Psyllid ID: psy12008

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MIFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSHS
cccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHccccccccccccccccccccccEEEEEccccEEccccccccccccccEEEEEEEEccccccccEEEEEEcccccccccccHHHHHHccHHHHHcccccHHHHHccccccEEEHHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEEcccccHHHHHHHccHHHHccEEEEEEEccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHcccccccccccccccccccccEEEEEEccccEEcccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHcEEcccc
ccccccEccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHccccEEEEEEcccccccccEEEEEEccccEEccccccccccccEEEEEEEEEEcccccHHHHHHHHccccccHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEcccccccHHHHHHHccHHHHHcEEEEEEcccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHccccEEEEEcccccccccccEEEEEccccEEcccccccccccHHEEEEEEEccccEEcccHHHHHHHHcccccccEEEEEEEEEEEEEcc
mifkndvrgkvslksgsfvydvqlsgvdnwkptSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNkykleqipsivqqSIDGKVIVYRIKdhidisrgpmmsntnhlgRCTIAAAQQVETDAGLfyrfqgvalpksikgfipswmnmglssieagksDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVtykglpedAELImnknlstpyncaQHMSEMLCDRSVLALIDGvklwdmhrplesdcelqllhfydsdpyhsnrtfwRSCSIMLGSVlsnafkdnvevqlhsfpspnvksgsfvydvqlsgvdnwkptSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNkykleqipsivqqSIDGKVIVYRIKdhidisrgpmmsntnhlgrcTIAAVSFRfflsppscllssnattcchsLSIYIYVDYVIVSHS
mifkndvrgkvslksgsfvydvqlsgvdnwkpTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYkleqipsivqqsidgKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKrqqnavgriekinvTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHsfpspnvksgSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYkleqipsivqqsidgKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSHS
MIFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVsfrfflsppscllssNATTCCHSLSIYIYVDYVIVSHS
************LKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIV***
MIFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIE*GKS*IFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINV**********LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSH*
********GKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSHS
MIFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSH*
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MIFKNDVRGKVSLKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAAQQVETDAGLFYRFQGVALPKSIKGFIPSWMNMGLSSIEAGKSDIFLVIRLGQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCLLSSNATTCCHSLSIYIYVDYVIVSHS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
Q9VUJ0333 39S ribosomal protein L39 yes N/A 0.532 0.732 0.581 9e-84
Q9NYK5338 39S ribosomal protein L39 yes N/A 0.532 0.721 0.412 1e-51
Q9JKF7336 39S ribosomal protein L39 yes N/A 0.532 0.726 0.408 1e-51
Q54J66 710 Probable threonine--tRNA yes N/A 0.451 0.291 0.337 6e-25
A5IJ45 640 Threonine--tRNA ligase OS yes N/A 0.414 0.296 0.306 4e-17
B1L7W6 640 Threonine--tRNA ligase OS yes N/A 0.414 0.296 0.302 7e-17
P87144 703 Threonine--tRNA ligase, c yes N/A 0.497 0.324 0.296 1e-16
Q9WZJ9 640 Threonine--tRNA ligase OS yes N/A 0.414 0.296 0.302 1e-16
O04630 709 Threonine--tRNA ligase, m yes N/A 0.397 0.256 0.331 5e-16
P26639 723 Threonine--tRNA ligase, c no N/A 0.401 0.254 0.292 6e-16
>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster GN