------------------------------------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  402 (530)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred             -------------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence                                                 1122334445889999999999999999877766655554 44


Q ss_pred             ccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        439 KLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       439 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      ..|++++|...|+.+++.+|+++.++...+.....+++...|++.|+..+...|.+
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            69999999999999999999999999999999998889999999999999986643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=3.5e-21  Score=194.20  Aligned_cols=382  Identities=14%  Similarity=-0.002  Sum_probs=235.5

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccH---HHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMY---LQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ..+|..++..|++++|++.|+++.+.  .++++++.+|.++...|++   ++|+.+|+++.+..                
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~----------------   68 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS----------------   68 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC----------------
Confidence            56899999999999999999999764  5678999999999999999   89999998886431                


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRC-----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                                   +..++.+|.+++..|     ++++|+.+|++++..  +++.+++.+|.+|...+..+++.+.++.+.
T Consensus        69 -------------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~  133 (452)
T 3e4b_A           69 -------------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQIS  133 (452)
T ss_dssp             ---------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHH
T ss_pred             -------------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence                         112567777665554     899999999999874  445688999999998887666655554444


Q ss_pred             hc-CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc---cHHHHHHHHHhc---C
Q psy12000        162 AQ-KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE---EHQEAFDLIKNL---E  234 (507)
Q Consensus       162 ~~-~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~l~~~---~  234 (507)
                      .. .+.++.+...++.++...+.++.+......+.+...    ...+.++++||.+|...|   ++++|+..+++.   .
T Consensus       134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g  209 (452)
T 3e4b_A          134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG  209 (452)
T ss_dssp             HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence            32 234556777778887777766666555443332211    223458888898888888   888888888764   2


Q ss_pred             CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHH-H--HhhcCHHHHHHHHHHhhhhc
Q psy12000        235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASS-F--FLLRSFKDVILYLSSIKSYY  311 (507)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~Ai~~~~~~~~~~  311 (507)
                      +.....+...|.++.. |.  .....+++|+.+|++..     ++...+...||.+ +  ...+++++|+.+|+++... 
T Consensus       210 ~~~a~~~~~Lg~~y~~-g~--~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-  280 (452)
T 3e4b_A          210 TVTAQRVDSVARVLGD-AT--LGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-  280 (452)
T ss_dssp             CSCHHHHHHHHHHHTC-GG--GSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHHhC-CC--CCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-
Confidence            2222222344444421 11  12245667777776654     2234455667776 3  4577888888877776643 


Q ss_pred             CCCchHHHHHHHHHHhhC-----CHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHH
Q psy12000        312 TSDDSFNFNFAQAKCALG-----QYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYH  386 (507)
Q Consensus       312 ~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  386 (507)
                       .++.+.+++|.+|. .|     ++++|+.+|+++. ++....                                     
T Consensus       281 -g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A-------------------------------------  320 (452)
T 3e4b_A          281 -DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAA-------------------------------------  320 (452)
T ss_dssp             -TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHH-------------------------------------
T ss_pred             -CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHH-------------------------------------
Confidence             35566777887777 55     7888888887776 332111                                     


Q ss_pred             HHhhhcHHHHHHHHHHHHh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCC
Q psy12000        387 QKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKP  458 (507)
Q Consensus       387 ~~l~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P  458 (507)
                               ...+|.++..    ..++++|+.+|+++.+  ++++...+.+|.+|..    ..++++|...|+.+.+..+
T Consensus       321 ---------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          321 ---------DYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             ---------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             ---------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence                     1223333332    2388999999999876  4567788889998874    4588999999999988654


Q ss_pred             CchhhhhHHHhhhhhcCC--hHHHHHHHHHHHHh
Q psy12000        459 TSRIALNLKACNTYKLFT--SRAAENQLKPILVS  490 (507)
Q Consensus       459 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~  490 (507)
                        +.+...++.+.-.+..  ...+++.++.....
T Consensus       390 --~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          390 --PEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             --HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence              4444556666554443  33444455544444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=4.9e-22  Score=179.96  Aligned_cols=195  Identities=18%  Similarity=0.109  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      ..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999988888888887


Q ss_pred             c-----------cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy12000        181 L-----------FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQV  249 (507)
Q Consensus       181 ~-----------~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~  249 (507)
                      .           |++++|+..++++++     ..|..+.++.++|.++..+|++++|+..+++                 
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~-----------------  143 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAER-----VNPRYAPLHLQRGLVYALLGERDKAEASLKQ-----------------  143 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence            7           777777777766542     2445556677777777777777777666643                 


Q ss_pred             HhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC
Q psy12000        250 TIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG  329 (507)
Q Consensus       250 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g  329 (507)
                                    |++.         . +...++..+|.++...|++++|+..++++...+|+++.+++++|.++..+|
T Consensus       144 --------------al~~---------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          144 --------------ALAL---------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG  199 (217)
T ss_dssp             --------------HHHH---------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred             --------------HHhc---------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence                          2221         0 112334568999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhh
Q psy12000        330 QYKEAEEMFLLV  341 (507)
Q Consensus       330 ~~~~A~~~~~~~  341 (507)
                      ++++|+..|+++
T Consensus       200 ~~~~A~~~~~~~  211 (217)
T 2pl2_A          200 KAEEAARAAALE  211 (217)
T ss_dssp             ------------
T ss_pred             CHHHHHHHHHHH
Confidence            999999999876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.88  E-value=3.6e-21  Score=190.76  Aligned_cols=302  Identities=15%  Similarity=0.012  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN  172 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~  172 (507)
                      ++.+|..+...|++++|+.+|++++...|+++    .++..+|.++...|++++|+..+++++..      .|....++.
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   91 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   91 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            56789999999999999999999999999874    67889999999999999999999998765      233344666


Q ss_pred             HHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHHHHHHHhhcc--------------------HHHHHHHH
Q psy12000        173 LKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNLVIYHLKQEE--------------------HQEAFDLI  230 (507)
Q Consensus       173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~l  230 (507)
                      .+|.++...|++++|...++++.+ ....  ..+....++.++|.+|...|+                    +++|+..+
T Consensus        92 ~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           92 NLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            677777778888888777776542 1000  011123456677777777777                    44444333


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000        231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY  310 (507)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~  310 (507)
                                                     ++++.++.....   .+....++..+|.++...|++++|+.+++++...
T Consensus       171 -------------------------------~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (406)
T 3sf4_A          171 -------------------------------EENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  216 (406)
T ss_dssp             -------------------------------HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHhccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence                                           333333332211   1112234557899999999999999999998876


Q ss_pred             cCCCch------HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000        311 YTSDDS------FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME  384 (507)
Q Consensus       311 ~~~~~~------~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  384 (507)
                      .+....      ++.++|.++...|++++|+.+|++++...+                            ..++......
T Consensus       217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~  268 (406)
T 3sf4_A          217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR----------------------------QLKDRAVEAQ  268 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------------hCcCchHHHH
Confidence            554332      778899999999999999999998863221                            0011000000


Q ss_pred             HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcC-
Q psy12000        385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQK-  457 (507)
Q Consensus       385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~-  457 (507)
                                ....++.++...|++++|+..|++++...|..      ..++..+|.+|.++|++++|+..+++++++. 
T Consensus       269 ----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          269 ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                      11335667788899999999999998764433      5577889999999999999999999999874 


Q ss_pred             -----CCchhhhhHHHhhhhhcCCh
Q psy12000        458 -----PTSRIALNLKACNTYKLFTS  477 (507)
Q Consensus       458 -----P~~~~a~~~~~~~~~~~~~~  477 (507)
                           |....++..++.++..++..
T Consensus       339 ~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          339 EVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCcchhHHHHHHHHHHHHhhHh
Confidence                 34456777788888776643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.88  E-value=7.1e-21  Score=189.41  Aligned_cols=287  Identities=12%  Similarity=0.024  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN  172 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~  172 (507)
                      ++.+|..+...|++++|+.+|++++...|+++    .++..+|.++...|++++|+..+++++..      +|....++.
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            66899999999999999999999999999876    57899999999999999999999999876      455556777


Q ss_pred             HHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhcc-----------------HHHHHHHHHhcC
Q psy12000        173 LKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEE-----------------HQEAFDLIKNLE  234 (507)
Q Consensus       173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~l~~~~  234 (507)
                      .+|.++...|++++|...+.+++...- ....+....++.++|.+|...|+                 +++|+..+.   
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~---  207 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ---  207 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH---
Confidence            788888888888888887777643100 01112234567777777777777                 444444443   


Q ss_pred             CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC
Q psy12000        235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD  314 (507)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~  314 (507)
                                                  +++++......   .+....++..+|.++...|++++|+.+++++....+..
T Consensus       208 ----------------------------~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          208 ----------------------------ENLKLMRDLGD---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             ----------------------------HHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence                                        22222222211   11122345578999999999999999999988766543


Q ss_pred             ch------HHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHH
Q psy12000        315 DS------FNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQK  388 (507)
Q Consensus       315 ~~------~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  388 (507)
                      ..      ++.++|.+|..+|++++|+.+|++++...+                            +.++.....     
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~-----  303 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV----------------------------ELGEREVEA-----  303 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----------------------------HcCCHHHHH-----
Confidence            32      678899999999999999999998864221                            011100000     


Q ss_pred             hhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        389 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       389 l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                           .....++.++...|++++|+.+|++++...|+.      ..++..+|.+|.++|++++|+..+++++++.+...
T Consensus       304 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          304 -----QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence                 111345667888899999999999999764433      45788899999999999999999999999886643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.4e-21  Score=175.71  Aligned_cols=235  Identities=15%  Similarity=0.091  Sum_probs=179.2

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      ........+|.+++..|++++|+..|+++++.+ .++.+++.+|.++...|++++|+..++++....+...         
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------   72 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---------
Confidence            345677889999999999999999999999999 8889999999999999999999999988643211110         


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      ....          ..+..+..+|.++...|++++|+..|++++...|+        +.++..+|++++|+..+++++..
T Consensus        73 ~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~  134 (258)
T 3uq3_A           73 ADYK----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYV  134 (258)
T ss_dssp             CCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cchH----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHc
Confidence            0000          00223678999999999999999999999999987        45788889999999999999888


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHH
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYIL  243 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~  243 (507)
                      +|.++.+                                       +..+|.++...|++++|+..+.+....+|.    
T Consensus       135 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----  171 (258)
T 3uq3_A          135 NPEKAEE---------------------------------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----  171 (258)
T ss_dssp             CHHHHHH---------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             CcchHHH---------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----
Confidence            7765544                                       445566666666666666666554211111    


Q ss_pred             HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHH
Q psy12000        244 KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQ  323 (507)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~  323 (507)
                                                          ...++..+|.++...|++++|+.+++++....|+++.+++.+|.
T Consensus       172 ------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  215 (258)
T 3uq3_A          172 ------------------------------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT  215 (258)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ------------------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence                                                01112346788888888888888888888888888878888888


Q ss_pred             HHHhhCCHHHHHHHHHhhcccC
Q psy12000        324 AKCALGQYKEAEEMFLLVQNEG  345 (507)
Q Consensus       324 ~~~~~g~~~~A~~~~~~~~~~~  345 (507)
                      ++..+|++++|+..|++++...
T Consensus       216 ~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          216 AQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC
Confidence            8888888888888888876544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.86  E-value=4.1e-20  Score=177.66  Aligned_cols=285  Identities=15%  Similarity=0.036  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL----LALNVYGAMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALN  172 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~  172 (507)
                      ++..|..+...|++++|+.+|++++...|++    ..++..+|.++...|++++|++.+++++..      .|....++.
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            6678999999999999999999999999987    467889999999999999999999998765      333344566


Q ss_pred             HHhhhhhhccChHHHHHhhHHHHHhhCCCC--CCChhHhHHHHHHHHHhhcc--------------------HHHHHHHH
Q psy12000        173 LKACNTYKLFTSRAAENQLKPILVSILPPL--IDVIPESRLNLVIYHLKQEE--------------------HQEAFDLI  230 (507)
Q Consensus       173 ~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~l  230 (507)
                      .+|.++...|++++|...+.++.+ .....  .+....++..+|.+|...|+                    +++|+..+
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            677777777777777777776542 11111  11123356667777777777                    44444444


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000        231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY  310 (507)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~  310 (507)
                      .                               +++........   .+....++..+|.++...|++++|+.+++++...
T Consensus       167 ~-------------------------------~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  212 (338)
T 3ro2_A          167 E-------------------------------ENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  212 (338)
T ss_dssp             H-------------------------------HHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             H-------------------------------HHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3                               22222222211   1111233456899999999999999999988766


Q ss_pred             cCCCc------hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHH
Q psy12000        311 YTSDD------SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLME  384 (507)
Q Consensus       311 ~~~~~------~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  384 (507)
                      .+...      .++.++|.++...|++++|+.+|++++...+                            ..++......
T Consensus       213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~  264 (338)
T 3ro2_A          213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR----------------------------QLKDRAVEAQ  264 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------hhcchhHHHH
Confidence            44322      3678899999999999999999998763211                            0011000000


Q ss_pred             HHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch------hhhHHHHHhhccccccchhHHHHHHHHHhcCC
Q psy12000        385 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  458 (507)
Q Consensus       385 ~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P  458 (507)
                                ....++.++...|++++|+.++++++...|..      ..++..+|.+|.++|++++|...+++++++.|
T Consensus       265 ----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          265 ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             ----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence                      11335567788899999999999998765443      44777899999999999999999999999877


Q ss_pred             Cc
Q psy12000        459 TS  460 (507)
Q Consensus       459 ~~  460 (507)
                      +.
T Consensus       335 ~~  336 (338)
T 3ro2_A          335 EV  336 (338)
T ss_dssp             --
T ss_pred             hh
Confidence            53

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.86  E-value=6.4e-21  Score=178.54  Aligned_cols=257  Identities=11%  Similarity=0.032  Sum_probs=197.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLP----NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      +.++......|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..++++....+.             
T Consensus         9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------   75 (275)
T 1xnf_A            9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------   75 (275)
T ss_dssp             GGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------
T ss_pred             cceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------------
Confidence            345556677899999999999999974    456688999999999999999999999887532221             


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                   .+..+..+|.++...|++++|+.+|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|
T Consensus        76 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           76 -------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             -------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                         1223678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHH
Q psy12000        166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKA  245 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~  245 (507)
                      ++.......+.. ...|++++|...+.+.... .    +... ....++.+++..+++++|+..+.+.....|...    
T Consensus       143 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----  211 (275)
T 1xnf_A          143 NDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK-S----DKEQ-WGWNIVEFYLGNISEQTLMERLKADATDNTSLA----  211 (275)
T ss_dssp             TCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH-S----CCCS-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH----
T ss_pred             CChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc-C----Ccch-HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc----
Confidence            998765544433 5668888888888766531 1    1111 224567777777888888877776554433210    


Q ss_pred             HHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q psy12000        246 VVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK  325 (507)
Q Consensus       246 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~  325 (507)
                                                      ++....+..+|.++...|++++|+.+++++...+|++..   ..+.++
T Consensus       212 --------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~  256 (275)
T 1xnf_A          212 --------------------------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYAL  256 (275)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHH
T ss_pred             --------------------------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHH
Confidence                                            000123446899999999999999999999999887643   358889


Q ss_pred             HhhCCHHHHHHHH
Q psy12000        326 CALGQYKEAEEMF  338 (507)
Q Consensus       326 ~~~g~~~~A~~~~  338 (507)
                      ...|++++|++.|
T Consensus       257 ~~l~~~~~a~~~~  269 (275)
T 1xnf_A          257 LELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHhhHHHH
Confidence            9999999999988

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.86  E-value=1.1e-20  Score=188.15  Aligned_cols=281  Identities=16%  Similarity=0.060  Sum_probs=200.9

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      .+.+|.+++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+..++++..          ++...+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~~~~~  120 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT----------LAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------HHHHTT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------HHHHcc
Confidence            45589999999999999999999999999987    5789999999999999999999987632          111111


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CCchhHHHHHHHHHHHhcCC---------
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD------HKDLLALNVYGAMCYYKLDY---------  149 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~---------  149 (507)
                      +..          .....+..+|.++...|++++|+.+|++++..      .|....++..+|.++...|+         
T Consensus       121 ~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  190 (411)
T 4a1s_A          121 DRL----------GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK  190 (411)
T ss_dssp             CHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             Cch----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence            100          01123678999999999999999999999998      56677899999999999999         


Q ss_pred             --------HHHHHHHHHHHHhcC------CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHH
Q psy12000        150 --------YDVSQEQVAMYLAQK------PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNL  213 (507)
Q Consensus       150 --------~~~A~~~~~~~l~~~------p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l  213 (507)
                              +++|++.+++++...      |....++..+|.+++..|++++|...+++..+ ....  .......++.++
T Consensus       191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l  269 (411)
T 4a1s_A          191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-IAREFGDRAAERRANSNL  269 (411)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhcCCcHHHHHHHHHH
Confidence                    999999999887542      22223555666677777777777776666542 1000  001112356666


Q ss_pred             HHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh
Q psy12000        214 VIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL  293 (507)
Q Consensus       214 ~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  293 (507)
                      |.+|..+|++++|+..+.+.                               +........   ......++..+|.++..
T Consensus       270 a~~~~~~g~~~~A~~~~~~a-------------------------------l~~~~~~~~---~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          270 GNSHIFLGQFEDAAEHYKRT-------------------------------LALAVELGE---REVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-------------------------------HHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHH-------------------------------HHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence            77777777777776666432                               222211110   00112234468999999


Q ss_pred             hcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        294 LRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       294 ~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      .|++++|+.+++++....+..      ..++..+|.+|..+|++++|+.+|++++..
T Consensus       316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999999999887654322      346778999999999999999999998654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.86  E-value=2.1e-20  Score=179.64  Aligned_cols=284  Identities=15%  Similarity=0.072  Sum_probs=200.7

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      ...+..|.+++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+..++++...          ...
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~   75 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------ART   75 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------hhc
Confidence            3456689999999999999999999999999984    67889999999999999999998876321          111


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCC-------
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDY-------  149 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~-------  149 (507)
                      .++..          .....+..+|.++...|++++|+..|++++...|..      ..++..+|.++...|+       
T Consensus        76 ~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (338)
T 3ro2_A           76 IGDQL----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP  145 (338)
T ss_dssp             HTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             ccccH----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence            11110          011226789999999999999999999999886543      3488899999999999       


Q ss_pred             -------------HHHHHHHHHHHHhc------CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHh
Q psy12000        150 -------------YDVSQEQVAMYLAQ------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPES  209 (507)
Q Consensus       150 -------------~~~A~~~~~~~l~~------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~  209 (507)
                                   +++|++.+++++..      .|....++..++.+++..|++++|...++++.+... ....+....+
T Consensus       146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  225 (338)
T 3ro2_A          146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  225 (338)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                         99999999988754      222233555667777777777777777766542100 0001112235


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHH
Q psy12000        210 RLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMAS  289 (507)
Q Consensus       210 ~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  289 (507)
                      +.++|.++...|++++|+..+.+.                               +........   ......++..+|.
T Consensus       226 ~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~~~~~~~~---~~~~~~~~~~la~  271 (338)
T 3ro2_A          226 YSNLGNAYIFLGEFETASEYYKKT-------------------------------LLLARQLKD---RAVEAQSCYSLGN  271 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHH-------------------------------HHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHHHHhhcc---hhHHHHHHHHHHH
Confidence            666777777777777776666542                               222211110   0011223446899


Q ss_pred             HHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        290 SFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       290 ~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                      ++...|++++|+.+++++....+..      ..++..+|.+|...|++++|..+|++++..
T Consensus       272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999887654322      346678999999999999999999998653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.86  E-value=1.6e-20  Score=172.27  Aligned_cols=212  Identities=9%  Similarity=0.005  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      ++.+|..+...|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++..+|++..++           
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------   94 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY-----------   94 (243)
T ss_dssp             ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH-----------
Confidence            678899999999999999999999999999999999999999999999999999888887776544221           


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                                                  .                                                   
T Consensus        95 ----------------------------~---------------------------------------------------   95 (243)
T 2q7f_A           95 ----------------------------Y---------------------------------------------------   95 (243)
T ss_dssp             ----------------------------H---------------------------------------------------
T ss_pred             ----------------------------H---------------------------------------------------
Confidence                                        1                                                   


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                                             .+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++
T Consensus        96 -----------------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           96 -----------------------GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             -----------------------HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                                   234555556666666666666666666666666777777777777777777777765


Q ss_pred             ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc
Q psy12000        343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD  422 (507)
Q Consensus       343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~  422 (507)
                      ...+.+...                                            ...++.+++..|++++|+..|++++..
T Consensus       153 ~~~~~~~~~--------------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          153 ELNENDTEA--------------------------------------------RFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHCTTCHHH--------------------------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HhCCccHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            443221110                                            122344556667788888888888888


Q ss_pred             CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        423 HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       423 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                      .|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..++.+.
T Consensus       189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999998877666553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.85  E-value=2.4e-20  Score=163.88  Aligned_cols=173  Identities=13%  Similarity=0.047  Sum_probs=141.2

Q ss_pred             cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000         99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  178 (507)
Q Consensus        99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~  178 (507)
                      .+..++.+|.+|..+|+|++|++.|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|++..++..     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----   78 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI-----   78 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH-----
Confidence            344588999999999999999999999999999999999999999999999999999999999999988765443     


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcH
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSR  258 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~  258 (507)
                                                        +|.++...+++++|...+.+....+                     
T Consensus        79 ----------------------------------~~~~~~~~~~~~~a~~~~~~a~~~~---------------------  103 (184)
T 3vtx_A           79 ----------------------------------LGSANFMIDEKQAAIDALQRAIALN---------------------  103 (184)
T ss_dssp             ----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred             ----------------------------------HHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence                                              4444555566666655554321000                     


Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                                         |....++..+|.++...|++++|++.|+++.+.+|+++.+++++|.+|..+|++++|+.+|
T Consensus       104 -------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A          104 -------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence                               1112233457899999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCCCchh
Q psy12000        339 LLVQNEGLKNDY  350 (507)
Q Consensus       339 ~~~~~~~~~~~~  350 (507)
                      +++++.+|.+..
T Consensus       165 ~~al~~~p~~a~  176 (184)
T 3vtx_A          165 KKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHTTHHHHH
T ss_pred             HHHHhCCccCHH
Confidence            999987765443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.85  E-value=3.5e-20  Score=162.86  Aligned_cols=164  Identities=16%  Similarity=0.091  Sum_probs=136.7

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      ...+++.+|.+|..+|+|++|++.|+++++.+|+++++++.+|.++..+|++++|+..+.++....+..           
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----------   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----------   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----------
Confidence            345788899999999999999999999999999999999999999999999999999988764322211           


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                                     +..+..+|.++...+++++|+..+.+++..+|++..++..+|.++..+|++++|++.|+++++.+
T Consensus        73 ---------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~  137 (184)
T 3vtx_A           73 ---------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK  137 (184)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence                           22256778889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      |+++.++..+|.++...|++++|+..++++
T Consensus       138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            988876666666655555555555555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=7e-20  Score=180.78  Aligned_cols=251  Identities=13%  Similarity=0.033  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh---CC---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLD---HK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      ++.+|.++...|++++|+..|++++..   .|   ....+++.+|.+|..+|++++|+..+++++...+....       
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-------  178 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-------  178 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------
Confidence            445999999999999999999999987   23   35688999999999999999999999999876544321       


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                             +                  .+....++.++|.+|...|++++|+..+.+.                       
T Consensus       179 -------~------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----------------------  210 (383)
T 3ulq_A          179 -------Y------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA-----------------------  210 (383)
T ss_dssp             -------T------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred             -------c------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------------
Confidence                   0                  0112246788999999999999998888643                       


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh-----c-CCCchHHHHHHHHHHhhCC
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY-----Y-TSDDSFNFNFAQAKCALGQ  330 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~-----~-~~~~~~~~~lg~~~~~~g~  330 (507)
                              +..+.....   .+....++..+|.+|..+|++++|+.+++++...     + |....+++++|.+|..+|+
T Consensus       211 --------l~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  279 (383)
T 3ulq_A          211 --------YSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK  279 (383)
T ss_dssp             --------HHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence                    111111100   0011123456899999999999999999998763     3 4455678899999999999


Q ss_pred             HHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh--
Q psy12000        331 YKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH--  408 (507)
Q Consensus       331 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~--  408 (507)
                      +++|+.+|++++....                            +.++.... ..+          ..++.++...|+  
T Consensus       280 ~~~A~~~~~~al~~~~----------------------------~~~~~~~~-~~~----------~~l~~~~~~~~~~~  320 (383)
T 3ulq_A          280 IDKAHEYHSKGMAYSQ----------------------------KAGDVIYL-SEF----------EFLKSLYLSGPDEE  320 (383)
T ss_dssp             HHHHHHHHHHHHHHHH----------------------------HHTCHHHH-HHH----------HHHHHHHTSSCCHH
T ss_pred             HHHHHHHHHHHHHHHH----------------------------HcCCHHHH-HHH----------HHHHHHHhCCCcHH
Confidence            9999999999864211                            11110000 000          113345555555  


Q ss_pred             -HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        409 -YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       409 -~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                       +++|+.++++. ...|....+...+|.+|.++|++++|...+++++++...
T Consensus       321 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          321 AIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             88899998887 455666678888999999999999999999999886543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.84  E-value=1.9e-19  Score=181.40  Aligned_cols=346  Identities=11%  Similarity=-0.013  Sum_probs=231.6

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY---DVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      ..+|.++...|++++|+..|+++.+.  +++++++.+|.+|...|++   ++|++.|++++..   ++.+.+.++.+++.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            35788999999999999999999765  5678888999999999999   9999999999866   55666777775554


Q ss_pred             cc-----ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHH---HHHHHhc-CCCChHHHHHHHHHHHHh
Q psy12000        181 LF-----TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEA---FDLIKNL-EPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       181 ~~-----~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A---~~~l~~~-~~~~~~~~~~~~~~~~~~  251 (507)
                      .+     ++++|...+++..+       +.++.++++||.+|...+..+++   ...+.+. .+.++......|.++...
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFA-------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQ  154 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHH-------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence            44     67889988888753       23345889999999987765544   3333332 234566667777777766


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc---CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR---SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL  328 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~  328 (507)
                      +...   ...+.+..+++......  +   .+...||.+|...|   ++++|+.+|+++....|.....++++|.+|...
T Consensus       155 ~~~~---~~~~~a~~~~~~a~~~~--~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g  226 (452)
T 3e4b_A          155 GTYD---QHLDDVERICKAALNTT--D---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA  226 (452)
T ss_dssp             TCGG---GGHHHHHHHHHHHTTTC--T---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred             CCcc---cCHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            6543   34455666776554322  1   25668999999999   999999999999988877766668899999876


Q ss_pred             ----CCHHHHHHHHHhhcccCCCchhhhhhhhccc-C--ccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHH
Q psy12000        329 ----GQYKEAEEMFLLVQNEGLKNDYVYISHLTKC-S--PSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS  401 (507)
Q Consensus       329 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  401 (507)
                          +++++|+.+|+++. ++.......+   +.+ +  ...+++++|+..+.+.-+           ...++....+|.
T Consensus       227 ~~~~~d~~~A~~~~~~aa-~g~~~a~~~L---g~~~~~~~~~~d~~~A~~~~~~Aa~-----------~g~~~A~~~Lg~  291 (452)
T 3e4b_A          227 TLGTPDEKTAQALLEKIA-PGYPASWVSL---AQLLYDFPELGDVEQMMKYLDNGRA-----------ADQPRAELLLGK  291 (452)
T ss_dssp             GGSSCCHHHHHHHHHHHG-GGSTHHHHHH---HHHHHHSGGGCCHHHHHHHHHHHHH-----------TTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHc-CCCHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHH
Confidence                79999999999988 5544444443   333 1  235566666655544211           012344566777


Q ss_pred             HHHhHh-----hHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        402 IHFLRC-----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       402 ~~~~~~-----~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      ++. .|     ++++|+.+|+++.   |+++.+.+++|.+|..    ..++++|+..|+++.+  ++++.+.+.+|..+.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence            766 55     9999999999999   9999999999999987    4499999999999977  678888888998877


Q ss_pred             h----cCChHHHHHHHHHHHHh
Q psy12000        473 K----LFTSRAAENQLKPILVS  490 (507)
Q Consensus       473 ~----~~~~~~~~~~~~~~~~~  490 (507)
                      .    ..+...|..-|+...+.
T Consensus       366 ~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          366 QGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             SCTTBCCCHHHHHHHHHHHHTT
T ss_pred             hCCCCCCCHHHHHHHHHHHHHC
Confidence            4    23556666666655544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.84  E-value=4.3e-20  Score=172.86  Aligned_cols=254  Identities=12%  Similarity=-0.009  Sum_probs=145.5

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHh----CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        107 ASIHFLRCHYQEAIDIYKRILLD----HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       107 a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +.+....|++++|+..|++++..    .|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            33445568899999999999987    35677888999999999999999999999999999988776666666666666


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                      ++++|...++++++     ..|..+.++..+|.+|...|++++|+..+.+....+|.                       
T Consensus        92 ~~~~A~~~~~~al~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----------------------  143 (275)
T 1xnf_A           92 NFDAAYEAFDSVLE-----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----------------------  143 (275)
T ss_dssp             CHHHHHHHHHHHHH-----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred             CHHHHHHHHHHHHh-----cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------------
Confidence            66666655555432     12223445555666666666666665555432100000                       


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                                       ..... ....+....|++++|+.+++++....|++... +.++.++...++.++|+..+++++
T Consensus       144 -----------------~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~  204 (275)
T 1xnf_A          144 -----------------DPFRS-LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADA  204 (275)
T ss_dssp             -----------------CHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred             -----------------ChHHH-HHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHh
Confidence                             00001 11222344566666666665555555544332 335555556666666666666554


Q ss_pred             ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc
Q psy12000        343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD  422 (507)
Q Consensus       343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~  422 (507)
                      ...+...                                        .........++.++...|++++|+..|++++..
T Consensus       205 ~~~~~~~----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          205 TDNTSLA----------------------------------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             CSHHHHH----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccccccc----------------------------------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            3221000                                        000011233455666666667777777776666


Q ss_pred             CCchhhhHHHHHhhccccccchhHHHHH
Q psy12000        423 HKDLLALNVYGAMCYYKLDYYDVSQEQV  450 (507)
Q Consensus       423 ~p~~~~~~~~la~~y~~~g~~~~A~~~~  450 (507)
                      +|++...   .+.++..+|++++|++.+
T Consensus       245 ~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          245 NVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             CchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            6655433   245566666666666655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.84  E-value=3.7e-19  Score=164.40  Aligned_cols=66  Identities=12%  Similarity=-0.023  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      ++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.+++++..+|++.
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  105 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA  105 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence            678888888889999999999999888888888888888888889999999888888887777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.84  E-value=5.1e-20  Score=168.99  Aligned_cols=205  Identities=12%  Similarity=0.022  Sum_probs=164.1

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ....+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.             
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------   89 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-------------   89 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------
Confidence            4556678999999999999999999999999999999999999999999999999999876432111             


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                   .+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|
T Consensus        90 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A           90 -------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             -------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                         1223667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHH
Q psy12000        166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEY  241 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~  241 (507)
                      +++.++..++.+++..|++++|...++.+.+     ..+..+.++..+|.+|...|++++|+..+++.   .|.++..+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAVTE-----QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL  230 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence            9999999999999999999999999998753     23456778999999999999999999988764   56665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.83  E-value=1.1e-18  Score=157.87  Aligned_cols=66  Identities=23%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      ++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|++.+++++..+|++.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~   76 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA   76 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            567777777788888888888888877777777777778888778888888777777777666554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.82  E-value=9.4e-19  Score=177.51  Aligned_cols=212  Identities=9%  Similarity=-0.027  Sum_probs=170.4

Q ss_pred             hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhh
Q psy12000        113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY-DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQL  191 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l  191 (507)
                      .+++++|+..+++.....|+...+++.+|.++...|++ ++|++.|+++++.+|++..+                     
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a---------------------  139 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA---------------------  139 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH---------------------
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH---------------------
Confidence            45577777788877777788888888888888888888 88888888877777765421                     


Q ss_pred             HHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHh
Q psy12000        192 KPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLV  271 (507)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~  271 (507)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (474)
T 4abn_A          140 --------------------------------------------------------------------------------  139 (474)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh---------CCHHHHHHHHHhhc
Q psy12000        272 GSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL---------GQYKEAEEMFLLVQ  342 (507)
Q Consensus       272 ~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~~  342 (507)
                                  +..+|.+|...|++++|+.+|+++....|+ ..++.++|.++..+         |++++|+..|++++
T Consensus       140 ------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al  206 (474)
T 4abn_A          140 ------------WNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV  206 (474)
T ss_dssp             ------------HHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence                        113566777778888888888888888887 47788899999999         99999999999988


Q ss_pred             ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH--------hhHHHHHH
Q psy12000        343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR--------CHYQEAID  414 (507)
Q Consensus       343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--------~~~~~Ai~  414 (507)
                      ..++.+...+                                            ..++.++...        |++++|+.
T Consensus       207 ~~~p~~~~~~--------------------------------------------~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          207 QMDVLDGRSW--------------------------------------------YILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HHCTTCHHHH--------------------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhCCCCHHHH--------------------------------------------HHHHHHHHHHHHhhccccchHHHHHH
Confidence            6655433222                                            1123344444        88999999


Q ss_pred             HHHHHhhcCC---chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHH
Q psy12000        415 IYKRILLDHK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAEN  482 (507)
Q Consensus       415 ~~~~~l~~~p---~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~  482 (507)
                      .|++++..+|   +++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++..++..+.|..
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   9999999999999999999999999999999999999999999999988777666665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=2.4e-18  Score=161.24  Aligned_cols=230  Identities=10%  Similarity=-0.009  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      +..++.+|.++...|++++|+.+|++++.  |+++.+++.+|.++..    .+++++|+..|+++++.+  +        
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--------   73 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y--------   73 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C--------
Confidence            44577888888888888888888888887  6777888888888888    888888888888876543  2        


Q ss_pred             hhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000        176 CNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  251 (507)
                                                     +.++.++|.+|..    .+++++|+..+++....               
T Consensus        74 -------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------------  107 (273)
T 1ouv_A           74 -------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---------------  107 (273)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------
T ss_pred             -------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---------------
Confidence                                           2456677777777    88888888777542100               


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA  327 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~  327 (507)
                                                 +...++..+|.+|..    .+++++|+.+++++.+..  ++.+.+++|.+|..
T Consensus       108 ---------------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          108 ---------------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             ---------------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             ---------------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence                                       011233467888888    999999999999988764  55678889999999


Q ss_pred             ----hCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12000        328 ----LGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIH  403 (507)
Q Consensus       328 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  403 (507)
                          .+++++|+.+|+++++.++...                                              ...++.++
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~~~~a----------------------------------------------~~~lg~~~  192 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLKDSPG----------------------------------------------CFNAGNMY  192 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHH----------------------------------------------HHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHH----------------------------------------------HHHHHHHH
Confidence                9999999999999865432111                                              12234455


Q ss_pred             Hh----HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccc----cccchhHHHHHHHHHhcCCCchhhh
Q psy12000        404 FL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIAL  464 (507)
Q Consensus       404 ~~----~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~~l~~~P~~~~a~  464 (507)
                      ..    .+++++|+.+|+++++..|  +...+.+|.+|.+    .|++++|+..|+++++..|+++...
T Consensus       193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            55    6899999999999999876  6778889999999    9999999999999999999877653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=1.9e-18  Score=159.56  Aligned_cols=202  Identities=12%  Similarity=-0.061  Sum_probs=176.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .+.+.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.              
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------------  103 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--------------  103 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------
Confidence            445678999999999999999999999999999999999999999999999999999876432111              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                                  .+..+..+|.++...|++++|+.+|++++.  ..|.+..++..+|.++...|++++|+..+++++..+
T Consensus       104 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          104 ------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                        122366789999999999999999999999  889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ  239 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~  239 (507)
                      |.+..++..++.+++..|++++|...++.+.+     ..+..+.++..++.++...|++++|...++++   .|.++.
T Consensus       172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQ-----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999999999999999999988752     44566788899999999999999999988765   455543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.80  E-value=1.9e-17  Score=150.61  Aligned_cols=212  Identities=8%  Similarity=-0.017  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  178 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~  178 (507)
                      |..++.+|.+++..|++++|+..|++++..+| .+..+++++|.++..+|++++|++.+++++..+|++..+        
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------   78 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA--------   78 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH--------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH--------
Confidence            44578899999999999999999999999998 888999999999999999999999999999999987654        


Q ss_pred             hhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhcc
Q psy12000        179 YKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDT  255 (507)
Q Consensus       179 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~  255 (507)
                                                     +..+|.+|..+|++++|+..+++.   .|.++......+          
T Consensus        79 -------------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~----------  117 (228)
T 4i17_A           79 -------------------------------YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA----------  117 (228)
T ss_dssp             -------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH----------
T ss_pred             -------------------------------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH----------
Confidence                                           445666666777777777666543   444443211111          


Q ss_pred             CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHHH
Q psy12000        256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYKE  333 (507)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~  333 (507)
                                                .++..+|.++...|++++|+.+++++.+.+|+  ...+++++|.+|..+|+.  
T Consensus       118 --------------------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~--  169 (228)
T 4i17_A          118 --------------------------IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD--  169 (228)
T ss_dssp             --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             --------------------------HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH--
Confidence                                      12335789999999999999999999999998  778899999999877643  


Q ss_pred             HHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHH
Q psy12000        334 AEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAI  413 (507)
Q Consensus       334 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai  413 (507)
                         .++++..........+.                                              +......+.|++|+
T Consensus       170 ---~~~~a~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~A~  200 (228)
T 4i17_A          170 ---VLRKATPLASSNKEKYA----------------------------------------------SEKAKADAAFKKAV  200 (228)
T ss_dssp             ---HHHHHGGGTTTCHHHHH----------------------------------------------HHHHHHHHHHHHHH
T ss_pred             ---HHHHHHhcccCCHHHHH----------------------------------------------HHHHHHHHHHHHHH
Confidence               34444332211111000                                              01112236688888


Q ss_pred             HHHHHHhhcCCchhhhHHHHHhhc
Q psy12000        414 DIYKRILLDHKDLLALNVYGAMCY  437 (507)
Q Consensus       414 ~~~~~~l~~~p~~~~~~~~la~~y  437 (507)
                      .+|+++++.+|+++.+...++.+.
T Consensus       201 ~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          201 DYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHH
Confidence            888888888888887776666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=4e-18  Score=162.87  Aligned_cols=253  Identities=9%  Similarity=0.014  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHhhhhhhc
Q psy12000        117 QEAIDIYKRILLDHKDLLALNVYGAMCYYK-------LDYY-------DVSQEQVAMYLA-QKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~a~~~~a~~~~~~  181 (507)
                      ++|+..|++++..+|+++++++.+|..+..       .|++       ++|+..|++++. .+|++..++..++.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999988874       5886       899999999999 6999998888888888888


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhH-hHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPE-SRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                      |++++|...|+++++     ..|..+. ++.++|.++.+.|++++|...+.+.....|..                    
T Consensus       113 ~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------  167 (308)
T 2ond_A          113 MKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------------  167 (308)
T ss_dssp             TCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------------
T ss_pred             CCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------------
Confidence            899999988887752     3455555 88889999989999999888886542222210                    


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHH-hhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFF-LLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                                          ...+...+.... ..|++++|+.+|+++....|+++.++..+|..+..+|++++|...|+
T Consensus       168 --------------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  227 (308)
T 2ond_A          168 --------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  227 (308)
T ss_dssp             --------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                                011111222222 36999999999999999999998899999999999999999999999


Q ss_pred             hhccc---CCC-chhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000        340 LVQNE---GLK-NDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  415 (507)
Q Consensus       340 ~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~  415 (507)
                      +++..   ++. ....+                                            ..++......|++++|..+
T Consensus       228 ~al~~~~l~p~~~~~l~--------------------------------------------~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          228 RVLTSGSLPPEKSGEIW--------------------------------------------ARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHSSSSCGGGCHHHH--------------------------------------------HHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHH--------------------------------------------HHHHHHHHHcCCHHHHHHH
Confidence            99764   211 11111                                            1122234445899999999


Q ss_pred             HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ++++++..|++..... ++.+..+           ..++.++|+++.++|.+|..
T Consensus       264 ~~~a~~~~p~~~~~~~-~~~~~~r-----------~~~l~~~P~~~~~ln~lgY~  306 (308)
T 2ond_A          264 EKRRFTAFREEYEGKE-TALLVDR-----------YKFMDLYPCSASELKALGYK  306 (308)
T ss_dssp             HHHHHHHTTTTTSSCH-HHHHHTT-----------TCBTTBCSSCHHHHHTTTCC
T ss_pred             HHHHHHHcccccccch-HHHHHHH-----------HHhcccCCCCHHHHHhcCCC
Confidence            9999999998765332 1332111           16778999999999988864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=5.3e-19  Score=179.31  Aligned_cols=196  Identities=9%  Similarity=-0.107  Sum_probs=175.1

Q ss_pred             cchhhHHHHHHHhhcCH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000          6 SLTDAWLGYCHFHLGQY-KQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      ....+.+|.++...|+| ++|+..|+++++.+|+++++|+.+|.++..+|++++|+.+++++....+..           
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------  170 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-----------  170 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-----------
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-----------
Confidence            34566789999999999 999999999999999999999999999999999999999999886543321           


Q ss_pred             ChhHHHHHHHHHhhcHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhc--------
Q psy12000         85 DEKSLMEYHQKLEDSLEEQLCLASIHFLR---------CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL--------  147 (507)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------  147 (507)
                                      ..+..+|.++...         |++++|+..|++++..+|++..+++.+|.++..+        
T Consensus       171 ----------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          171 ----------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             ----------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             ----------------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence                            1255678888888         9999999999999999999999999999999999        


Q ss_pred             CCHHHHHHHHHHHHhcCC---CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH
Q psy12000        148 DYYDVSQEQVAMYLAQKP---TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ  224 (507)
Q Consensus       148 g~~~~A~~~~~~~l~~~p---~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  224 (507)
                      |++++|+..|++++..+|   +++.++..+|.++...|++++|...++++.+     ..|..+.++.+++.++...|+++
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-----LDPAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999   9999999999999999999999999998753     34667789999999999999999


Q ss_pred             HHHHHHHhc
Q psy12000        225 EAFDLIKNL  233 (507)
Q Consensus       225 ~A~~~l~~~  233 (507)
                      +|+..+.++
T Consensus       310 eAi~~~~~~  318 (474)
T 4abn_A          310 SLLESKGKT  318 (474)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHhccc
Confidence            999877665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.80  E-value=1.1e-17  Score=156.70  Aligned_cols=215  Identities=11%  Similarity=-0.024  Sum_probs=167.6

Q ss_pred             cCChhHHHHHHH-HHh-hcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHH
Q psy12000         83 LGDEKSLMEYHQ-KLE-DSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDV  152 (507)
Q Consensus        83 ~~~~~~~~~~~~-~l~-~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~  152 (507)
                      .++.+.+..+.+ .+. ..+..++.+|.++..    .|++++|+.+|++++..+  ++.+++.+|.+|..    .+++++
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~   96 (273)
T 1ouv_A           19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK   96 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence            344444444333 333 345558999999999    999999999999999885  78899999999999    999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHH
Q psy12000        153 SQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQ  224 (507)
Q Consensus       153 A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  224 (507)
                      |++.|++++..+  ++.++..++.++..    .+++++|...++++.+       ...+.++.++|.+|..    .++++
T Consensus        97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~~~~~~~~  167 (273)
T 1ouv_A           97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGCTILGSLYDAGRGTPKDLK  167 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHcCCCCCCCHH
Confidence            999999999874  67788888888887    8888888888887753       1145677888888887    78888


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHH
Q psy12000        225 EAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDV  300 (507)
Q Consensus       225 ~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A  300 (507)
                      +|+..+++....                                          +...++..+|.+|..    .+++++|
T Consensus       168 ~A~~~~~~a~~~------------------------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A  205 (273)
T 1ouv_A          168 KALASYDKACDL------------------------------------------KDSPGCFNAGNMYHHGEGATKNFKEA  205 (273)
T ss_dssp             HHHHHHHHHHHT------------------------------------------TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            887777542100                                          011234468899999    9999999


Q ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHh----hCCHHHHHHHHHhhcccCCCchhhh
Q psy12000        301 ILYLSSIKSYYTSDDSFNFNFAQAKCA----LGQYKEAEEMFLLVQNEGLKNDYVY  352 (507)
Q Consensus       301 i~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~  352 (507)
                      +.+++++.+..|  +.+.+++|.+|..    .|++++|+.+|++++..++.+....
T Consensus       206 ~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          206 LARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999987754  5678889999999    9999999999999987766544333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.80  E-value=7.1e-18  Score=166.09  Aligned_cols=248  Identities=12%  Similarity=0.023  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhC------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      ++.+|..+...|++++|+..|++++...      |....+++.+|.+|..+|++++|+..+++++...+....       
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-------  176 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-------  176 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-------
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-------
Confidence            5678999999999999999999999874      235678999999999999999999999999876544321       


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                             +                  .+....++.++|.+|...|++++|+..+.+.                       
T Consensus       177 -------~------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-----------------------  208 (378)
T 3q15_A          177 -------Y------------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAA-----------------------  208 (378)
T ss_dssp             -------C------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred             -------c------------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------------------
Confidence                   0                  0012346788999999999999999887643                       


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-----hcCCCchHHHHHHHHHHhhCCH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-----YYTSDDSFNFNFAQAKCALGQY  331 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-----~~~~~~~~~~~lg~~~~~~g~~  331 (507)
                              +...+.....   .....++..+|.+|..+|++++|+.+++++..     .+|....+++++|.++..+|++
T Consensus       209 --------l~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~  277 (378)
T 3q15_A          209 --------LELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT  277 (378)
T ss_dssp             --------HHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred             --------HHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence                    1111111100   01122345789999999999999999999887     5565667788999999999999


Q ss_pred             HHHHHHHHhhcccCCCc-hhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhh--
Q psy12000        332 KEAEEMFLLVQNEGLKN-DYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH--  408 (507)
Q Consensus       332 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~--  408 (507)
                      ++|+.++++++...... ...+..                              ..          ..++.++...++  
T Consensus       278 ~~A~~~~~~al~~~~~~~~~~~~~------------------------------~~----------~~l~~ly~~~~~~~  317 (378)
T 3q15_A          278 QKAFQFIEEGLDHITARSHKFYKE------------------------------LF----------LFLQAVYKETVDER  317 (378)
T ss_dssp             HHHHHHHHHHHHHCCTTCCSCHHH------------------------------HH----------HHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHH------------------------------HH----------HHHHHHHhCCCcHH
Confidence            99999999986432110 000000                              00          011122222333  


Q ss_pred             -HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000        409 -YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  457 (507)
Q Consensus       409 -~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~  457 (507)
                       +.+|+.++++. ...|+...+...+|.+|.++|++++|...|+++++..
T Consensus       318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             78888888873 3445566677889999999999999999999998753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=4.2e-18  Score=153.95  Aligned_cols=203  Identities=16%  Similarity=0.073  Sum_probs=174.3

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ..+.+.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.             
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------   74 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-------------   74 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------------
Confidence            3455668999999999999999999999999999999999999999999999999999876432111             


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILL--DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                                   .+..+..+|.++... |++++|+..|++++.  ..|....+++.+|.++...|++++|+..+++++.
T Consensus        75 -------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           75 -------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             -------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                         122356789999999 999999999999999  6778889999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCC-ChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCCh
Q psy12000        163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLID-VIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVP  238 (507)
Q Consensus       163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~  238 (507)
                      .+|+++.++..++.++...|++++|...++.+.+     ..| ..+..+..++.++...|++++|...++.+   .|.++
T Consensus       142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS-----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999988753     234 55677888888899999999998877654   55555


Q ss_pred             H
Q psy12000        239 Q  239 (507)
Q Consensus       239 ~  239 (507)
                      .
T Consensus       217 ~  217 (225)
T 2vq2_A          217 E  217 (225)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.79  E-value=8.4e-16  Score=165.54  Aligned_cols=391  Identities=12%  Similarity=0.019  Sum_probs=256.5

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCC----ChhhHH---------------------------HHHHHHHhhccHHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNP----PEDTEF---------------------------NIASCYFYLGMYLQAN   60 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~---------------------------~la~~~~~~g~~~eA~   60 (507)
                      ....|...|++.+|++.|++++ ..|+    +.+.-.                           -+|.++..+|.++||.
T Consensus       991 ~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAF 1069 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHH
Confidence            5667789999999999999998 4444    221111                           2488899999999999


Q ss_pred             HHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH
Q psy12000         61 QILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG  140 (507)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  140 (507)
                      .+|+++.........+   ....++.+++.++...+ ..+..++.+|.++...|++++|++.|.++     ++++.+..+
T Consensus      1070 ~IYkKa~~~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eV 1140 (1630)
T 1xi4_A         1070 AIFRKFDVNTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV 1140 (1630)
T ss_pred             HHHHHcCCHHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHH
Confidence            9999985221111111   11233334444433333 33566999999999999999999999775     778889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ  220 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  220 (507)
                      |.++.+.|+|++|+++|..+.+..|+... ..-++..+.+.++.+.....+.           ......+..+|..+...
T Consensus      1141 a~~~~~lGkyEEAIeyL~mArk~~~e~~I-dt~LafaYAKl~rleele~fI~-----------~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A         1141 VQAANTSGNWEELVKYLQMARKKARESYV-ETELIFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcccccc-cHHHHHHHHhhcCHHHHHHHHh-----------CCCHHHHHHHHHHHHhc
Confidence            99999999999999999999987755421 1125566667777664332211           12335677899999999


Q ss_pred             ccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHH
Q psy12000        221 EEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDV  300 (507)
Q Consensus       221 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  300 (507)
                      |+|++|...+.+.     ..|...+.++..+|+       ++.|++.+++..+       ..+|...+.+....|+|..|
T Consensus      1209 g~YeeA~~~Y~kA-----~ny~rLA~tLvkLge-------~q~AIEaarKA~n-------~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1209 KMYDAAKLLYNNV-----SNFGRLASTLVHLGE-------YQAAVDGARKANS-------TRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             CCHHHHHHHHHhh-----hHHHHHHHHHHHhCC-------HHHHHHHHHHhCC-------HHHHHHHHHHHhhhhHHHHH
Confidence            9999999999875     356667777877775       5566666654432       23455677888889999999


Q ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHHHHcCC
Q psy12000        301 ILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGD  378 (507)
Q Consensus       301 i~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~  378 (507)
                      ..+...+. .   ++..+..++..|...|.+++|+..+++++..++.+...+  ++. ..+-++.++..++.++|.+...
T Consensus      1270 ~~cgl~Ii-v---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai-LyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A         1270 QMCGLHIV-V---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI-LYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred             HHHHHhhh-c---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH-HHHhCCHHHHHHHHHHHHHhcc
Confidence            98665422 2   233455788999999999999999999987774433333  221 2233566777777777776666


Q ss_pred             cHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHh------------hcCCchhhhHHHHHhhccccccchhH
Q psy12000        379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL------------LDHKDLLALNVYGAMCYYKLDYYDVS  446 (507)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l------------~~~p~~~~~~~~la~~y~~~g~~~~A  446 (507)
                      .++.+......    .-+..+..+|...|+|+.|+...-...            -..+.++++++....-|.  +..-++
T Consensus      1345 i~k~~r~~e~~----~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ 1418 (1630)
T 1xi4_A         1345 IPKVLRAAEQA----HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLL 1418 (1630)
T ss_pred             cchHhHHHHHH----HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHH
Confidence            55443332221    112333445555688888883322221            124666777766554444  333344


Q ss_pred             HHHHHHHH
Q psy12000        447 QEQVAMYL  454 (507)
Q Consensus       447 ~~~~~~~l  454 (507)
                      +..+..++
T Consensus      1419 lndLl~~l 1426 (1630)
T 1xi4_A         1419 LNDLLMVL 1426 (1630)
T ss_pred             HHHHHHHh
Confidence            44444444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.79  E-value=2e-18  Score=157.13  Aligned_cols=201  Identities=12%  Similarity=0.026  Sum_probs=162.3

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPN-PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      +++..+..|.+++..|+|++|+..|+++++.+| .+..+++.+|.++..+|++++|+..++++....+..          
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------   75 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL----------   75 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH----------
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch----------
Confidence            456778899999999999999999999999998 888999999999999999999999999875433321          


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHhcCCHHHHHHH
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-------ALNVYGAMCYYKLDYYDVSQEQ  156 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~  156 (507)
                                      +..+..+|.++..+|++++|+..|++++..+|+++       .+++.+|.++..+|++++|++.
T Consensus        76 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  139 (228)
T 4i17_A           76 ----------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN  139 (228)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence                            22367899999999999999999999999999988       6799999999999999999999


Q ss_pred             HHHHHhcCCC--cHHHHHHHhhhhhhccCh--HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        157 VAMYLAQKPT--SRIALNLKACNTYKLFTS--RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       157 ~~~~l~~~p~--~~~a~~~~a~~~~~~~~~--~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      |+++++.+|+  ++.++..+|.+++..|+.  +.+..        .    .+..+.  ...+......+.|++|+..+++
T Consensus       140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~--------~----~~~~~~--~~~~~~~~~~~~~~~A~~~~~~  205 (228)
T 4i17_A          140 YKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATP--------L----ASSNKE--KYASEKAKADAAFKKAVDYLGE  205 (228)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGG--------G----TTTCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHh--------c----ccCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999  889999899988776643  22221        1    111111  1233445567889999998876


Q ss_pred             c---CCCChHHHHHHH
Q psy12000        233 L---EPSVPQEYILKA  245 (507)
Q Consensus       233 ~---~~~~~~~~~~~~  245 (507)
                      .   .|.++......+
T Consensus       206 a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          206 AVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHCTTCHHHHHHHH
T ss_pred             HhhcCCCCHHHHHHHH
Confidence            4   677776554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.79  E-value=2.7e-18  Score=169.36  Aligned_cols=246  Identities=13%  Similarity=0.141  Sum_probs=177.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcC---CCC---ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHL---PNP---PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      +..|.+++..|+|++|+..|+++++.   .|+   .+.+++.+|.++..+|++++|+..++++.....          ..
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----------~~  176 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----------EH  176 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------TC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------hC
Confidence            34899999999999999999999987   233   447899999999999999999999988742111          01


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                      ++...         .....+..+|.++...|++++|+.+|++++...|..      ..++.++|.+|..+|++++|++.+
T Consensus       177 ~~~~~---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          177 EAYNI---------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             STTHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchH---------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            00000         001226789999999999999999999999886533      358899999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000        158 AMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV  237 (507)
Q Consensus       158 ~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~  237 (507)
                      ++++...+..                                 ...+..+.++.++|.+|..+|++++|...+.+...  
T Consensus       248 ~~al~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--  292 (383)
T 3ulq_A          248 KRAIAVFEES---------------------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA--  292 (383)
T ss_dssp             HHHHHHHHHT---------------------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhh---------------------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            9988642110                                 00022345677888888999999999888765311  


Q ss_pred             hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcC---HHHHHHHHHHhhhhcCCC
Q psy12000        238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRS---FKDVILYLSSIKSYYTSD  314 (507)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~Ai~~~~~~~~~~~~~  314 (507)
                                                   .......    +........+|.++...|+   +++|+.++++... .|..
T Consensus       293 -----------------------------~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~  338 (383)
T 3ulq_A          293 -----------------------------YSQKAGD----VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADL  338 (383)
T ss_dssp             -----------------------------HHHHHTC----HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHH
T ss_pred             -----------------------------HHHHcCC----HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHH
Confidence                                         0000000    0000112247888888888   8888888887632 2333


Q ss_pred             chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        315 DSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      ..++..+|.+|..+|++++|+.+|++++.
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677899999999999999999998863

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=1.9e-18  Score=160.93  Aligned_cols=155  Identities=13%  Similarity=0.136  Sum_probs=129.0

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLS   80 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~   80 (507)
                      .+....+.+|.+++..|+|++|+..|+++++.+|++   +++++.+|.+++.+|++++|+..++++....+...      
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~------   86 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP------   86 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc------
Confidence            345677889999999999999999999999999999   88999999999999999999999988754222110      


Q ss_pred             HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHH--------hhcHHHHHHHHHHHHHhCCchhHHH---------------
Q psy12000         81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--------RCHYQEAIDIYKRILLDHKDLLALN---------------  137 (507)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~---------------  137 (507)
                                       ..+..++.+|.++..        .|++++|+..|++++..+|+++.+.               
T Consensus        87 -----------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~  149 (261)
T 3qky_A           87 -----------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLAR  149 (261)
T ss_dssp             -----------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHH
Confidence                             012236789999999        9999999999999999999876655               


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHhhhhhhc
Q psy12000        138 --VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKL  181 (507)
Q Consensus       138 --~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~~a~~~~~~  181 (507)
                        +.+|.+|..+|++++|+..|++++..+|+++   .++..++.++..+
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence              8889999999999999999999999999854   3555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.79  E-value=2.3e-19  Score=152.05  Aligned_cols=147  Identities=16%  Similarity=0.030  Sum_probs=126.8

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      .||.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+..++++....+.                  
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------------   63 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------------------   63 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Confidence            47899999999999999999999999999999999999999999999999999987543222                  


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcHH
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQ-VAMYLAQKPTSRI  169 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~~~~  169 (507)
                              ++..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|.+. ++++++.+|+++.
T Consensus        64 --------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A           64 --------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred             --------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence                    1334788999999999999999999999999999999999999999999999887765 5999999999999


Q ss_pred             HHHHHhhhhhhccC
Q psy12000        170 ALNLKACNTYKLFT  183 (507)
Q Consensus       170 a~~~~a~~~~~~~~  183 (507)
                      ++.+++.++...|+
T Consensus       136 ~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          136 VYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCc
Confidence            99888887666553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=2e-18  Score=182.15  Aligned_cols=164  Identities=12%  Similarity=-0.026  Sum_probs=150.6

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      +++..+|.++..+|++++|++.|+++++.+|+++.+++++|.++..+|++++|+..|+++....+.              
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--------------   75 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--------------   75 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence            456779999999999999999999999999999999999999999999999999999987532221              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                  .++.+.++|.++..+|++++|++.|+++++.+|++..+++++|.++..+|++++|++.|+++++.+|+
T Consensus        76 ------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A           76 ------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD  143 (723)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                        12347889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILV  196 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~  196 (507)
                      +..++..++.++...|++++|...++++++
T Consensus       144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999999999998888653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=3.6e-18  Score=180.21  Aligned_cols=173  Identities=10%  Similarity=-0.038  Sum_probs=149.7

Q ss_pred             ccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhc
Q psy12000        278 CDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLT  357 (507)
Q Consensus       278 ~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  357 (507)
                      |+...++..||.++..+|++++|+.+|+++++.+|++..+++++|.+|..+|++++|++.|++++..+|.....+     
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~-----   80 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-----   80 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----
Confidence            444556778999999999999999999999999999999999999999999999999999999987665432222     


Q ss_pred             ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhc
Q psy12000        358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCY  437 (507)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y  437 (507)
                                                             ..+|.++...|++++|+..|+++++.+|++..++.++|.+|
T Consensus        81 ---------------------------------------~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~  121 (723)
T 4gyw_A           81 ---------------------------------------SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH  121 (723)
T ss_dssp             ---------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                                   23455677778999999999999999999999999999999


Q ss_pred             cccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        438 YKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       438 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      .++|++++|++.|+++++++|+++.++..++.++..+++...|++.++++++..|.+
T Consensus       122 ~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            999999999999999999999999999999999999898888888888888877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=1.9e-15  Score=162.87  Aligned_cols=303  Identities=12%  Similarity=0.043  Sum_probs=202.8

Q ss_pred             CCccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCcccc----chHHH
Q psy12000          3 NADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKT----RLSFH   78 (507)
Q Consensus         3 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~   78 (507)
                      .+++.+.+.+|.++...|++++|+..|.++     ++++.|..+|.++.+.|++++|++++..+.+.....    ...+.
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            355677788999999999999999999775     677889999999999999999999998775432111    11122


Q ss_pred             HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      ++ +.+..+++..+..  .....++..+|..++..|+|++|+.+|.++        ..|..+|.++.++|++++|++.++
T Consensus      1177 YA-Kl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1177 LA-KTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             HH-hhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence            22 2234444443321  123456788999999999999999999996        467889999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCCh
Q psy12000        159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVP  238 (507)
Q Consensus       159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~  238 (507)
                      ++     .++.++.-.+......|.+..|......         ....++....++..|.+.|.|++|+.+++.....++
T Consensus      1246 KA-----~n~~aWkev~~acve~~Ef~LA~~cgl~---------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A         1246 KA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH---------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred             Hh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh---------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence            88     3345555455555566777777653322         233566777899999999999999999987644333


Q ss_pred             ---HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc---cccchhhhhHHHHHHHhhcCHHHHHHH---------
Q psy12000        239 ---QEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS---ECDTVPGRQCMASSFFLLRSFKDVILY---------  303 (507)
Q Consensus       239 ---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~Ai~~---------  303 (507)
                         ..+...+.++...     ..+.+.++.++|....+.+.   .+.....|..+..+|.+-|+|+.|+..         
T Consensus      1312 aH~gmftELaiLyaKy-----~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A         1312 AHMGMFTELAILYSKF-----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred             hHhHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence               3333344444432     34556666666654333221   112222344578889999999999932         


Q ss_pred             ----HHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        304 ----LSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       304 ----~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                          |+.+.. .+.++..++....-|.  +..+.++..+..++.
T Consensus      1387 ~~~~Fk~~i~-kv~n~elyykai~Fyl--~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A         1387 KEGQFKDIIT-KVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 1427 (1630)
T ss_pred             hhHHHHHHhc-ccccHHHHHHHHHHHH--hhChHHHHHHHHHhh
Confidence                222221 2345566665555555  555566666665553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.2e-18  Score=162.12  Aligned_cols=265  Identities=14%  Similarity=0.097  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  174 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~  174 (507)
                      +..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++......       
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------  102 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT-------  102 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------
Confidence            788999999999999999999999984        67788899999999999999999999999887542100       


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~  254 (507)
                                              .....+....++.++|.+|...|++++|+..+.+..                    
T Consensus       103 ------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~--------------------  138 (311)
T 3nf1_A          103 ------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL--------------------  138 (311)
T ss_dssp             ------------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--------------------
T ss_pred             ------------------------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH--------------------
Confidence                                    001112234567889999999999999998886531                    


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--------cCCCchHHHHHHHHHH
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--------YTSDDSFNFNFAQAKC  326 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--------~~~~~~~~~~lg~~~~  326 (507)
                                 ..+..... ...+....++..+|.++...|++++|+.+++++...        .|....++..+|.+|.
T Consensus       139 -----------~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          139 -----------EIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             -----------HHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                       11100000 001112233456899999999999999999988765        3334566788999999


Q ss_pred             hhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH
Q psy12000        327 ALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR  406 (507)
Q Consensus       327 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  406 (507)
                      .+|++++|+.+|++++...+....      +......   ...+          ......          ...+......
T Consensus       207 ~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~---~~~~----------~~~~~~----------~~~~~~~~~~  257 (311)
T 3nf1_A          207 KQGKFKQAETLYKEILTRAHEREF------GSVDDEN---KPIW----------MHAEER----------EECKGKQKDG  257 (311)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHH------C---------CCHH----------HHHHHH----------HHC-------
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcC------CCCCcch---HHHH----------HHHHHH----------HHhcCchhhH
Confidence            999999999999998743211000      0000000   0000          000000          0011122233


Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                      +.+.+|+..++++....|....++..+|.+|.++|++++|+..+++++++.|+
T Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            57788889999999999999999999999999999999999999999998876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=3.9e-18  Score=165.72  Aligned_cols=382  Identities=11%  Similarity=0.012  Sum_probs=167.4

Q ss_pred             HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000         14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH   93 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (507)
                      ......|+.++|.++++++     +++++|..+|.++...|++++|++.|.++.+..                       
T Consensus        11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~-----------------------   62 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPS-----------------------   62 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHH-----------------------
Confidence            3445678999999999988     334699999999999999999999998764311                       


Q ss_pred             HHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12000         94 QKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNL  173 (507)
Q Consensus        94 ~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~  173 (507)
                              .+...+..+...|++++|+.+++.+.+..|+ +.+...++.+|.++|+++++.++++     .|+. .+++.
T Consensus        63 --------~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~a~~~  127 (449)
T 1b89_A           63 --------SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQ  127 (449)
T ss_dssp             -------------------------------------------------------CHHHHTTTTT-----CC--------
T ss_pred             --------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-HHHHH
Confidence                    1344556667789999999988888876554 6778889999999999999888774     3544 47778


Q ss_pred             HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q psy12000        174 KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ  253 (507)
Q Consensus       174 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~  253 (507)
                      +|..++..|++++|...|.++             ..+..+|.++.+.|+|++|++.+.+.  .++..|.....+....| 
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~-  191 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK-  191 (449)
T ss_dssp             ---------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcC-
Confidence            888888999999999888754             35788999999999999999999887  35655554444555544 


Q ss_pred             ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHh--hCCH
Q psy12000        254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCA--LGQY  331 (507)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~  331 (507)
                            .++.|+.....+.   ..++..   ..+..+|.+.|++++|+.++++++..++.+...+..+|.+|.+  -++.
T Consensus       192 ------ef~lA~~~~l~L~---~~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~  259 (449)
T 1b89_A          192 ------EFRLAQMCGLHIV---VHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM  259 (449)
T ss_dssp             ------CHHHHHHTTTTTT---TCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             ------cHHHHHHHHHHHH---hCHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence                  3455544332222   122222   1367889999999999999999999988888888888888877  5788


Q ss_pred             HHHHHHHHhhcccCC-----CchhhhhhhhcccCccchhhhHHHHHHHHcCCcH----HHHHHHHHhhhcHHHHHHHHHH
Q psy12000        332 KEAEEMFLLVQNEGL-----KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK----SLMEYHQKLEDSLEEQLCLASI  402 (507)
Q Consensus       332 ~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~l~~~  402 (507)
                      .++++.|...++.++     .+.+.|.. +..+|...++++.|......-.+..    .-.+.+.+++.   ..+.+..+
T Consensus       260 ~ehl~~~~~~ini~k~~~~~~~~~~w~e-~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n---~elyYkai  335 (449)
T 1b89_A          260 REHLELFWSRVNIPKVLRAAEQAHLWAE-LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN---VELYYRAI  335 (449)
T ss_dssp             HHHHHHHSTTSCHHHHHHHHHTTTCHHH-HHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS---THHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH---HHHHHHHH
Confidence            888888876655443     22333322 2334555667777665544433221    11122222211   12334455


Q ss_pred             HHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        403 HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       403 ~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      .+..+....++..+-.++...=|...    ....+.+.|+..-...+++.+...  ++..+...+-.++.+..+
T Consensus       336 ~fyl~~~p~~l~~ll~~l~~~ld~~r----~v~~~~~~~~l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed  403 (449)
T 1b89_A          336 QFYLEFKPLLLNDLLMVLSPRLDHTR----AVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEED  403 (449)
T ss_dssp             HHHHHHCGGGHHHHHHHHGGGCCHHH----HHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHhccCcHH----HHHHHHHcCCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhh
Confidence            55556677777777777733222222    223356788888888888766543  344444445555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=1.4e-18  Score=147.15  Aligned_cols=145  Identities=16%  Similarity=-0.000  Sum_probs=124.3

Q ss_pred             HHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhh
Q psy12000        287 MASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKT  366 (507)
Q Consensus       287 la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  366 (507)
                      ||.++..+|++++|+..++++...+|+.+..++++|.+|+..|++++|+++|++++..+|.+...+              
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~--------------   68 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH--------------   68 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--------------
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--------------
Confidence            788999999999999999999988888888889999999999999999999999987665443222              


Q ss_pred             hHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhH
Q psy12000        367 RLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVS  446 (507)
Q Consensus       367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A  446 (507)
                                                    ..+|.++...|++++|+..|+++++.+|+++.++..+|.+|.++|++++|
T Consensus        69 ------------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a  118 (150)
T 4ga2_A           69 ------------------------------RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR  118 (150)
T ss_dssp             ------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred             ------------------------------HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence                                          33456777889999999999999999999999999999999999999988


Q ss_pred             HHH-HHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        447 QEQ-VAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       447 ~~~-~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      ... ++++++++|+++.++++++.++...+
T Consensus       119 a~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          119 AKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            776 59999999999999999999876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=2.1e-17  Score=175.00  Aligned_cols=193  Identities=17%  Similarity=0.068  Sum_probs=168.8

Q ss_pred             HhhcCHHHHHHHHHHHh--------cCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         17 FHLGQYKQALGIYETLR--------HLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        17 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      ...|++++|++.|++++        +.+|++.++++.+|.++..+|++++|+..++++....+.                
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------  465 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----------------  465 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------------
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------------
Confidence            78999999999999999        899999999999999999999999999999887532222                


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                ++..++.+|.++...|++++|+..|+++++.+|++..+++++|.++..+|++++ ++.|+++++.+|++.
T Consensus       466 ----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~  534 (681)
T 2pzi_A          466 ----------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI  534 (681)
T ss_dssp             ----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred             ----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence                      123377899999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh--------ccHHHHHHHHHhcCCCChHH
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ--------EEHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~l~~~~~~~~~~  240 (507)
                      .+++.+|.++...|++++|+..++++     ....|..+.++.++|.+++..        +++++|...+..+.+..+..
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~a-----l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~  609 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEV-----PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV  609 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS-----CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhh-----cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence            99999999999999999999998765     356778889999999998773        55888888888877666654


Q ss_pred             H
Q psy12000        241 Y  241 (507)
Q Consensus       241 ~  241 (507)
                      .
T Consensus       610 ~  610 (681)
T 2pzi_A          610 L  610 (681)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.75  E-value=3.5e-17  Score=152.28  Aligned_cols=175  Identities=13%  Similarity=0.066  Sum_probs=144.7

Q ss_pred             chhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC---chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhh
Q psy12000        280 TVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD---DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHL  356 (507)
Q Consensus       280 ~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  356 (507)
                      .....+.+|..++..|+|++|+..|+++....|++   +.+++.+|.+|..+|++++|+..|++++...|.+.....   
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---   90 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ---   90 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH---
Confidence            34456678999999999999999999999999988   678899999999999999999999999865543211100   


Q ss_pred             cccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHh--------HhhHHHHHHHHHHHhhcCCchhh
Q psy12000        357 TKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFL--------RCHYQEAIDIYKRILLDHKDLLA  428 (507)
Q Consensus       357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~--------~~~~~~Ai~~~~~~l~~~p~~~~  428 (507)
                                                            ....+|.+++.        .|++++|+..|++++..+|+++.
T Consensus        91 --------------------------------------a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A           91 --------------------------------------AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             --------------------------------------HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             --------------------------------------HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence                                                  01223445555        78999999999999999998876


Q ss_pred             hH-----------------HHHHhhccccccchhHHHHHHHHHhcCCCc---hhhhhHHHhhhhhc----------CChH
Q psy12000        429 LN-----------------VYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKACNTYKL----------FTSR  478 (507)
Q Consensus       429 ~~-----------------~~la~~y~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~~~~~~~~~----------~~~~  478 (507)
                      +.                 +.+|.+|.++|++++|+..|+++++.+|++   +.++..+|.+++.+          ++.+
T Consensus       133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~  212 (261)
T 3qky_A          133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR  212 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence            55                 788999999999999999999999999994   56888899999877          6678


Q ss_pred             HHHHHHHHHHHhCCCCc
Q psy12000        479 AAENQLKPILVSAGPRV  495 (507)
Q Consensus       479 ~~~~~~~~~~~~~~~~~  495 (507)
                      .|...|+++++.+|.+.
T Consensus       213 ~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          213 RAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHCCCCh
Confidence            88889999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.74  E-value=8.7e-16  Score=150.65  Aligned_cols=279  Identities=12%  Similarity=-0.009  Sum_probs=187.3

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED-----TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      +....|.++...|++++|+..+++++...|....     ++..+|.++...|++++|+..++++....+          .
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------~   85 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR----------Q   85 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------H
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH----------h
Confidence            3456799999999999999999999998876542     567899999999999999999887642111          0


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~  154 (507)
                      .+....          ....+..+|.++..+|++++|+..|++++...        |....++.++|.++...|++++|+
T Consensus        86 ~~~~~~----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           86 HDVWHY----------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             TTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCcHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            101000          01115679999999999999999999999875        345567888999999999999999


Q ss_pred             HHHHHHHhcCCCc-----HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC-CChhHhH--HHHHHHHHhhccHHHH
Q psy12000        155 EQVAMYLAQKPTS-----RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLI-DVIPESR--LNLVIYHLKQEEHQEA  226 (507)
Q Consensus       155 ~~~~~~l~~~p~~-----~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~A  226 (507)
                      ..+++++...|..     ..++..++.++...|++++|...++.... ...... +......  ..++.++...|++++|
T Consensus       156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  234 (373)
T 1hz4_A          156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSDWISNANKVRVIYWQMTGDKAAA  234 (373)
T ss_dssp             HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence            9999999877653     22344455555666666666665555432 101100 0000001  1222335555666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000        227 FDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSS  306 (507)
Q Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~  306 (507)
                      ...+.+.....+..                                    .......+..+|.++...|++++|+..++.
T Consensus       235 ~~~~~~a~~~~~~~------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  278 (373)
T 1hz4_A          235 ANWLRHTAKPEFAN------------------------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEE  278 (373)
T ss_dssp             HHHHHHSCCCCCTT------------------------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCc------------------------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555432211100                                    000001223578899999999999999988


Q ss_pred             hhhhcCC------CchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        307 IKSYYTS------DDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       307 ~~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      +....+.      ...+...+|.++...|++++|...|++++.
T Consensus       279 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          279 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            7654322      123667789999999999999999998864

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.74  E-value=2e-16  Score=143.77  Aligned_cols=200  Identities=11%  Similarity=0.063  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI---ALNLK  174 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~~  174 (507)
                      +.++.+|..++..|+|++|+..|++++...|++   ..+++.+|.+++.+|++++|+..|+++++.+|+++.   ++..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            447889999999999999999999999999876   478999999999999999999999999999999875   66777


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHh
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTI  251 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~  251 (507)
                      |.+++..+..                     ....+..++..+..+|++++|+..++++.   |.++......    ..+
T Consensus        85 g~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l  139 (225)
T 2yhc_A           85 GLTNMALDDS---------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRL  139 (225)
T ss_dssp             HHHHHHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHH
T ss_pred             HHHHHhhhhh---------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHH
Confidence            7776554321                     01223456667778999999999998764   4443322111    111


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhh
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCAL  328 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~  328 (507)
                      +...   ..+.                   .....+|.+|+..|++++|+..|+++.+..|+++   .+++.+|.+|.++
T Consensus       140 ~~~~---~~~~-------------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          140 VFLK---DRLA-------------------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHH---HHHH-------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHH---HHHH-------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            1000   0000                   1123579999999999999999999999999875   5688899999999


Q ss_pred             CCHHHHHHHHHhhcccCCC
Q psy12000        329 GQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       329 g~~~~A~~~~~~~~~~~~~  347 (507)
                      |++++|++.++++....|.
T Consensus       198 g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          198 QMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             TCHHHHHHHHHHHHHCCSC
T ss_pred             CCcHHHHHHHHHHHhhCCC
Confidence            9999999999988755443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.74  E-value=1.3e-16  Score=157.04  Aligned_cols=244  Identities=11%  Similarity=0.007  Sum_probs=161.8

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCC------CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPN------PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      .++.|..++..|+|++|+..|+++++..+      ..+.+++.+|.++...|++++|+..++++......          
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~----------  173 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN----------  173 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh----------
Confidence            45689999999999999999999998743      23468899999999999999999999886421110          


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQEQ  156 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~  156 (507)
                      ......         .....+..+|.++...|++++|+++|++++...+      ....++.++|.+|..+|++++|++.
T Consensus       174 ~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~  244 (378)
T 3q15_A          174 HPLYSI---------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH  244 (378)
T ss_dssp             STTCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCchh---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            000000         0012267899999999999999999999998743      2346889999999999999999999


Q ss_pred             HHHHHh-----cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHH
Q psy12000        157 VAMYLA-----QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLI  230 (507)
Q Consensus       157 ~~~~l~-----~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l  230 (507)
                      +++++.     .+|....++..+|.+++..|++++|...+++... ..... .+........++.+|...++        
T Consensus       245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~ly~~~~~--------  315 (378)
T 3q15_A          245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD-HITARSHKFYKELFLFLQAVYKETVD--------  315 (378)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTCCSCHHHHHHHHHHHHSSSCC--------
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhCCCc--------
Confidence            999987     5665555555555555555555555555554432 11111 11111112223333333333        


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh
Q psy12000        231 KNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY  310 (507)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~  310 (507)
                                                 ...+.+|+.+++.....   ++.......+|.+|...|++++|+.+|+++...
T Consensus       316 ---------------------------~~~~~~al~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          316 ---------------------------ERKIHDLLSYFEKKNLH---AYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             ---------------------------HHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                                       13345555555442211   111122346899999999999999999887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=2.5e-16  Score=150.36  Aligned_cols=195  Identities=16%  Similarity=0.085  Sum_probs=130.9

Q ss_pred             cchhhHHHHHHHhhcC------H----HHHHHHHHHHhcCCCCChhhHHHHHHHHHhh-------ccH-------HHHHH
Q psy12000          6 SLTDAWLGYCHFHLGQ------Y----KQALGIYETLRHLPNPPEDTEFNIASCYFYL-------GMY-------LQANQ   61 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~------~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------g~~-------~eA~~   61 (507)
                      .+..+|..++-+...+      .    ++|+..|+++++.+|.++++|+.+|..+...       |++       ++|+.
T Consensus         6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~   85 (308)
T 2ond_A            6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN   85 (308)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence            3456777777776553      3    7899999999999999999999999998753       664       77777


Q ss_pred             HHHhCCC-CccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH-HHHH
Q psy12000         62 ILEKVPP-SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVY  139 (507)
Q Consensus        62 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~  139 (507)
                      .++++.. ..+..                          +..+..+|.++...|++++|+.+|++++...|+++. ++..
T Consensus        86 ~~~rAl~~~~p~~--------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  139 (308)
T 2ond_A           86 IYERAISTLLKKN--------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ  139 (308)
T ss_dssp             HHHHHHTTTTTTC--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHH
T ss_pred             HHHHHHHHhCccc--------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHH
Confidence            7777655 23322                          122556777778888888888888888888887776 7888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh-ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHH
Q psy12000        140 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK-LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHL  218 (507)
Q Consensus       140 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  218 (507)
                      +|.++.+.|++++|+..|+++++.+|.....+...+.+.+. .|+.+.|...|+++++     ..|..+.++.+++.++.
T Consensus       140 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~  214 (308)
T 2ond_A          140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----KYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHH
Confidence            88888888888888888888888877765544433333221 4555555555555432     11223444444555554


Q ss_pred             hhccHHHHHHHHH
Q psy12000        219 KQEEHQEAFDLIK  231 (507)
Q Consensus       219 ~~~~~~~A~~~l~  231 (507)
                      ..|++++|...++
T Consensus       215 ~~g~~~~A~~~~~  227 (308)
T 2ond_A          215 HLNEDNNTRVLFE  227 (308)
T ss_dssp             TTCCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHH
Confidence            4555555444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.73  E-value=7.4e-16  Score=151.13  Aligned_cols=309  Identities=8%  Similarity=-0.068  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI------AL  171 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------a~  171 (507)
                      ...+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|....      +.
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            56788999999999999999999999887543     36778999999999999999999999876543321      24


Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHHhh--C-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILVSI--L-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQ  248 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~  248 (507)
                      ..++.++...|++++|...++..+...  . ....+....++.++|.++...|++++|...+.+.               
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------  161 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---------------  161 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence            556777777788888777777654311  0 0001223445666777777777777777666542               


Q ss_pred             HHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--Cc-hHHH----HH
Q psy12000        249 VTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DD-SFNF----NF  321 (507)
Q Consensus       249 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~-~~~~----~l  321 (507)
                                      +......   . .+....++..+|.++...|++++|+.+++++....+.  .+ .+..    .+
T Consensus       162 ----------------l~~~~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  221 (373)
T 1hz4_A          162 ----------------IEVLSSY---Q-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR  221 (373)
T ss_dssp             ----------------HHHTTTS---C-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ----------------HHHhhcc---C-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence                            1111000   0 0111233446899999999999999999988765332  21 1211    24


Q ss_pred             HHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHH
Q psy12000        322 AQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS  401 (507)
Q Consensus       322 g~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  401 (507)
                      +.++...|++++|...+.+++...+......              .             .             ....++.
T Consensus       222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~-------------~-------------~~~~la~  261 (373)
T 1hz4_A          222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFL--------------Q-------------G-------------QWRNIAR  261 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG--------------H-------------H-------------HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCCCCcchhh--------------H-------------H-------------HHHHHHH
Confidence            4568899999999999999876543211000              0             0             0022345


Q ss_pred             HHHhHhhHHHHHHHHHHHhhcCCc------hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        402 IHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       402 ~~~~~~~~~~Ai~~~~~~l~~~p~------~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      ++...|++++|+..+++++...+.      ...+...+|.++..+|++++|...+++++...+..       +.+.+-+.
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-------g~~~~~~~  334 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-------GFISHFVI  334 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------CCCHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-------cHHHHHHH
Confidence            666679999999999998865432      23467788999999999999999999999876542       23333345


Q ss_pred             ChHHHHHHHHHHHHhCCC
Q psy12000        476 TSRAAENQLKPILVSAGP  493 (507)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~  493 (507)
                      .|......++.++...|-
T Consensus       335 ~g~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          335 EGEAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             THHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHHHHHhCCCC
Confidence            677777788888888885

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.72  E-value=1.4e-16  Score=138.98  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=136.7

Q ss_pred             CCCCccch--hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHH
Q psy12000          1 MGNADSLT--DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFH   78 (507)
Q Consensus         1 ~~~~~~~~--~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~   78 (507)
                      ||..+...  .+.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------   74 (186)
T 3as5_A            1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------   74 (186)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             CCccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence            44444333  4457999999999999999999999999999999999999999999999999998876432111      


Q ss_pred             HHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         79 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                                          .+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|++.++
T Consensus        75 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  134 (186)
T 3as5_A           75 --------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK  134 (186)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence                                122356789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        159 MYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       159 ~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      +++..+|+++.++..++.++...|++++|...++.+
T Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999988877666666666666666666665554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=6.2e-17  Score=153.94  Aligned_cols=167  Identities=20%  Similarity=0.055  Sum_probs=126.8

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRH--------LPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL   79 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~   79 (507)
                      +...+|.+++..|++++|+..|+++++        ..|....++..+|.++...|++++|+..++++....         
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------   99 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR---------   99 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence            456689999999999999999999998        466777889999999999999999999998763210         


Q ss_pred             HHhc--CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCC
Q psy12000         80 SHKL--GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDY  149 (507)
Q Consensus        80 ~~~~--~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~  149 (507)
                       ...  .+.          ......+..+|.++...|++++|+.+|++++...        |....++..+|.++...|+
T Consensus       100 -~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  168 (311)
T 3nf1_A          100 -EKTLGKDH----------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK  168 (311)
T ss_dssp             -HHHHCTTC----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred             -HHHhCCCC----------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence             000  000          0011236789999999999999999999999874        6677889999999999999


Q ss_pred             HHHHHHHHHHHHhc--------CCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        150 YDVSQEQVAMYLAQ--------KPTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       150 ~~~A~~~~~~~l~~--------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      +++|++.+++++..        +|....++..++.++...|++++|...++++
T Consensus       169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999876        4443444444555555555555555544443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.71  E-value=3.4e-16  Score=142.18  Aligned_cols=188  Identities=10%  Similarity=0.016  Sum_probs=143.8

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc---hHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhh--hhhhcc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDD---SFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVY--ISHLTK  358 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~  358 (507)
                      +..+|..++..|+|++|+..|+++....|+++   .+++++|.+|+.+|++++|+..|+++++..|.+....  ..++|.
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~   86 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL   86 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence            45689999999999999999999998888764   5788899999999999999999999986655443211  111232


Q ss_pred             cCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhH--------
Q psy12000        359 CSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALN--------  430 (507)
Q Consensus       359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~--------  430 (507)
                      ++...+.             .  ...          ....++.+....|++++|+..|+++++..|+++.+.        
T Consensus        87 ~~~~~~~-------------~--~~~----------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~  141 (225)
T 2yhc_A           87 TNMALDD-------------S--ALQ----------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF  141 (225)
T ss_dssp             HHHHHHC---------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHhhhh-------------h--hhh----------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence            2221110             0  000          001122344446899999999999999999987543        


Q ss_pred             ---------HHHHhhccccccchhHHHHHHHHHhcCCCch---hhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCcc
Q psy12000        431 ---------VYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR---IALNLKACNTYKLFTSRAAENQLKPILVSAGPRVR  496 (507)
Q Consensus       431 ---------~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (507)
                               ..+|.+|++.|++++|+..|+++++.+|+++   .++..++.+++.+++.+.|+..++.+....|.+++
T Consensus       142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                     5689999999999999999999999999987   67899999999999999999999999998888754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.71  E-value=4e-16  Score=139.87  Aligned_cols=170  Identities=16%  Similarity=0.072  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY----------------GAMCYYKLDYYDVSQEQVAMYLAQ  163 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~~  163 (507)
                      ++.++..|..+...|++++|+..|++++..+|+++.+++.                +|.++..+|++++|+..|+++++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3447789999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH--HHHHHHHhcCCCChHHH
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ--EAFDLIKNLEPSVPQEY  241 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~l~~~~~~~~~~~  241 (507)
                      +|+++.++..+|.+++..|++++|+..++++++     ..|..+.++.++|.+|...|+.+  ++...+.++...+|.  
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--  156 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-----LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM--  156 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--
Confidence            999998877777777777777777777766542     34445566666666655544322  222222222111111  


Q ss_pred             HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc
Q psy12000        242 ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD  315 (507)
Q Consensus       242 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~  315 (507)
                                                             ..++..+|.++...|+|++|+.+|+++.+..|+..
T Consensus       157 ---------------------------------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          157 ---------------------------------------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             ---------------------------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence                                                   11233567788888899999999999888888653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.71  E-value=2.5e-16  Score=147.29  Aligned_cols=247  Identities=15%  Similarity=0.020  Sum_probs=152.9

Q ss_pred             HhhcCHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         17 FHLGQYKQALGIYETLRHL--------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        17 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      ...|++++|+..|+++++.        .|..+.++..+|.++...|++++|+..++++...          .........
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~   81 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI----------REKTLGKDH   81 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------HHHHcCCcc
Confidence            3467777777777777762        3566788999999999999999999999876321          000000000


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                              ......+..+|.++...|++++|+.+|++++..        +|....++.++|.++..+|++++|++.++++
T Consensus        82 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           82 --------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             --------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                    001123678999999999999999999999988        5778899999999999999999999999998


Q ss_pred             HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000        161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       161 l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~  240 (507)
                      +....                               +......+....++.++|.+|..+|++++|+..+.+.....+..
T Consensus       154 l~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          154 LEIYA-------------------------------TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             HHHHH-------------------------------HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------------------------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            76510                               00001112223456778888888888888888776531110000


Q ss_pred             HHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh------cCHHHHHHHHHHhhhhcCCC
Q psy12000        241 YILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL------RSFKDVILYLSSIKSYYTSD  314 (507)
Q Consensus       241 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~Ai~~~~~~~~~~~~~  314 (507)
                               ..+.                      ..+.....+..++..+...      ..+.++..+++.+....|..
T Consensus       203 ---------~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          203 ---------EFGS----------------------VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             ---------HSSS----------------------CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             ---------cCCC----------------------cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence                     0000                      0000011111122222222      22444444444444333444


Q ss_pred             chHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        315 DSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      ..++..+|.+|..+|++++|+.+|++++.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56677789999999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=4.5e-16  Score=139.53  Aligned_cols=185  Identities=12%  Similarity=-0.019  Sum_probs=144.8

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+..+..|..++..|++++|+..|+++++.+|+++++++..+.                  .....   .          
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~~~~---~----------   52 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV------------------DKNSE---I----------   52 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS------------------CTTSH---H----------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh------------------cchhh---h----------
Confidence            4456778999999999999999999999999998887766431                  00000   0          


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                   .+.....+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++..+|
T Consensus        53 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           53 -------------SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             -------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                         0111456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhhccCh--HHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000        166 TSRIALNLKACNTYKLFTS--RAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~--~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~  240 (507)
                      +++.+++.+|.+++..+..  +.+...+..+.      .++....+++++|.++...|+|++|+..+++....+|..
T Consensus       120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            9999999999988776543  33444443321      111122467889999999999999999999876666653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.70  E-value=1.1e-16  Score=149.70  Aligned_cols=254  Identities=15%  Similarity=0.070  Sum_probs=159.4

Q ss_pred             HhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccC
Q psy12000        112 LRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~  183 (507)
                      ..|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++....                  
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------   74 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE------------------   74 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------------------
Confidence            346667777777777663        367788999999999999999999999999875420                  


Q ss_pred             hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHH
Q psy12000        184 SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKA  263 (507)
Q Consensus       184 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  263 (507)
                                   +......+..+.++.++|.+|..+|++++|+..+.+..                             
T Consensus        75 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------  112 (283)
T 3edt_B           75 -------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----------------------------  112 (283)
T ss_dssp             -------------HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------
T ss_pred             -------------HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------
Confidence                         00001112234567888999999999999988876431                             


Q ss_pred             HHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh--------cCCCchHHHHHHHHHHhhCCHHHHH
Q psy12000        264 AQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY--------YTSDDSFNFNFAQAKCALGQYKEAE  335 (507)
Q Consensus       264 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~  335 (507)
                        ..++.... +..+....++..+|.++...|++++|+.+++++...        .|....++.++|.++..+|++++|+
T Consensus       113 --~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          113 --EIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             --HHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             --HHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence              11111100 001222334557899999999999999999988776        3444567788999999999999999


Q ss_pred             HHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000        336 EMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  415 (507)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~  415 (507)
                      .+|++++...+...      .+.........-...........                       .......+.++...
T Consensus       190 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  240 (283)
T 3edt_B          190 TLYKEILTRAHEKE------FGSVNGDNKPIWMHAEEREESKD-----------------------KRRDSAPYGEYGSW  240 (283)
T ss_dssp             HHHHHHHHHHHHHH------SSSCCSSCCCHHHHHHHHHHTTC-----------------------CCCC----------
T ss_pred             HHHHHHHHHHHHhc------CCCcchhHHHHHHHHHHHHhcCC-----------------------chhHHHHHHHHHHH
Confidence            99999874321100      00000000000000000000000                       00001346777777


Q ss_pred             HHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcC
Q psy12000        416 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  457 (507)
Q Consensus       416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~  457 (507)
                      ++.+....|+.+.++..+|.+|.++|++++|+..+++++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            777777888888999999999999999999999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.69  E-value=7.4e-16  Score=134.36  Aligned_cols=167  Identities=11%  Similarity=0.041  Sum_probs=144.5

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      +..+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++...+.+...+           
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------   79 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA-----------   79 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-----------
Confidence            345789999999999999999999988888888889999999999999999999999875543322111           


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                                                       ..++.++...|++++|+..|++++...|+++.++..+|.+|.+.|++
T Consensus        80 ---------------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  126 (186)
T 3as5_A           80 ---------------------------------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF  126 (186)
T ss_dssp             ---------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             ---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH
Confidence                                             22345666778999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        444 DVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       444 ~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      ++|+..++++++..|+++.++..++.+++..++.+.|...++..++..|.+
T Consensus       127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999999999999999999999988876

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.68  E-value=1.5e-15  Score=143.77  Aligned_cols=227  Identities=11%  Similarity=-0.067  Sum_probs=157.7

Q ss_pred             CHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcH
Q psy12000         21 QYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  100 (507)
Q Consensus        21 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  100 (507)
                      ++++|+..|+++              |.++...|++++|+..+.++...          ....++...          ..
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~----------~a   77 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADY----------QKKAGNEDE----------AG   77 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHH----------HHHTTCHHH----------HH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH----------HHHhCCHHH----------HH
Confidence            488888888877              66788899999999998876321          111111110          01


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12000        101 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSRIALNL  173 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~a~~~  173 (507)
                      ..+..+|.+|..+|++++|+.+|++++...|..      ..++.++|.+|... |++++|+..|++++...|.....   
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---  154 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---  154 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---
Confidence            236789999999999999999999999988743      46788999999996 99999999999998876643210   


Q ss_pred             HhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh
Q psy12000        174 KACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ  253 (507)
Q Consensus       174 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~  253 (507)
                                                    .....++.++|.++..+|+|++|+..+.+.....|....           
T Consensus       155 ------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------  193 (292)
T 1qqe_A          155 ------------------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-----------  193 (292)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-----------
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-----------
Confidence                                          001245778999999999999999888764211111000           


Q ss_pred             ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCch-----HHHHHHHHHH--
Q psy12000        254 DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDS-----FNFNFAQAKC--  326 (507)
Q Consensus       254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~-----~~~~lg~~~~--  326 (507)
                                            ........+..+|.++..+|++++|+.+++++....|+...     .+..++.++.  
T Consensus       194 ----------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~  251 (292)
T 1qqe_A          194 ----------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG  251 (292)
T ss_dssp             ----------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred             ----------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence                                  00000012345789999999999999999999998886543     2344566665  


Q ss_pred             hhCCHHHHHHHHHhhcccCCC
Q psy12000        327 ALGQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       327 ~~g~~~~A~~~~~~~~~~~~~  347 (507)
                      ..+++++|+..|++++..+|.
T Consensus       252 ~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          252 DSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             CTTTHHHHHHHHTTSSCCCHH
T ss_pred             CHHHHHHHHHHhccCCccHHH
Confidence            467899999999998776653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.68  E-value=7e-16  Score=134.29  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=132.5

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      .+.+..+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++....+ ....       
T Consensus         4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~-------   75 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY-------   75 (176)
T ss_dssp             --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-------
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-------
Confidence            34566788999999999999999999999999999999999999999999999999999999876443 2100       


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASI-HFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                                         ...++.+ +...++..+|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++
T Consensus        76 -------------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  136 (176)
T 2r5s_A           76 -------------------KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK  136 (176)
T ss_dssp             -------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -------------------HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                               0111222 12234445689999999999999999999999999999999999999999999


Q ss_pred             cCCCc--HHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        163 QKPTS--RIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       163 ~~p~~--~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      .+|+.  +.++..++.++...|+.++|...+.+.
T Consensus       137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            99976  446777777777777777777766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.67  E-value=4.8e-15  Score=140.25  Aligned_cols=207  Identities=13%  Similarity=-0.063  Sum_probs=155.0

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNP------PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      +...|.+|...|+|++|+..|+++++..+.      .+.++..+|.++..+|++++|+.+++++....          ..
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------~~  109 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF----------TH  109 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------HH
Confidence            444688999999999999999999987432      24688999999999999999999998874311          11


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHhcCCHHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLR-CHYQEAIDIYKRILLDHKDL------LALNVYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~  155 (507)
                      .++....          ...+..+|.+|... |++++|+.+|++++...|+.      ..++.++|.++..+|++++|+.
T Consensus       110 ~g~~~~~----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  179 (292)
T 1qqe_A          110 RGQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (292)
T ss_dssp             TTCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHH----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            1111110          12266899999996 99999999999999998754      4678899999999999999999


Q ss_pred             HHHHHHhcCCCcHH-------HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhH-----hHHHHHHHHH--hhc
Q psy12000        156 QVAMYLAQKPTSRI-------ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE-----SRLNLVIYHL--KQE  221 (507)
Q Consensus       156 ~~~~~l~~~p~~~~-------a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~~  221 (507)
                      .|++++...|++..       ++..++.++...|++++|+..+++++     ...|..+.     ....++..+.  ..+
T Consensus       180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~l~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ-----SEDPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-----CC---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            99999999888754       35566778888899999988888653     22222222     2334555554  467


Q ss_pred             cHHHHHHHHHhcCCCChHH
Q psy12000        222 EHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       222 ~~~~A~~~l~~~~~~~~~~  240 (507)
                      ++++|+..+.++...+|..
T Consensus       255 ~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          255 QLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             THHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHhccCCccHHHH
Confidence            7889998888776666653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.9e-15  Score=160.08  Aligned_cols=211  Identities=11%  Similarity=0.004  Sum_probs=162.5

Q ss_pred             cCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHh
Q psy12000         34 HLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR  113 (507)
Q Consensus        34 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~  113 (507)
                      ..+|+++.+++..|   ...|++++|+..++++.......      .... +           .+..+.++.+|.++...
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~------~~~~-~-----------p~~~~~~~~~a~~~~~~  446 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA------DGVD-F-----------SESVELPLMEVRALLDL  446 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------------C-C-----------TTCSHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc------cccc-c-----------ccchhHHHHHHHHHHhc
Confidence            56888888888777   78999999999998875110000      0000 0           01123367899999999


Q ss_pred             hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000        114 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP  193 (507)
Q Consensus       114 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~  193 (507)
                      |++++|+..|+++++.+|++..+++++|.++..+|++++|++.|+++++.+|++..++..+|.++...|++++ +..+++
T Consensus       447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~  525 (681)
T 2pzi_A          447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT  525 (681)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred             CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 999988


Q ss_pred             HHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCC---CChHHHHHHHHHHHHhhhccCc-HHHHHHHHHHHH
Q psy12000        194 ILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEP---SVPQEYILKAVVQVTIGQDTGS-REMVKAAQALFQ  269 (507)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~  269 (507)
                      +++     ..|..+.+++++|.++...|++++|+..+++...   .++..+..++.++...+....+ .+.+++|.+.+.
T Consensus       526 al~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~  600 (681)
T 2pzi_A          526 VWS-----TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE  600 (681)
T ss_dssp             HHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred             HHH-----hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence            753     4567788999999999999999999999998654   4444555555555443332222 455666666554


Q ss_pred             Hh
Q psy12000        270 LV  271 (507)
Q Consensus       270 ~~  271 (507)
                      .+
T Consensus       601 ~~  602 (681)
T 2pzi_A          601 AL  602 (681)
T ss_dssp             TS
T ss_pred             hC
Confidence            43

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.64  E-value=3.5e-15  Score=140.77  Aligned_cols=163  Identities=15%  Similarity=0.060  Sum_probs=139.5

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+..+.+|..+...|++++|+..|+++++.+|+++++++.+|.++...|++++|+..++++....+...           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------  185 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-----------  185 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-----------
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-----------
Confidence            456677899999999999999999999999999999999999999999999999999999875443221           


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                                     ...+..+..+...++.++|+..|++++..+|+++.+++++|.++...|++++|+..|.++++.+|
T Consensus       186 ---------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          186 ---------------YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL  250 (287)
T ss_dssp             ---------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ---------------HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence                           01344566678889999999999999999999999999999999999999999999999999999


Q ss_pred             Cc--HHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        166 TS--RIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       166 ~~--~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      ++  ..+...++.++...|+.++|...+++.
T Consensus       251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          251 TAADGQTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            98  666676777777777777776665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.64  E-value=8.5e-16  Score=125.69  Aligned_cols=119  Identities=15%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             HhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHH
Q psy12000         32 LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF  111 (507)
Q Consensus        32 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~  111 (507)
                      +..++|+.++.+..+|.++++.|+|++|+..|+++....+..                          +..+..+|.++.
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~~~~~~~   58 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--------------------------AILYSNRAACLT   58 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHhhHHH
Confidence            445677777788888888888888888888877764322211                          223567788888


Q ss_pred             HhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        112 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      .+|++++|+..|+++++.+|+++.+++++|.++..+|++++|++.|+++++.+|++..+...++.
T Consensus        59 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            88888888888888888899888888899999999999999999999999999988877654443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.64  E-value=9.9e-15  Score=141.88  Aligned_cols=307  Identities=10%  Similarity=0.045  Sum_probs=135.5

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      +++.+...+|.++...|++++|++.|.++     .++..+..++.++...|++++|+.+++.+.+......+...+...+
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y  104 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            34456666999999999999999999764     3445888999999999999999999888765321111111222222


Q ss_pred             CChhHHHHHHHHHhh-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000         84 GDEKSLMEYHQKLED-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      ...+.+....+.+.. ....+..+|..++..|+|++|+.+|.++        ..+..+|.|+.++|++++|++.++++  
T Consensus       105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA--  174 (449)
T 1b89_A          105 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA--  174 (449)
T ss_dssp             ----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred             HHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence            222333332222222 2235889999999999999999999987        45778999999999999999999998  


Q ss_pred             cCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChH
Q psy12000        163 QKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQ  239 (507)
Q Consensus       163 ~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~  239 (507)
                         .++.++..........|+++.|.....        .+. ..|+-...++.+|.+.|++++|+.++++.   ++....
T Consensus       175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l--------~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~  242 (449)
T 1b89_A          175 ---NSTRTWKEVCFACVDGKEFRLAQMCGL--------HIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG  242 (449)
T ss_dssp             ---TCHHHHHHHHHHHHHTTCHHHHHHTTT--------TTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH
T ss_pred             ---CCchhHHHHHHHHHHcCcHHHHHHHHH--------HHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH
Confidence               355555554455567889999964332        222 45555667889999999999999999875   344444


Q ss_pred             HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcc---cccchhhhhHHHHHHHhhcCHHHHHHHHHHh-hh------
Q psy12000        240 EYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQS---ECDTVPGRQCMASSFFLLRSFKDVILYLSSI-KS------  309 (507)
Q Consensus       240 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~-~~------  309 (507)
                      .+...+..+...     ..+.+.+.++.|....+.+.   .+.....|..+..+|...++|+.|+...-.- ..      
T Consensus       243 ~ftel~il~~ky-----~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~  317 (449)
T 1b89_A          243 MFTELAILYSKF-----KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ  317 (449)
T ss_dssp             HHHHHHHHHHTT-----CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHH
T ss_pred             HHHHHHHHHHhc-----CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHH
Confidence            555555555433     34566667776643222211   0112223445788899999999998732221 11      


Q ss_pred             -----hcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhccc
Q psy12000        310 -----YYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNE  344 (507)
Q Consensus       310 -----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~  344 (507)
                           ..+.+...+|....-|.  ++.+..+..+..++.+
T Consensus       318 f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~  355 (449)
T 1b89_A          318 FKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP  355 (449)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG
T ss_pred             HHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh
Confidence                 12334455554444444  6667777777777644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.63  E-value=2.3e-16  Score=133.10  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=111.4

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      +...+++-.+-..++++++.+|+++++++.+|.+++..|++++|+..|+++....|.+                      
T Consensus        12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----------------------   69 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----------------------   69 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred             HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------
Confidence            3444555566677889999999999999999999999999999999999875433322                      


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                          +..++.+|.++...|+|++|+..|++++..+|+++.+++++|.|+..+|++++|+..|++++...|+.+
T Consensus        70 ----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           70 ----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                233778999999999999999999999999999999999999999999999999999999999999876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.62  E-value=1.4e-15  Score=124.35  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=94.7

Q ss_pred             hhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHH
Q psy12000        308 KSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQ  387 (507)
Q Consensus       308 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  387 (507)
                      ..++|+....+.++|.+|+++|+|++|++.|++++..+|.+...+                                   
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------------------------   50 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY-----------------------------------   50 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------------
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------------------------
Confidence            345666667778889999999999999999988876655433222                                   


Q ss_pred             HhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        388 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       388 ~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                               ..+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|++.|+++++++|+++.+...+
T Consensus        51 ---------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           51 ---------SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             ---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ---------HHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence                     22345666778899999999999999999999999999999999999999999999999999999987766


Q ss_pred             Hhh
Q psy12000        468 ACN  470 (507)
Q Consensus       468 ~~~  470 (507)
                      +..
T Consensus       122 ~~~  124 (126)
T 4gco_A          122 RNC  124 (126)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.61  E-value=6e-14  Score=132.12  Aligned_cols=239  Identities=10%  Similarity=-0.091  Sum_probs=182.0

Q ss_pred             HHhhc-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000        111 FLRCH-YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD--YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA  187 (507)
Q Consensus       111 ~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A  187 (507)
                      ...|. .++|+.++.++|..+|++..+++..+.+...+|  ++++++..++.++..+|++..+++.++.+..+       
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~-------  115 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ-------  115 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH-------
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH-------
Confidence            34444 469999999999999999999999999999999  99999999999999999998776644332100       


Q ss_pred             HHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q psy12000        188 ENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQAL  267 (507)
Q Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  267 (507)
                                                                                     +.               
T Consensus       116 ---------------------------------------------------------------~~---------------  117 (306)
T 3dra_A          116 ---------------------------------------------------------------IM---------------  117 (306)
T ss_dssp             ---------------------------------------------------------------HH---------------
T ss_pred             ---------------------------------------------------------------HH---------------
Confidence                                                                           00               


Q ss_pred             HHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHH--HHHHHHHhhcccC
Q psy12000        268 FQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYK--EAEEMFLLVQNEG  345 (507)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~~~~~  345 (507)
                                           ......+++++++.+++++.+.+|.+..++.+++.++...|.++  ++++.+.++++.+
T Consensus       118 ---------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          118 ---------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             ---------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             ---------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence                                 00000145677888888888888888888888999999999888  9999999888777


Q ss_pred             CCchhhh--hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcC
Q psy12000        346 LKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH  423 (507)
Q Consensus       346 ~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~  423 (507)
                      +.+...+  .+++                ...             +...           .....++++++++++++..+
T Consensus       177 ~~N~sAW~~R~~l----------------l~~-------------l~~~-----------~~~~~~~eEl~~~~~aI~~~  216 (306)
T 3dra_A          177 LKNNSAWSHRFFL----------------LFS-------------KKHL-----------ATDNTIDEELNYVKDKIVKC  216 (306)
T ss_dssp             TTCHHHHHHHHHH----------------HHS-------------SGGG-----------CCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHH----------------HHh-------------cccc-----------chhhhHHHHHHHHHHHHHhC
Confidence            6654333  1110                000             0000           00023789999999999999


Q ss_pred             CchhhhHHHHHhhccccccchhHH-HHHHHHHhcC---CCchhhhhHHHhhhhhcCChHHHHHHHHHHHH-hCCCCc
Q psy12000        424 KDLLALNVYGAMCYYKLDYYDVSQ-EQVAMYLAQK---PTSRIALNLKACNTYKLFTSRAAENQLKPILV-SAGPRV  495 (507)
Q Consensus       424 p~~~~~~~~la~~y~~~g~~~~A~-~~~~~~l~~~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  495 (507)
                      |++..+..++++++.+.|+..+++ ++.+++++..   |.++.++..++.++-+.++.+.|...++.+.+ .+|-|.
T Consensus       217 p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~  293 (306)
T 3dra_A          217 PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS  293 (306)
T ss_dssp             SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence            999999999999999999876644 5777777776   88999999999999888888888889999997 688774

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.61  E-value=7e-15  Score=127.90  Aligned_cols=161  Identities=12%  Similarity=0.034  Sum_probs=133.6

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      ...+|..+...|++++|+..++++...+|+++.+++.+|.++..+|++++|+..|++++...| +.... ..+       
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~-~~~-------   79 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK-SLI-------   79 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH-HHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH-HHH-------
Confidence            446899999999999999999999999999999999999999999999999999999986655 32111 000       


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHH-hHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHF-LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY  442 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~  442 (507)
                                                          +.+.. ..+...+|+..|++++..+|+++.+++.+|.++...|+
T Consensus        80 ------------------------------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~  123 (176)
T 2r5s_A           80 ------------------------------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR  123 (176)
T ss_dssp             ------------------------------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             ------------------------------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence                                                00101 11233458999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhcCCCc--hhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000        443 YDVSQEQVAMYLAQKPTS--RIALNLKACNTYKLFTSRAAENQLKPILV  489 (507)
Q Consensus       443 ~~~A~~~~~~~l~~~P~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (507)
                      +++|+..|+++++.+|+.  +.++..++.++..++..+.|...|++.+.
T Consensus       124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999986  55889999999999988888888887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.58  E-value=1.5e-15  Score=128.14  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHH
Q psy12000        302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKS  381 (507)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  381 (507)
                      ..++++...+|++..+++.+|.++..+|++++|+..|++++..+|.+...+                             
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~-----------------------------   73 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI-----------------------------   73 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------------------
Confidence            456677788898888999999999999999999999999987766543322                             


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch
Q psy12000        382 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       382 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~  461 (507)
                                     ..+|.++...|+|++|+..|++++..+|+++.+++++|.||.++|++++|+..|++++++.|+++
T Consensus        74 ---------------~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           74 ---------------MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             ---------------HHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ---------------HHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                           33456777789999999999999999999999999999999999999999999999999999987


Q ss_pred             h
Q psy12000        462 I  462 (507)
Q Consensus       462 ~  462 (507)
                      .
T Consensus       139 ~  139 (151)
T 3gyz_A          139 L  139 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=4.3e-14  Score=130.05  Aligned_cols=233  Identities=11%  Similarity=0.003  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG-------AMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      .+..|.-+ ..++++.|.+.|.+++..+|+..++|..+       +.+...+++..+++..+++.+.+.|....+...+ 
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~-   87 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI-   87 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-
Confidence            44555555 58999999999999999999999999999       8899999999999999999998888765432210 


Q ss_pred             hhhhhccChHHHHHhhHHHHHhhCCCC-CCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhc
Q psy12000        176 CNTYKLFTSRAAENQLKPILVSILPPL-IDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQD  254 (507)
Q Consensus       176 ~~~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~  254 (507)
                           .|-|.+             ... .....+.++.++.++...|+|++|.+.+.......|...             
T Consensus        88 -----~g~y~~-------------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-------------  136 (282)
T 4f3v_A           88 -----GGLYGD-------------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-------------  136 (282)
T ss_dssp             -----CTTTCC-------------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-------------
T ss_pred             -----CCcccc-------------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-------------
Confidence                 000000             000 011223455555555566666666555554433333210             


Q ss_pred             cCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--CchHHHHHHHHHHhhCCHH
Q psy12000        255 TGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--DDSFNFNFAQAKCALGQYK  332 (507)
Q Consensus       255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~  332 (507)
                                                  +.+.+|.++++.++|++|+.+|+.+....++  ...+++++|.++..+|+++
T Consensus       137 ----------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          137 ----------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT  188 (282)
T ss_dssp             ----------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ----------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHH
Confidence                                        1112344555555555555555544332111  0124455555555555555


Q ss_pred             HHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHH
Q psy12000        333 EAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEA  412 (507)
Q Consensus       333 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~A  412 (507)
                      +|+.+|+++                                                                       
T Consensus       189 eAl~~l~~a-----------------------------------------------------------------------  197 (282)
T 4f3v_A          189 EAERRLTEA-----------------------------------------------------------------------  197 (282)
T ss_dssp             HHHHHHHHH-----------------------------------------------------------------------
T ss_pred             HHHHHHHHH-----------------------------------------------------------------------
Confidence            555555554                                                                       


Q ss_pred             HHHHHHHhhcC--Cc-hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        413 IDIYKRILLDH--KD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       413 i~~~~~~l~~~--p~-~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                             +...  |. .+.+.+++|+|+.++|+.++|...|++++..+|+ +.+...+..-.|.+.
T Consensus       198 -------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~  255 (282)
T 4f3v_A          198 -------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLK  255 (282)
T ss_dssp             -------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCC
T ss_pred             -------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCC
Confidence                   3221  33 4455666788888888888888888888888888 777777777777665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.57  E-value=4.3e-14  Score=133.28  Aligned_cols=164  Identities=13%  Similarity=0.044  Sum_probs=139.9

Q ss_pred             hhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCc
Q psy12000        282 PGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSP  361 (507)
Q Consensus       282 ~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  361 (507)
                      .....+|..+...|++++|+..|+++...+|+++.+++++|.++..+|++++|+..|++++..++......         
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---------  188 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG---------  188 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH---------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH---------
Confidence            44567899999999999999999999999999999999999999999999999999999976654221110         


Q ss_pred             cchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc
Q psy12000        362 SRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  441 (507)
Q Consensus       362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g  441 (507)
                                                         ...+..+...++.++|+..|++++..+|+++.+++.+|.+|...|
T Consensus       189 -----------------------------------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g  233 (287)
T 3qou_A          189 -----------------------------------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG  233 (287)
T ss_dssp             -----------------------------------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             -----------------------------------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence                                               001112334577888999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCc--hhhhhHHHhhhhhcCChHHHHHHHHHHHH
Q psy12000        442 YYDVSQEQVAMYLAQKPTS--RIALNLKACNTYKLFTSRAAENQLKPILV  489 (507)
Q Consensus       442 ~~~~A~~~~~~~l~~~P~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (507)
                      ++++|+..|+++++.+|++  +.+...++.++-.++..+.+...|++.+.
T Consensus       234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999  88999999999998888888888887664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=6.2e-14  Score=114.96  Aligned_cols=135  Identities=23%  Similarity=0.283  Sum_probs=118.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .+.+.+|.++...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++....+.              
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------   67 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------   67 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--------------
Confidence            356778999999999999999999999999999999999999999999999999998876421111              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                  .+..+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus        68 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           68 ------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             ------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             ------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence                        12235678999999999999999999999999999999999999999999999999999999998886


Q ss_pred             c
Q psy12000        167 S  167 (507)
Q Consensus       167 ~  167 (507)
                      +
T Consensus       136 ~  136 (136)
T 2fo7_A          136 S  136 (136)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.55  E-value=6e-14  Score=133.72  Aligned_cols=172  Identities=11%  Similarity=-0.052  Sum_probs=127.3

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      .|.+|...|++++|+..|.+++...+.      ...++.++|.+|..+|++++|+..|++++...+.             
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-------------  108 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-------------  108 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-------------
Confidence            467888999999999999999998753      2568889999999999999999999999865332             


Q ss_pred             hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                       .|+...                   ...++.++|.+|.. |++++|+..+++..                         
T Consensus       109 -~g~~~~-------------------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-------------------------  142 (307)
T 2ifu_A          109 -NGTPDT-------------------AAMALDRAGKLMEP-LDLSKAVHLYQQAA-------------------------  142 (307)
T ss_dssp             -TTCHHH-------------------HHHHHHHHHHHHTT-TCHHHHHHHHHHHH-------------------------
T ss_pred             -cCCHHH-------------------HHHHHHHHHHHHHc-CCHHHHHHHHHHHH-------------------------
Confidence             122211                   12457788999988 99999998886531                         


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc------hHHHHHHHHHHhhCCHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD------SFNFNFAQAKCALGQYKE  333 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~------~~~~~lg~~~~~~g~~~~  333 (507)
                            .++.....   ......++..+|.++..+|+|++|+.+|+++....|+..      .+++++|.++..+|++++
T Consensus       143 ------~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          143 ------AVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             ------HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ------HHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence                  11110000   000012234689999999999999999999887655432      356778999999999999


Q ss_pred             HHHHHHhhcccCC
Q psy12000        334 AEEMFLLVQNEGL  346 (507)
Q Consensus       334 A~~~~~~~~~~~~  346 (507)
                      |+..|++++ ..|
T Consensus       214 A~~~~~~al-~~p  225 (307)
T 2ifu_A          214 AQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHT-TST
T ss_pred             HHHHHHHHh-CCC
Confidence            999999998 554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.55  E-value=6.4e-15  Score=124.20  Aligned_cols=123  Identities=11%  Similarity=0.054  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHH
Q psy12000         22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE  101 (507)
Q Consensus        22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (507)
                      +-.+-..|+++++.+|.+.++++.+|.+++..|++++|+..|+++....+.+                          +.
T Consensus         3 ~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~   56 (148)
T 2vgx_A            3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------SR   56 (148)
T ss_dssp             ---CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HH
T ss_pred             ccchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--------------------------HH
Confidence            3344567889999999999999999999999999999999998774322221                          23


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      .++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|++.|++++..+|+++..
T Consensus        57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            367899999999999999999999999999999999999999999999999999999999999987753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.54  E-value=4e-13  Score=126.49  Aligned_cols=139  Identities=12%  Similarity=-0.020  Sum_probs=114.2

Q ss_pred             HhhcCH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc--cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHH
Q psy12000         17 FHLGQY-KQALGIYETLRHLPNPPEDTEFNIASCYFYLG--MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYH   93 (507)
Q Consensus        17 ~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (507)
                      ...|.+ ++|+..+.+++..+|++..+|+..+.++..+|  .+++++.++.++....+++.                   
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-------------------  103 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-------------------  103 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-------------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-------------------
Confidence            445555 68999999999999999999999999999999  99999999887754333221                   


Q ss_pred             HHHhhcHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcC
Q psy12000         94 QKLEDSLEEQLCLASIH----FLR---CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD--VSQEQVAMYLAQK  164 (507)
Q Consensus        94 ~~l~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~  164 (507)
                             ..+...+.++    ...   +++++++.++.+++..+|.+..++++.+.+...+|.++  ++++.+++++..+
T Consensus       104 -------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          104 -------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             -------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence                   1122233333    344   78999999999999999999999999999999999999  9999999999999


Q ss_pred             CCcHHHHHHHhhhhhhc
Q psy12000        165 PTSRIALNLKACNTYKL  181 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~  181 (507)
                      |.+..|+..++.+....
T Consensus       177 ~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          177 LKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             TTCHHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99998887776665443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.54  E-value=6.4e-14  Score=145.48  Aligned_cols=151  Identities=7%  Similarity=-0.057  Sum_probs=96.5

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED   98 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (507)
                      .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++....+..                         
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------   56 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------------------------   56 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------------------------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence            4778888888888888888888888888888888888888888887775433321                         


Q ss_pred             cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhh
Q psy12000         99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  178 (507)
Q Consensus        99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~  178 (507)
                       +..+..+|.++..+|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++.+|++..++..++.++
T Consensus        57 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           57 -PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR  135 (568)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             1225567777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhc---cChHHHHHhhHHHH
Q psy12000        179 YKL---FTSRAAENQLKPIL  195 (507)
Q Consensus       179 ~~~---~~~~~A~~~l~~~~  195 (507)
                      ...   |++++|...+++++
T Consensus       136 ~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          136 RRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHTTCCTTHHHHHHHHHHHH
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            777   77777777666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.53  E-value=2.6e-12  Score=121.55  Aligned_cols=164  Identities=7%  Similarity=-0.059  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCC-HHHHHHHHHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHH
Q psy12000        297 FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQ-YKEAEEMFLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLS  373 (507)
Q Consensus       297 ~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~  373 (507)
                      +++++.+++++.+.+|.+..++.+++.+....|. ++++++++.+++..+|.+...+  .+.                +.
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~----------------ll  189 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC----------------LL  189 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH----------------HH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------HH
Confidence            5666666777777777666666667777777776 4777777777665555443222  211                00


Q ss_pred             HHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccc-----------cc
Q psy12000        374 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKL-----------DY  442 (507)
Q Consensus       374 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~-----------g~  442 (507)
                      .++......       ..         ..-...+.++++++++++++..+|++..+.+++.+++.+.           +.
T Consensus       190 ~~l~~~~~~-------~~---------~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~  253 (331)
T 3dss_A          190 PQLHPQPDS-------GP---------QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV  253 (331)
T ss_dssp             HHHSCCC----------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred             HHhhhcccc-------cc---------ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence            111000000       00         0000125689999999999999999999887776666665           56


Q ss_pred             chhHHHHHHHHHhcCCCchhhhhHHHhhhh-----hcCChHHHHHHHHHHHHhCCCC
Q psy12000        443 YDVSQEQVAMYLAQKPTSRIALNLKACNTY-----KLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       443 ~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      ++++++.++++++.+||+.  +.+++.+.+     .....+....-+.+|.+.+|-|
T Consensus       254 l~~el~~~~elle~~pd~~--w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r  308 (331)
T 3dss_A          254 LQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  308 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhhCcccc--hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence            8899999999999999995  445544433     1233445566899999999987

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.52  E-value=1e-13  Score=144.00  Aligned_cols=164  Identities=9%  Similarity=-0.059  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                      +.+++|+..+++....  .++...++..+|.++...|++++|+.+++++...+|++..+++++|.+|..+|++++|++.|
T Consensus         3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4677888888765433  34445667789999999999999999999999999999888999999999999999999999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR  418 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~  418 (507)
                      ++++..++.+...                                            ...++.++...|++++|+..|++
T Consensus        81 ~~al~~~p~~~~~--------------------------------------------~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           81 QQASDAAPEHPGI--------------------------------------------ALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             HHHHHHCTTCHHH--------------------------------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHH--------------------------------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9987655432111                                            13356688888999999999999


Q ss_pred             HhhcCCchhhhHHHHHhhcccc---ccchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000        419 ILLDHKDLLALNVYGAMCYYKL---DYYDVSQEQVAMYLAQKPTSRIALNLKA  468 (507)
Q Consensus       419 ~l~~~p~~~~~~~~la~~y~~~---g~~~~A~~~~~~~l~~~P~~~~a~~~~~  468 (507)
                      +++.+|+++.++..+|.++..+   |++++|++.++++++.+|++...+.+++
T Consensus       117 al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            9999999999999999999999   9999999999999999999999888777

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.51  E-value=4.3e-13  Score=127.76  Aligned_cols=140  Identities=9%  Similarity=-0.037  Sum_probs=103.6

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--C----chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTS--D----DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLT  357 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  357 (507)
                      +..+|.+|...|++++|+.+++++....+.  +    ..++.++|.+|.. |++++|+.+|++++...+           
T Consensus        79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~-----------  146 (307)
T 2ifu_A           79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE-----------  146 (307)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----------
Confidence            345788999999999999999988766432  1    2456789999999 999999999999864321           


Q ss_pred             ccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchh------hhHH
Q psy12000        358 KCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNV  431 (507)
Q Consensus       358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~------~~~~  431 (507)
                                       ..++.......          ...++.++...|+|++|+.+|++++...|+..      ..+.
T Consensus       147 -----------------~~~~~~~~~~~----------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          147 -----------------NEERLRQAAEL----------IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             -----------------HTTCHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----------------hCCChhHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence                             11111111111          13345677788999999999999998765442      3667


Q ss_pred             HHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000        432 YGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       432 ~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a  463 (507)
                      .+|.++..+|++++|+..|++++ .+|+...+
T Consensus       200 ~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          200 AQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence            78899999999999999999999 99987644

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.50  E-value=2.5e-14  Score=119.57  Aligned_cols=121  Identities=15%  Similarity=0.081  Sum_probs=101.7

Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHH
Q psy12000         26 LGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLC  105 (507)
Q Consensus        26 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (507)
                      -..|+++++.+|++.+.++.+|.+++..|++++|+..|+++....+.+                          +..++.
T Consensus         4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~   57 (142)
T 2xcb_A            4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--------------------------ARYFLG   57 (142)
T ss_dssp             -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------HHHHHH
T ss_pred             chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--------------------------HHHHHH
Confidence            357888899999999999999999999999999999998764322221                          223678


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      +|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|++.|++++..+|+++....
T Consensus        58 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            9999999999999999999999999999999999999999999999999999999999998876433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.50  E-value=1.5e-13  Score=123.03  Aligned_cols=134  Identities=17%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      -..+.+|.+++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+..++++....+.              
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------   69 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--------------   69 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------------
Confidence            345678999999999999999999996  34 6789999999999999999999999876432111              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------HHHHHHHHHHHhcCCH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----------------ALNVYGAMCYYKLDYY  150 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~  150 (507)
                                  .+..++.+|.++...|++++|+..|++++...|++.                .+++++|.++..+|++
T Consensus        70 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  137 (213)
T 1hh8_A           70 ------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  137 (213)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             ------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence                        123367899999999999999999999999877655                9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHH
Q psy12000        151 DVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       151 ~~A~~~~~~~l~~~p~~~~  169 (507)
                      ++|++.|++++..+|++..
T Consensus       138 ~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          138 KKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHHcCccccc
Confidence            9999999999999998753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=5.4e-15  Score=142.78  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      .+..+|.+++..|+|++|+..|++++..+|++               ..+++++|.|+..+|++++|+..|++++..+|+
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  228 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN  228 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            37789999999999999999999999999998               689999999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFD  228 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  228 (507)
                      ++.+++.+|.+++.+|++++|+..|+++++     ..|..+.++.+++.++...|++++|..
T Consensus       229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          229 NEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998763     356677899999999999999999843

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=4.7e-14  Score=122.64  Aligned_cols=134  Identities=8%  Similarity=-0.015  Sum_probs=112.8

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      +..+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.                    
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------   76 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------------------   76 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------------------
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------
Confidence            344677899999999999999999999999999999999999999999999886432221                    


Q ss_pred             HHHHhhcHHHHHHHHHH-HHHhhcH--HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         93 HQKLEDSLEEQLCLASI-HFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                            .+..+..+|.+ +...|++  ++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.
T Consensus        77 ------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A           77 ------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             ------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             ------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence                  12236678888 7899999  99999999999999999999999999999999999999999999999999865


Q ss_pred             HHH
Q psy12000        170 ALN  172 (507)
Q Consensus       170 a~~  172 (507)
                      ...
T Consensus       151 ~~~  153 (177)
T 2e2e_A          151 RTQ  153 (177)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.49  E-value=3.8e-14  Score=119.39  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=102.2

Q ss_pred             HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000        303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL  382 (507)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  382 (507)
                      .++++...+|++..+++.+|.++...|++++|+..|++++..+|.+...+                              
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------   58 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF------------------------------   58 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------------------------
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH------------------------------
Confidence            56677778888888889999999999999999999999886665433222                              


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                                    ..+|.++...|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..|+++++..|++|.
T Consensus        59 --------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           59 --------------LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             --------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             --------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence                          234557777899999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhH
Q psy12000        463 ALNL  466 (507)
Q Consensus       463 a~~~  466 (507)
                      ....
T Consensus       125 ~~~~  128 (148)
T 2vgx_A          125 FXEL  128 (148)
T ss_dssp             GHHH
T ss_pred             chHH
Confidence            6443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.48  E-value=7e-13  Score=108.54  Aligned_cols=133  Identities=19%  Similarity=0.241  Sum_probs=109.7

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccc
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSR  363 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  363 (507)
                      +..+|.++...|++++|+.+++++....|++..+++.+|.++...|++++|+..|++++...+.....+           
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------   72 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-----------   72 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-----------
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH-----------
Confidence            345788999999999999999999888888887888899999999999999999998865443221111           


Q ss_pred             hhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccc
Q psy12000        364 AKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  443 (507)
Q Consensus       364 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~  443 (507)
                                                       ..++.++...|++++|+..+++++...|+.+.++..+|.+|.+.|++
T Consensus        73 ---------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  119 (136)
T 2fo7_A           73 ---------------------------------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY  119 (136)
T ss_dssp             ---------------------------------HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             ---------------------------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence                                             22344666778999999999999999999888888999999999999


Q ss_pred             hhHHHHHHHHHhcCCCc
Q psy12000        444 DVSQEQVAMYLAQKPTS  460 (507)
Q Consensus       444 ~~A~~~~~~~l~~~P~~  460 (507)
                      ++|+..++.+++.+|++
T Consensus       120 ~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          120 DEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHccCCCC
Confidence            99999999999998874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.46  E-value=1.4e-14  Score=139.87  Aligned_cols=159  Identities=16%  Similarity=0.116  Sum_probs=131.6

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE   97 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (507)
                      .++++++|+..|+++++.+|..+.++..+|.+++..|++++|+..|+++....+....       . ......    .+.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~-~~~~~~----~~~  192 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------F-SNEEAQ----KAQ  192 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------C-CSHHHH----HHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------C-ChHHHH----HHH
Confidence            5677888999999888888999999999999999999999999999987542221100       0 000000    011


Q ss_pred             -hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000         98 -DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus        98 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                       .....++++|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++..+|++..++..++.
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence             1123378999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccChHHHH
Q psy12000        177 NTYKLFTSRAAE  188 (507)
Q Consensus       177 ~~~~~~~~~~A~  188 (507)
                      ++...|++++|.
T Consensus       273 ~~~~~~~~~~a~  284 (336)
T 1p5q_A          273 CQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888888774

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.46  E-value=2.2e-12  Score=120.21  Aligned_cols=189  Identities=8%  Similarity=-0.035  Sum_probs=104.5

Q ss_pred             HHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccCccchhhhHHHHHHHHcCC
Q psy12000        300 VILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCSPSRAKTRLSFHLSHKLGD  378 (507)
Q Consensus       300 Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  378 (507)
                      |+..+++.....+.++..++.+|.++...|++++|+.++.+.++.++ .....-...++.++.+.|+.+.|.+.+.++..
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555555444333333344556666666666666666666554432 11111111223333334444444333322111


Q ss_pred             cHH-HHHHHHHhhhcHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHh
Q psy12000        379 EKS-LMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  455 (507)
Q Consensus       379 ~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~  455 (507)
                      .++ .+..-    +.+--++.-+++....|  ++++|+.+|+++.+..|++......++ ++.++|++++|.+.++.+++
T Consensus       165 ~~~d~~~~~----d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 AIEDTVSGD----NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HSCHHHHHH----HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHS
T ss_pred             cCccccccc----hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence            000 00000    00000122345666666  899999999999888887333233333 89999999999999998877


Q ss_pred             c----------CCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        456 Q----------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       456 ~----------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      .          +|+++.++-.+..+.+.++  +.+.+.++.+.+..|.|.
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg--k~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQG--LDTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTT--CTTHHHHHHHHHTTCCCH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhC--hHHHHHHHHHHHhCCCCh
Confidence            6          4889999833333333333  477888999999999883

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.46  E-value=1.2e-13  Score=115.44  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=100.2

Q ss_pred             HHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHH
Q psy12000        303 YLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSL  382 (507)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  382 (507)
                      .|+++...+|++...++.+|.++...|++++|+..|++++..+|.+...+                              
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------   55 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF------------------------------   55 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------------------------
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH------------------------------
Confidence            45667777787777888899999999999999999999876665433222                              


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        383 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       383 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                                    ..+|.++...|++++|+..|++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.
T Consensus        56 --------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           56 --------------LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             --------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             --------------HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence                          234456777799999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhHHHh
Q psy12000        463 ALNLKAC  469 (507)
Q Consensus       463 a~~~~~~  469 (507)
                      ...++..
T Consensus       122 ~~~~~~~  128 (142)
T 2xcb_A          122 HEALAAR  128 (142)
T ss_dssp             GHHHHHH
T ss_pred             hHHHHHH
Confidence            7554433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=1.1e-12  Score=123.29  Aligned_cols=192  Identities=13%  Similarity=0.062  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+..+|.+++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++..+|++..+++.+|.++...
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            36789999999999999999999999999999999999999999999999999999999999999988777777777777


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV  261 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  261 (507)
                      |++++|...++++.+                                    +.|.++..+..........+..    ..+
T Consensus        86 g~~~~A~~~~~~al~------------------------------------l~p~~~~~~~~~~~~~~~~~~~----~~~  125 (281)
T 2c2l_A           86 ESYDEAIANLQRAYS------------------------------------LAKEQRLNFGDDIPSALRIAKK----KRW  125 (281)
T ss_dssp             TCHHHHHHHHHHHHH------------------------------------HHHHTTCCCCSHHHHHHHHHHH----HHH
T ss_pred             CCHHHHHHHHHHHHH------------------------------------hCccchhhHHHHHHHHHHHHHH----HHH
Confidence            777777766665432                                    0010000000000000000000    000


Q ss_pred             HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhh-CCHHHHHHHHHh
Q psy12000        262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCAL-GQYKEAEEMFLL  340 (507)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~  340 (507)
                      ....     ....+.++   .....++..  ..|++++|++.++.+....|++......++..+... +.+++|.+.|.+
T Consensus       126 ~~~~-----~~~~~~~~---~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~  195 (281)
T 2c2l_A          126 NSIE-----ERRIHQES---ELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQ  195 (281)
T ss_dssp             HHHH-----HTCCCCCC---HHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHhhhH---HHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000     00111111   111123343  379999999999999988888766666677666665 789999999998


Q ss_pred             hcc
Q psy12000        341 VQN  343 (507)
Q Consensus       341 ~~~  343 (507)
                      +.+
T Consensus       196 a~~  198 (281)
T 2c2l_A          196 VDE  198 (281)
T ss_dssp             SSC
T ss_pred             hhc
Confidence            864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=1.6e-13  Score=114.33  Aligned_cols=114  Identities=11%  Similarity=-0.044  Sum_probs=90.8

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+..|..++..|+|++|+..|+++++.+|++++.                      .+....+.              
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~--------------   55 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGF--------------   55 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHH--------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccc--------------
Confidence            445668999999999999999999999999886543                      01000000              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------CCchhHHH----HHHHHHHHhcCCHHHHHH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-------HKDLLALN----VYGAMCYYKLDYYDVSQE  155 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~  155 (507)
                                  ....+.++|.++...|+|++|+..|+++|..       +|++..++    +++|.++..+|++++|+.
T Consensus        56 ------------~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           56 ------------DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence                        0112667888888888888888888888888       99999999    999999999999999999


Q ss_pred             HHHHHHhcCCCcH
Q psy12000        156 QVAMYLAQKPTSR  168 (507)
Q Consensus       156 ~~~~~l~~~p~~~  168 (507)
                      .|++++.++|++.
T Consensus       124 ~y~kAlel~p~d~  136 (159)
T 2hr2_A          124 EFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCcH
Confidence            9999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=3.1e-13  Score=117.38  Aligned_cols=135  Identities=9%  Similarity=-0.014  Sum_probs=110.2

Q ss_pred             HHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHH
Q psy12000        291 FFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF  370 (507)
Q Consensus       291 ~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  370 (507)
                      +...|++++|+..++++....|++..+++.+|.+|...|++++|+.+|++++...+.+...+                  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------------   81 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY------------------   81 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHH------------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------------------
Confidence            56789999999999999999999988999999999999999999999999876544332111                  


Q ss_pred             HHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHH-HHhHhhH--HHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHH
Q psy12000        371 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASI-HFLRCHY--QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQ  447 (507)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-~~~~~~~--~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~  447 (507)
                                                ..++.+ ++..|++  ++|+..|++++..+|+++.+++.+|.+|..+|++++|+
T Consensus        82 --------------------------~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  135 (177)
T 2e2e_A           82 --------------------------AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI  135 (177)
T ss_dssp             --------------------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --------------------------HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH
Confidence                                      223345 4566888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhhHHHh
Q psy12000        448 EQVAMYLAQKPTSRIALNLKAC  469 (507)
Q Consensus       448 ~~~~~~l~~~P~~~~a~~~~~~  469 (507)
                      ..++++++.+|+++....+...
T Consensus       136 ~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          136 ELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHhhCCCCccHHHHHHH
Confidence            9999999999999876554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=6.7e-12  Score=112.49  Aligned_cols=166  Identities=10%  Similarity=0.014  Sum_probs=107.0

Q ss_pred             cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12000         99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD----YYDVSQEQVAMYLAQKPTSRIALNLK  174 (507)
Q Consensus        99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~a~~~~  174 (507)
                      ++..++.+|.+|...+++++|+.+|++++..  +++.+++++|.+|.. +    ++++|+++|+++.+  +.        
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g--------   83 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG--------   83 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT--------
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC--------
Confidence            3444556666666666666666666665543  345556666666655 4    56666665555532  12        


Q ss_pred             hhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12000        175 ACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNLEPSVPQEYILKAVVQVT  250 (507)
Q Consensus       175 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  250 (507)
                                                     .+.+.++||.+|..    .+++++|+..+++.....+..          
T Consensus        84 -------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----------  122 (212)
T 3rjv_A           84 -------------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD----------  122 (212)
T ss_dssp             -------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH----------
T ss_pred             -------------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc----------
Confidence                                           33456677777766    667777777776543322210          


Q ss_pred             hhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000        251 IGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC  326 (507)
Q Consensus       251 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~  326 (507)
                                                  +...+...||.+|..    .+++++|+.+|+++... |.++.+.+++|.+|.
T Consensus       123 ----------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          123 ----------------------------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             ----------------------------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence                                        001234467888888    88999999999999877 555668899999998


Q ss_pred             hh-C-----CHHHHHHHHHhhcccCCC
Q psy12000        327 AL-G-----QYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       327 ~~-g-----~~~~A~~~~~~~~~~~~~  347 (507)
                      .. |     ++++|+.+|+++.+..+.
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            64 3     899999999998765543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.44  E-value=1e-12  Score=112.33  Aligned_cols=129  Identities=11%  Similarity=-0.026  Sum_probs=104.5

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+.               
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------------   79 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---------------   79 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------
Confidence            45668999999999999999999999999999999999999999999999999988876432111               


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM--CYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~~l~  162 (507)
                                 .+..++.+|.++...|++++|+.+|++++..+|++..++..++.  .+...|++++|++.+.+...
T Consensus        80 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           80 -----------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence                       12236678889999999999999999999999988877755444  47888999999988887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.42  E-value=1.1e-12  Score=107.31  Aligned_cols=106  Identities=17%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCCh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDE   86 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~   86 (507)
                      +...+|.+++..|+|++|+..|+++++.+|+++.+|.++|.+++.+|++++|+..++++....+... ....+       
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-------   82 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI-------   82 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-------
Confidence            3446899999999999999999999999999999999999999999999999999998754222110 01011       


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL  133 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  133 (507)
                                   ...+..+|.++...|++++|++.|++++...|+.
T Consensus        83 -------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           83 -------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence                         1125678999999999999999999999888863

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.42  E-value=4.8e-13  Score=123.05  Aligned_cols=211  Identities=13%  Similarity=0.022  Sum_probs=162.4

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhhccHHHHHHHHHhCCCCcccc-chHHHHHHh
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNI-------ASCYFYLGMYLQANQILEKVPPSRAKT-RLSFHLSHK   82 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~   82 (507)
                      ..|..+ .-+++..|.+.|.++++.+|..+++|..+       +.++...++..+++-.+.+.....+.. ...+.+.-.
T Consensus        12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~   90 (282)
T 4f3v_A           12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL   90 (282)
T ss_dssp             HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred             HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence            345555 68999999999999999999999999999       899999999999999888876633322 111110000


Q ss_pred             cCChhHHHHHHHHHhhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      +++..       .-...+ ...+.+|.++...|+|++|.+.|..++...|+.. +.+.+|.++++.|+|++|+..|+...
T Consensus        91 y~~~~-------~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A           91 YGDIT-------YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             TCCCE-------EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             ccccc-------cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence            00000       000011 1266789999999999999999999999999998 99999999999999999999999776


Q ss_pred             hcC-CCc-HHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCC-hhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        162 AQK-PTS-RIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDV-IPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       162 ~~~-p~~-~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      ... |.. ..+...+|.++..+|++++|+..+++...   ....|. .+++.+++|.++.++|+.++|...++++
T Consensus       163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            543 221 23677889999999999999999998742   122133 6789999999999999999999999876

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.41  E-value=2.8e-12  Score=120.41  Aligned_cols=101  Identities=18%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .....+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++....+.+             
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------   71 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-------------   71 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------
Confidence            4455677777777777777777777777777777777777777766666666666666554432221             


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL  133 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  133 (507)
                                   +..++.+|.++...|++++|+..|++++..+|++
T Consensus        72 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           72 -------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence                         1113455555666666666666666666555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.41  E-value=3.2e-12  Score=114.65  Aligned_cols=171  Identities=11%  Similarity=0.012  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHH
Q psy12000         24 QALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ  103 (507)
Q Consensus        24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (507)
                      +|+++|+++.+.  .++++++.+|.++...+++++|+.+|+++.+..                            ++..+
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----------------------------~~~a~   53 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----------------------------DGDAL   53 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------------CHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------------------------CHHHH
Confidence            355566666543  455566666666666666666666666553210                            11124


Q ss_pred             HHHHHHHHHhh----cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q psy12000        104 LCLASIHFLRC----HYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPT--SRIALNL  173 (507)
Q Consensus       104 ~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~--~~~a~~~  173 (507)
                      +.+|.+|.. +    ++++|+.+|++++  .+.++.+++++|.+|..    .+++++|+++|++++...|.  ++.+.+.
T Consensus        54 ~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~  130 (212)
T 3rjv_A           54 ALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML  130 (212)
T ss_dssp             HHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence            455555555 4    5666666666653  23455556666666655    55666666666666655552  3555555


Q ss_pred             Hhhhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhh-c-----cHHHHHHHHHhc
Q psy12000        174 KACNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQ-E-----EHQEAFDLIKNL  233 (507)
Q Consensus       174 ~a~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~l~~~  233 (507)
                      ++.++..    .+++++|...+++..+     . +..+.+.++||.+|..- |     ++++|+..+++.
T Consensus       131 Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          131 LGLIYASGVHGPEDDVKASEYFKGSSS-----L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHTSSSSCCHHHHHHHHHHHHH-----T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHH-----c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            5555554    4455666665555432     1 22334566666666542 2     677777766653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.41  E-value=1.6e-11  Score=114.33  Aligned_cols=250  Identities=14%  Similarity=0.108  Sum_probs=158.2

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE-DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ..+.--+.+|..|+|..++...+   +..|.+. ...+++.++++.+|++...       ....+...++-.++.-. ..
T Consensus        15 ~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~~~~a~~~la~~~-~~   83 (310)
T 3mv2_B           15 MDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSKLGKVLDLYVQFL-DT   83 (310)
T ss_dssp             CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSSTTHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CCCCHHHHHHHHHHHHh-cc
Confidence            34445667888999999998544   3444443 4667889999999998742       11111111111122111 22


Q ss_pred             hHHHHHHHHHhh---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000         87 KSLMEYHQKLED---SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK--DLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus        87 ~~~~~~~~~l~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      +++....+.+..   .+..++.+|.++...|++++|+..+.+.+..+|  ++.+++..++.++.++|+.+.|.+.++++.
T Consensus        84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            222233333322   233367888888888888888888888888886  788888888888888888888888888888


Q ss_pred             hcCCC-----cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc--cHHHHHHHHHhcC
Q psy12000        162 AQKPT-----SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE--EHQEAFDLIKNLE  234 (507)
Q Consensus       162 ~~~p~-----~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~l~~~~  234 (507)
                      +.+|+     +....+                                      +.-+.+.+.+|  ++++|+..|+++.
T Consensus       164 ~~~~d~~~~~d~~l~~--------------------------------------Laea~v~l~~g~~~~q~A~~~f~El~  205 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILN--------------------------------------LAESYIKFATNKETATSNFYYYEELS  205 (310)
T ss_dssp             HHSCHHHHHHHHHHHH--------------------------------------HHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred             hcCccccccchHHHHH--------------------------------------HHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            88873     221111                                      11112233334  6677766666553


Q ss_pred             CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhh----
Q psy12000        235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSY----  310 (507)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~----  310 (507)
                      ...|...                                        .....++ ++..+|++++|...++.+.+.    
T Consensus       206 ~~~p~~~----------------------------------------~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~  244 (310)
T 3mv2_B          206 QTFPTWK----------------------------------------TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSV  244 (310)
T ss_dssp             TTSCSHH----------------------------------------HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred             HhCCCcc----------------------------------------cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3332100                                        0001123 788889999999888876655    


Q ss_pred             ------cCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCch
Q psy12000        311 ------YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKND  349 (507)
Q Consensus       311 ------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~  349 (507)
                            +|+++.++.|++.+...+|+  +|.+++.++....|.+.
T Consensus       245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence                  47778888788888888887  88888888876665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=1.2e-12  Score=106.92  Aligned_cols=99  Identities=10%  Similarity=0.063  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +..+|.+++.+|+|++|+..|+++++.+|+++.++.++|.||..+|++++|++.+++++..+|++...+...        
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------   82 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI--------   82 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH--------
Confidence            568999999999999999999999999999999999999999999999999999999999888765432211        


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                                              ..++.++|.++..+|++++|+..+.+.
T Consensus        83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                    245778899999999999999988764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.7e-12  Score=105.76  Aligned_cols=60  Identities=15%  Similarity=0.030  Sum_probs=41.5

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      .....+|.+++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            345557777888888888888888888777777777766666666666666665555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=1.3e-11  Score=110.34  Aligned_cols=140  Identities=16%  Similarity=0.082  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHH
Q psy12000         42 TEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAID  121 (507)
Q Consensus        42 ~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~  121 (507)
                      .++.+|.+++..|++++|+..++++.+..                             +..++.+|.++...|++++|+.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~lg~~~~~~g~~~~A~~   58 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPH-----------------------------SRICFNIGCMYTILKNMTEAEK   58 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCC-----------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCC-----------------------------hHHHHHHHHHHHHcCCHHHHHH
Confidence            46789999999999999999999985321                             1226789999999999999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCC
Q psy12000        122 IYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPP  201 (507)
Q Consensus       122 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~  201 (507)
                      .|++++..+|+++.+++++|.++..+|++++|++.|++++...|++....      +...                 ...
T Consensus        59 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~-----------------~~~  115 (213)
T 1hh8_A           59 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID------YKIL-----------------GLQ  115 (213)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE------CGGG-----------------TBC
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH------HHHh-----------------ccc
Confidence            99999999999999999999999999999999999999999988876210      0000                 012


Q ss_pred             CCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        202 LIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      ..+..+.++.++|.+|...|++++|+..+.+.
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            23344566777777777777777777777654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.40  E-value=1.2e-11  Score=116.81  Aligned_cols=175  Identities=11%  Similarity=0.014  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA------LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +...+..+...|+|++|+..|++++...|..+.      .+..+|.++...|++++|+..+++++...+......     
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-----  152 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-----  152 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence            345678889999999999999999998775443      334589999999999999999999998655432100     


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                                                  ....++.++|.+|..+|++++|+..+.+..                      
T Consensus       153 ----------------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al----------------------  182 (293)
T 3u3w_A          153 ----------------------------QNLYIENAIANIYAENGYLKKGIDLFEQIL----------------------  182 (293)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred             ----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence                                        012357789999999999999998886531                      


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC------chHHHHHHHHHHhhCC
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD------DSFNFNFAQAKCALGQ  330 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~  330 (507)
                               +.++....  ..+....++..+|.+|..+|+|++|+.+++++....+..      ..+++++|.+|..+|+
T Consensus       183 ---------~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          183 ---------KQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             ---------HHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence                     11111100  011112234578999999999999999999887655322      4577889999999995


Q ss_pred             -HHHHHHHHHhhcc
Q psy12000        331 -YKEAEEMFLLVQN  343 (507)
Q Consensus       331 -~~~A~~~~~~~~~  343 (507)
                       +++|+.+|++++.
T Consensus       252 ~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          252 EEAEIEDAYKKASF  265 (293)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence             7999999999863

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.40  E-value=2.6e-09  Score=111.44  Aligned_cols=406  Identities=9%  Similarity=-0.081  Sum_probs=240.1

Q ss_pred             hhHHHHHHHHHhhcH---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC---HHHHHHHHHH
Q psy12000         86 EKSLMEYHQKLEDSL---EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY---YDVSQEQVAM  159 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~  159 (507)
                      .+.+..+...+..+|   ..+..++......+.++.+..+|++++...|.....+..-+..-.+.|+   ++.+..+|++
T Consensus        49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            345556666666554   4477888888889999999999999999999999999988888888999   9999999999


Q ss_pred             HHhcCC--CcHHHHHHHhhhhhhccCh----HHHH----HhhHHHHHhhCCCCCCChhHhHHHHHHHHH---------hh
Q psy12000        160 YLAQKP--TSRIALNLKACNTYKLFTS----RAAE----NQLKPILVSILPPLIDVIPESRLNLVIYHL---------KQ  220 (507)
Q Consensus       160 ~l~~~p--~~~~a~~~~a~~~~~~~~~----~~A~----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~  220 (507)
                      ++...|  .++..+..........++.    +.+.    ..|+.++. .+..-.+.....|...+....         .+
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~-~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD-KCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH-HTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            999883  3444333322211222222    2333    45554432 111102333456655554432         34


Q ss_pred             ccHHHHHHHHHhcC--CCChHHHHHHHHHHHHh--hhc------cCcHHHHHHHHHHHHH-------hCCC-ccc-----
Q psy12000        221 EEHQEAFDLIKNLE--PSVPQEYILKAVVQVTI--GQD------TGSREMVKAAQALFQL-------VGSS-QSE-----  277 (507)
Q Consensus       221 ~~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~--g~~------~~~~~~~~~A~~~~~~-------~~~~-~~~-----  277 (507)
                      ++.+.+..++.+..  |......+......+..  +..      ......|..|...+..       +... +..     
T Consensus       208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~  287 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT  287 (679)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred             hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence            56777878887653  32222211111111110  000      0111234444444432       1100 000     


Q ss_pred             ----c-----cchhhhhHHHHHHHhhcC---------HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHH-HHH
Q psy12000        278 ----C-----DTVPGRQCMASSFFLLRS---------FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAE-EMF  338 (507)
Q Consensus       278 ----~-----~~~~~~~~la~~~~~~~~---------~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~  338 (507)
                          |     +......+...+-+...+         .+.....|++++...|..+.+++..+..+...|+.++|. ..|
T Consensus       288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il  367 (679)
T 4e6h_A          288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL  367 (679)
T ss_dssp             TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                0     001112344444444433         233456889999899999999999999999999999997 999


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcH-HHHHHH-----------HHhhh-cHHHHHHHHHHHHh
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEK-SLMEYH-----------QKLED-SLEEQLCLASIHFL  405 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------~~l~~-~~~~~~~l~~~~~~  405 (507)
                      ++++...|.+...++.+ +......++.+.|..++.+....- .....+           ..+.. ....++.+......
T Consensus       368 ~rAi~~~P~s~~Lwl~~-a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR  446 (679)
T 4e6h_A          368 KLGQQCIPNSAVLAFSL-SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR  446 (679)
T ss_dssp             HHHHHHCTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence            99986555554444332 334445566666666655432210 000000           00000 00112222233333


Q ss_pred             HhhHHHHHHHHHHHhhc-CCchhhhHHHHHhhcccccc-chhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000        406 RCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ  483 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~-~p~~~~~~~~la~~y~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~  483 (507)
                      .|..+.|.++|.++++. .+....++...|...++.|+ .+.|..+|+.+++..|+++..+...+.....+++...|++.
T Consensus       447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l  526 (679)
T 4e6h_A          447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL  526 (679)
T ss_dssp             HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            47788999999999887 44445566666666666654 89999999999999999998876666655566778888888


Q ss_pred             HHHHHHhCCC
Q psy12000        484 LKPILVSAGP  493 (507)
Q Consensus       484 ~~~~~~~~~~  493 (507)
                      |...+...|+
T Consensus       527 feral~~~~~  536 (679)
T 4e6h_A          527 FESSIDKISD  536 (679)
T ss_dssp             HHHHTTTSSS
T ss_pred             HHHHHHhcCC
Confidence            8888888774

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.3e-12  Score=106.42  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHH
Q psy12000         39 PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQE  118 (507)
Q Consensus        39 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~  118 (507)
                      .++.+..+|.+++..|++++|+..++++....+.                          .+..+..+|.++...|++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~   56 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--------------------------DARGYSNRAAALAKLMSFPE   56 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHhcCHHH
Confidence            3455666666666666666666666554321111                          11224556666666666666


Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000        119 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       119 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      |+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+
T Consensus        57 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           57 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            6666666666666666666666666666666666666666666666

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=1.9e-12  Score=106.04  Aligned_cols=117  Identities=19%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ....+.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++....+.             
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------   82 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------------   82 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------
Confidence            3445557777777777777777777777777777777777777777777777777766655321111             


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  148 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  148 (507)
                                   .+..++.+|.++...|++++|+.+|++++..+|++..++..++.++..+|
T Consensus        83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence                         11224556666777777777777777777777776666666776666655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.39  E-value=1e-11  Score=105.94  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+..+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            37889999999999999999999999999999999999999999999999999999999999999999888889998999


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhH--HHHHHHHHhhccHHHHHHHHHh
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESR--LNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      |++++|...+++++.     ..|..+.++  +.++..+...|++++|+..+.+
T Consensus        95 ~~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           95 GKFRAALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             TCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            999999988887653     233344555  3444457778888888877653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.39  E-value=8.2e-12  Score=117.96  Aligned_cols=135  Identities=16%  Similarity=0.044  Sum_probs=106.5

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      ...+..++..|+|++|++.++++++..|...      ..++.+|.++...|++++|+..++++........         
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------  149 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---------  149 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS---------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC---------
Confidence            3467889999999999999999999888755      2356789999999999999999988753211110         


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCCch----hHHHHHHHHHHHhcCCHHHHHHH
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRIL---LDHKDL----LALNVYGAMCYYKLDYYDVSQEQ  156 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~  156 (507)
                       +...          ....+..+|.+|..+|++++|+.+|++++   ...|+.    ..+++++|.+|..+|++++|+++
T Consensus       150 -~~~~----------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~  218 (293)
T 2qfc_A          150 -DVYQ----------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             -CTTH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -chHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence             0000          01126689999999999999999999999   455653    26899999999999999999999


Q ss_pred             HHHHHhcC
Q psy12000        157 VAMYLAQK  164 (507)
Q Consensus       157 ~~~~l~~~  164 (507)
                      +++++...
T Consensus       219 ~~kal~~~  226 (293)
T 2qfc_A          219 VNKAIEIS  226 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.38  E-value=1.4e-11  Score=116.28  Aligned_cols=174  Identities=11%  Similarity=0.031  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +...+..+...|+|++|++.+++++...|...      ..++.+|.++...|++++|+..+++++...+.....      
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------  151 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------  151 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch------
Confidence            56788999999999999999999999877533      346678999999999999999999998765543210      


Q ss_pred             hhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccC
Q psy12000        177 NTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                                                 .....++.++|.+|..+|++++|+..+.+.                       
T Consensus       152 ---------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~ka-----------------------  181 (293)
T 2qfc_A          152 ---------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQI-----------------------  181 (293)
T ss_dssp             ---------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------
Confidence                                       001246788999999999999999888653                       


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCC--C----chHHHHHHHHHHhhCC
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTS--D----DSFNFNFAQAKCALGQ  330 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~----~~~~~~lg~~~~~~g~  330 (507)
                              +..++...... . ....++..+|.+|..+|+|++|+.+++++....++  +    ..+++++|.+|..+|+
T Consensus       182 --------l~~~~~~~~~~-~-~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          182 --------LKQLEALHDNE-E-FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             --------HHHHHHSCCCH-H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHhcCccc-c-chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence                    11111111000 0 00123457899999999999999999988765432  1    3567889999999999


Q ss_pred             HHHH-HHHHHhhc
Q psy12000        331 YKEA-EEMFLLVQ  342 (507)
Q Consensus       331 ~~~A-~~~~~~~~  342 (507)
                      +++| ..+|++++
T Consensus       252 ~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          252 EEAEIEDAYKKAS  264 (293)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999 77788875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.38  E-value=2.9e-12  Score=104.29  Aligned_cols=117  Identities=18%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++....+.               
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------   78 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---------------   78 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---------------
Confidence            44456777777777777777777777777777777777777776666666666666554321110               


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCH
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYY  150 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  150 (507)
                                 .+..++.+|.++...|++++|+..|++++..+|++..++..+|.++..+|++
T Consensus        79 -----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 -----------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             -----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence                       1112445666666666666666666666666666666666666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.37  E-value=4.2e-12  Score=108.73  Aligned_cols=112  Identities=8%  Similarity=-0.049  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHH
Q psy12000        315 DSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE  394 (507)
Q Consensus       315 ~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  394 (507)
                      ...++.+|.+++..|++++|+..|++++..++.+...+                                          
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------------------------------   48 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------------------------------------------   48 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------------------------------------------
Confidence            35567788888888888888888888775554322111                                          


Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        395 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       395 ~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                        ..++.+++..|++++|+..|++++..+|+++.+++.+|.+|.++|++++|+..|+++++++|+++.++..++..
T Consensus        49 --~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           49 --SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             --HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             --HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence              22345666678888888888888888899999999999999999999999999999999999999876655554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.37  E-value=2.2e-10  Score=108.33  Aligned_cols=251  Identities=8%  Similarity=0.018  Sum_probs=158.6

Q ss_pred             hhcCHH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc----------HHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000         18 HLGQYK-QALGIYETLRHLPNPPEDTEFNIASCYFYLGM----------YLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus        18 ~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ..|+++ +|+..+.+++..+|++..+|++.+.++..+|.          +++++.++..+....+               
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P---------------  105 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---------------  105 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC---------------
Confidence            456666 79999999999999999999999999988776          3344444333321111               


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRC--HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQ  163 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~  163 (507)
                                 ++...+...+.++...|  .+++++.++.+++..+|.+..++.+.+.+....|. ++++++.+.+++..
T Consensus       106 -----------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~  174 (331)
T 3dss_A          106 -----------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  174 (331)
T ss_dssp             -----------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence                       12233555666666666  37778888888888888777777777777777777 47777777777777


Q ss_pred             CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHH
Q psy12000        164 KPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQE  240 (507)
Q Consensus       164 ~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~  240 (507)
                      +|.+..|++.++.+....+....+                  .+..       -...+.++++++.+.+   ..|.+...
T Consensus       175 ~p~N~SAW~~R~~ll~~l~~~~~~------------------~~~~-------~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          175 NFSNYSSWHYRSCLLPQLHPQPDS------------------GPQG-------RLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             CSCCHHHHHHHHHHHHHHSCCC-------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhhcccc------------------cccc-------ccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence            887777776665554433211000                  0000       0012557777777764   36777776


Q ss_pred             HH-HHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH
Q psy12000        241 YI-LKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF  319 (507)
Q Consensus       241 ~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~  319 (507)
                      +. .++.+....|...                               +.  -...+.+++++++++.+.+..|++...+.
T Consensus       230 W~Y~r~ll~~~~~~~~-------------------------------~~--~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          230 WFYHRWLLGAGSGRCE-------------------------------LS--VEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             HHHHHHHHHSSSCGGG-------------------------------CC--HHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhccCccc-------------------------------cc--hHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence            64 3333221111000                               00  11245688999999999999998854333


Q ss_pred             HHHHHH---HhhCCHHHHHHHHHhhcccCCCchhhh
Q psy12000        320 NFAQAK---CALGQYKEAEEMFLLVQNEGLKNDYVY  352 (507)
Q Consensus       320 ~lg~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~  352 (507)
                      .++.+.   ...|..+++..++.++++.+|.....|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y  312 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  312 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence            232221   235788999999999988887555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.36  E-value=6.1e-12  Score=118.84  Aligned_cols=134  Identities=15%  Similarity=0.044  Sum_probs=104.4

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhh------HHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDT------EFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+..++..|+|++|+..++++++..|..++.      +..+|.++...|++++|+..++++........          +
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~----------~  150 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----------D  150 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----------C
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----------c
Confidence            4778899999999999999999988877652      33589999999999999999998753111110          0


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-------HKDLLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                      ...          ....+..+|.+|...|++++|+.+|++++..       .|....+++++|.+|..+|++++|+++++
T Consensus       151 ~~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~  220 (293)
T 3u3w_A          151 VYQ----------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN  220 (293)
T ss_dssp             TTH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            000          0012568999999999999999999999953       23445689999999999999999999999


Q ss_pred             HHHhcCC
Q psy12000        159 MYLAQKP  165 (507)
Q Consensus       159 ~~l~~~p  165 (507)
                      +++...+
T Consensus       221 ~al~~~~  227 (293)
T 3u3w_A          221 KAIEISC  227 (293)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9986543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.36  E-value=4e-12  Score=104.06  Aligned_cols=118  Identities=12%  Similarity=-0.049  Sum_probs=80.8

Q ss_pred             CCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcH
Q psy12000         37 NPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHY  116 (507)
Q Consensus        37 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~  116 (507)
                      |.+...++.+|.+++..|++++|+..++++....+..                          +..+..+|.++...|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------~~~~~~la~~~~~~~~~   66 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--------------------------AKLYSNRAACYTKLLEF   66 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--------------------------HHHHHHHHHHHTTTTCH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------HHHHHHHHHHHHHhccH
Confidence            4455677777777777777777777777664332211                          11245677777777777


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        117 QEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       117 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      ++|+.+|++++..+|++..+++.+|.++..+|++++|+..+++++..+|++..++..++.++..
T Consensus        67 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777766655555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.36  E-value=1.4e-11  Score=100.53  Aligned_cols=70  Identities=13%  Similarity=0.033  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL---LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      ++.+|.++...|++++|+..|++++..+|++   +.+++.+|.++..+|++++|+..|++++..+|+++.+..
T Consensus        42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            4456677777777888888888888888887   777888888888888888888888888888888876544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.36  E-value=3.1e-12  Score=106.38  Aligned_cols=106  Identities=13%  Similarity=0.053  Sum_probs=94.7

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      .-+.+.|++|++.|+++++.+|+++++|+++|.++..+++++.+....                                
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------------   59 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------------   59 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------------
Confidence            346688999999999999999999999999999999999887665421                                


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcC
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-----------YYDVSQEQVAMYLAQK  164 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~  164 (507)
                                        +.+++|+..|+++|+++|++.++++++|.+|..+|           ++++|++.|++++.++
T Consensus        60 ------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           60 ------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence                              34899999999999999999999999999999885           8999999999999999


Q ss_pred             CCcHHHH
Q psy12000        165 PTSRIAL  171 (507)
Q Consensus       165 p~~~~a~  171 (507)
                      |++....
T Consensus       122 P~~~~y~  128 (158)
T 1zu2_A          122 PDNTHYL  128 (158)
T ss_dssp             TTCHHHH
T ss_pred             CCCHHHH
Confidence            9998643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.35  E-value=4.9e-12  Score=112.01  Aligned_cols=163  Identities=15%  Similarity=0.017  Sum_probs=103.4

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc---hHHHHHHhcCChhHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR---LSFHLSHKLGDEKSL   89 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~   89 (507)
                      +.+.-..|++++|.+.++......+.....+..+|.+++..|++++|+..++++....+...   .. ......   ..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~---~~~   86 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKK---KNI   86 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHH---HHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHH---HHH
Confidence            34444556666666666555554555556666666666666666666666665532111000   00 000000   000


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                               ....+..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|++..
T Consensus        87 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  157 (198)
T 2fbn_A           87 ---------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  157 (198)
T ss_dssp             ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             ---------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence                     01125678889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhhhhccChHHHH
Q psy12000        170 ALNLKACNTYKLFTSRAAE  188 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~  188 (507)
                      +...++.+....++.+++.
T Consensus       158 ~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          158 IRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888877777666555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.34  E-value=7.1e-11  Score=112.23  Aligned_cols=142  Identities=9%  Similarity=-0.081  Sum_probs=118.9

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhc-cHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLG-MYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      ....+..++|++.+++++..+|++..+|++.+.++..+| .+++++..+.++....+++                     
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------------  122 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------------  122 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------------
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------------
Confidence            344556678999999999999999999999999999999 5999999988775443332                     


Q ss_pred             HHhhcHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcC
Q psy12000         95 KLEDSLEEQLCLASIHFLR-C-HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYD--------VSQEQVAMYLAQK  164 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~  164 (507)
                           ...+...+.++... + +++++++++.+++..+|.+..++.+.+.+...+|.++        ++++.++++++.+
T Consensus       123 -----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          123 -----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             -----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence                 12244556666666 6 8899999999999999999999999999999999988        9999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccC
Q psy12000        165 PTSRIALNLKACNTYKLFT  183 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~  183 (507)
                      |.+..|++.++.+....+.
T Consensus       198 p~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          198 GRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             TTCHHHHHHHHHHHTTSTT
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999888877666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.34  E-value=1.3e-11  Score=105.67  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .++.+|.+++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..|++++..+|++..++..+|.+++..
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            37789999999999999999999999999999999999999999999999999999999999999988877777777777


Q ss_pred             cChHHHHHhhHHHH
Q psy12000        182 FTSRAAENQLKPIL  195 (507)
Q Consensus       182 ~~~~~A~~~l~~~~  195 (507)
                      |++++|...+++++
T Consensus        93 g~~~~A~~~~~~al  106 (164)
T 3sz7_A           93 ADYKGAKEAYEKGI  106 (164)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            77777777666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.33  E-value=1.2e-08  Score=106.47  Aligned_cols=67  Identities=12%  Similarity=-0.005  Sum_probs=54.0

Q ss_pred             CccchhhHHHHHH--HhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc---HHHHHHHHHhCCCCc
Q psy12000          4 ADSLTDAWLGYCH--FHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM---YLQANQILEKVPPSR   70 (507)
Q Consensus         4 ~~~~~~~~lg~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~~~~~~   70 (507)
                      +|-+...|+..+-  ...++++.|...|++++...|.....|...+..-...|+   ++.+..+|+++....
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~  133 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE  133 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence            4556667754443  456899999999999999999999999999999999999   999999999987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=2.8e-12  Score=113.54  Aligned_cols=120  Identities=18%  Similarity=0.042  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      +..+|..++..|+|++|+..|++++...|+++                .+++++|.++..+|++++|+..+++++..+|+
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  120 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN  120 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            67899999999999999999999999998876                89999999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAF  227 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  227 (507)
                      +..++..+|.+++..|++++|...+++++.     ..|..+.++..++.++...++++++.
T Consensus       121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          121 NVKALYKLGVANMYFGFLEEAKENLYKAAS-----LNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888888888888888877653     23445667777777777766666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.32  E-value=2.7e-11  Score=98.49  Aligned_cols=117  Identities=17%  Similarity=0.075  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence            37789999999999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEH  223 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  223 (507)
                      |++++|...++++.+     ..|..+.++..++.++...|++
T Consensus        94 ~~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           94 NKHVEAVAYYKKALE-----LDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHHhcC
Confidence            888888887777643     2344456667777777666653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.31  E-value=9.5e-13  Score=132.54  Aligned_cols=159  Identities=16%  Similarity=0.070  Sum_probs=121.5

Q ss_pred             hhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh
Q psy12000         18 HLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE   97 (507)
Q Consensus        18 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (507)
                      .++++++|+..|+.+++..|.....+..+|.+++..|+|++|+..|+++....+....       . ....    ...+.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~-~~~~----~~~~~  313 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------L-SEKE----SKASE  313 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------C-CHHH----HHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------C-ChHH----HHHHH
Confidence            4567778888888888888888899999999999999999999999987542221100       0 0000    00111


Q ss_pred             h-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000         98 D-SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus        98 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      . ....++++|.++..+|+|++|+..|++++..+|++..+++++|.+|..+|++++|+..|+++++.+|++..++..++.
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  393 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            1 123378999999999999999999999999999999999999999999999999999999999999999877776666


Q ss_pred             hhhhccChHHHH
Q psy12000        177 NTYKLFTSRAAE  188 (507)
Q Consensus       177 ~~~~~~~~~~A~  188 (507)
                      ++..+++++++.
T Consensus       394 ~~~~~~~~~~a~  405 (457)
T 1kt0_A          394 CQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=6.2e-12  Score=101.72  Aligned_cols=100  Identities=9%  Similarity=-0.061  Sum_probs=88.4

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      ..+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++..+++
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCcc
Q psy12000        477 SRAAENQLKPILVSAGPRVR  496 (507)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~  496 (507)
                      .+.|...|++.++..|.+..
T Consensus       101 ~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999998743

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=1.1e-12  Score=132.66  Aligned_cols=126  Identities=12%  Similarity=0.016  Sum_probs=107.9

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .....+|.+++..|+|++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++....+..             
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------------   73 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------------   73 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------
Confidence            3455689999999999999999999999999999999999999999999999999998875433221             


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC--YYKLDYYDVSQEQVA  158 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~  158 (507)
                                   +..++.+|.+|..+|++++|++.|+++++.+|++..++..++.+  +...|++++|++.++
T Consensus        74 -------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           74 -------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                         22367899999999999999999999999999999999999998  889999999999998

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.30  E-value=7.9e-12  Score=104.15  Aligned_cols=103  Identities=17%  Similarity=0.033  Sum_probs=94.2

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCc-------hhh-----hHHHHHhhccccccchhHHHHHHHHHhc-------C
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKD-------LLA-----LNVYGAMCYYKLDYYDVSQEQVAMYLAQ-------K  457 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~-------~~~-----~~~~la~~y~~~g~~~~A~~~~~~~l~~-------~  457 (507)
                      ...|..++..|+|++|+..|++++..+|+       +..     +++++|.++.++|++++|+..++++|++       +
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            45677888889999999999999999998       333     8899999999999999999999999999       9


Q ss_pred             CCchhhh----hHHHhhhhhcCChHHHHHHHHHHHHhCCCCccCCC
Q psy12000        458 PTSRIAL----NLKACNTYKLFTSRAAENQLKPILVSAGPRVRFPP  499 (507)
Q Consensus       458 P~~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (507)
                      |+++.++    +.+|..+..++..+.|...|++.++..|++...-+
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            9999999    99999999999999999999999999999854443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.29  E-value=3.5e-11  Score=96.88  Aligned_cols=72  Identities=22%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      ..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+...++
T Consensus        47 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            344555555555555555555555555555555555666666666666666666666655555555444333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=4.1e-11  Score=123.28  Aligned_cols=204  Identities=9%  Similarity=-0.031  Sum_probs=134.6

Q ss_pred             Hhhc-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        112 LRCH-YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY----------YDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       112 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      ..|+ .++|++.+.+++..+|++..+|+..+.+...+|+          ++++++.+++++..+|++..+++.++.+   
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~---  116 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL---  116 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH---
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---
Confidence            3344 4678999999999999999999999999998888          7888888888888888777655433322   


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (567)
T 1dce_A          117 --------------------------------------------------------------------------------  116 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhc--CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC-CHHHHHHH
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLR--SFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG-QYKEAEEM  337 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~  337 (507)
                                                    +...+  ++++++++++++.+.+|.+..++.+++.++...| .+++++++
T Consensus       117 ------------------------------l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A          117 ------------------------------LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             ------------------------------HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ------------------------------HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence                                          22223  3455556666666666665555555666666666 56666666


Q ss_pred             HHhhcccCCCchhhh--hhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHH
Q psy12000        338 FLLVQNEGLKNDYVY--ISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDI  415 (507)
Q Consensus       338 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~  415 (507)
                      +.++++.++.+...|  .+.                +..++....++       ..    .     .....+.+++|+++
T Consensus       167 ~~~~I~~~p~n~saW~~r~~----------------ll~~l~~~~~~-------~~----~-----~~~~~~~~~eel~~  214 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSC----------------LLPQLHPQPDS-------GP----Q-----GRLPENVLLKELEL  214 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHH----------------HHHHHSCCCCS-------SS----C-----CSSCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHH----------------HHHhhcccccc-------cc----c-----ccccHHHHHHHHHH
Confidence            666655554433222  111                00000000000       00    0     00012568999999


Q ss_pred             HHHHhhcCCchhhhHHHHHhhccccccchh------------HHHHHHHHHhcCCCc
Q psy12000        416 YKRILLDHKDLLALNVYGAMCYYKLDYYDV------------SQEQVAMYLAQKPTS  460 (507)
Q Consensus       416 ~~~~l~~~p~~~~~~~~la~~y~~~g~~~~------------A~~~~~~~l~~~P~~  460 (507)
                      +++++..+|++..+++++++++.+.|++++            |+..|.++++++|+.
T Consensus       215 ~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          215 VQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             HHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             HHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence            999999999999999999999999999777            666677788888774

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.29  E-value=2.4e-11  Score=103.65  Aligned_cols=93  Identities=24%  Similarity=0.303  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh------------------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLD------------------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      +..+|..++..|+|++|+..|++++..                  +|.+..+++++|.|+..+|++++|+..+++++..+
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            678999999999999999999999999                  77788999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHH
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPIL  195 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~  195 (507)
                      |+++.++..+|.+++.+|++++|...+++++
T Consensus        94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            9999888877777777777777777776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.29  E-value=3.8e-10  Score=107.20  Aligned_cols=234  Identities=8%  Similarity=-0.068  Sum_probs=170.9

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc-c-
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL-F-  182 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~-~-  182 (507)
                      ...+....+..++|++++.++|..+|++..+++..+.+...+| .+++++..++.++..+|++..+++.++.+.... + 
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence            3345555667789999999999999999999999999999999 599999999999999999999999998888777 6 


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHH--------HHHHHHHh---cCCCChHHHHHHHHHHHHh
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQ--------EAFDLIKN---LEPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~l~~---~~~~~~~~~~~~~~~~~~~  251 (507)
                      +.+++...+.+++     ...+.+..+|...+.+....|.++        ++++.+.+   .+|.+...+..++.+...+
T Consensus       140 ~~~~EL~~~~k~L-----~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          140 DPVSEIEYIHGSL-----LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             CCHHHHHHHHHHT-----SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            7788887777653     456777889999999988888887        88887764   4788888888888888777


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCH--------------------HHHHHHHHHhhhhc
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSF--------------------KDVILYLSSIKSYY  311 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~Ai~~~~~~~~~~  311 (507)
                      +........+++++++++....  ..|+...++..+..++...|+-                    .+..+.........
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP  292 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred             cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence            7543344556677776654322  1344455666666666665543                    22222222222221


Q ss_pred             ------CCCchHHHHHHHHHHhhCCHHHHHHHHHhhc-ccCC
Q psy12000        312 ------TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ-NEGL  346 (507)
Q Consensus       312 ------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~-~~~~  346 (507)
                            +..+.++..++.+|...|+.++|.+.|+.+. +.+|
T Consensus       293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp  334 (349)
T 3q7a_A          293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ  334 (349)
T ss_dssp             CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred             cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence                  2344555668999999999999999998875 4444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.29  E-value=6.7e-12  Score=107.18  Aligned_cols=123  Identities=14%  Similarity=0.054  Sum_probs=95.4

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHH
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHL--------PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHL   79 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~   79 (507)
                      .....|..++..|+|++|+..|+++++.        +|.+++.                  ..+.      +.       
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~------------------~~~~------~~-------   61 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW------------------VELD------RK-------   61 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH------------------HHHH------HT-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH------------------HHHH------HH-------
Confidence            4456899999999999999999999886        3443321                  0000      00       


Q ss_pred             HHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000         80 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAM  159 (507)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  159 (507)
                                         .+..+.++|.++...|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|++
T Consensus        62 -------------------~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           62 -------------------NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence                               0112667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcH-HHHHHHhhhhhh
Q psy12000        160 YLAQKPTSR-IALNLKACNTYK  180 (507)
Q Consensus       160 ~l~~~p~~~-~a~~~~a~~~~~  180 (507)
                      ++..+|+++ .....++.+...
T Consensus       123 al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A          123 LLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHH
Confidence            999999998 444444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.28  E-value=2.3e-11  Score=98.34  Aligned_cols=90  Identities=8%  Similarity=-0.077  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      .+.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            67889999999999999999999999999999999999999999999999999999999999998865544444444444


Q ss_pred             ChHHHHHhhH
Q psy12000        183 TSRAAENQLK  192 (507)
Q Consensus       183 ~~~~A~~~l~  192 (507)
                      ++++|...++
T Consensus       100 ~~~~A~~~~~  109 (121)
T 1hxi_A          100 NANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4444443333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=2.8e-11  Score=97.49  Aligned_cols=116  Identities=19%  Similarity=0.229  Sum_probs=101.0

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      .+.+.+|.++...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++....+.              
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------   75 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------   75 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--------------
Confidence            456678999999999999999999999999999999999999999999999999999876421111              


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  148 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  148 (507)
                                  .+..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        76 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           76 ------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                        12235688999999999999999999999999999999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.28  E-value=1.2e-11  Score=102.04  Aligned_cols=63  Identities=11%  Similarity=0.078  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      ..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            344455555555555555555555556665556666666666666666666666666555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.28  E-value=1.3e-10  Score=102.60  Aligned_cols=164  Identities=12%  Similarity=0.041  Sum_probs=116.6

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      .+..|+|++|.+.++.+....+....++..+|.++...|++++|+..++++..          +....+....       
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~~~-------   64 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ----------QAQKSGDHTA-------   64 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------HHHTTCCHHH-------
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----------HHHHcCCcHH-------
Confidence            46789999999976666553336678999999999999999999999987632          1111111100       


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CC----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD---HK----DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                         ....+..+|.++...|++++|+..|++++..   .|    ....++.++|.++..+|++++|+..+++++...+...
T Consensus        65 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           65 ---EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence               0122678999999999999999999999988   33    3456789999999999999999999999875422111


Q ss_pred             HHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        169 IALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       169 ~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      ..                                 .....++.++|.++...|++++|...+.+
T Consensus       142 ~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          142 DQ---------------------------------VAIACAFRGLGDLAQQEKNLLEAQQHWLR  172 (203)
T ss_dssp             CH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ch---------------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            00                                 00123457788888888999888877764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.28  E-value=1.4e-11  Score=97.31  Aligned_cols=107  Identities=12%  Similarity=0.039  Sum_probs=81.9

Q ss_pred             CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Q psy12000         36 PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCH  115 (507)
Q Consensus        36 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~  115 (507)
                      +|+++.+++.+|.+++..|++++|+..++++....+.                          .+..+..+|.++...|+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------~~~~~~~~a~~~~~~~~   55 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--------------------------ESKYWLMKGKALYNLER   55 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHTTC
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------------------CHHHHHHHHHHHHHccC
Confidence            4666667777777777777777777776655321111                          01124567888888888


Q ss_pred             HHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCcH
Q psy12000        116 YQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus       116 ~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~  168 (507)
                      +++|+..|++++..+|+  +..+++.+|.++..+ |++++|++.+++++..+|.++
T Consensus        56 ~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           56 YEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            89999999999999999  899999999999999 999999999999999888753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.27  E-value=9.7e-11  Score=96.50  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                      +..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++..+|+++.++..+|.++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34478899999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             hccChHHHHHhhHHHH
Q psy12000        180 KLFTSRAAENQLKPIL  195 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~  195 (507)
                      ..|++++|...+++++
T Consensus        89 ~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           89 EMESYDEAIANLQRAY  104 (137)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            8888888888887764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.27  E-value=2.5e-11  Score=96.72  Aligned_cols=109  Identities=14%  Similarity=-0.020  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...+.+|.+++..|++++|+..|++++..+|.++.++..+|.++...                                 
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------------------------------   51 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---------------------------------   51 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------------------------------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---------------------------------
Confidence            34455667777777777777777777766666655555555555444                                 


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                                 |++++|+..|++++..+|+++.+++.+|.++...|++++|++.+++++..+|+
T Consensus        52 ---------------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           52 ---------------------------GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             ---------------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             ---------------------------ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence                                       45555555555555555555555555555665666666666666655555555


Q ss_pred             cHHHHHHHh
Q psy12000        167 SRIALNLKA  175 (507)
Q Consensus       167 ~~~a~~~~a  175 (507)
                      ++.++..++
T Consensus       105 ~~~~~~~l~  113 (118)
T 1elw_A          105 NPQLKEGLQ  113 (118)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            555444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.7e-10  Score=115.14  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=135.3

Q ss_pred             CccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChh-----------------hHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000          4 ADSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPED-----------------TEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus         4 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      +.+.+.+.-|..+...|+|++|++.|.++++..|...+                 +...+|.+|...|++++|+..+.++
T Consensus         2 s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~   81 (434)
T 4b4t_Q            2 SLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS   81 (434)
T ss_dssp             CSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34566778899999999999999999999999887543                 4678999999999999999998876


Q ss_pred             CCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHH
Q psy12000         67 PPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYG  140 (507)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~l  140 (507)
                      ......          ..+... .         ......+|.++...|++++|+.++++++...+      ....++..+
T Consensus        82 ~~~~~~----------~~~~~~-~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (434)
T 4b4t_Q           82 TEYMMQ----------FAKSKT-V---------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL  141 (434)
T ss_dssp             HHHHHT----------SCHHHH-H---------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred             HHHHHH----------ccchHH-H---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            321000          000000 0         00134566777777888888888888776543      235677778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHh--hCCCCCCChhHhHHH
Q psy12000        141 AMCYYKLDYYDVSQEQVAMYLAQ------KPTSRIALNLKACNTYKLFTSRAAENQLKPILVS--ILPPLIDVIPESRLN  212 (507)
Q Consensus       141 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~  212 (507)
                      |.+|...|+|++|+..+++++..      .|....++...+.++...|++++|...++++...  ............+..
T Consensus       142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence            88888888888888888877643      2222334555566666666666666666554320  000000011234556


Q ss_pred             HHHHHHhhccHHHHHHHHH
Q psy12000        213 LVIYHLKQEEHQEAFDLIK  231 (507)
Q Consensus       213 l~~~~~~~~~~~~A~~~l~  231 (507)
                      +|.++...|+|++|...+.
T Consensus       222 ~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          222 SGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             HHHHTTSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHH
Confidence            6777777777777766654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-10  Score=97.14  Aligned_cols=120  Identities=11%  Similarity=-0.028  Sum_probs=96.9

Q ss_pred             CCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhh
Q psy12000         35 LPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC  114 (507)
Q Consensus        35 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g  114 (507)
                      ..|.+...++.+|.+++..|++++|+..++++....+....                       .+..+..+|.++...|
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------------~~~~~~~~a~~~~~~~   79 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-----------------------QAVLHRNRAACHLKLE   79 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH-----------------------HHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH-----------------------HHHHHHHHHHHHHHHc
Confidence            34667778888888888888888888888877543332100                       0122667899999999


Q ss_pred             cHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        115 HYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       115 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      ++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|++..+...++.+
T Consensus        80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998766554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.25  E-value=2.1e-10  Score=91.23  Aligned_cols=94  Identities=16%  Similarity=0.042  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999887777777777777


Q ss_pred             cChHHHHHhhHHHH
Q psy12000        182 FTSRAAENQLKPIL  195 (507)
Q Consensus       182 ~~~~~A~~~l~~~~  195 (507)
                      |++++|...++.+.
T Consensus        86 ~~~~~A~~~~~~~~   99 (118)
T 1elw_A           86 NRFEEAKRTYEEGL   99 (118)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            77777766666543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.24  E-value=2.6e-10  Score=113.74  Aligned_cols=207  Identities=12%  Similarity=0.028  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      ..+..|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            356678888999999999999999999887532                 367899999999999999999999988765


Q ss_pred             CCcHH------HHHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000        165 PTSRI------ALNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV  237 (507)
Q Consensus       165 p~~~~------a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~  237 (507)
                      +....      ....++.++...|+++.|...++......- .........++.++|.+|...|+|++|...+.++..  
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--  163 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR--  163 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH--
Confidence            54432      234456666677888888888877643110 112233456778899999999999999988865310  


Q ss_pred             hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc---CCC
Q psy12000        238 PQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY---TSD  314 (507)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~---~~~  314 (507)
                                  ...                    .....+.....+..++.+|...|+|++|..+++++....   +++
T Consensus       164 ------------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          164 ------------EFK--------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP  211 (434)
T ss_dssp             ------------HHT--------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ------------HHH--------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence                        000                    000011112223457899999999999999999887543   222


Q ss_pred             ----chHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        315 ----DSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       315 ----~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                          ..++..+|.++...|+|++|..+|.+++
T Consensus       212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                1345667899999999999999998875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.24  E-value=1.6e-11  Score=102.02  Aligned_cols=109  Identities=13%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             HhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHH
Q psy12000        292 FLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFH  371 (507)
Q Consensus       292 ~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  371 (507)
                      .+.++|++|+..++.+...+|++..+++++|.++..+|+++.+....                                 
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al---------------------------------   59 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK---------------------------------   59 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH---------------------------------
Confidence            34567888888888888888888888888888888887665444321                                 


Q ss_pred             HHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc----------
Q psy12000        372 LSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD----------  441 (507)
Q Consensus       372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g----------  441 (507)
                                                         +.+++||..|+++++.+|+...+++++|.+|..+|          
T Consensus        60 -----------------------------------~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~  104 (158)
T 1zu2_A           60 -----------------------------------QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK  104 (158)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             -----------------------------------hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhh
Confidence                                               23788999999999999999999999999999885          


Q ss_pred             -cchhHHHHHHHHHhcCCCchhhhhHHH
Q psy12000        442 -YYDVSQEQVAMYLAQKPTSRIALNLKA  468 (507)
Q Consensus       442 -~~~~A~~~~~~~l~~~P~~~~a~~~~~  468 (507)
                       ++++|+.+|+++++++|++....+.+.
T Consensus       105 g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A          105 HNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             899999999999999999987655443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.23  E-value=5.8e-12  Score=127.34  Aligned_cols=134  Identities=12%  Similarity=0.034  Sum_probs=111.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .+|.++...|+|++|+.+++++.+..|++..+++++|.+|..+|++++|++.|++++..++.+...+             
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-------------   77 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY-------------   77 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH-------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH-------------
Confidence            4678899999999999999999999999998999999999999999999999999987665332111             


Q ss_pred             hhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhh--ccccccc
Q psy12000        366 TRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMC--YYKLDYY  443 (507)
Q Consensus       366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~--y~~~g~~  443 (507)
                                                     ..+|.++...|++++|+..|+++++.+|++..+...++.+  +.++|++
T Consensus        78 -------------------------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~  126 (477)
T 1wao_1           78 -------------------------------YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF  126 (477)
T ss_dssp             -------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                           2345577778999999999999999999999999999988  9999999


Q ss_pred             hhHHHHHH-----------HHHhcCCCchhh
Q psy12000        444 DVSQEQVA-----------MYLAQKPTSRIA  463 (507)
Q Consensus       444 ~~A~~~~~-----------~~l~~~P~~~~a  463 (507)
                      ++|++.++           +++...|+...+
T Consensus       127 ~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~  157 (477)
T 1wao_1          127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGP  157 (477)
T ss_dssp             CCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred             HHHhccccccchhHhhhhhhhcccccccccc
Confidence            99999999           888888876544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.23  E-value=6.5e-11  Score=93.38  Aligned_cols=107  Identities=12%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             cCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhh
Q psy12000        311 YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE  390 (507)
Q Consensus       311 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~  390 (507)
                      +|++..+++.+|.++...|++++|+..|++++...+.+...+                                      
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------------------------------   43 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW--------------------------------------   43 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHH--------------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH--------------------------------------
Confidence            456666777788888888888888888888765443221111                                      


Q ss_pred             hcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCc--hhhhHHHHHhhcccc-ccchhHHHHHHHHHhcCCCch
Q psy12000        391 DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-DYYDVSQEQVAMYLAQKPTSR  461 (507)
Q Consensus       391 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~--~~~~~~~la~~y~~~-g~~~~A~~~~~~~l~~~P~~~  461 (507)
                            ..++.+++..|++++|+..|+++++..|+  ...++..+|.+|.++ |++++|++.++.+++..|+++
T Consensus        44 ------~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           44 ------LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             ------HHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             ------HHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence                  22344666678888888888888888888  888888888888888 899999999998888888765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.23  E-value=1.9e-10  Score=93.59  Aligned_cols=92  Identities=14%  Similarity=0.143  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS---RIALNLKAC  176 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~~a~  176 (507)
                      ++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.++..+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            57789999999999999999999999999988   799999999999999999999999999999988   444555555


Q ss_pred             hhhhccChHHHHHhhHHH
Q psy12000        177 NTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       177 ~~~~~~~~~~A~~~l~~~  194 (507)
                      +++..|++++|...++.+
T Consensus        85 ~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            555555555555444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.22  E-value=9.4e-11  Score=117.92  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch---------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL---------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      .+..+|.+++.+|+|++|+..|++++..+|++               ..+++++|.|+.++|++++|+..|++++..+|+
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            37789999999999999999999999999988               689999999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL  229 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  229 (507)
                      +..+++.+|.+++.+|++++|...|++++     ...|..+.++.+++.++...+++++|...
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al-----~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVL-----EVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875     35566778899999999999999988653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=9e-11  Score=97.87  Aligned_cols=115  Identities=16%  Similarity=0.011  Sum_probs=98.1

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPP---EDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      ....+.+|.+++..|+|++|+..|+++++.+|++   ..+++.+|.++...|++++|+..++++....+.          
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------   97 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----------   97 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC----------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc----------
Confidence            3455668999999999999999999999999997   789999999999999999999999876432111          


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK  146 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  146 (507)
                                      .+..++.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus        98 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           98 ----------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence                            122367899999999999999999999999999999998888876544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.19  E-value=5e-11  Score=100.75  Aligned_cols=139  Identities=19%  Similarity=0.134  Sum_probs=109.2

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHH
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE------DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLS   80 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~   80 (507)
                      .+...+|.+++..|++++|+..|+++++..|...      .++..+|.++...|++++|+..++++.....         
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------   80 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------   80 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence            3456789999999999999999999998765433      4788999999999999999999987642110         


Q ss_pred             HhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHhcCCHHHHH
Q psy12000         81 HKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK------DLLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~  154 (507)
                       ..++...          ....+..+|.++...|++++|+.++++++...+      ....++..+|.++...|++++|+
T Consensus        81 -~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           81 -QLKDRAV----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             -HTTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             -HhCCcHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence             1101000          012267899999999999999999999998743      23567889999999999999999


Q ss_pred             HHHHHHHhcCC
Q psy12000        155 EQVAMYLAQKP  165 (507)
Q Consensus       155 ~~~~~~l~~~p  165 (507)
                      +.+++++....
T Consensus       150 ~~~~~a~~~~~  160 (164)
T 3ro3_A          150 HFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999886543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.19  E-value=5.6e-12  Score=121.63  Aligned_cols=145  Identities=13%  Similarity=0.077  Sum_probs=92.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ....+|.+++..|+|++|+..|+++++..|.+.        .+...|+++++...+..                      
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~~----------------------  230 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVKN----------------------  230 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHHT----------------------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHHH----------------------
Confidence            345678888899999999999999888888654        13345566655543311                      


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                                   ..++++|.++...|+|++|+..|++++..+|++..+++++|.++..+|++++|+..|++++..+|++
T Consensus       231 -------------~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          231 -------------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             -------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence                         1257899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhh-hccChHHHHHhhHHHH
Q psy12000        168 RIALNLKACNTY-KLFTSRAAENQLKPIL  195 (507)
Q Consensus       168 ~~a~~~~a~~~~-~~~~~~~A~~~l~~~~  195 (507)
                      ..+...++.+.. ..+..+.+...+.+++
T Consensus       298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          298 KAIRRELRALAEQEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            988777776633 3445667777777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.17  E-value=4.8e-11  Score=95.76  Aligned_cols=70  Identities=21%  Similarity=0.232  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      ++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++..+|+++....
T Consensus        30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999986543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.17  E-value=8.6e-11  Score=114.57  Aligned_cols=88  Identities=14%  Similarity=0.046  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +.++|.++..+|++++|+.+|++++..+|+++.+++.+|.++..+|++++|++.|+++++.+|++..+...++.+....+
T Consensus       276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            66788899999999999999999999999999999999999999999999999999999999999888888888877777


Q ss_pred             ChHHHHHh
Q psy12000        183 TSRAAENQ  190 (507)
Q Consensus       183 ~~~~A~~~  190 (507)
                      +.+++...
T Consensus       356 ~~~~a~k~  363 (370)
T 1ihg_A          356 AQKDKEKA  363 (370)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            77766543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.16  E-value=7.1e-10  Score=97.86  Aligned_cols=166  Identities=10%  Similarity=0.013  Sum_probs=93.3

Q ss_pred             HHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHh
Q psy12000        111 FLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ  190 (507)
Q Consensus       111 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~  190 (507)
                      +..|++++|...++.+....+....++..+|.++...|++++|+..+++++.......                      
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------   60 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG----------------------   60 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC----------------------
Confidence            4578888888866555443336778888888888888999999888888875321100                      


Q ss_pred             hHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Q psy12000        191 LKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQL  270 (507)
Q Consensus       191 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  270 (507)
                                 ..+....++.++|.++...|++++|+..+.+....           ....++   .  ....+      
T Consensus        61 -----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~---~--~~~~~------  107 (203)
T 3gw4_A           61 -----------DHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL-----------LASLPE---D--PLAAS------  107 (203)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHSCC---C--HHHHH------
T ss_pred             -----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------HHHcCc---c--HHHHH------
Confidence                       00112234556666666777777776666542100           000000   0  00000      


Q ss_pred             hCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcC--CCc----hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        271 VGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT--SDD----SFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       271 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                                 .++..+|.++...|++++|+.+++++....+  .++    .++.++|.++..+|++++|+.++++++
T Consensus       108 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          108 -----------ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             -----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence                       0122466777777777777777766654321  111    224567777777777777777777765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.16  E-value=4.1e-10  Score=109.74  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHH----------------hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILL----------------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                      .+..+|..++..|+|++|+..|++++.                .+|....++.++|.|+.++|++++|++.+++++..+|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            377899999999999999999999998                7788889999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHH
Q psy12000        166 TSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDL  229 (507)
Q Consensus       166 ~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  229 (507)
                      ++..+++.+|.+++.+|++++|...++++++     ..|..+.++..++.++...++++++...
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-----l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888753     3455667888888888888888877543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.15  E-value=4.3e-10  Score=91.24  Aligned_cols=123  Identities=20%  Similarity=0.254  Sum_probs=97.4

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ....+.+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..++++....+...         ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~   74 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---------ED   74 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---------TC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc---------hh
Confidence            345677999999999999999999999999999999999999999999999999999987643211100         00


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcC
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD  148 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  148 (507)
                      ..          ..+..++.+|.++...|++++|+..|++++...| ++.+...++.+....+
T Consensus        75 ~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YR----------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HH----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            00          0022367889999999999999999999999998 4777777777766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=3.7e-10  Score=116.17  Aligned_cols=156  Identities=10%  Similarity=-0.033  Sum_probs=131.6

Q ss_pred             cccchhhhhHHHHHHHhhcC----------HHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhC--CHHHHHHHHHhhccc
Q psy12000        277 ECDTVPGRQCMASSFFLLRS----------FKDVILYLSSIKSYYTSDDSFNFNFAQAKCALG--QYKEAEEMFLLVQNE  344 (507)
Q Consensus       277 ~~~~~~~~~~la~~~~~~~~----------~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~~~~  344 (507)
                      .|+...+|...+.++...++          +++++.+++++...+|++..+++++++++.+.|  +++++++.+.++++.
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            34566777788899988888          999999999999999999999999999999999  779999999999988


Q ss_pred             CCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh-hHHHHHHHHHHHhhcC
Q psy12000        345 GLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC-HYQEAIDIYKRILLDH  423 (507)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~~l~~~  423 (507)
                      ++.+...|..                                            .+++....| .+++++++++++++.+
T Consensus       139 d~~N~~aW~~--------------------------------------------R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          139 DERNFHCWDY--------------------------------------------RRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             CTTCHHHHHH--------------------------------------------HHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             ccccccHHHH--------------------------------------------HHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            8766544311                                            011222235 7899999999999999


Q ss_pred             CchhhhHHHHHhhcccc--------------ccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        424 KDLLALNVYGAMCYYKL--------------DYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       424 p~~~~~~~~la~~y~~~--------------g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      |.+..++.+.+.++.++              +.+++|++.+++++.++|++..+++.+++++.....
T Consensus       175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            99999999999998885              678999999999999999999999999999876543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.11  E-value=3.2e-11  Score=96.79  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHHHhhc---CCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHH
Q psy12000        407 CHYQEAIDIYKRILLD---HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQ  483 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~---~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~  483 (507)
                      |++++|+..|+++++.   +|+++.++..+|.+|.++|++++|+..++++++.+|+++.++..+|.+++.+++.+.|...
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            6677777777777777   4777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhCCCCc
Q psy12000        484 LKPILVSAGPRV  495 (507)
Q Consensus       484 ~~~~~~~~~~~~  495 (507)
                      |++.++..|.+.
T Consensus        84 ~~~al~~~p~~~   95 (117)
T 3k9i_A           84 LLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHCCCH
T ss_pred             HHHHHHhCCCcH
Confidence            777777777663

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.11  E-value=5.7e-10  Score=90.52  Aligned_cols=66  Identities=11%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      .++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++...|++
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            367899999999999999999999999999999999999999999999999999999999887755

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.10  E-value=1.2e-10  Score=91.92  Aligned_cols=86  Identities=15%  Similarity=0.060  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIALNLKA  175 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~a~~~~a  175 (507)
                      .+..+|.+++..|++++|+..|++++..+|+++.+++++|.++..+|++++|++.+++++..+|++      ..++..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998      44444444


Q ss_pred             hhhhhccChHHH
Q psy12000        176 CNTYKLFTSRAA  187 (507)
Q Consensus       176 ~~~~~~~~~~~A  187 (507)
                      .++...|+++.|
T Consensus        86 ~~~~~~~~~~~a   97 (111)
T 2l6j_A           86 LAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHCCCCC
T ss_pred             HHHHHHHhHhhh
Confidence            444444433333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.08  E-value=1.9e-10  Score=110.86  Aligned_cols=127  Identities=16%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL-----------------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  164 (507)
                      .+..+|..++..|+|++|+..|++++...|++.                 .+++++|.|+.++|++++|+..+++++..+
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            377899999999999999999999999999877                 489999999999999999999999999999


Q ss_pred             CCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHH-HhhccHHHHHHHHHhc
Q psy12000        165 PTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYH-LKQEEHQEAFDLIKNL  233 (507)
Q Consensus       165 p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~l~~~  233 (507)
                      |++..+++.+|.+++.+|++++|...|++++     ...|..+.++.+++.+. ...+..+++...+.++
T Consensus       261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-----~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQ-----KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-----C---------------------------------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888888888888888888887652     34455566677777663 3345555666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.01  E-value=1.7e-09  Score=91.09  Aligned_cols=130  Identities=13%  Similarity=-0.038  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~a  170 (507)
                      +..+|.++...|++++|+.+|++++...|...      .++..+|.++...|++++|++.+++++...|..      ..+
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            67899999999999999999999998876433      478899999999999999999999998754332      234


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhC-CCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSIL-PPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      +..+|.++...|++++|...+++.+...- ....+..+.++.++|.++...|++++|+..+.+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55667777777888888777776542100 011122334567777777777777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=3e-09  Score=80.35  Aligned_cols=79  Identities=22%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      .+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.++..++.++..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            3778999999999999999999999999999999999999999999999999999999999999998877766665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.97  E-value=2.7e-10  Score=89.93  Aligned_cols=90  Identities=13%  Similarity=0.041  Sum_probs=77.5

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCc------hhhhhHHHhh
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS------RIALNLKACN  470 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~~~~~  470 (507)
                      ..+|.+++..|+|++|+..|++++..+|+++.+++.+|.+|.++|++++|+..++++++++|++      +.++..++..
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~   87 (111)
T 2l6j_A            8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA   87 (111)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence            4467788888999999999999999999999999999999999999999999999999999999      7777778888


Q ss_pred             hhhcCChHHHHHHHHH
Q psy12000        471 TYKLFTSRAAENQLKP  486 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~  486 (507)
                      +..++..+.+...|++
T Consensus        88 ~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           88 QGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHCCCCCSSSSSS
T ss_pred             HHHHHhHhhhHhHHHH
Confidence            7776655555444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.88  E-value=3.1e-09  Score=82.00  Aligned_cols=91  Identities=9%  Similarity=-0.067  Sum_probs=77.2

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhcCCchhh-hHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~-~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      ..+..++..|++++|+..|+++++.+|+++. +++.+|.+|.++|++++|+..|+++++.+|+++.++..        ..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3456777889999999999999999999999 99999999999999999999999999999999988642        12


Q ss_pred             hHHHHHHHHHHHHhCCCCcc
Q psy12000        477 SRAAENQLKPILVSAGPRVR  496 (507)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~  496 (507)
                      ...+...|+++....|.+..
T Consensus        77 ~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHhccCccccc
Confidence            35556677777777777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.86  E-value=8.2e-09  Score=77.91  Aligned_cols=77  Identities=22%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      ..++.+++..|++++|+..|++++...|+++.+++.+|.+|.++|++++|+..++++++.+|+++.++..++.++..
T Consensus        13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            44567788889999999999999999999999999999999999999999999999999999999999988888764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.82  E-value=4.1e-06  Score=84.62  Aligned_cols=182  Identities=8%  Similarity=-0.052  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcC
Q psy12000        298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLG  377 (507)
Q Consensus       298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  377 (507)
                      +.+...|++++...|..+.+++..+..+...|+.++|...|++++.. |.+...+..+ +........++.....+....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y-~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY-GLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH-HHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH-HhhcchhHHHHHHHHHHHhhc
Confidence            44567888888888988888898999999999999999999999877 6655444321 111000000111110000000


Q ss_pred             CcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccc-cchhHHHHHHHHHhc
Q psy12000        378 DEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD-YYDVSQEQVAMYLAQ  456 (507)
Q Consensus       378 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~~l~~  456 (507)
                      ..+...   .........+..+.......+..+.|..+|+++ ...+....++...|...+..| +.+.|..+|+.+++.
T Consensus       274 ~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          274 AESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             cchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            000000   000000011122222222346788899999998 433223334433455555556 588999999999999


Q ss_pred             CCCchhhhhHHHhhhhhcCChHHHHHHHH
Q psy12000        457 KPTSRIALNLKACNTYKLFTSRAAENQLK  485 (507)
Q Consensus       457 ~P~~~~a~~~~~~~~~~~~~~~~~~~~~~  485 (507)
                      .|+++..+...+.....+++.+.+++.|.
T Consensus       350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~e  378 (493)
T 2uy1_A          350 HPDSTLLKEEFFLFLLRIGDEENARALFK  378 (493)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99887654433332223333444444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.82  E-value=1.7e-08  Score=77.77  Aligned_cols=68  Identities=12%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                      +..|.++...|++++|+..|++++..+|+++. +++.+|.++..+|++++|++.|++++..+|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56889999999999999999999999999999 999999999999999999999999999999998765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.78  E-value=1.1e-08  Score=81.28  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhC
Q psy12000        412 AIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSA  491 (507)
Q Consensus       412 Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (507)
                      |+..|++++..+|+++.+++.+|.+|...|++++|+..++++++.+|+++.++..+|.+++.+++.+.|...|++.++..
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            44444444444444444444445555555555555555555555555544444444444444444444444444444444


Q ss_pred             C
Q psy12000        492 G  492 (507)
Q Consensus       492 ~  492 (507)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.75  E-value=2.1e-08  Score=77.64  Aligned_cols=68  Identities=15%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                      +..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|++.|++++...|..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            34478999999999999999999999999999999999999999999999999999999999876644

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=1.2e-08  Score=78.93  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcC
Q psy12000        396 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  475 (507)
Q Consensus       396 ~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~  475 (507)
                      ...+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|.++|++++|+..|++++++.|++...            
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~------------   77 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ------------   77 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch------------
Confidence            45677888889999999999999999999999999999999999999999999999999987654432            


Q ss_pred             ChHHHHHHHHHHHHhCCCCccCCC
Q psy12000        476 TSRAAENQLKPILVSAGPRVRFPP  499 (507)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~  499 (507)
                         .+..+++.++...|.....++
T Consensus        78 ---~~~~~l~~~l~~~~~~~~~~~   98 (100)
T 3ma5_A           78 ---KDLSELQDAKLKAEGLEHHHH   98 (100)
T ss_dssp             ---HHHHHHHHHHHHHHTTC----
T ss_pred             ---hHHHHHHHHHHHccccccccc
Confidence               233356667776666655543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.73  E-value=5.4e-08  Score=77.26  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHH
Q psy12000        118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKP  193 (507)
Q Consensus       118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~  193 (507)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|...+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4667777777777777777777777777777777777777777777777665555555555555555555444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=1e-07  Score=95.69  Aligned_cols=127  Identities=8%  Similarity=-0.001  Sum_probs=99.9

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcC-----CCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcC
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHL-----PNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLG   84 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~   84 (507)
                      +..+..+|+|++|+..|+++++.     .|+++   ..+.++|.+|..+|+|++|+.+++++..          +     
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----------i-----  380 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----------G-----  380 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------H-----
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------H-----
Confidence            44577899999999999999874     45555   5688999999999999999999887632          0     


Q ss_pred             ChhHHHHHHHHHh-hcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCc---hhHHHHHHHHHHHhcCCHHH
Q psy12000         85 DEKSLMEYHQKLE-DSLE---EQLCLASIHFLRCHYQEAIDIYKRILLD-----HKD---LLALNVYGAMCYYKLDYYDV  152 (507)
Q Consensus        85 ~~~~~~~~~~~l~-~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~~  152 (507)
                             ....+. ++|.   .+.+||.+|..+|+|++|+.+|++++.+     .|+   ..++..+++.++..++.+++
T Consensus       381 -------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          381 -------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             -------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence                   011111 1121   2778999999999999999999999975     344   45667789999999999999


Q ss_pred             HHHHHHHHH
Q psy12000        153 SQEQVAMYL  161 (507)
Q Consensus       153 A~~~~~~~l  161 (507)
                      |...|.++.
T Consensus       454 ae~~~~~~~  462 (490)
T 3n71_A          454 NEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.68  E-value=2.1e-07  Score=93.48  Aligned_cols=129  Identities=8%  Similarity=0.003  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHH-
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ-----KPTSRI-  169 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-  169 (507)
                      +..+..+..+|+|++|+..|++++...        |+...++.+||.+|..+|+|++|+.++++++..     .|+++. 
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            345556778999999999999999863        455678899999999999999999999998853     455543 


Q ss_pred             --HHHHHhhhhhhccChHHHHHhhHHHHH---hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        170 --ALNLKACNTYKLFTSRAAENQLKPILV---SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       170 --a~~~~a~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                        .++.+|.++..+|++++|+..+++++.   ..+....|...+...+++.++..++.|++|...+.+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~  460 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK  460 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              466667777777777777777766543   334444444445556666666667777766665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.66  E-value=2.3e-07  Score=76.47  Aligned_cols=112  Identities=11%  Similarity=-0.110  Sum_probs=94.5

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED   98 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (507)
                      .+|+++|+.+|+++.+..+  +.+.  +|.+|...+.+++|+.+++++.+.                            .
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------g   55 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL----------------------------N   55 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC----------------------------C
Confidence            4689999999999998764  3444  999999999999999998876321                            1


Q ss_pred             cHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q psy12000         99 SLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQK  164 (507)
Q Consensus        99 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~  164 (507)
                      ++...+.+|.+|..    .+++++|+.+|+++.+.  .++.+.++||.+|..    .+++++|+++|+++.+..
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            23347789999998    89999999999999876  678899999999999    999999999999998763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=2.6e-07  Score=75.76  Aligned_cols=75  Identities=20%  Similarity=0.185  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhh---cHHHHHHHHHHHHHhC-C-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        103 QLCLASIHFLRC---HYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       103 ~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      .+.+|..+.+.+   +.++++.++++++..+ | +..+.+|++|..++++|+|++|+++++++++.+|++..+..++..+
T Consensus        35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            556666666655   6778999999999988 7 6789999999999999999999999999999999999887765444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.61  E-value=3.6e-07  Score=71.07  Aligned_cols=75  Identities=15%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      +.+.+.+|..++.+|+|..|+..|++++...       +....++..+|.|++++|++++|+.+++++++.+|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4568899999999999999999999999864       356789999999999999999999999999999999987754


Q ss_pred             HH
Q psy12000        173 LK  174 (507)
Q Consensus       173 ~~  174 (507)
                      .+
T Consensus        85 n~   86 (104)
T 2v5f_A           85 NL   86 (104)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.50  E-value=2.8e-06  Score=80.53  Aligned_cols=141  Identities=9%  Similarity=-0.051  Sum_probs=98.3

Q ss_pred             HHHHHHhhcC---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000         12 LGYCHFHLGQ---YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus        12 lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      .|..+...++   +.+|+.+|+++++++|+.+.++-.++.++.....+.         .....  .. ..+       ..
T Consensus       202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~---------~~~~~--~~-~~l-------~~  262 (372)
T 3ly7_A          202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH---------PLDEK--QL-AAL-------NT  262 (372)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS---------CCCHH--HH-HHH-------HH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC---------CCchh--hH-HHH-------HH
Confidence            4666665544   588999999999999999999988888887221110         00000  00 000       00


Q ss_pred             HHHHHHHHh---hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12000         89 LMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        89 ~~~~~~~l~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  165 (507)
                      .......+.   ..+..+..+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|++.|++++.++|
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            000001111   12233667788888899999999999999999986 56778899999999999999999999999999


Q ss_pred             CcHHHHHH
Q psy12000        166 TSRIALNL  173 (507)
Q Consensus       166 ~~~~a~~~  173 (507)
                      ..+. +++
T Consensus       342 ~~~t-~~~  348 (372)
T 3ly7_A          342 GANT-LYW  348 (372)
T ss_dssp             SHHH-HHH
T ss_pred             CcCh-HHH
Confidence            8874 443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.48  E-value=4.6e-07  Score=70.48  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHhhcC-------CchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        395 EQLCLASIHFLRCHYQEAIDIYKRILLDH-------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       395 ~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~-------p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      +-+.+|..++..++|..|+..|+++++..       +....++..+|.||+++|++++|+..++++++..|+++.+++.+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            34567889999999999999999998742       34567889999999999999999999999999999999997766


Q ss_pred             H
Q psy12000        468 A  468 (507)
Q Consensus       468 ~  468 (507)
                      .
T Consensus        87 ~   87 (104)
T 2v5f_A           87 K   87 (104)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.48  E-value=6.9e-07  Score=67.65  Aligned_cols=70  Identities=9%  Similarity=-0.101  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        100 LEEQLCLASIHFLRCH---YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      ++.+..+|.+++..++   .++|...+++++..+|+++.+.+.+|..++..|+|++|+.++++++..+|.++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4457788888876666   799999999999999999999999999999999999999999999999998543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.32  E-value=1.2e-06  Score=66.23  Aligned_cols=67  Identities=9%  Similarity=-0.108  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhHhh---HHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchh
Q psy12000        396 QLCLASIHFLRCH---YQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  462 (507)
Q Consensus       396 ~~~l~~~~~~~~~---~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~  462 (507)
                      ...++.+.+..++   .++|...+++++..+|+++.+.+.+|..+++.|+|++|+..|+++++.+|+++.
T Consensus         9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            3445555554433   577777777777777777777777777777777777777777777777777444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.30  E-value=1e-05  Score=66.39  Aligned_cols=108  Identities=8%  Similarity=-0.129  Sum_probs=82.9

Q ss_pred             hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHH
Q psy12000        113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAE  188 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~  188 (507)
                      .+++++|+.+|+++.+..+.  .+.  +|.+|...+..++|++.|+++.+.  .++.+.+.++.++..    .+++++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46788899999998877633  333  888888888888899999988876  567777777777776    67788888


Q ss_pred             HhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhc
Q psy12000        189 NQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNL  233 (507)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~  233 (507)
                      ..+++..+       .-.+.+..+||.+|..    .+++++|+..+++.
T Consensus        82 ~~~~~Aa~-------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           82 QYYSKACG-------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            88887653       1346778888888888    78888888877653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.27  E-value=4.5e-05  Score=69.37  Aligned_cols=82  Identities=10%  Similarity=-0.132  Sum_probs=66.3

Q ss_pred             hcHHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCc-HHHHHHHhhhhhh-ccCh
Q psy12000        114 CHYQEAIDIYKRILLDHKD--LLALNVYGAMCYYKL-----DYYDVSQEQVAMYLAQKPTS-RIALNLKACNTYK-LFTS  184 (507)
Q Consensus       114 g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~-~~a~~~~a~~~~~-~~~~  184 (507)
                      +...+|...++++++++|+  +..++..+|.+|...     |+.++|.++|++++.++|+. ..+....|..++. .|+.
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            3467899999999999998  567999999999995     99999999999999999975 7777666666655 3666


Q ss_pred             HHHHHhhHHHH
Q psy12000        185 RAAENQLKPIL  195 (507)
Q Consensus       185 ~~A~~~l~~~~  195 (507)
                      +.+...+++.+
T Consensus       257 ~~a~~~L~kAL  267 (301)
T 3u64_A          257 AGFDEALDRAL  267 (301)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.24  E-value=0.00016  Score=72.99  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=98.7

Q ss_pred             hhHHHHHHHhhcC---------HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHH
Q psy12000          9 DAWLGYCHFHLGQ---------YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFH   78 (507)
Q Consensus         9 ~~~lg~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~   78 (507)
                      ..|..++-+..++         .+.....|++++...|..+.+|+..+..+...|+.++|..+++++... |... +.+.
T Consensus       173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~  251 (493)
T 2uy1_A          173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY  251 (493)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred             HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            3677777776654         456788999999999999999999999999999999999999988765 5443 2332


Q ss_pred             HHHhcCChhHHHHHHHHH------------hhcH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q psy12000         79 LSHKLGDEKSLMEYHQKL------------EDSL-EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY  145 (507)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l------------~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  145 (507)
                      .+.............+..            ...+ ..+...+......++.+.|..+|+++ ...+....++...|.+-.
T Consensus       252 y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~  330 (493)
T 2uy1_A          252 YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEY  330 (493)
T ss_dssp             HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHH
Confidence            222211111111111110            0011 11445555555667777788888777 322223344444455555


Q ss_pred             hcC-CHHHHHHHHHHHHhcCCCcHH
Q psy12000        146 KLD-YYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       146 ~~g-~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      ..+ +.+.|..+|+.+++..|+.+.
T Consensus       331 ~~~~d~~~ar~ife~al~~~~~~~~  355 (493)
T 2uy1_A          331 YATGSRATPYNIFSSGLLKHPDSTL  355 (493)
T ss_dssp             HHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred             HHCCChHHHHHHHHHHHHHCCCCHH
Confidence            544 477777777777777676654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=3.7e-06  Score=68.96  Aligned_cols=78  Identities=19%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhHh---hHHHHHHHHHHHhhcC-C-chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        393 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       393 ~~~~~~l~~~~~~~~---~~~~Ai~~~~~~l~~~-p-~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      .+....+++.....+   +++++|..++.+++.+ | +..+..|++|..|+++|+|++|+..++.+|+++|+|..|..++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            345566777777644   8899999999999988 8 5678999999999999999999999999999999999998887


Q ss_pred             Hhh
Q psy12000        468 ACN  470 (507)
Q Consensus       468 ~~~  470 (507)
                      ..+
T Consensus       112 ~~i  114 (152)
T 1pc2_A          112 RLI  114 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.17  E-value=7.9e-05  Score=67.75  Aligned_cols=129  Identities=9%  Similarity=0.048  Sum_probs=90.8

Q ss_pred             hhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhh----ccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhh
Q psy12000        219 KQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQ----DTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLL  294 (507)
Q Consensus       219 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  294 (507)
                      ++++.++--..+.+..+.++...+..|.+......    ...+....+.|...++++.+.++....=.++..||..|...
T Consensus       133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v  212 (301)
T 3u64_A          133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA  212 (301)
T ss_dssp             TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred             HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence            34433333444556667777777777776655322    13456677777777765543322211222566799999884


Q ss_pred             -----cCHHHHHHHHHHhhhhcCCC-chHHHHHHHHHHh-hCCHHHHHHHHHhhcccCCC
Q psy12000        295 -----RSFKDVILYLSSIKSYYTSD-DSFNFNFAQAKCA-LGQYKEAEEMFLLVQNEGLK  347 (507)
Q Consensus       295 -----~~~~~Ai~~~~~~~~~~~~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~~~~~~~~  347 (507)
                           |+.++|..+|++++.++|+. ..+++..|..+.. +|++++|...+++++..++.
T Consensus       213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence                 99999999999999999975 7888889999988 49999999999999865543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.06  E-value=2.5e-05  Score=77.08  Aligned_cols=93  Identities=9%  Similarity=-0.050  Sum_probs=64.3

Q ss_pred             HHHHhhcHHHHHHHHHHHHHhC-----C---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        109 IHFLRCHYQEAIDIYKRILLDH-----K---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       109 ~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      .....|+|++|+..|++++.+.     |   +...++.+||.+|..+|+|++|+.++++++...                
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~----------------  370 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY----------------  370 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----------------
Confidence            3345688999999999999862     3   445678899999999999999999999987431                


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                                 +    +.+....|.....+.+||.+|..+|+|++|...+.+
T Consensus       371 -----------~----~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          371 -----------S----KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             -----------H----HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------H----HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence                       0    112222333334456666666666666666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.06  E-value=1.8e-05  Score=78.12  Aligned_cols=112  Identities=9%  Similarity=0.029  Sum_probs=82.4

Q ss_pred             HHHHhhcCHHHHHHHHHHHhcC-----CCCCh---hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000         14 YCHFHLGQYKQALGIYETLRHL-----PNPPE---DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ..+..+|+|++|+..|+++++.     .|+++   ..+.++|.+|..+|+|++|+.+++++..          +      
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~----------i------  358 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME----------P------  358 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------H------
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------h------
Confidence            4466789999999999999975     35555   5678999999999999999999987632          0      


Q ss_pred             hhHHHHHHHHHh-hcHH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CCchh---HHHHHHHHHHHhc
Q psy12000         86 EKSLMEYHQKLE-DSLE---EQLCLASIHFLRCHYQEAIDIYKRILLD-----HKDLL---ALNVYGAMCYYKL  147 (507)
Q Consensus        86 ~~~~~~~~~~l~-~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~  147 (507)
                            +...+. .+|.   .+++||.+|..+|++++|+.+|++++.+     .|+++   ++..+|+.+...+
T Consensus       359 ------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          359 ------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             ------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence                  001111 1121   2778999999999999999999999976     35554   4555666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.03  E-value=2.4e-05  Score=77.32  Aligned_cols=58  Identities=5%  Similarity=-0.057  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDH--------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      ....-+..+|+|++|+..|++++...        |+...++.++|.+|..+|+|++|+.++++++.
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33445668899999999999999763        34456788999999999999999999999874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.01  E-value=7.8e-05  Score=70.69  Aligned_cols=73  Identities=8%  Similarity=-0.005  Sum_probs=60.5

Q ss_pred             HHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        399 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       399 l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      ++......|++++|+..+++++..+|+ ...+..+|+++.-.|++++|++.|++++.++|..+ .+.+...+-|-
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l~F~  355 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIENGIFQ  355 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHHHSSSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHhCceee
Confidence            344556679999999999999999986 44557789999999999999999999999999987 45655555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.00  E-value=1.3e-05  Score=63.26  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhH---hhHHHHHHHHHHHhhcC-C-chhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        396 QLCLASIHFLR---CHYQEAIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       396 ~~~l~~~~~~~---~~~~~Ai~~~~~~l~~~-p-~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ...++|.....   .+..++|.+++.++... | ..-+..+++|..++++|+|++|...++.+|++.|+|..|..++..+
T Consensus        38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455555433   46678999999999987 7 4567899999999999999999999999999999999999988776


Q ss_pred             h
Q psy12000        471 T  471 (507)
Q Consensus       471 ~  471 (507)
                      .
T Consensus       118 ~  118 (126)
T 1nzn_A          118 D  118 (126)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.99  E-value=2.2e-05  Score=62.00  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             HHHHHHHHHh---HhhHHHHHHHHHHHhhcCCch-hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        396 QLCLASIHFL---RCHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~~-~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                      ...++|....   ..+..++|.+++.++..+|.. -+..+++|..++|+|+|++|..+.+.+|++.|+|..|..++..+-
T Consensus        43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3444444443   257889999999999999854 668899999999999999999999999999999999999888774


Q ss_pred             h
Q psy12000        472 Y  472 (507)
Q Consensus       472 ~  472 (507)
                      -
T Consensus       123 ~  123 (134)
T 3o48_A          123 D  123 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.96  E-value=5.7e-05  Score=74.49  Aligned_cols=68  Identities=7%  Similarity=0.077  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh--------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCcHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLD--------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA-----QKPTSRI  169 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~  169 (507)
                      +.++|.+|..+|+|++|+.+|++++..        +|+....+.+||.+|..+|++++|+.++++++.     .-|+++.
T Consensus       343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            668999999999999999999999976        245556789999999999999999999999985     3577765


Q ss_pred             H
Q psy12000        170 A  170 (507)
Q Consensus       170 a  170 (507)
                      .
T Consensus       423 ~  423 (433)
T 3qww_A          423 I  423 (433)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.94  E-value=3e-05  Score=61.11  Aligned_cols=77  Identities=19%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhhcHHH---HHHHHHHHHHhC-C-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        101 EEQLCLASIHFLRCHYQE---AIDIYKRILLDH-K-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       101 ~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      ...+.+|+.+.+..+...   +|.+++.++..+ | ...+.+|.+|..++++|+|++|+.+++.+++.+|++..|..++.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            447888888887766665   999999999988 6 57889999999999999999999999999999999999877665


Q ss_pred             hh
Q psy12000        176 CN  177 (507)
Q Consensus       176 ~~  177 (507)
                      .+
T Consensus       116 ~i  117 (126)
T 1nzn_A          116 LI  117 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.92  E-value=4.3e-05  Score=61.11  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             HHHHHHHHHh---HhhHHHHHHHHHHHhhcCCc-hhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        396 QLCLASIHFL---RCHYQEAIDIYKRILLDHKD-LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       396 ~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~-~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      ...++|....   ..+..++|.+++.++...|+ .-+..+++|..++|+|+|++|..+.+.+|++.|+|..|..++..+
T Consensus        42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3445555443   25778999999999999885 456889999999999999999999999999999999999988776

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.80  E-value=0.00021  Score=56.38  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        100 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       100 ~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      +...+.+|+.+.+..   +..++|.+++.++..+| ...+.++.+|..++++|+|++|.++.+.+++..|++..|..++.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            344788888887754   45589999999999999 46889999999999999999999999999999999999877665


Q ss_pred             hh
Q psy12000        176 CN  177 (507)
Q Consensus       176 ~~  177 (507)
                      .|
T Consensus       120 ~I  121 (134)
T 3o48_A          120 MV  121 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.80  E-value=0.00026  Score=71.46  Aligned_cols=165  Identities=10%  Similarity=-0.026  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHhCCCcccccchhh
Q psy12000        210 RLNLVIYHLKQEEHQEAFDLIKNLEP----SVPQEYILKAVVQVTIGQD--TGSREMVKAAQALFQLVGSSQSECDTVPG  283 (507)
Q Consensus       210 ~~~l~~~~~~~~~~~~A~~~l~~~~~----~~~~~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  283 (507)
                      ...+...+.+.|+.++|++++.++..    -+...+...-.++...+..  ......++.|.++|+........|+. .+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-~t  107 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-AT  107 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-HH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-HH
Confidence            44556788889999999998876521    1222222111111111111  12345678888888765444334443 34


Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHhhhhc--CCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCC-CchhhhhhhhcccC
Q psy12000        284 RQCMASSFFLLRSFKDVILYLSSIKSYY--TSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGL-KNDYVYISHLTKCS  360 (507)
Q Consensus       284 ~~~la~~~~~~~~~~~Ai~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~  360 (507)
                      +..+...+.+.|++++|+++|+.+....  |+. ..+..+-..|.+.|+.++|.+.|+++..... ++...|. .|..++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~-~Li~~~  185 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA-ALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH
Confidence            4567888999999999999999887654  333 3344477889999999999999999875443 3444443 355677


Q ss_pred             ccchhhhHHHHHHHHcC
Q psy12000        361 PSRAKTRLSFHLSHKLG  377 (507)
Q Consensus       361 ~~~~~~~~A~~~~~~~~  377 (507)
                      .+.|+.++|++++.++.
T Consensus       186 ~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHH
Confidence            78888999988877653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.73  E-value=0.00035  Score=55.92  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        100 LEEQLCLASIHFLRC---HYQEAIDIYKRILLDHK-DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       100 ~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      ++..+++|+.+.+..   +-.++|.+++.++...| ...+..|.||..++++|+|++|.++.+.+++..|++..+..++.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            344788888888755   44589999999999998 57789999999999999999999999999999999998877665


Q ss_pred             hh
Q psy12000        176 CN  177 (507)
Q Consensus       176 ~~  177 (507)
                      .+
T Consensus       119 ~I  120 (144)
T 1y8m_A          119 MV  120 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.70  E-value=0.0039  Score=62.83  Aligned_cols=162  Identities=8%  Similarity=-0.029  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhc--CCCcHHHH
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDH--KDLLALNVYGAMCYYKL---------DYYDVSQEQVAMYLAQ--KPTSRIAL  171 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~--~p~~~~a~  171 (507)
                      .+-..+.+.|+.++|+++|+++....  |+... +..+-.++...         +..++|.++|+++...  .|+. ..+
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t-yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-~ty  108 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH-YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-ATF  108 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-HHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-HHH
Confidence            34456677888888888888887764  44333 32332333332         3356777777776543  3433 234


Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTI  251 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  251 (507)
                      +.+...+.+.|+.++|...|+.+.+..   ..| +...+..+...|.+.|+.++|.+++.++                  
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g---~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M------------------  166 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFG---IQP-RLRSYGPALFGFCRKGDADKAYEVDAHM------------------  166 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTT---CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-ccceehHHHHHHHHCCCHHHHHHHHHHH------------------
Confidence            444444455666666666666554211   111 1233445555566666666666555443                  


Q ss_pred             hhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhc
Q psy12000        252 GQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYY  311 (507)
Q Consensus       252 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~  311 (507)
                                          ......|+. ..+..|..++.+.|+.++|.+++++..+..
T Consensus       167 --------------------~~~G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          167 --------------------VESEVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             --------------------HHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             --------------------HhcCCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence                                111112221 223346677888888888888888876544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.0032  Score=51.89  Aligned_cols=119  Identities=13%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCcHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---------ALNVYGAMCYYKLDYYDVSQEQVAMYLAQK---PTSRIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~a  170 (507)
                      ++.-...++..|.|+.|+-....++....+++         .+++.+|.+++..++|..|...|+++++..   |....+
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34455667888999999999988776643322         478889999999999999999999987532   222211


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhCCC--CCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC--CCChHH
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSILPP--LIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE--PSVPQE  240 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~--~~~~~~  240 (507)
                      .   ..+    +.        +    ...+.  ......+.++.++.+|.+.+++++|+..++.+.  ..+|..
T Consensus       103 ~---~~~----~~--------~----ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv  157 (167)
T 3ffl_A          103 R---PST----GN--------S----ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI  157 (167)
T ss_dssp             ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred             c---ccc----cc--------c----CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence            0   000    00        0    00000  012245788999999999999999999999874  345543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.01  E-value=0.002  Score=53.05  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=51.5

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcC------CCC-------------------ChhhHHHHHHHHHhhccHHHHHHH
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHL------PNP-------------------PEDTEFNIASCYFYLGMYLQANQI   62 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~-------------------~~~~~~~la~~~~~~g~~~eA~~~   62 (507)
                      +.+++|.++|..|+|.+|...|+++|+.      .|.                   +.++.|.++.|+..+|++++|+..
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence            5688999999999999999999998653      111                   126889999999999999999999


Q ss_pred             HHhCCC
Q psy12000         63 LEKVPP   68 (507)
Q Consensus        63 ~~~~~~   68 (507)
                      ++.++.
T Consensus       145 Le~Ip~  150 (167)
T 3ffl_A          145 LDGIPS  150 (167)
T ss_dssp             HHTSCG
T ss_pred             HhcCCc
Confidence            999874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.73  E-value=0.018  Score=46.43  Aligned_cols=115  Identities=8%  Similarity=-0.028  Sum_probs=84.0

Q ss_pred             CCCCChhhHHHHHHHHHhhccH------HHHHHHHHhCCCC-ccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHH
Q psy12000         35 LPNPPEDTEFNIASCYFYLGMY------LQANQILEKVPPS-RAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLA  107 (507)
Q Consensus        35 ~~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la  107 (507)
                      ..|++++.|.......-..|+.      +.-.+.|+++... ++...         .....   |.       --+...|
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~---------~~wrr---YI-------~LWIrYA   68 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY---------GQNES---FA-------RIQVRFA   68 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG---------TTCHH---HH-------HHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc---------ccHHH---HH-------HHHHHHH
Confidence            4799999999999888888998      7777888876431 12110         00000   00       0022233


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                      .. ...++.++|.++|+.+++.+..+..++..-|..-.+.|+.++|.+++.+++...|....
T Consensus        69 ~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           69 EL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            22 44589999999999999998888889999999999999999999999999999888765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.60  E-value=0.22  Score=40.79  Aligned_cols=111  Identities=16%  Similarity=0.118  Sum_probs=78.0

Q ss_pred             chhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCC----ccccchHHHHHHh
Q psy12000          7 LTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPS----RAKTRLSFHLSHK   82 (507)
Q Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~~~~   82 (507)
                      +-.+.++-..+..|.|..|+-.+..     -+.....++.+.||.+.++|..|+.+++++...    ++...+  .+-.-
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~--~~~~f  106 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA--RIQEM  106 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--HHHTT
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc--cccee
Confidence            5566788899999999998877643     345677889999999999999999999887532    222211  11111


Q ss_pred             cCChhHHHHHHHHHhhcHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEE-QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLA  135 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  135 (507)
                      +-+.++           .+- +..+|.+..+.|+-++||.+|.......|-.+.
T Consensus       107 fvd~~D-----------kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          107 FVDPGD-----------EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             SCCTTC-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             eeccch-----------HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            111111           111 456899999999999999999999988875544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.17  Score=42.28  Aligned_cols=56  Identities=18%  Similarity=0.026  Sum_probs=46.2

Q ss_pred             ccchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000          5 DSLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP   68 (507)
Q Consensus         5 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~   68 (507)
                      +++.++.+   ..+.|+++.|.+..+++     ++...|..+|......|+++-|+.+|.++.+
T Consensus         7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B            7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            44555554   46789999999998776     5677899999999999999999999998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.73  E-value=0.2  Score=53.40  Aligned_cols=45  Identities=18%  Similarity=0.090  Sum_probs=24.4

Q ss_pred             HHHHhhcCHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHH
Q psy12000         14 YCHFHLGQYKQALG-IYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQIL   63 (507)
Q Consensus        14 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~   63 (507)
                      ......+++++|.+ .+..    -|+ ......++..+...|.+++|+...
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~  652 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNIS  652 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred             hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecC
Confidence            34455677777765 3311    110 122255666667777777776543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.42  E-value=0.14  Score=41.32  Aligned_cols=119  Identities=8%  Similarity=-0.071  Sum_probs=79.6

Q ss_pred             hcCCCchHHHHHHHHHHhhCCH------HHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHH
Q psy12000        310 YYTSDDSFNFNFAQAKCALGQY------KEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLM  383 (507)
Q Consensus       310 ~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  383 (507)
                      ..|++++.++.......+.|+.      ++-++.|++++..-|+..  ...|           +.=+.+           
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~w-----------rrYI~L-----------   63 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQN-----------ESFARI-----------   63 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTC-----------HHHHHH-----------
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccH-----------HHHHHH-----------
Confidence            3577777777778888888888      888899999875443321  1111           100000           


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhh
Q psy12000        384 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  463 (507)
Q Consensus       384 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a  463 (507)
                                  ++.++ .....++.++|.++|+.++..+..+..++...|---.+.|+.++|.+.+.+++.+-|.....
T Consensus        64 ------------WIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           64 ------------QVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             ------------HHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             ------------HHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence                        01111 11112678889999999988787786677666766678999999999999999999987765


Q ss_pred             hh
Q psy12000        464 LN  465 (507)
Q Consensus       464 ~~  465 (507)
                      +.
T Consensus       131 le  132 (161)
T 4h7y_A          131 LE  132 (161)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.29  E-value=1.9  Score=41.39  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             HhHHHHHHHHHhhccHHHHHHHHHhcCCC---ChHHH---HHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccch
Q psy12000        208 ESRLNLVIYHLKQEEHQEAFDLIKNLEPS---VPQEY---ILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTV  281 (507)
Q Consensus       208 ~~~~~l~~~~~~~~~~~~A~~~l~~~~~~---~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  281 (507)
                      .+-+.||.+|.++|++++-.+++....|-   -+.+.   +.+..+-....-.......++--.+.++....   +...+
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~r~f   96 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ---EKRTF   96 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHHH
Confidence            35678999999999999998888765432   22222   22222222211111111111111111111100   00011


Q ss_pred             -hhh--hHHHHHHHhhcCHHHHHHHHHHhhhhcCC--Cc----hHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        282 -PGR--QCMASSFFLLRSFKDVILYLSSIKSYYTS--DD----SFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       282 -~~~--~~la~~~~~~~~~~~Ai~~~~~~~~~~~~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                       ...  ..||..|+..|+|.+|+..+.++......  +.    .++..-..+|..+|++.++...|.++.
T Consensus        97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A           97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence             111  15788888999999998877766543222  22    333445677888889888888888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.17  E-value=1.1  Score=36.80  Aligned_cols=124  Identities=13%  Similarity=0.038  Sum_probs=88.1

Q ss_pred             HHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHH
Q psy12000         16 HFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQK   95 (507)
Q Consensus        16 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (507)
                      .+.-.||+.++-.-.-+   -|..++....++.+++..|.|..|+-.+.+...                           
T Consensus        12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT---------------------------   61 (242)
T 3kae_A           12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNT---------------------------   61 (242)
T ss_dssp             HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHTCCB---------------------------
T ss_pred             HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHhcch---------------------------
Confidence            34567888776543333   355557788899999999999999877654311                           


Q ss_pred             HhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----CC-------------chh-HHHHHHHHHHHhcCCHHHHHHHH
Q psy12000         96 LEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD----HK-------------DLL-ALNVYGAMCYYKLDYYDVSQEQV  157 (507)
Q Consensus        96 l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p-------------~~~-~~~~~la~~~~~~g~~~~A~~~~  157 (507)
                          ....+..+.+|.+.++|.+|+...+.++..    +|             .+. -.+..+|.+.-..|+.++|+.++
T Consensus        62 ----~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~  137 (242)
T 3kae_A           62 ----CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY  137 (242)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence                011345567899999999999999999942    22             222 34566899999999999999999


Q ss_pred             HHHHhcCCCcHHHHHH
Q psy12000        158 AMYLAQKPTSRIALNL  173 (507)
Q Consensus       158 ~~~l~~~p~~~~a~~~  173 (507)
                      .......|-.+..-++
T Consensus       138 ~~Sf~~~~lf~~vEnl  153 (242)
T 3kae_A          138 VRSFGKSFLFSPVENL  153 (242)
T ss_dssp             HHHHHHCCCHHHHHHH
T ss_pred             hhhcCCccccchHHHH
Confidence            9998888877665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.73  E-value=0.55  Score=49.98  Aligned_cols=145  Identities=12%  Similarity=0.031  Sum_probs=81.5

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      +...+...|.++.|+...+        ++...   .......|++++|.+.++...+                       
T Consensus       635 ~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~~~~-----------------------  680 (814)
T 3mkq_A          635 IARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTDESA-----------------------  680 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTTCCC-----------------------
T ss_pred             HHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHhhCc-----------------------
Confidence            4445556677777765542        22222   3345678999999888765421                       


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000         92 YHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus        92 ~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                              +..+-.+|..+.+.|+++.|+.+|.++-  +      +-.+..++...|+.+...+..+.+.. ..+...|.
T Consensus       681 --------~~~W~~la~~al~~~~~~~A~~~y~~~~--d------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~  743 (814)
T 3mkq_A          681 --------EMKWRALGDASLQRFNFKLAIEAFTNAH--D------LESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAF  743 (814)
T ss_dssp             --------HHHHHHHHHHHHHTTCHHHHHHHHHHHT--C------HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             --------HhHHHHHHHHHHHcCCHHHHHHHHHHcc--C------hhhhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHH
Confidence                    1124567788888888888888888752  1      11233344445555544333322222 22222111


Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCC
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSV  237 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~  237 (507)
                          .++++.|++++|++                          +|.+.+++++|+.+.++..+..
T Consensus       744 ----~~~~~~g~~~~a~~--------------------------~~~~~~~~~~A~~lA~~~~~~~  779 (814)
T 3mkq_A          744 ----NAYWIAGDIQGAKD--------------------------LLIKSQRFSEAAFLGSTYGLGD  779 (814)
T ss_dssp             ----HHHHHHTCHHHHHH--------------------------HHHHTTCHHHHHHHHHHTTCCH
T ss_pred             ----HHHHHcCCHHHHHH--------------------------HHHHcCChHHHHHHHHHhCCCh
Confidence                12334566666654                          4556778888888888776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.60  E-value=0.25  Score=51.62  Aligned_cols=56  Identities=14%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                      ..+..+..+|+|+-|+.+-++++...|+....|+.|+.||..+|+|+.|+-.++.+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34666778999999999999999999999999999999999999999999998887

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.30  E-value=5.4  Score=40.79  Aligned_cols=58  Identities=12%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      +++....+.|+++.|...|+.+.......+.+.|++|.++..+|+.++|...|+++..
T Consensus       290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4455556789999999999887654445567889999999999999999999999865

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.54  E-value=1.7  Score=36.35  Aligned_cols=48  Identities=13%  Similarity=0.026  Sum_probs=39.1

Q ss_pred             HHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        290 SFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       290 ~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                      .....|+++.|.++.+.+     +++..+-.||.....+|+++-|+.+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            345689999999987665     344566779999999999999999999874

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.51  E-value=5.5  Score=38.13  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=46.5

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12000        105 CLASIHFLRCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQEQVAMYLA  162 (507)
Q Consensus       105 ~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  162 (507)
                      .+|.+|+..|+|.+|.+++.+++.....      -.+++..-..+|..++++.++...+.++..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~  167 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART  167 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            6899999999999999999998875321      245666777888899999999888887753

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.72  E-value=0.31  Score=43.56  Aligned_cols=62  Identities=10%  Similarity=-0.007  Sum_probs=57.8

Q ss_pred             HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      ...+.|..++|++....-++.+|.+.+.+..+-..++-.|+|+.|.+.++.+.+++|+....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            45677999999999999999999999999999999999999999999999999999998764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.04  E-value=0.23  Score=51.86  Aligned_cols=56  Identities=23%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP   68 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~   68 (507)
                      +..+...|+|+-|+++-++++...|..-..|+.++.||+.+|+|+.|+-.+.-+|-
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            56667789999999999999999999999999999999999999999999988873

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.07  E-value=18  Score=36.89  Aligned_cols=88  Identities=8%  Similarity=-0.028  Sum_probs=51.4

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchh
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAK  365 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  365 (507)
                      .+|.-....+...++...+........++...-. ++....+.|+++.|..+|.++.... .....+.-|+|+++...|+
T Consensus       257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~  334 (618)
T 1qsa_A          257 IVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGR  334 (618)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCC
Confidence            3455555556455666666665443333333333 4334456799999999999875432 1222333467777777777


Q ss_pred             hhHHHHHHHH
Q psy12000        366 TRLSFHLSHK  375 (507)
Q Consensus       366 ~~~A~~~~~~  375 (507)
                      ...|-.++.+
T Consensus       335 ~~~a~~~~~~  344 (618)
T 1qsa_A          335 EAEAKEILHQ  344 (618)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.61  E-value=1  Score=40.28  Aligned_cols=55  Identities=15%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             HHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCC
Q psy12000         14 YCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPP   68 (507)
Q Consensus        14 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~   68 (507)
                      ...+..|+.++|++.....++.+|.+.+....+.+.+.-.|+++.|..-++.+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999987765543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.45  E-value=3  Score=44.93  Aligned_cols=92  Identities=9%  Similarity=-0.085  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHHHHHHHh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILL-----DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA--QKPTSRIALNLKA  175 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~~a  175 (507)
                      +..+-..+.+.|+.++|.++|.++-.     ..|+ ...|..+-..+.+.|+.++|.++|+++..  ..|+.. .|+.+.
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv-TYntLI  207 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL-SYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-HHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHH
Confidence            56788899999999999999977543     2354 44566677889999999999999999875  457654 455554


Q ss_pred             hhhhhccCh-HHHHHhhHHHHH
Q psy12000        176 CNTYKLFTS-RAAENQLKPILV  196 (507)
Q Consensus       176 ~~~~~~~~~-~~A~~~l~~~~~  196 (507)
                      ..+.+.|+. +.|...|+.+..
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHH
Confidence            556777774 678888888754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.40  E-value=0.84  Score=49.04  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=26.2

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHH-HHHHHHHhhCC-HHHHHHHHHhhcc
Q psy12000        286 CMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNF-NFAQAKCALGQ-YKEAEEMFLLVQN  343 (507)
Q Consensus       286 ~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~-~~~A~~~~~~~~~  343 (507)
                      .|...|.+.|+.++|+++|+.+....-.++.+.| .+-.++.+.|+ .++|.+.|+++..
T Consensus       170 tLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3445555555555555555555433322221222 23344555554 2445555555543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=88.97  E-value=1.8  Score=43.01  Aligned_cols=69  Identities=13%  Similarity=-0.159  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIAL  171 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~  171 (507)
                      +..||.+..-...+..|..+|.+++...|++...++.||.+....|+.-+|+-+|-+.+....-.+.+.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~  223 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHH
Confidence            567999999999999999999999999999999999999999999999999999988886544455543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.93  E-value=1.2  Score=42.88  Aligned_cols=59  Identities=12%  Similarity=-0.020  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYL  161 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  161 (507)
                      ...++..+...|++++|+....+++..+|-+..++..+-.+++..|+..+|++.|+++-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34577788889999999999999999999999999999999999999999999988863

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.88  E-value=1.2  Score=43.45  Aligned_cols=58  Identities=21%  Similarity=0.095  Sum_probs=34.0

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNP---PEDTEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      ...+|..|+..||+++|.+.|.++......   ..+.+....+++...+++..+...+.++
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344666666666666666666666543222   2255566666666666666666665554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.73  E-value=7.7  Score=30.71  Aligned_cols=51  Identities=10%  Similarity=-0.031  Sum_probs=41.3

Q ss_pred             HhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhc
Q psy12000        406 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQ  456 (507)
Q Consensus       406 ~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~  456 (507)
                      +|+-++--+.+..++..+|-++.+.+.+|.+|.++|+..+|.+.++++-+.
T Consensus       104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            466666667777777777777889999999999999999999999998765

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=88.67  E-value=0.0014  Score=63.54  Aligned_cols=219  Identities=13%  Similarity=0.070  Sum_probs=131.5

Q ss_pred             hhHhHHHHHHHHHhhccHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhh
Q psy12000        206 IPESRLNLVIYHLKQEEHQEAFDLIKNL-EPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGR  284 (507)
Q Consensus       206 ~~~~~~~l~~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  284 (507)
                      .|++|..||.++++.++..+|++.+.+. +|++-...+..   .       ...+.++.-+.+++.......++. +.  
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~---A-------~~~~~~edLv~yL~MaRk~~ke~~-ID--  119 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA---A-------NTSGNWEELVKYLQMARKKARESY-VE--  119 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHH---T-------TTSSCCTTHHHHHHTTSTTCCSTT-TT--
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHH---H-------HhCCCHHHHHHHHHHHHHHhcccc-cH--
Confidence            4678999999999999999999988665 34433322111   0       112233445555554433222211 11  


Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccch
Q psy12000        285 QCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRA  364 (507)
Q Consensus       285 ~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  364 (507)
                      ..|..+|.+.++..+=.+++     ..|+...+ -..|.=++..|.|+.|.-.|..+-+-         +.|+.|+++.+
T Consensus       120 teLi~ayAk~~rL~elEefl-----~~~N~A~i-q~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~  184 (624)
T 3lvg_A          120 TELIFALAKTNRLAELEEFI-----NGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLG  184 (624)
T ss_dssp             HHHHHHHHTSCSSSTTTSTT-----SCCSSSCT-HHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCS
T ss_pred             HHHHHHHHhhCcHHHHHHHH-----cCCCcccH-HHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHH
Confidence            14778888888865433221     23554433 44899999999999999988876332         23788999999


Q ss_pred             hhhHHHHHHHHcCCcH---HHHHHHHHhhhcHHHH-H------------HHHHHHHhHhhHHHHHHHHHHHhhcCCchhh
Q psy12000        365 KTRLSFHLSHKLGDEK---SLMEYHQKLEDSLEEQ-L------------CLASIHFLRCHYQEAIDIYKRILLDHKDLLA  428 (507)
Q Consensus       365 ~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~-~------------~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~  428 (507)
                      +++.|.+.+.|.....   +.....-...+.--.+ +            .+...|..+|.|++=|..++.++....-...
T Consensus       185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG  264 (624)
T 3lvg_A          185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG  264 (624)
T ss_dssp             GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence            9999988777765432   1111110000000000 0            0111223458899999999999877766777


Q ss_pred             hHHHHHhhccccccchhHHHHHHHH
Q psy12000        429 LNVYGAMCYYKLDYYDVSQEQVAMY  453 (507)
Q Consensus       429 ~~~~la~~y~~~g~~~~A~~~~~~~  453 (507)
                      ....||.+|.|= +.++-++.++.+
T Consensus       265 mFTELaILYsKY-~PeKlmEHlklf  288 (624)
T 3lvg_A          265 MFTELAILYSKF-KPQKMREHLELF  288 (624)
T ss_dssp             HHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            777888877765 456666555543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.54  E-value=0.78  Score=44.20  Aligned_cols=56  Identities=13%  Similarity=0.047  Sum_probs=51.8

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhC
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV   66 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~   66 (507)
                      .++..+...|++.+|+..+..++..+|.+..++..+..+++..|+..+|+..|+++
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999998764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.25  E-value=20  Score=34.93  Aligned_cols=193  Identities=11%  Similarity=0.048  Sum_probs=106.7

Q ss_pred             hhcHHHHHHHHHHHHHhC------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--hhh-hh-hcc
Q psy12000        113 RCHYQEAIDIYKRILLDH------KDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK--ACN-TY-KLF  182 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~--a~~-~~-~~~  182 (507)
                      .|++++|++.+..+.+..      +....+...+..++...|+|+...+++..+.+.......+....  -++ +. ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            477888888775554432      33456677788888889999888887776665554444332111  010 01 011


Q ss_pred             ChHHHHHhhHHHHHhhCCCC--CCC-----hhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhcc
Q psy12000        183 TSRAAENQLKPILVSILPPL--IDV-----IPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDT  255 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~  255 (507)
                      +.+...  ....+. .+...  ...     .......|+.+|...|++.+|.+.+..+...             ..|   
T Consensus       109 ~~d~~~--~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E-------------t~~---  169 (445)
T 4b4t_P          109 SLDLNT--RISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE-------------TYG---  169 (445)
T ss_dssp             TTHHHH--HHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------HCS---
T ss_pred             chhHHH--HHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-------------HHh---
Confidence            111100  001111 00000  011     1234467899999999999999988765100             000   


Q ss_pred             CcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhh-h--cCCCc----hHHHHHHHHHHhh
Q psy12000        256 GSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKS-Y--YTSDD----SFNFNFAQAKCAL  328 (507)
Q Consensus       256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~-~--~~~~~----~~~~~lg~~~~~~  328 (507)
                       ....-.+.+-                 .......+...+++.+|..+++++.. .  .+.++    .+....|..+...
T Consensus       170 -~~~~~~kve~-----------------~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e  231 (445)
T 4b4t_P          170 -SMEMSEKIQF-----------------ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK  231 (445)
T ss_dssp             -SSCHHHHHHH-----------------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh
Confidence             0000011110                 11235667788899999888887642 1  12222    3344568888889


Q ss_pred             CCHHHHHHHHHhhc
Q psy12000        329 GQYKEAEEMFLLVQ  342 (507)
Q Consensus       329 g~~~~A~~~~~~~~  342 (507)
                      ++|.+|-.+|..+.
T Consensus       232 ~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          232 REYLEVAQYLQEIY  245 (445)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999998875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.94  E-value=2.9  Score=40.81  Aligned_cols=91  Identities=8%  Similarity=-0.118  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCC---chhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHH----HH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHK---DLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQK--PTSRIAL----NL  173 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~----~~  173 (507)
                      ...+|..|+..|++++|.++|.++.....   .-.+++..+..+++..++|..+...++++....  ..++...    ..
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            67899999999999999999999887653   346788888899999999999999999985431  1122111    11


Q ss_pred             HhhhhhhccChHHHHHhhHH
Q psy12000        174 KACNTYKLFTSRAAENQLKP  193 (507)
Q Consensus       174 ~a~~~~~~~~~~~A~~~l~~  193 (507)
                      .|.+++..++|..|...|-.
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e  233 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVD  233 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHHHHH
Confidence            23344455566665554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.98  E-value=2.1  Score=47.65  Aligned_cols=123  Identities=9%  Similarity=-0.123  Sum_probs=74.7

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-----------------
Q psy12000        106 LASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLA---QKP-----------------  165 (507)
Q Consensus       106 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p-----------------  165 (507)
                      +.......|.++-|.+    .+...|.++...+.+|.++...|++++|.++|+++-.   .+.                 
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4444556666665543    5567788888889999999999999999999988631   100                 


Q ss_pred             -Cc-HHHHHH-HhhhhhhccChHHHHHhhHHHHHhhCCCCCCC-hhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        166 -TS-RIALNL-KACNTYKLFTSRAAENQLKPILVSILPPLIDV-IPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       166 -~~-~~a~~~-~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                       .. ...++. ...+..+.+.++.+...-..+++ .....++. ....|.++-..++..|+|++|...+...
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~-~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence             00 011222 23343444555555543333332 22111111 2235677778899999999998888654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.29  E-value=1.9  Score=42.22  Aligned_cols=102  Identities=20%  Similarity=0.083  Sum_probs=70.7

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcC-CC-C----ChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhc
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHL-PN-P----PEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKL   83 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~-~p-~----~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~   83 (507)
                      ..++..+...|++.+|...++.+... .. .    ..+++....+++...+++..|...++++.......         .
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---------~  211 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN---------P  211 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---------S
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---------C
Confidence            45899999999999999999988642 11 1    13677888999999999999998887752100000         0


Q ss_pred             CChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy12000         84 GDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDH  130 (507)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  130 (507)
                       ....+.         ..-+...|.++...++|.+|-.+|.+++...
T Consensus       212 -~~~~lk---------~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          212 -KYESLK---------LEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             -CCHHHH---------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             -CcHHHH---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence             000000         0014567889999999999999999987643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.84  E-value=22  Score=32.95  Aligned_cols=42  Identities=17%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        298 KDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       298 ~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                      ++|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|-
T Consensus       119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            344444433222223467888889999999999999999994

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=84.59  E-value=0.00088  Score=64.92  Aligned_cols=145  Identities=12%  Similarity=0.004  Sum_probs=78.3

Q ss_pred             CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHH
Q psy12000         38 PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQ  117 (507)
Q Consensus        38 ~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~  117 (507)
                      +.+++|..+|..+...|...+|++.|-++.+..... -....+.                              ..|.|+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~-eVi~~A~------------------------------~~~~~e  100 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYM-EVVQAAN------------------------------TSGNWE  100 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSS-HHHHHTT------------------------------TSSCCT
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHH-HHHHHHH------------------------------hCCCHH
Confidence            456899999999999999999999888875532211 1122222                              233444


Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHh
Q psy12000        118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS  197 (507)
Q Consensus       118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~  197 (507)
                      +=+.+++.+-+. -..+.+-..|..||.++|+..+-.+.+     ..|+... ....|.-.+..|.++.|.-.|..+   
T Consensus       101 dLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i---  170 (624)
T 3lvg_A          101 ELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV---  170 (624)
T ss_dssp             THHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS---
T ss_pred             HHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC---
Confidence            444443333222 222233344566777777655433322     1233322 122333445556666665444332   


Q ss_pred             hCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        198 ILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                                ..+..|+..+...|+|+.|++..++.
T Consensus       171 ----------sN~akLAstLV~L~~yq~AVdaArKA  196 (624)
T 3lvg_A          171 ----------SNFGRLASTLVHLGEYQAAVDGARKA  196 (624)
T ss_dssp             ----------CCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred             ----------ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      12345566667777777777766654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.49  E-value=7.4  Score=43.24  Aligned_cols=139  Identities=13%  Similarity=0.023  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      ++.......+.++-|...    +.-.|.++...+.+|+++...|++++|..+|+++...-......      ........
T Consensus       817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l------~~~~~~~~  886 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ------FAVLREFQ  886 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS------CSSHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh------hhhhcccc
Confidence            455566677777665543    23346666667999999999999999999999985321110000      00000000


Q ss_pred             HHHHHHh---hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC-chh----HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12000         91 EYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK-DLL----ALNVYGAMCYYKLDYYDVSQEQVAM  159 (507)
Q Consensus        91 ~~~~~l~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~----~~~~~la~~~~~~g~~~~A~~~~~~  159 (507)
                      .......   ..+.-++.+..++.+.|-++.+++.-+.+|+..+ +..    ..+.++=..+..+|+|++|...+..
T Consensus       887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            0000000   0011145667788888999999998888887653 222    2456666778888888888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 9/177 (5%)

Query: 12  LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---PP 68
           LG        + +A+  Y     L         N+A  Y+  G+   A     +     P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 69  SRAKTRLSF-HLSHKLGDEKSLMEYHQKL----EDSLEEQLCLASIHFLRCHYQEAIDIY 123
                  +  +   + G      + +           +    LA+I   + + +EA+ +Y
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328

Query: 124 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 180
           ++ L    +  A +   A    +      +       +   PT   A +    NT K
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 384

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 36/373 (9%), Positives = 80/373 (21%), Gaps = 61/373 (16%)

Query: 12  LGYCHFHLGQYKQALGIYET-LRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKV---- 66
           L +  +  G ++ A        R  P+        ++S +F      ++           
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTG-VLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 67  --------------------------------------PPSRAKTRLSFHLSHKLGDEKS 88
                                                                  G  ++
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 89  LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLD 148
            +   Q   D    +  L ++       +EA   Y + +    +           +    
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 149 YYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE 208
              ++       +   P    A         +      A              L      
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-----LSLSPNHAV 238

Query: 209 SRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQ 265
              NL   + +Q     A D  +    L+P  P  Y   A      G    + +    A 
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA- 297

Query: 266 ALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAK 325
                    +           +A+      + ++ +         +    + + N A   
Sbjct: 298 --------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 326 CALGQYKEAEEMF 338
              G+ +EA   +
Sbjct: 350 QQQGKLQEALMHY 362

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 48/401 (11%), Positives = 104/401 (25%), Gaps = 28/401 (6%)

Query: 78  HLSHKLGD-EKSLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRIL-LDHKD 132
           H  ++ GD E +     Q      D+    L L+SIHF       +       +  +   
Sbjct: 7   HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

Query: 133 LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLK 192
             A +  G +   +    +  +        +       +NL A          A +  + 
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 193 PILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIG 252
            +  +     +     + L  +    + +         +   P+    +     V    G
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQG 183

Query: 253 QDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYT 312
           +   +    + A  L           + +     + +     R F   +       S   
Sbjct: 184 EIWLAIHHFEKAVTLDP---------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 313 SDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHL 372
           +    + N A      G    A + +             Y +                  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN----------LANALKEK 284

Query: 373 SHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVY 432
                 E       +      +    LA+I   + + +EA+ +Y++ L    +  A +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 433 GAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK 473
            A    +      +       +   PT   A +    NT K
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG-NTLK 384

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 8/144 (5%)

Query: 12  LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQA----NQILEKVP 67
           L   ++  G    A+  Y     L     D   N+A+     G   +A    N  L   P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 68  PSRAKTRLSFHLSHKLGDEKSLMEYHQKL----EDSLEEQLCLASIHFLRCHYQEAIDIY 123
                     ++  + G+ +  +  ++K      +       LAS+   +   QEA+  Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Query: 124 KRILLDHKDLLALNVYGAMCYYKL 147
           K  +                  ++
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEM 386

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.75
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.44
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.29
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.27
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.27
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.07
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.06
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.94
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.9
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.76
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.67
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.53
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.25
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.01
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.75
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.46
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.71

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=286.01  Aligned_cols=383  Identities=14%  Similarity=0.005  Sum_probs=315.8

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      +.+|..++..|+|++|++.|+++++.+|+++++++.+|.++..+|++++|+..++++....+.                 
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----------------   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-----------------   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Confidence            568999999999999999999999999999999999999999999999999999887432221                 


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRI  169 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  169 (507)
                               .++.+..+|.++..+|++++|+..+.+++..+|.........+......+....+...........+....
T Consensus        66 ---------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (388)
T d1w3ba_          66 ---------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC  136 (388)
T ss_dssp             ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred             ---------CHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                     12336789999999999999999999999999999999999999999999999999999888888888877


Q ss_pred             HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh---cCCCChHHHHHHHH
Q psy12000        170 ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN---LEPSVPQEYILKAV  246 (507)
Q Consensus       170 a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~---~~~~~~~~~~~~~~  246 (507)
                      ............+....+...+.....     ..|..+.++..+|..+...|++++|...+.+   +.|.++..+...|.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  211 (388)
T d1w3ba_         137 VRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN  211 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHhhc-----cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhh
Confidence            766666666666677777666665432     2355677889999999999999999988865   47788877777788


Q ss_pred             HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q psy12000        247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKC  326 (507)
Q Consensus       247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~  326 (507)
                      ++...|+...+...++++...         .+.....+..+|.++...|++++|+.+++++.+..|+++.+++++|.++.
T Consensus       212 ~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         212 VLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             hhhccccHHHHHHHHHHhHHH---------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            877777665444444443321         12223345568999999999999999999999999998888899999999


Q ss_pred             hhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhH
Q psy12000        327 ALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLR  406 (507)
Q Consensus       327 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  406 (507)
                      .+|++++|++.|+++....+.....+                                            ..++.++...
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~  318 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTHADSL--------------------------------------------NNLANIKREQ  318 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHhhhccCCccchhh--------------------------------------------hHHHHHHHHC
Confidence            99999999999998865443322111                                            2234566777


Q ss_pred             hhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        407 CHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      |++++|+..|+++++.+|+++.+++.+|.+|.++|++++|++.|+++++++|+++.++..+|.++.++++
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-31  Score=257.09  Aligned_cols=335  Identities=13%  Similarity=-0.057  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|++.+..+...+|................+
T Consensus        36 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (388)
T d1w3ba_          36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG  115 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccc
Confidence            44566666666666666666666666666666666666666666666666666666666666666554443333333333


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                      ....+.........     ............+......+....+...+.+.   .|.++..+...+..+...|....+..
T Consensus       116 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  190 (388)
T d1w3ba_         116 DMEGAVQAYVSALQ-----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH  190 (388)
T ss_dssp             CSSHHHHHHHHHHH-----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             cccccccccccccc-----cccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHH
Confidence            33332222222110     01111223333344444444444444433321   33333333333333333333322222


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFL  339 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  339 (507)
                      .++++++.         .|+...++..+|.++...|++++|+..++++....|.....++.+|.++...|++++|+..|+
T Consensus       191 ~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         191 HFEKAVTL---------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             HHHHHHHH---------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHh---------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            22222211         122233334455555555555555555555554444444444445555555555555555555


Q ss_pred             hhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q psy12000        340 LVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI  419 (507)
Q Consensus       340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~  419 (507)
                      +++..+|.+.                                            +....++.++...|++++|+..|+++
T Consensus       262 ~al~~~p~~~--------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~  297 (388)
T d1w3ba_         262 RAIELQPHFP--------------------------------------------DAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             HHHHTCSSCH--------------------------------------------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHhCCCCH--------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            5443332211                                            12234556777789999999999999


Q ss_pred             hhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCCc
Q psy12000        420 LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPRV  495 (507)
Q Consensus       420 l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (507)
                      +...|........+|.+|.++|++++|++.++++++++|+++.++..+|.+++.+++.+.|+..|++.++.+|.+.
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=207.36  Aligned_cols=254  Identities=11%  Similarity=0.060  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      .+..|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|++..++..         
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------   92 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA---------   92 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc---------
Confidence            56789999999999999999999999999999999999999999999999999999999999988765444         


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSRE  259 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  259 (507)
                                                    +|.+|...|++++|+..+.+.   .|..............          
T Consensus        93 ------------------------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------  132 (323)
T d1fcha_          93 ------------------------------LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG----------  132 (323)
T ss_dssp             ------------------------------HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------
T ss_pred             ------------------------------ccccccccccccccccchhhHHHhccchHHHHHhhhhhhh----------
Confidence                                          444555555555555555432   2222111000000000          


Q ss_pred             HHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC--chHHHHHHHHHHhhCCHHHHHHH
Q psy12000        260 MVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD--DSFNFNFAQAKCALGQYKEAEEM  337 (507)
Q Consensus       260 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~  337 (507)
                        ..                .+.........+...+.+.+|+..+.++...+|+.  +.++..+|.++..+|++++|+..
T Consensus       133 --~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  194 (323)
T d1fcha_         133 --GA----------------GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC  194 (323)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --hc----------------ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcc
Confidence              00                00000011234456678889999999988888764  35677899999999999999999


Q ss_pred             HHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy12000        338 FLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYK  417 (507)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~  417 (507)
                      |++++...|.+...+                                            ..+|.++...|++++|+..|+
T Consensus       195 ~~~al~~~p~~~~~~--------------------------------------------~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         195 FTAALSVRPNDYLLW--------------------------------------------NKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HHHHHHHCTTCHHHH--------------------------------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccch--------------------------------------------hhhhhcccccccchhHHHHHH
Confidence            999875544322111                                            234557777899999999999


Q ss_pred             HHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        418 RILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       418 ~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      ++++.+|+++.+++.+|.+|.++|++++|+..|+++++++|+++.+....
T Consensus       231 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  280 (323)
T d1fcha_         231 RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  280 (323)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             HHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence            99999999999999999999999999999999999999999988765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-23  Score=198.75  Aligned_cols=225  Identities=12%  Similarity=-0.034  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|++.+++++..+|+.............   
T Consensus        56 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---  132 (323)
T d1fcha_          56 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG---  132 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred             HHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhh---
Confidence            45566677777888888888888899999999999999999999999999999999999999987642110000000   


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVK  262 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  262 (507)
                        ..                   ...........+...+.+++|...+.+                              
T Consensus       133 --~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~------------------------------  161 (323)
T d1fcha_         133 --GA-------------------GLGPSKRILGSLLSDSLFLEVKELFLA------------------------------  161 (323)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred             --hc-------------------ccccchhhHHHHHHhhHHHHHHHHHHH------------------------------
Confidence              00                   000000111122233344444433322                              


Q ss_pred             HHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhc
Q psy12000        263 AAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQ  342 (507)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~  342 (507)
                       ++..      .+ ......++..+|.++...|++++|+.+++++....|++..+++++|.+|..+|++++|+..|++++
T Consensus       162 -al~~------~p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         162 -AVRL------DP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             -HHHH------ST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHH------hh-cccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHH
Confidence             1110      00 011122344689999999999999999999999999998899999999999999999999999987


Q ss_pred             ccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhc
Q psy12000        343 NEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD  422 (507)
Q Consensus       343 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~  422 (507)
                      ..+|.+...                                            ...+|.++...|++++|+..|+++++.
T Consensus       234 ~~~p~~~~a--------------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         234 ELQPGYIRS--------------------------------------------RYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHCTTCHHH--------------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhccHHH--------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            655432211                                            133556778889999999999999999


Q ss_pred             CCchhhhHHHH
Q psy12000        423 HKDLLALNVYG  433 (507)
Q Consensus       423 ~p~~~~~~~~l  433 (507)
                      +|++......+
T Consensus       270 ~p~~~~~~~~~  280 (323)
T d1fcha_         270 QRKSRGPRGEG  280 (323)
T ss_dssp             HHTC------C
T ss_pred             CCcChhhhhhh
Confidence            99887654443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.9e-20  Score=178.95  Aligned_cols=273  Identities=8%  Similarity=-0.097  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHH
Q psy12000         22 YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLE  101 (507)
Q Consensus        22 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (507)
                      .++|+.+++++++.+|++.++|...+.++..++.                                              
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~----------------------------------------------   78 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLET----------------------------------------------   78 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhh----------------------------------------------
Confidence            4899999999999999999999888776533322                                              


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCcHHHHHHHhhhhh
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY--YDVSQEQVAMYLAQKPTSRIALNLKACNTY  179 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~  179 (507)
                          .+..+...|++++|+.+|++++..+|++..+++.+|.++...++  +++|+..+++++..+|.+..++.       
T Consensus        79 ----~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~-------  147 (334)
T d1dcea1          79 ----EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWD-------  147 (334)
T ss_dssp             ----TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred             ----hcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhh-------
Confidence                23345677889999999999999999999999999999888775  89999999999999998775432       


Q ss_pred             hccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHhhhccC
Q psy12000        180 KLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTIGQDTG  256 (507)
Q Consensus       180 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~g~~~~  256 (507)
                                                     ...|.++...+++++|+..+++..   |.++..+               
T Consensus       148 -------------------------------~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~---------------  181 (334)
T d1dcea1         148 -------------------------------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW---------------  181 (334)
T ss_dssp             -------------------------------HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH---------------
T ss_pred             -------------------------------hHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHH---------------
Confidence                                           123334444555555555554432   2222222               


Q ss_pred             cHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHH
Q psy12000        257 SREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEE  336 (507)
Q Consensus       257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  336 (507)
                                                  ..+|.++...|++++|+..++++....|...    .....+...+..++|..
T Consensus       182 ----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~a~~  229 (334)
T d1dcea1         182 ----------------------------HYRSCLLPQLHPQPDSGPQGRLPENVLLKEL----ELVQNAFFTDPNDQSAW  229 (334)
T ss_dssp             ----------------------------HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH----HHHHHHHHHCSSCSHHH
T ss_pred             ----------------------------HHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH----HHHHHHHHhcchhHHHH
Confidence                                        2234444444444444443333333332221    12223344556666777


Q ss_pred             HHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHH
Q psy12000        337 MFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY  416 (507)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~  416 (507)
                      .|.+++...+.....+                                            ..++.++...+++.+|+..+
T Consensus       230 ~~~~~l~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~a~~~~  265 (334)
T d1dcea1         230 FYHRWLLGRAEPLFRC--------------------------------------------ELSVEKSTVLQSELESCKEL  265 (334)
T ss_dssp             HHHHHHHSCCCCSSSC--------------------------------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcchhhHH--------------------------------------------HHHHHHHHHHhhHHHHHHHH
Confidence            7776654433221111                                            00122344457899999999


Q ss_pred             HHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhh
Q psy12000        417 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  473 (507)
Q Consensus       417 ~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~  473 (507)
                      .++++.+|++..++..+|.+|..+|++++|++.|+++++++|+++..++.++..+..
T Consensus       266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999998877666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.6e-18  Score=160.42  Aligned_cols=199  Identities=8%  Similarity=-0.049  Sum_probs=162.8

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcc-HHHHHHHHHhCCCCccccchHHHHHHhcCCh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGM-YLQANQILEKVPPSRAKTRLSFHLSHKLGDE   86 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      +...+|.++...+.+++|+..++++++++|++..+|+++|.++..+|+ +++|+..++++....+..             
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~-------------  111 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-------------  111 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-------------
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-------------
Confidence            334678999999999999999999999999999999999999999875 999999998875433222             


Q ss_pred             hHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000         87 KSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus        87 ~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                                   ...+..+|.++...|++++|++.|++++..+|++..++.++|.++..+|++++|++.++++++.+|.
T Consensus       112 -------------~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         112 -------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             -------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             -------------hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence                         2336788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccC------hHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhc--cHHHHHHHHHhcCCCC
Q psy12000        167 SRIALNLKACNTYKLFT------SRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQE--EHQEAFDLIKNLEPSV  237 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~------~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~l~~~~~~~  237 (507)
                      +..+++.++.++...+.      +++|+..+.++++     ..|..+.++.+++.++...|  +..+++..+.++.|..
T Consensus       179 n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~-----~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         179 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-----LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH-----hCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCc
Confidence            99999988888776654      4567776766542     45667788999998876543  3333344444455543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.2e-18  Score=159.50  Aligned_cols=218  Identities=6%  Similarity=-0.048  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-YDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      +..+|.++.+++++++|+++|+++|+.+|++..+++++|.++..+|+ +++|+..+++++..+|++..+++.        
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~--------  117 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH--------  117 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH--------
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH--------
Confidence            55788999999999999999999999999999999999999998874 899999999999999987754332        


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMV  261 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  261 (507)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (315)
T d2h6fa1         118 --------------------------------------------------------------------------------  117 (315)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhh
Q psy12000        262 KAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLV  341 (507)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  341 (507)
                                               +|.++..+|++++|+++++++.+.+|++..+++++|.++...|++++|++.|+++
T Consensus       118 -------------------------~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         118 -------------------------RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             -------------------------HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -------------------------HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                                     2334444455555666666666666666556666666666666666666666666


Q ss_pred             cccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhh
Q psy12000        342 QNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILL  421 (507)
Q Consensus       342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~  421 (507)
                      +..+|.+...|.. ++.             ++.+++.                        +...+.+++|+..++++++
T Consensus       173 l~~~p~n~~a~~~-r~~-------------~l~~~~~------------------------~~~~~~~~~ai~~~~~al~  214 (315)
T d2h6fa1         173 LKEDVRNNSVWNQ-RYF-------------VISNTTG------------------------YNDRAVLEREVQYTLEMIK  214 (315)
T ss_dssp             HHHCTTCHHHHHH-HHH-------------HHHHTTC------------------------SCSHHHHHHHHHHHHHHHH
T ss_pred             HHHCCccHHHHHH-HHH-------------HHHHccc------------------------cchhhhhHHhHHHHHHHHH
Confidence            5554443322210 000             0000000                        0012567889999999999


Q ss_pred             cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCch--hhhhHHHhhhh
Q psy12000        422 DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR--IALNLKACNTY  472 (507)
Q Consensus       422 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~--~a~~~~~~~~~  472 (507)
                      .+|++..++.++|.++...| .+++.+.++.++++.|++.  .++..++.++.
T Consensus       215 ~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            99999998888888876655 6888899999988888754  34444554443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.4e-18  Score=164.11  Aligned_cols=256  Identities=12%  Similarity=-0.014  Sum_probs=195.7

Q ss_pred             HhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        112 LRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----------LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       112 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      ..+..++|++++++++..+|++.+++...+.+...          .|++++|+..++++++.+|++..++..++.++...
T Consensus        41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence            33445899999999999999999988777666544          34578899999999999998887665544443322


Q ss_pred             cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc---CCCChHHHHHHHHHHHHhhhccCcH
Q psy12000        182 FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL---EPSVPQEYILKAVVQVTIGQDTGSR  258 (507)
Q Consensus       182 ~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~g~~~~~~  258 (507)
                      +                                     .+++++|+..+.+.   +|.+...+                 
T Consensus       121 ~-------------------------------------~~~~~~a~~~~~~al~~~~~~~~~~-----------------  146 (334)
T d1dcea1         121 P-------------------------------------EPNWARELELCARFLEADERNFHCW-----------------  146 (334)
T ss_dssp             S-------------------------------------SCCHHHHHHHHHHHHHHCTTCHHHH-----------------
T ss_pred             c-------------------------------------cccHHHHHHHHHHHHhhCchhhhhh-----------------
Confidence            2                                     23345555544432   22221110                 


Q ss_pred             HHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHH
Q psy12000        259 EMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMF  338 (507)
Q Consensus       259 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  338 (507)
                                               ...+|.++...+++++|+.+++++...+|++..+++++|.++..+|++++|+..+
T Consensus       147 -------------------------~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         147 -------------------------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             -------------------------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             -------------------------hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                                     1235678888999999999999999999999999999999999999999887666


Q ss_pred             HhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy12000        339 LLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKR  418 (507)
Q Consensus       339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~  418 (507)
                      .+++...+..                                                ..........+.+++|+..|.+
T Consensus       202 ~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~a~~~~~~  233 (334)
T d1dcea1         202 RLPENVLLKE------------------------------------------------LELVQNAFFTDPNDQSAWFYHR  233 (334)
T ss_dssp             SSCHHHHHHH------------------------------------------------HHHHHHHHHHCSSCSHHHHHHH
T ss_pred             HHhHHhHHHH------------------------------------------------HHHHHHHHHhcchhHHHHHHHH
Confidence            6543321100                                                0000112223566789999999


Q ss_pred             HhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCChHHHHHHHHHHHHhCCCC
Q psy12000        419 ILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSAGPR  494 (507)
Q Consensus       419 ~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (507)
                      ++...|+.+..+..+|.++..+|++++|+..+.++++.+|+++.++..+|.++..++..+.|...|+++++.+|.|
T Consensus       234 ~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         234 WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             HHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            9999999988888889999999999999999999999999999999999999999999999999999999999976

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.1e-16  Score=152.71  Aligned_cols=279  Identities=12%  Similarity=0.023  Sum_probs=189.4

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPE-----DTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHK   82 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~   82 (507)
                      .....|.++...|++++|+..|+++++..|.+.     .++..+|.++...|++++|+..++++......          
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~----------   83 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------   83 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----------
Confidence            344569999999999999999999999999874     46788999999999999999999876421110          


Q ss_pred             cCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC--------chhHHHHHHHHHHHhcCCHHHHH
Q psy12000         83 LGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHK--------DLLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~  154 (507)
                      .+....          .......++.++...|++..|+..+.+++...+        ....++..+|.++...|+++.|.
T Consensus        84 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~  153 (366)
T d1hz4a_          84 HDVWHY----------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  153 (366)
T ss_dssp             TTCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcchHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence            000000          011256789999999999999999999987643        23356778999999999999999


Q ss_pred             HHHHHHHhcCCCcHH-----HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC---CChhHhHHHHHHHHHhhccHHHH
Q psy12000        155 EQVAMYLAQKPTSRI-----ALNLKACNTYKLFTSRAAENQLKPILVSILPPLI---DVIPESRLNLVIYHLKQEEHQEA  226 (507)
Q Consensus       155 ~~~~~~l~~~p~~~~-----a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A  226 (507)
                      ..+.+++...+....     +....+..+...+....+...+..... ......   +....++..++.++...|++++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  232 (366)
T d1hz4a_         154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN-LLGNGKYHSDWISNANKVRVIYWQMTGDKAAA  232 (366)
T ss_dssp             HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence            999999876654332     333344445555555555554444321 111111   11223344455555555666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHH
Q psy12000        227 FDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSS  306 (507)
Q Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~  306 (507)
                      ...+.+.....+.                                    ..+.....+..+|.++...|++++|+.++++
T Consensus       233 ~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  276 (366)
T d1hz4a_         233 ANWLRHTAKPEFA------------------------------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEE  276 (366)
T ss_dssp             HHHHHHSCCCCCT------------------------------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc------------------------------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555443222111                                    0011112234578999999999999999988


Q ss_pred             hhhh------cCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcc
Q psy12000        307 IKSY------YTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQN  343 (507)
Q Consensus       307 ~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~  343 (507)
                      +...      .|....++..+|.+|..+|++++|++.|++++.
T Consensus       277 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         277 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7633      233345678899999999999999999999864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.4e-17  Score=152.44  Aligned_cols=201  Identities=11%  Similarity=-0.042  Sum_probs=129.0

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      +.+.+|.+|...|++++|+..|+++++++|+++++|+.+|.++..+|++++|+..|+++....+..              
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------------  104 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------  104 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh--------------
Confidence            556678888888888888888888888888888888888888888888888888877764322211              


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12000         88 SLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTS  167 (507)
Q Consensus        88 ~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  167 (507)
                                  +..++.+|.++...|++++|++.|+++++.+|.+......++.++...+..+.+..........++..
T Consensus       105 ------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_         105 ------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             ------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             ------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence                        12256777888888888888888888888888777777777777777777666666655555555444


Q ss_pred             HHHHHHHhhh---hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHH
Q psy12000        168 RIALNLKACN---TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQE  240 (507)
Q Consensus       168 ~~a~~~~a~~---~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~  240 (507)
                      ... ......   ....+..+.+...+....     ...+..+++++++|.+|..+|++++|+..+++....+|..
T Consensus       173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         173 WGW-NIVEFYLGNISEQTLMERLKADATDNT-----SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             THH-HHHHHHTTSSCHHHHHHHHHHHCCSHH-----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             hhh-hHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            321 111000   001111222221111110     0123344678888888988999999988888765555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.3e-16  Score=145.92  Aligned_cols=133  Identities=11%  Similarity=0.040  Sum_probs=96.5

Q ss_pred             HhhcCHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         17 FHLGQYKQALGIYETLRHLPN----PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        17 ~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      ....+.+.|+..+++++...+    ..+.+++.+|.+|..+|++++|+..|+++....+.                    
T Consensus        10 ~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--------------------   69 (259)
T d1xnfa_          10 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--------------------   69 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------
T ss_pred             cccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--------------------
Confidence            344566777777888876543    23357778888888888888888888776432221                    


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                            .+..+..+|.++..+|++++|+..|++++..+|+++.+++++|.++..+|++++|++.++++++.+|++.....
T Consensus        70 ------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  143 (259)
T d1xnfa_          70 ------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  143 (259)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Confidence                  12336677888888888888888888888888888888888888888888888888888888888887766544


Q ss_pred             HHh
Q psy12000        173 LKA  175 (507)
Q Consensus       173 ~~a  175 (507)
                      ..+
T Consensus       144 ~~~  146 (259)
T d1xnfa_         144 WLY  146 (259)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7e-16  Score=146.90  Aligned_cols=282  Identities=9%  Similarity=-0.096  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH------HHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL-----LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR------IAL  171 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~a~  171 (507)
                      ....|.++...|++++|+.+|++++...|++     ..++..+|.++..+|++++|+..+++++...|...      .+.
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            4567999999999999999999999999875     35788899999999999999999999987544322      133


Q ss_pred             HHHhhhhhhccChHHHHHhhHHHHH---hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy12000        172 NLKACNTYKLFTSRAAENQLKPILV---SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQ  248 (507)
Q Consensus       172 ~~~a~~~~~~~~~~~A~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~  248 (507)
                      ..++.++...|++..+...+.....   .......+........+|.++...|++++|...+...               
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~---------------  159 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---------------  159 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH---------------
Confidence            4445555566666666665555432   1111111122234455566666666666665555332               


Q ss_pred             HHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCC-------chHHHHH
Q psy12000        249 VTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSD-------DSFNFNF  321 (507)
Q Consensus       249 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~-------~~~~~~l  321 (507)
                                      .....   . ........+...++..+...+++.++...+..+....+..       ..+...+
T Consensus       160 ----------------~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (366)
T d1hz4a_         160 ----------------IEVLS---S-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR  219 (366)
T ss_dssp             ----------------HHHTT---T-SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ----------------HHHhh---h-hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence                            11110   0 0011112223356777888889999988777665443221       2345567


Q ss_pred             HHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHH
Q psy12000        322 AQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLAS  401 (507)
Q Consensus       322 g~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  401 (507)
                      |.++...|++++|...+++++...+.+.....                                        .....++.
T Consensus       220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~la~  259 (366)
T d1hz4a_         220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ----------------------------------------GQWRNIAR  259 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH----------------------------------------HHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhccccchHHH----------------------------------------HHHHHHHH
Confidence            88999999999999999998765432211110                                        00122345


Q ss_pred             HHHhHhhHHHHHHHHHHHhh------cCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCC
Q psy12000        402 IHFLRCHYQEAIDIYKRILL------DHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  459 (507)
Q Consensus       402 ~~~~~~~~~~Ai~~~~~~l~------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~  459 (507)
                      ++...|++++|+..+++++.      ..|+...++..+|.+|.++|++++|++.+++++++.+.
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            66777899999999998873      45666778889999999999999999999999987543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-14  Score=112.62  Aligned_cols=56  Identities=21%  Similarity=0.110  Sum_probs=43.0

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEK   65 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~   65 (507)
                      ...|..++..|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..+++
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   62 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   62 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhh
Confidence            45788999999999999999999999999888887777766655555555554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-13  Score=108.67  Aligned_cols=109  Identities=15%  Similarity=0.015  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +...|..++..|+|++|+..|+++|..+|+++.++.++|.|+..+|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999988877777777777


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIY  216 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  216 (507)
                      ++++|+..+++++     ...|..++++..++.+
T Consensus        86 ~~~~A~~~~~~a~-----~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 RFEEAKRTYEEGL-----KHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHH-----TTCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-----HhCCCCHHHHHHHHHH
Confidence            7777777777654     2344455555544443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-13  Score=118.93  Aligned_cols=130  Identities=18%  Similarity=0.189  Sum_probs=110.7

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      +..|.+++..|+|++|++.|+++   .|.++.+|+++|.++..+|++++|+..|+++++.++..                
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----------------   69 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----------------   69 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----------------
Confidence            34799999999999999999864   55678899999999999999999999999886433221                


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc----------------hhHHHHHHHHHHHhcCCHHHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD----------------LLALNVYGAMCYYKLDYYDVS  153 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~la~~~~~~g~~~~A  153 (507)
                                +..+.++|.++..+|++++|+..|++++...|.                ..++++++|.++.++|++++|
T Consensus        70 ----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_          70 ----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  139 (192)
T ss_dssp             ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ----------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence                      234778999999999999999999999986542                247889999999999999999


Q ss_pred             HHHHHHHHhcCCCcH
Q psy12000        154 QEQVAMYLAQKPTSR  168 (507)
Q Consensus       154 ~~~~~~~l~~~p~~~  168 (507)
                      ++.+++++..+|+..
T Consensus       140 ~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_         140 EEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHhcCCCcc
Confidence            999999999988754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.5e-13  Score=115.31  Aligned_cols=138  Identities=17%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHH
Q psy12000         44 FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY  123 (507)
Q Consensus        44 ~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~  123 (507)
                      ++.|.++...|+|++|++.|.++.+...                             ..++++|.+|..+|++++|++.|
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i~~~~~-----------------------------~~~~nlG~~~~~~g~~~~A~~~~   59 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAVQDPHS-----------------------------RICFNIGCMYTILKNMTEAEKAF   59 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCH-----------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcCCCCH-----------------------------HHHHHHHHHHHHcCCchhHHHHH
Confidence            3679999999999999999988643211                             12568999999999999999999


Q ss_pred             HHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCC
Q psy12000        124 KRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLI  203 (507)
Q Consensus       124 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~  203 (507)
                      +++++.+|+++.+++++|.|+..+|++++|++.|++++...|.+...       .+.                .......
T Consensus        60 ~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~-------~~~----------------~~~~~~~  116 (192)
T d1hh8a_          60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-------DYK----------------ILGLQFK  116 (192)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE-------ECG----------------GGTBCCE
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchH-------HHH----------------Hhhhhcc
Confidence            99999999999999999999999999999999999999877765421       000                0000111


Q ss_pred             CChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        204 DVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      ....++++++|.++...|++++|.+.+...
T Consensus       117 ~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_         117 LFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            223467899999999999999999988754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-15  Score=148.71  Aligned_cols=225  Identities=6%  Similarity=-0.146  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHh
Q psy12000        118 EAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVS  197 (507)
Q Consensus       118 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~  197 (507)
                      +|+++|++++...|+..++++++|.++...|++++|   |++++..+|+...+.+....+.                   
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-------------------   61 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-------------------   61 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-------------------
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-------------------
Confidence            799999999999999999999999999999999887   7888888887654322111100                   


Q ss_pred             hCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCc
Q psy12000        198 ILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE--PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQ  275 (507)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~  275 (507)
                                            ...|..+++.++...  ...+....                                 
T Consensus        62 ----------------------~~~y~~~ie~~r~~~k~~~~~~~~~---------------------------------   86 (497)
T d1ya0a1          62 ----------------------NHAFKNQITTLQGQAKNRANPNRSE---------------------------------   86 (497)
T ss_dssp             ----------------------HHHTHHHHHHHHHHHSCSSCTTTTH---------------------------------
T ss_pred             ----------------------HHHHHHHHHHHHHhcccccCccHHH---------------------------------
Confidence                                  001222222232210  00010000                                 


Q ss_pred             ccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhh
Q psy12000        276 SECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISH  355 (507)
Q Consensus       276 ~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  355 (507)
                            .....++......+.|+.|+..+.+....+|++...+.++|.++...|++++|+..+.+++..++..       
T Consensus        87 ------~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------  153 (497)
T d1ya0a1          87 ------VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH-------  153 (497)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHH-------
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH-------
Confidence                  0001123444456677778877777777777777777788888888888888888776654322100       


Q ss_pred             hcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHh
Q psy12000        356 LTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAM  435 (507)
Q Consensus       356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~  435 (507)
                                                             ....+|.++..+|+|++|+.+|++++..+|++...+..+|.
T Consensus       154 ---------------------------------------~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         154 ---------------------------------------CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI  194 (497)
T ss_dssp             ---------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence                                                   01334566777788888888888888888888888888888


Q ss_pred             hccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        436 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       436 ~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                      +|...|++.+|+..|.+++...|..+.|...++.++
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            888888888888888888888888888877666543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-13  Score=115.71  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=87.9

Q ss_pred             hhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhH
Q psy12000          9 DAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKS   88 (507)
Q Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (507)
                      +...|..++..|+|++|+..|+++++.+|+++.+|+++|.+++.+|++++|+..++++.+..+..               
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~---------------   77 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------   77 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc---------------
Confidence            44578999999999999999999999999999999999988888888888888777664322211               


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH--hcCCHHHHHH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY--KLDYYDVSQE  155 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~g~~~~A~~  155 (507)
                                 +..+..+|.++...|++++|+..|++++..+|+++.+...++.|..  ..+.+++|+.
T Consensus        78 -----------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          78 -----------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       2225567777777777777777777777777777777666665543  3333444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.6e-13  Score=111.64  Aligned_cols=120  Identities=13%  Similarity=0.116  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +...|..++..|+|++|+..|+++++.+|+++.+++++|.|++.+|++++|+..|+++++.+|++..++..+|.+++.+|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999888888888888


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHH--HHhhccHHHHH
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIY--HLKQEEHQEAF  227 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~  227 (507)
                      ++++|...+++++.     ..|..++++..++.+  ....+.+++|+
T Consensus        93 ~~~eA~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          93 KFRAALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             CHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887653     234455555554433  33344455554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=109.62  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=72.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHH
Q psy12000         11 WLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLM   90 (507)
Q Consensus        11 ~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (507)
                      .++..+...+++++|.+.|++++..+|.++++++++|.+++..++.                                  
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~----------------------------------   49 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN----------------------------------   49 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH----------------------------------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcch----------------------------------
Confidence            3677888999999999999999999999999999999988754332                                  


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCch--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12000         91 EYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDL--LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSR  168 (507)
Q Consensus        91 ~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  168 (507)
                                             +++++|+.+|++++..+|..  .++++++|.+|..+|++++|+++|+++++.+|++.
T Consensus        50 -----------------------~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          50 -----------------------DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             -----------------------HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             -----------------------HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence                                   22344555555555544432  34555555555555555555555555555555555


Q ss_pred             HHHHHHhh
Q psy12000        169 IALNLKAC  176 (507)
Q Consensus       169 ~a~~~~a~  176 (507)
                      .|..++..
T Consensus       107 ~A~~l~~~  114 (122)
T d1nzna_         107 QAKELERL  114 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4e-12  Score=117.70  Aligned_cols=206  Identities=13%  Similarity=-0.061  Sum_probs=142.5

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCC------CChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPN------PPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      .+...|.+|...|+|++|++.|.++++..+      .....+..+|.||..+|++++|+..++++...          ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~----------~~  108 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI----------FT  108 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH----------hh
Confidence            355589999999999999999999988632      22367889999999999999999999876421          11


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHhcCCHHHHH
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFL-RCHYQEAIDIYKRILLDHKD------LLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~  154 (507)
                      ..+.....          ...+..+|.++.. .|++++|++.|++++...+.      ...++.++|.++..+|+|++|+
T Consensus       109 ~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         109 HRGQFRRG----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             HTTCHHHH----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccchhH----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence            11111110          1125678888876 59999999999999887532      3466888999999999999999


Q ss_pred             HHHHHHHhcCCCcHH-------HHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhH-----hHHHHHHHHHh--h
Q psy12000        155 EQVAMYLAQKPTSRI-------ALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPE-----SRLNLVIYHLK--Q  220 (507)
Q Consensus       155 ~~~~~~l~~~p~~~~-------a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~  220 (507)
                      +.|++++...|....       .+...+.++...+++..|...++++.     ...|..+.     ....++..+-.  .
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~-----~~~~~~~~sre~~~l~~l~~a~~~~d~  253 (290)
T d1qqea_         179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ-----SEDPNFADSRESNFLKSLIDAVNEGDS  253 (290)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-----CC---------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HhCCCccchHHHHHHHHHHHHHHhcCH
Confidence            999999988877653       22344555566778888877777653     12221111     22334444433  3


Q ss_pred             ccHHHHHHHHHhcCCCCh
Q psy12000        221 EEHQEAFDLIKNLEPSVP  238 (507)
Q Consensus       221 ~~~~~A~~~l~~~~~~~~  238 (507)
                      +.+++|+..+.++.+.+|
T Consensus       254 e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         254 EQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHhhcCH
Confidence            457888888777666665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.9e-12  Score=119.90  Aligned_cols=213  Identities=10%  Similarity=-0.081  Sum_probs=141.4

Q ss_pred             HHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHH
Q psy12000         44 FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIY  123 (507)
Q Consensus        44 ~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~  123 (507)
                      ...|.+|..+|+|++|+.+|.++.+          +....++...+          ...+..+|.+|..+|++++|+++|
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~----------~~~~~~~~~~~----------a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAAD----------YQKKAGNEDEA----------GNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHH----------HHHHTTCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHH----------HHHHcCCCHHH----------HHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3458889999999999999988642          11111111111          112667899999999999999999


Q ss_pred             HHHHHhCCch------hHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHH
Q psy12000        124 KRILLDHKDL------LALNVYGAMCYYK-LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILV  196 (507)
Q Consensus       124 ~~~l~~~p~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~  196 (507)
                      ++++...+..      ..++..+|.++.. .|++++|++.+++++...+...              +.            
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--------------~~------------  154 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------SV------------  154 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------CH------------
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--------------ch------------
Confidence            9999886543      4677788888865 6999999999998875433211              00            


Q ss_pred             hhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC---CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCC
Q psy12000        197 SILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE---PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS  273 (507)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~  273 (507)
                             +....++.++|.+|..+|+|++|+..+.++.   +..+....                               
T Consensus       155 -------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~-------------------------------  196 (290)
T d1qqea_         155 -------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-------------------------------  196 (290)
T ss_dssp             -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-------------------------------
T ss_pred             -------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh-------------------------------
Confidence                   1112457789999999999999999887642   11111000                               


Q ss_pred             CcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCc-----hHHHHHHHHHHh--hCCHHHHHHHHHhhcccC
Q psy12000        274 SQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDD-----SFNFNFAQAKCA--LGQYKEAEEMFLLVQNEG  345 (507)
Q Consensus       274 ~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~-----~~~~~lg~~~~~--~g~~~~A~~~~~~~~~~~  345 (507)
                           .....+..++.++...++++.|...++++.+.+|..+     .....++.++..  .+.+++|+..|.++.+.+
T Consensus       197 -----~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         197 -----SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             -----GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             -----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence                 0001122457788889999999999999988877532     223445555555  456999999998877655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=9.1e-13  Score=114.79  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhc
Q psy12000        102 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKL  181 (507)
Q Consensus       102 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~  181 (507)
                      .+...|..++..|+|++|+..|+++|..+|+++.++.++|.||.++|++++|+..|++++..+|+++.++..+|.+++.+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHhhHHHH
Q psy12000        182 FTSRAAENQLKPIL  195 (507)
Q Consensus       182 ~~~~~A~~~l~~~~  195 (507)
                      |++++|...+++++
T Consensus        86 ~~~~~A~~~~~~al   99 (201)
T d2c2la1          86 ESYDEAIANLQRAY   99 (201)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.7e-13  Score=119.60  Aligned_cols=105  Identities=17%  Similarity=0.054  Sum_probs=82.9

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCC
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGD   85 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (507)
                      .+.....|..++..|+|++|+..|+++++.+|.++.+|.++|.||..+|++++|+..|+++....+..            
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------------   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------------
Confidence            34455689999999999999999999999999999999999999988888888888888876544432            


Q ss_pred             hhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHH
Q psy12000         86 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLAL  136 (507)
Q Consensus        86 ~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  136 (507)
                                    +..++.+|.+|..+|++++|+..|++++..+|++...
T Consensus        72 --------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          72 --------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             --------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence                          1225667778888888888888888887777755433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-12  Score=110.48  Aligned_cols=78  Identities=14%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +.++|.+|.+.|+|++|+..++++|..+|+++.+++.+|.|+..+|++++|+..|+++++.+|+++.+...++.+...
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999999999999999877666555433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-12  Score=108.79  Aligned_cols=144  Identities=14%  Similarity=0.066  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL  397 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (507)
                      +...|..++..|+|++|+..|.+++...+......                          .... .....+.  .....
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------------------~~~~-~~~~~~~--~~~~~   66 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------------------NEEA-QKAQALR--LASHL   66 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------------------SHHH-HHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------------------hHHH-hhhchhH--HHHHH
Confidence            45689999999999999999998874322110000                          0000 0000000  01123


Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCCh
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  477 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~  477 (507)
                      .++.+++..|+|++|+..+++++..+|+++.+++.+|.||+.+|++++|+..|+++++++|+++.+...++.+.-.+...
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999999999999999999999999999998887776655


Q ss_pred             HHHHH-HHHHHHHh
Q psy12000        478 RAAEN-QLKPILVS  490 (507)
Q Consensus       478 ~~~~~-~~~~~~~~  490 (507)
                      ...++ .|+++++.
T Consensus       147 ~~~e~~~~~~~f~~  160 (170)
T d1p5qa1         147 LAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            54443 35555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=1.3e-12  Score=102.07  Aligned_cols=91  Identities=8%  Similarity=-0.075  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      .+.+|..+..+|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            57889999999999999999999999999999999999999999999999999999999999998876655555555555


Q ss_pred             ChHHHHHhhHH
Q psy12000        183 TSRAAENQLKP  193 (507)
Q Consensus       183 ~~~~A~~~l~~  193 (507)
                      ++++|...+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            55555544443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=9.1e-13  Score=108.13  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=97.6

Q ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHH
Q psy12000         15 CHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQ   94 (507)
Q Consensus        15 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (507)
                      .+-+++.|++|+..|+++++.+|+++++++.+|.++...+++..+.+                                 
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e---------------------------------   52 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD---------------------------------   52 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH---------------------------------
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH---------------------------------
Confidence            45678889999999999999999999999999999988888766543                                 


Q ss_pred             HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhc
Q psy12000         95 KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY-----------YDVSQEQVAMYLAQ  163 (507)
Q Consensus        95 ~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~~l~~  163 (507)
                                       ..+.+++|+..|+++++++|+++.+++++|.+|..+|+           +++|++.|++++..
T Consensus        53 -----------------~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          53 -----------------AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence                             12467899999999999999999999999999988764           79999999999999


Q ss_pred             CCCcHHHHHHHhhh
Q psy12000        164 KPTSRIALNLKACN  177 (507)
Q Consensus       164 ~p~~~~a~~~~a~~  177 (507)
                      +|++..+...++.+
T Consensus       116 ~P~~~~~~~~L~~~  129 (145)
T d1zu2a1         116 QPDNTHYLKSLEMT  129 (145)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99998876554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-12  Score=102.86  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHhhcCCch--hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhh
Q psy12000        407 CHYQEAIDIYKRILLDHKDL--LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTY  472 (507)
Q Consensus       407 ~~~~~Ai~~~~~~l~~~p~~--~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~  472 (507)
                      +++++||..|++++..+|..  +.+++++|.+|.++|++++|+++|+++++++|++..|..+++.+.-
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34556666666666655544  3467889999999999999999999999999999999888887643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=7e-12  Score=103.88  Aligned_cols=75  Identities=16%  Similarity=0.079  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      +.++|.+|+++|++++|+..|+++|..+|++..+++.+|.++..+|++++|+..|+++++.+|++..+...+..+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999999876554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.9e-12  Score=101.38  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccc-hHHHHHHhcCChhH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTR-LSFHLSHKLGDEKS   88 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (507)
                      -.+|..++..|+|++|+.+|+++++.+|+++.+++++|.+|..+|+|++|+..+++++...+... .+..++.       
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~-------   80 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-------   80 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH-------
Confidence            45899999999999999999999999999999999999999999999999999998864333221 1222221       


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHH
Q psy12000         89 LMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYG  140 (507)
Q Consensus        89 ~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  140 (507)
                                   .+..+|.++...+++++|+.+|++++..+|+. ++...+
T Consensus        81 -------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l  118 (128)
T d1elra_          81 -------------AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKC  118 (128)
T ss_dssp             -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHH
T ss_pred             -------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHH
Confidence                         25689999999999999999999999888764 444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=2.1e-10  Score=106.84  Aligned_cols=288  Identities=12%  Similarity=0.055  Sum_probs=189.9

Q ss_pred             cchhhHHHHHHHhhcC----------HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccch
Q psy12000          6 SLTDAWLGYCHFHLGQ----------YKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRL   75 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~   75 (507)
                      ..+.+|+-++.+..++          .+.+...|++++...|.++++|+..+..+...++....                
T Consensus         6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~----------------   69 (308)
T d2onda1           6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE----------------   69 (308)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHH----------------
Confidence            3467788888776543          56688899999999999999998877655433322111                


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHhcCCHHHHH
Q psy12000         76 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLD-HKDLLALNVYGAMCYYKLDYYDVSQ  154 (507)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~  154 (507)
                                                    .+.+....+..++|..+|++++.. .|.+..++...+.+....|++++|.
T Consensus        70 ------------------------------~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~  119 (308)
T d2onda1          70 ------------------------------KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH  119 (308)
T ss_dssp             ------------------------------TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ------------------------------HHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHH
Confidence                                          112223446778999999999975 7888889999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC
Q psy12000        155 EQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE  234 (507)
Q Consensus       155 ~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~  234 (507)
                      .+|++++...|.+..                                      .++..++....+.|++++|...+.+..
T Consensus       120 ~i~~~~l~~~~~~~~--------------------------------------~~w~~~~~~~~~~~~~~~ar~i~~~al  161 (308)
T d2onda1         120 SIYNRLLAIEDIDPT--------------------------------------LVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHTSSSSCTH--------------------------------------HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChH--------------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999988886542                                      123344445556666676666664421


Q ss_pred             CCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHH-HhhcCHHHHHHHHHHhhhhcCC
Q psy12000        235 PSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSF-FLLRSFKDVILYLSSIKSYYTS  313 (507)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~Ai~~~~~~~~~~~~  313 (507)
                      ...|                                        .....+...|... ...|+.+.|..+|+.+....|+
T Consensus       162 ~~~~----------------------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         162 EDAR----------------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             TSTT----------------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HhCC----------------------------------------CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            1111                                        0111122344443 3468899999999999988898


Q ss_pred             CchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcH
Q psy12000        314 DDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSL  393 (507)
Q Consensus       314 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  393 (507)
                      ++.++...+..+...|++++|..+|++++...+.+..              +..                          
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~--------------~~~--------------------------  241 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------------KSG--------------------------  241 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--------------GCH--------------------------
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--------------HHH--------------------------
Confidence            8888888899999999999999999998754321100              000                          


Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHh
Q psy12000        394 EEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  469 (507)
Q Consensus       394 ~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~  469 (507)
                      .-+..+.......|+.+.+.++++++.+..|+.......           ...+..| +.+...|.++.-+..+|.
T Consensus       242 ~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~-----------~~~~~ry-~~~d~~~~~~~~l~~~~~  305 (308)
T d2onda1         242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET-----------ALLVDRY-KFMDLYPCSASELKALGY  305 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHH-----------HHHHTTT-CBTTBCSSCHHHHHTTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchH-----------HHHHHHH-HhcccCcCCHHHHHHhcc
Confidence            001122222334588999999999998888877653211           1111111 345677777776655553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.29  E-value=1.4e-11  Score=103.81  Aligned_cols=148  Identities=10%  Similarity=-0.047  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL  397 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (507)
                      +...|..++..|+|++|+..|.+++..-+.           ++........             ..   ..+.  .....
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~-----------~~~~~~~~~~-------------~~---~~~~--~~~~~   68 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEM-----------EYGLSEKESK-------------AS---ESFL--LAAFL   68 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----------CCSCCHHHHH-------------HH---HHHH--HHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hhccchhhhh-------------hc---chhH--HHHHH
Confidence            456888999999999999999887632110           0000000000             00   0000  00113


Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCCh
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTS  477 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~  477 (507)
                      .++.+++..|+|++|+..+++++..+|+++.+++++|.+|..+|++++|+..|+++++++|+++.+...++.+.-.+...
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            35678888899999999999999999999999999999999999999999999999999999999999888887665543


Q ss_pred             -HHHHHHHHHHHHhCCCC
Q psy12000        478 -RAAENQLKPILVSAGPR  494 (507)
Q Consensus       478 -~~~~~~~~~~~~~~~~~  494 (507)
                       +.....|++++...+++
T Consensus       149 ~e~~kk~~~~~f~~~~~~  166 (168)
T d1kt1a1         149 NERDRRTYANMFKKFAEQ  166 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhhhc
Confidence             34445788888777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=5.2e-12  Score=103.53  Aligned_cols=113  Identities=13%  Similarity=0.117  Sum_probs=93.2

Q ss_pred             HHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHH
Q psy12000        291 FFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSF  370 (507)
Q Consensus       291 ~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  370 (507)
                      +.+.+.|++|+..|+++.+.+|+++.+++++|.++...+++..+.+.                                 
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~---------------------------------   53 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA---------------------------------   53 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH---------------------------------
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH---------------------------------
Confidence            55667788899989888888888888888888888776655444331                                 


Q ss_pred             HHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhcccccc--------
Q psy12000        371 HLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDY--------  442 (507)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~--------  442 (507)
                                                         .+.+++|+..|+++++.+|+++.+++++|.+|..+|+        
T Consensus        54 -----------------------------------~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~   98 (145)
T d1zu2a1          54 -----------------------------------KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEA   98 (145)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             -----------------------------------HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHH
Confidence                                               1457889999999999999999999999999988764        


Q ss_pred             ---chhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        443 ---YDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       443 ---~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                         +++|++.|+++++++|+++.++..++...
T Consensus        99 ~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          99 KHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence               68999999999999999999888777653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.3e-12  Score=100.71  Aligned_cols=99  Identities=12%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhcc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLF  182 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~  182 (507)
                      +-.+|..++..|+|++|+.+|+++|..+|+++.++.++|.||..+|+|++|++.+++++..+|.++.++..++       
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a-------   79 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA-------   79 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH-------
Confidence            4579999999999999999999999999999999999999999999999999999999999988775544332       


Q ss_pred             ChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        183 TSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       183 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                                               .++..+|.++...+++++|+..+.+.
T Consensus        80 -------------------------~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          80 -------------------------KAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                                     34667888888999999999888653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.27  E-value=2.3e-11  Score=102.45  Aligned_cols=78  Identities=13%  Similarity=0.008  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      +.++|.+|..+|++++|+..+++++..+|++..+++++|.++..+|++++|+..|++++..+|+++.+...++.+...
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            668999999999999999999999999999999999999999999999999999999999999999877666555433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=1.1e-11  Score=104.70  Aligned_cols=123  Identities=16%  Similarity=0.061  Sum_probs=89.9

Q ss_pred             HHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHh-hcHHHHHHHHHHHHHhhcHHHHHHH
Q psy12000         44 FNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLE-DSLEEQLCLASIHFLRCHYQEAIDI  122 (507)
Q Consensus        44 ~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~la~~~~~~g~~~~A~~~  122 (507)
                      ...|..++..|+|++|+..|.++......       ...........    .+. .....+.++|.++.+.|+|++|+..
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~-------~~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEG-------SRAAAEDADGA----KLQPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HHHHSCHHHHG----GGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhh-------hhhhhhhHHHH----HhChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            45677777788888888777665321000       00000000000    000 1122367899999999999999999


Q ss_pred             HHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000        123 YKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus       123 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                      |+++|+.+|+++.+++++|.++..+|++++|+..|+++++.+|++..+...++.+
T Consensus       100 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1         100 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998876655444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.27  E-value=5.8e-12  Score=98.31  Aligned_cols=92  Identities=9%  Similarity=-0.065  Sum_probs=86.3

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        397 LCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       397 ~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      ...|..++..|++++|+..|++++..+|+++.++..+|.+|.++|++++|+..++++++++|+++.++..+|.++..+++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            45567888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q psy12000        477 SRAAENQLKPIL  488 (507)
Q Consensus       477 ~~~~~~~~~~~~  488 (507)
                      ...|...|++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999988888765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.25  E-value=1.8e-11  Score=101.42  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhHHHHHHHHcCCcHHHHHHHHHhhhcHHHHH
Q psy12000        318 NFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQL  397 (507)
Q Consensus       318 ~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  397 (507)
                      +...|..+++.|+|.+|+..|.+++..-+....           .   ...            ........+.  .....
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-----------~---~~~------------~~~~~~~~~~--~~~~~   71 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-----------W---DDQ------------ILLDKKKNIE--ISCNL   71 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-----------C---CCH------------HHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-----------h---hhH------------HHHHhhhhHH--HHHHh
Confidence            345788899999999999999988643211000           0   000            0000000000  01123


Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhhh
Q psy12000        398 CLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNT  471 (507)
Q Consensus       398 ~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~  471 (507)
                      .++.+++..|++++|+..++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|+|+.+.+.+..+.
T Consensus        72 Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46778888999999999999999999999999999999999999999999999999999999999988776653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-12  Score=131.21  Aligned_cols=212  Identities=8%  Similarity=-0.023  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhhcHHHH
Q psy12000         24 QALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLEDSLEEQ  103 (507)
Q Consensus        24 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (507)
                      +|+++|+++++..|+.+++++.+|.++..+|++++|   |++++..++..      +..                    +
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~------a~~--------------------~   54 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY------ALD--------------------K   54 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH------HHH--------------------H
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh------HHH--------------------H
Confidence            799999999999999999999999999999999987   55543211110      000                    0


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHHhC--CchhH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh
Q psy12000        104 LCLASIHFLRCHYQEAIDIYKRILLDH--KDLLA-LNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK  180 (507)
Q Consensus       104 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~  180 (507)
                      ..  ....-+..|..+++.+++.+...  ++... ....++.++...+.|+.|+..+.+..+.+|++..++.        
T Consensus        55 ~~--e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~--------  124 (497)
T d1ya0a1          55 KV--EQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS--------  124 (497)
T ss_dssp             TH--HHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred             hH--HHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHH--------
Confidence            00  00111223556777777776544  22222 2223455666778888888888888887777654433        


Q ss_pred             ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHH
Q psy12000        181 LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREM  260 (507)
Q Consensus       181 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (507)
                                                     ++|..+.+.|++++|+..+.+.                           
T Consensus       125 -------------------------------~lg~~~~~~~~~~~A~~~~~~a---------------------------  146 (497)
T d1ya0a1         125 -------------------------------QLGIISNKQTHTSAIVKPQSSS---------------------------  146 (497)
T ss_dssp             -------------------------------------------------CCHH---------------------------
T ss_pred             -------------------------------HhHHHHHhCCCHHHHHHHHHHH---------------------------
Confidence                                           3333444444444444333211                           


Q ss_pred             HHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHh
Q psy12000        261 VKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLL  340 (507)
Q Consensus       261 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  340 (507)
                          ...           +...+...+|.++..+++|++|+.+|+++....|++..+++++|.++...|++.+|+.+|.+
T Consensus       147 ----l~~-----------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         147 ----CSY-----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             ----HHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----hCC-----------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                000           00011235788888888888888888888888888888888888888888888888888888


Q ss_pred             hcccCCC
Q psy12000        341 VQNEGLK  347 (507)
Q Consensus       341 ~~~~~~~  347 (507)
                      ++...++
T Consensus       212 al~~~~~  218 (497)
T d1ya0a1         212 SIAVKFP  218 (497)
T ss_dssp             HHSSSBC
T ss_pred             HHhCCCC
Confidence            8754433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1e-10  Score=98.55  Aligned_cols=118  Identities=16%  Similarity=0.123  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh----------------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLD----------------HKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPT  166 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  166 (507)
                      ....|..++..|+|++|+..|+++|..                +|....++.++|.|+.++|++++|+..++++++.+|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            456899999999999999999999864                3456678899999999999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHH
Q psy12000        167 SRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQE  225 (507)
Q Consensus       167 ~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  225 (507)
                      ++.++..+|.+++.+|+++.|+..|+++++     ..|..+++...++.+......+.+
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~-----l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888888888888887653     344455666666666555444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.19  E-value=5.8e-09  Score=94.40  Aligned_cols=227  Identities=12%  Similarity=0.025  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHh
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKPTSRIALNLKA  175 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~a~~~~a  175 (507)
                      |+.++.||..++.+|++++|+++|+++.+.  ++..+.+.||.+|..    ..++.+|...++......  ++.+...++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            556889999999999999999999999764  578899999999997    678999999999876543  555555555


Q ss_pred             hhhhh----ccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHHhc-CCCChHHHHHHHH
Q psy12000        176 CNTYK----LFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIKNL-EPSVPQEYILKAV  246 (507)
Q Consensus       176 ~~~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~~~-~~~~~~~~~~~~~  246 (507)
                      .++..    ..+.+.|...++....       ...+.+...++..+..    ......|...+... .+.++......+.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~-------~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~  150 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACD-------LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS  150 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhh-------hhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence            54433    3456777777766532       1234556667766654    45567777766653 3455556666666


Q ss_pred             HHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHh----hcCHHHHHHHHHHhhhhcCCCchHHHHHH
Q psy12000        247 VQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFL----LRSFKDVILYLSSIKSYYTSDDSFNFNFA  322 (507)
Q Consensus       247 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg  322 (507)
                      .+.......   .....+..+++...+.    ....+...+|.+|..    .+++++|+.+|+++.+.  .++.+.++||
T Consensus       151 ~~~~~~~~~---~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG  221 (265)
T d1ouva_         151 LYDAGRGTP---KDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLG  221 (265)
T ss_dssp             HHHHTSSSC---CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             hhccCCCcc---cccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHH
Confidence            655422221   2234445555433221    234456678988887    67999999999988765  3566788999


Q ss_pred             HHHHh----hCCHHHHHHHHHhhcccCC
Q psy12000        323 QAKCA----LGQYKEAEEMFLLVQNEGL  346 (507)
Q Consensus       323 ~~~~~----~g~~~~A~~~~~~~~~~~~  346 (507)
                      .+|..    .+++++|+.+|+++.+.+.
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            99987    4489999999999865543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.7e-11  Score=88.32  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-------hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12000        100 LEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-------LLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALN  172 (507)
Q Consensus       100 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~  172 (507)
                      +++.+.+|.+++.+|+|++|+..|++++...|.       ..+++.++|.++.++|++++|+..++++++.+|+++.+.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            456889999999999999999999999988653       3678999999999999999999999999999999998876


Q ss_pred             HHhh
Q psy12000        173 LKAC  176 (507)
Q Consensus       173 ~~a~  176 (507)
                      .++.
T Consensus        85 Nl~~   88 (95)
T d1tjca_          85 NLKY   88 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=8.3e-09  Score=95.67  Aligned_cols=187  Identities=11%  Similarity=-0.044  Sum_probs=137.6

Q ss_pred             cCHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000         20 GQYKQALGIYETLRHL-PNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED   98 (507)
Q Consensus        20 g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (507)
                      +..++|...|+++++. .|.+...|+..+.....+|++++|...++++....+....                       
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-----------------------  134 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----------------------  134 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----------------------
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH-----------------------
Confidence            4568899999999985 7888889999999999999999999999987653332210                       


Q ss_pred             cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhh
Q psy12000         99 SLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYY-KLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  177 (507)
Q Consensus        99 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~  177 (507)
                        ..+...+......|++++|+++|++++...|.+...+...|.... ..|+.+.|..+|++++..+|+++..+...+..
T Consensus       135 --~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~  212 (308)
T d2onda1         135 --LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             --HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence              013455667778899999999999999999999888888887654 46899999999999999999998877777777


Q ss_pred             hhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        178 TYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       178 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                      ....|+.+.|...|+++++.. +..+......|......-...|+.+.+..+.++
T Consensus       213 ~~~~g~~~~aR~~fe~ai~~~-~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         213 LSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            777888888888888765311 111111122344444444455666666555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-10  Score=87.39  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHhhcCCch-------hhhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHH
Q psy12000        395 EQLCLASIHFLRCHYQEAIDIYKRILLDHKDL-------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLK  467 (507)
Q Consensus       395 ~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~-------~~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~  467 (507)
                      +-..+|.+++..|+|++|+.+|+++++..|+.       ..++.++|.+|+++|++++|++.++++|+++|+++.+++.+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            44567889999999999999999999765443       46788999999999999999999999999999999998877


Q ss_pred             Hhhh
Q psy12000        468 ACNT  471 (507)
Q Consensus       468 ~~~~  471 (507)
                      +...
T Consensus        87 ~~~~   90 (95)
T d1tjca_          87 KYFE   90 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.94  E-value=1.4e-09  Score=90.01  Aligned_cols=110  Identities=10%  Similarity=-0.049  Sum_probs=75.8

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHH
Q psy12000         10 AWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSL   89 (507)
Q Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (507)
                      +..|..++..|+|++|+..|++++++.|+.++.+.....       ...                               
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~-------~~~-------------------------------   54 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHA-------GFD-------------------------------   54 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHH-------HHH-------------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccc-------hhH-------------------------------
Confidence            334888999999999999999999988876542200000       000                               


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12000         90 MEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKD-----------LLALNVYGAMCYYKLDYYDVSQEQVA  158 (507)
Q Consensus        90 ~~~~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~  158 (507)
                                ...+.++|.+|...|++++|+..+++++...|.           ...+++++|.+|..+|++++|++.|+
T Consensus        55 ----------a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~  124 (156)
T d2hr2a1          55 ----------AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK  124 (156)
T ss_dssp             ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence                      001446677777777777777777777765432           23467888999999999999999999


Q ss_pred             HHHhcCCCc
Q psy12000        159 MYLAQKPTS  167 (507)
Q Consensus       159 ~~l~~~p~~  167 (507)
                      +++.+.|..
T Consensus       125 ~Al~l~~~~  133 (156)
T d2hr2a1         125 KVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHhhHHh
Confidence            888765543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.92  E-value=9.8e-08  Score=86.00  Aligned_cols=203  Identities=11%  Similarity=-0.038  Sum_probs=125.3

Q ss_pred             cchhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hccHHHHHHHHHhCCCCccccchHHHHHH
Q psy12000          6 SLTDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFY----LGMYLQANQILEKVPPSRAKTRLSFHLSH   81 (507)
Q Consensus         6 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~   81 (507)
                      +.+.+.+|..++..||+++|+++|+++.+.  .+.++++.+|.+|..    ..++..|...++.+.....          
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~----------   69 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY----------   69 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc----------
Confidence            567788999999999999999999999864  578899999999987    6688888887776532111          


Q ss_pred             hcCChhHHHHHHHHHhhcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHH
Q psy12000         82 KLGDEKSLMEYHQKLEDSLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVS  153 (507)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A  153 (507)
                                        +.....+|.++..    .++.+.|...|+++....+.  .+...++..+..    ......|
T Consensus        70 ------------------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~~~~~~~~a  129 (265)
T d1ouva_          70 ------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKVVTRDFKKA  129 (265)
T ss_dssp             ------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ------------------cchhhccccccccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCcccchhHHH
Confidence                              1113344444433    35667777777777665443  333444544443    3345555


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHhhhhhhc----cChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHH
Q psy12000        154 QEQVAMYLAQKPTSRIALNLKACNTYKL----FTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQE  225 (507)
Q Consensus       154 ~~~~~~~l~~~p~~~~a~~~~a~~~~~~----~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  225 (507)
                      ...+.+...  +.+..+...++.++...    .+...+...++...+       ...+++.+++|.+|..    ..++++
T Consensus       130 ~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g~~~A~~~lg~~y~~g~~~~~d~~~  200 (265)
T d1ouva_         130 VEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-------LKDSPGCFNAGNMYHHGEGATKNFKE  200 (265)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             HHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc-------ccccccccchhhhcccCcccccchhh
Confidence            555555443  33344444445544431    233444444444321       2245677788877776    567888


Q ss_pred             HHHHHHhc-CCCChHHHHHHHHHHH
Q psy12000        226 AFDLIKNL-EPSVPQEYILKAVVQV  249 (507)
Q Consensus       226 A~~~l~~~-~~~~~~~~~~~~~~~~  249 (507)
                      |+..+.+. ...++......|.++.
T Consensus       201 A~~~~~~aa~~g~~~a~~~LG~~y~  225 (265)
T d1ouva_         201 ALARYSKACELENGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHhhhhcccCHHHHHHHHHHHH
Confidence            88877664 3345666666666554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.90  E-value=1.6e-09  Score=89.70  Aligned_cols=102  Identities=13%  Similarity=-0.027  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL------------LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      .+..|..++..|+|++|+..|+++|++.|+.            ..++.++|.+|..+|++++|++.+++++...|.....
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3455889999999999999999999988753            3578899999999999999999999998765532210


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHh
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKN  232 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~  232 (507)
                                  ..+                ..+....+++++|.+|...|++++|+..+++
T Consensus        92 ------------~~~----------------~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          92 ------------NQD----------------EGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             ------------TST----------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------ccc----------------ccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                        000                0011224678899999999999999988865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.76  E-value=1.1e-08  Score=91.97  Aligned_cols=122  Identities=7%  Similarity=-0.076  Sum_probs=93.3

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHH
Q psy12000        108 SIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAA  187 (507)
Q Consensus       108 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A  187 (507)
                      .-....|++++|+..|+++++.+|++..++..+|.+++..|++++|+..|+++++.+|++..+...++.+....+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34567899999999999999999999999999999999999999999999999999999998877776665544443333


Q ss_pred             HHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        188 ENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                      ......    ......+.....+...+..+...|++++|...+.++
T Consensus        84 ~~~~~~----~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          84 AQGAAT----AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             TTSCCC----EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhhh----hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            221110    011112333455667788889999999998888654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.67  E-value=1.5e-08  Score=91.07  Aligned_cols=132  Identities=11%  Similarity=-0.028  Sum_probs=103.9

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHH
Q psy12000         13 GYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEY   92 (507)
Q Consensus        13 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (507)
                      +.-.+..|++++|+..|+++++.+|++++++..+|.++...|++++|+..++++....+..                   
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-------------------   63 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-------------------   63 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-------------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-------------------
Confidence            3456789999999999999999999999999999999999999999999998875432221                   


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHH-HHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000         93 HQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRI-LLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus        93 ~~~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                             ......++.++...+..+++...+.+. +...|+....+...+.++...|++++|.+.++++....|..+..
T Consensus        64 -------~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          64 -------LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             -------HHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence                   111345566666667777666554443 22346666777788999999999999999999999999988754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=4.1e-07  Score=76.31  Aligned_cols=65  Identities=14%  Similarity=0.044  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCc
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY-------LAQKPTS  167 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------l~~~p~~  167 (507)
                      +..++.++...|++++|+..+++++..+|.+..++..++.++...|++.+|++.|+++       +..+|..
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            6678999999999999999999999999999999999999999999999999999998       3456654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.2e-07  Score=72.44  Aligned_cols=77  Identities=14%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHh---HhhHHHHHHHHHHHhhcCCchh-hhHHHHHhhccccccchhHHHHHHHHHhcCCCchhhhhHHHhh
Q psy12000        395 EQLCLASIHFL---RCHYQEAIDIYKRILLDHKDLL-ALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACN  470 (507)
Q Consensus       395 ~~~~l~~~~~~---~~~~~~Ai~~~~~~l~~~p~~~-~~~~~la~~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~  470 (507)
                      .+..++|....   ..+.++||.+++.++..+|... +..+++|.+|+++|++++|..+++.+|+++|+|..|..++..+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            34445555442   3688999999999999998765 6889999999999999999999999999999999999988776


Q ss_pred             h
Q psy12000        471 T  471 (507)
Q Consensus       471 ~  471 (507)
                      -
T Consensus       117 e  117 (124)
T d2pqrb1         117 E  117 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=5e-07  Score=69.00  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHh---hcHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhh
Q psy12000        101 EEQLCLASIHFLR---CHYQEAIDIYKRILLDHKDL-LALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKAC  176 (507)
Q Consensus       101 ~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~  176 (507)
                      +..+..|+.+.+.   .+.++||.++++++..+|.. .+.+++||.+|+++|+|++|.++++++++.+|++..+..++..
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            3477888887754   66789999999999999975 5899999999999999999999999999999999988776655


Q ss_pred             h
Q psy12000        177 N  177 (507)
Q Consensus       177 ~  177 (507)
                      |
T Consensus       116 I  116 (124)
T d2pqrb1         116 V  116 (124)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=1.8e-06  Score=72.25  Aligned_cols=92  Identities=7%  Similarity=-0.053  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhCCch----------------------hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12000        103 QLCLASIHFLRCHYQEAIDIYKRILLDHKDL----------------------LALNVYGAMCYYKLDYYDVSQEQVAMY  160 (507)
Q Consensus       103 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~~  160 (507)
                      +...|......|++++|++.|.+++...|..                      ..++..++.++..+|++++|+..++++
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a   93 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL   93 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            6678999999999999999999999987532                      256788999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHH
Q psy12000        161 LAQKPTSRIALNLKACNTYKLFTSRAAENQLKPI  194 (507)
Q Consensus       161 l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~  194 (507)
                      +..+|.+..++..++.++...|+..+|...|+.+
T Consensus        94 l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          94 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999988888888888888888887766654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.75  E-value=0.00013  Score=57.28  Aligned_cols=113  Identities=12%  Similarity=-0.088  Sum_probs=83.3

Q ss_pred             hcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHHHHHHHhh
Q psy12000         19 LGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLMEYHQKLED   98 (507)
Q Consensus        19 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (507)
                      ..|+++|+++|+++.+..  ++.+.+.++.  ....++++|+.+++++.+.                            .
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------------------------g   53 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL----------------------------N   53 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc----------------------------c
Confidence            358899999999998764  4556677764  3456777787777665321                            1


Q ss_pred             cHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q psy12000         99 SLEEQLCLASIHFL----RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYK----LDYYDVSQEQVAMYLAQKP  165 (507)
Q Consensus        99 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p  165 (507)
                      ++...+.||.+|..    ..++++|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+++|+++.+...
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            23336678888775    56799999999998765  467788899999987    5689999999999876543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.0023  Score=49.67  Aligned_cols=106  Identities=8%  Similarity=-0.135  Sum_probs=65.6

Q ss_pred             hhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhh----ccChHHHH
Q psy12000        113 RCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYK----LFTSRAAE  188 (507)
Q Consensus       113 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~----~~~~~~A~  188 (507)
                      ..++++|+.+|+++.+.+  ++.+.+.++.  ....++++|++.++++.+.  +++.+...++.++..    ..+.+.|.
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            358899999999988764  4455666653  4456888999988887654  456666666665543    23456666


Q ss_pred             HhhHHHHHhhCCCCCCChhHhHHHHHHHHHh----hccHHHHHHHHH
Q psy12000        189 NQLKPILVSILPPLIDVIPESRLNLVIYHLK----QEEHQEAFDLIK  231 (507)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~l~  231 (507)
                      ..|++..+       ..++.+.++||.+|..    ..++.+|+..++
T Consensus        80 ~~~~~aa~-------~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~  119 (133)
T d1klxa_          80 QYYSKACG-------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE  119 (133)
T ss_dssp             HHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHhhhhc-------cCcchHHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence            66665432       1234555666666554    334555555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.042  Score=52.08  Aligned_cols=101  Identities=6%  Similarity=-0.091  Sum_probs=60.3

Q ss_pred             HHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHH
Q psy12000        109 IHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAE  188 (507)
Q Consensus       109 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~  188 (507)
                      .+...++++.-+..|    ...|.+.......+.+....|+.++|...+..+-...+..+..-..               
T Consensus        81 ~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~---------------  141 (450)
T d1qsaa1          81 ELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDK---------------  141 (450)
T ss_dssp             HHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHH---------------
T ss_pred             HHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHH---------------
Confidence            345567766644433    3457777777788889999999999999888876544333321000               


Q ss_pred             HhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhcC
Q psy12000        189 NQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNLE  234 (507)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~~  234 (507)
                       .+....     ......++.+...+...+..|++..|...+..+.
T Consensus       142 -l~~~~~-----~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~  181 (450)
T d1qsaa1         142 -LFSVWR-----ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP  181 (450)
T ss_dssp             -HHHHHH-----HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             -HHHHHH-----hcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC
Confidence             011110     0112234444555666777888888888776553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.24  Score=46.58  Aligned_cols=403  Identities=8%  Similarity=-0.037  Sum_probs=199.2

Q ss_pred             hhhHHHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChh
Q psy12000          8 TDAWLGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEK   87 (507)
Q Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (507)
                      ..+..+...+..|++..+.+....+ +..|=-+-+-+............++...++++.++.+...++.-.....+...+
T Consensus         8 ~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~   86 (450)
T d1qsaa1           8 SRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRE   86 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence            4567788999999999888877765 445532222222222223455778888888888887765532211111111112


Q ss_pred             HHHHHHHHHh---hcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchh---H---------------HHHHHHHHHHh
Q psy12000         88 SLMEYHQKLE---DSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLL---A---------------LNVYGAMCYYK  146 (507)
Q Consensus        88 ~~~~~~~~l~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~---------------~~~~la~~~~~  146 (507)
                      ....+.....   .+++.....+......|+-++|......+-...+..+   +               .+.......+.
T Consensus        87 ~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~  166 (450)
T d1qsaa1          87 DWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK  166 (450)
T ss_dssp             CHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            2222222222   2233355677888889999999988887765543222   2               12223333444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChh-HhHHHHHHHHHhhccHHH
Q psy12000        147 LDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIP-ESRLNLVIYHLKQEEHQE  225 (507)
Q Consensus       147 ~g~~~~A~~~~~~~l~~~p~~~~a~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  225 (507)
                      .|++..|...+..   ..++..........+  . .+........     ....   .... ......+..-+...+.+.
T Consensus       167 ~~~~~~a~~l~~~---l~~~~~~~~~a~~~l--~-~~p~~~~~~~-----~~~~---~~~~~~~~~~~~l~rla~~d~~~  232 (450)
T d1qsaa1         167 AGNTGLVTVLAGQ---MPADYQTIASAIISL--A-NNPNTVLTFA-----RTTG---ATDFTRQMAAVAFASVARQDAEN  232 (450)
T ss_dssp             TTCHHHHHHHHHT---CCGGGHHHHHHHHHH--H-HCGGGHHHHH-----HHSC---CCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cCChhhHHHHHhh---CChhHHHHHHHHHHH--H-hChHhHHHHH-----hcCC---CChhhhHHHHHHHHHHhccChhH
Confidence            4555444443221   111111111100000  0 0111111100     0111   1111 112233444455678888


Q ss_pred             HHHHHHhc---CCCChHHHHH-HHHHHHHhhhccCcHHHHHHHHHHHHHhCCCcccccchhhhhHHHHHHHhhcCHHHHH
Q psy12000        226 AFDLIKNL---EPSVPQEYIL-KAVVQVTIGQDTGSREMVKAAQALFQLVGSSQSECDTVPGRQCMASSFFLLRSFKDVI  301 (507)
Q Consensus       226 A~~~l~~~---~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~Ai  301 (507)
                      |...+..+   .+.++..... ...+...+.....    ...+...+........   ......+++......+++..+.
T Consensus       233 a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~a~~~~~~~~~~~~---~~~~~~w~~~~al~~~~~~~~~  305 (450)
T d1qsaa1         233 ARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV----TDEQAKWRDDAIMRSQ---STSLIERRVRMALGTGDRRGLN  305 (450)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC----CHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCc----hHHHHHHHHhhccccc---chHHHHHHHHHHHHcCChHHHH
Confidence            88877654   2333333221 1111111111111    1223333322211111   1111223444456778999999


Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhh--hhcccCccchhhhHHHHHHHHcCC-
Q psy12000        302 LYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYIS--HLTKCSPSRAKTRLSFHLSHKLGD-  378 (507)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~-  378 (507)
                      ..++.+.......+.+.|++|.++...|+.++|...|..+-..  .+-+.+++  .||.-+.....         .... 
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--~~fYG~LAa~~Lg~~~~~~~~---------~~~~~  374 (450)
T d1qsaa1         306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RGFYPMVAAQRIGEEYELKID---------KAPQN  374 (450)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSHHHHHHHHHTTCCCCCCCC---------CCCSC
T ss_pred             HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--CChHHHHHHHHcCCCCCCCcC---------CCCcc
Confidence            8888765444445678899999999999999999999988642  22222222  12222110000         0000 


Q ss_pred             cHHHHHHHHHhhhcHHHHHHHHHHHHhHhhHHHHHHHHHHHhhcCCchhhhHHHHHhhccccccchhHHHHHHHH
Q psy12000        379 EKSLMEYHQKLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMY  453 (507)
Q Consensus       379 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~~l~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~~  453 (507)
                      ....+.      ..+  .+.-+...+..|...+|...+..++...+  +.-...+|....+.|.++.|+....++
T Consensus       375 ~~~~~~------~~~--~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         375 VDSALT------QGP--EMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCHHH------HSH--HHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhhh------cCh--HHHHHHHHHHcCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            001110      000  01112233455889999999888876433  223345677788999999999776655

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=0.28  Score=43.86  Aligned_cols=180  Identities=18%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             HHHHHHhhcCHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhccHHHHHHHHHhCCCCccccchHHHHHHhcCChhHHHH
Q psy12000         12 LGYCHFHLGQYKQALGIYETLRHLPNPPEDTEFNIASCYFYLGMYLQANQILEKVPPSRAKTRLSFHLSHKLGDEKSLME   91 (507)
Q Consensus        12 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (507)
                      +|...+..|.|+.|...|...        .-+-.+..++.++++++.|...+.+............ ..... .+.....
T Consensus        20 i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~-~l~~~-~e~~la~   89 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF-ACVDG-KEFRLAQ   89 (336)
T ss_dssp             ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHH-HHHHT-TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHH-HHHhC-cHHHHHH
Confidence            688889999999999999754        2245777889999999999999887643221111110 00111 1111111


Q ss_pred             HHH-HHhhcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12000         92 YHQ-KLEDSLEEQLCLASIHFLRCHYQEAIDIYKRILLDHKDLLALNVYGAMCYYKLDYYDVSQEQVAMYLAQKPTSRIA  170 (507)
Q Consensus        92 ~~~-~l~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a  170 (507)
                      ... .+...++....+...|...|.+++.+.+++.++...+.+...+..++.+|.+.+. ++=.+.+++.-  +.     
T Consensus        90 i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s--~~-----  161 (336)
T d1b89a_          90 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFW--SR-----  161 (336)
T ss_dssp             HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS--TT-----
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhcc--cc-----
Confidence            100 0112233455566778889999999999999988888888888899998887643 33333333220  11     


Q ss_pred             HHHHhhhhhhccChHHHHHhhHHHHHhhCCCCCCChhHhHHHHHHHHHhhccHHHHHHHHHhc
Q psy12000        171 LNLKACNTYKLFTSRAAENQLKPILVSILPPLIDVIPESRLNLVIYHLKQEEHQEAFDLIKNL  233 (507)
Q Consensus       171 ~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~l~~~  233 (507)
                                 .+...+....+..             .-|-.++.+|.+.|++++|+..+..-
T Consensus       162 -----------y~~~k~~~~c~~~-------------~l~~elv~Ly~~~~~~~~A~~~~i~~  200 (336)
T d1b89a_         162 -----------VNIPKVLRAAEQA-------------HLWAELVFLYDKYEEYDNAIITMMNH  200 (336)
T ss_dssp             -----------SCHHHHHHHHHTT-------------TCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -----------CCHHHHHHHHHHc-------------CChHHHHHHHHhcCCHHHHHHHHHHc
Confidence                       1222232222111             11334667888899999998877654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.71  E-value=3  Score=36.76  Aligned_cols=239  Identities=12%  Similarity=-0.017  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHhCC-CcccccchhhhhHHH
Q psy12000        210 RLNLVIYHLKQEEHQEAFDLIKNLEPSVPQEYILKAVVQVTIGQDTGSREMVKAAQALFQLVGS-SQSECDTVPGRQCMA  288 (507)
Q Consensus       210 ~~~l~~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~la  288 (507)
                      +-.++.++...++++.|.+.+.+..  ++..|...........+       ...+.    .+.. ....++.+.   .+.
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e-------~~la~----i~~~~~~~~~d~l~---~~v  106 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE-------FRLAQ----MCGLHIVVHADELE---ELI  106 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC-------HHHHH----HTTTTTTTCHHHHH---HHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH-------HHHHH----HHHHHhhcCHHHHH---HHH
Confidence            3445667788899999998887653  33333322222221110       01110    0000 011222221   245


Q ss_pred             HHHHhhcCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHhhCCHHHHHHHHHhhcccCCCchhhhhhhhcccCccchhhhH
Q psy12000        289 SSFFLLRSFKDVILYLSSIKSYYTSDDSFNFNFAQAKCALGQYKEAEEMFLLVQNEGLKNDYVYISHLTKCSPSRAKTRL  368 (507)
Q Consensus       289 ~~~~~~~~~~~Ai~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  368 (507)
                      ..|...|.+++.+.++..+....+.+..++..++.+|.+.+ .++-+++++..-+.. +-..+. .   .| ...+-+.+
T Consensus       107 ~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y-~~~k~~-~---~c-~~~~l~~e  179 (336)
T d1b89a_         107 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRV-NIPKVL-R---AA-EQAHLWAE  179 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTS-CHHHHH-H---HH-HTTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccC-CHHHHH-H---HH-HHcCChHH
Confidence            67888999999999999887766777777777888887754 566666665532211 111110 0   11 12233566


Q ss_pred             HHHHHHHcCCcHHHHHHHHHhhhcHHHHHHHHHHHHhHh---hHHHHHHHHHHHhhcCCchhhhH----------HHHHh
Q psy12000        369 SFHLSHKLGDEKSLMEYHQKLEDSLEEQLCLASIHFLRC---HYQEAIDIYKRILLDHKDLLALN----------VYGAM  435 (507)
Q Consensus       369 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~~l~~~p~~~~~~----------~~la~  435 (507)
                      +..+|.+.+..+++...+-.-.....+....-.++...+   .+-+++..|   ++.+|+...-.          ..+..
T Consensus       180 lv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y---L~~~p~~i~~lL~~v~~~~d~~r~V~  256 (336)
T d1b89a_         180 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY---LEFKPLLLNDLLMVLSPRLDHTRAVN  256 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH---HHHCGGGHHHHHHHHGGGCCHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHH---HHcCHHHHHHHHHHhccCCCHHHHHH
Confidence            777777777777655443221110000111111122222   233333333   34455543211          12233


Q ss_pred             hccccccchhHHHHHHHHHhcCCCchhhhhHHHhhhhhcCC
Q psy12000        436 CYYKLDYYDVSQEQVAMYLAQKPTSRIALNLKACNTYKLFT  476 (507)
Q Consensus       436 ~y~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~  476 (507)
                      ...+.++..-....++.+.+.+  +....+.+..++....+
T Consensus       257 ~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d  295 (336)
T d1b89a_         257 YFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEED  295 (336)
T ss_dssp             HHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcch
Confidence            4456677777777777765533  45567777788777665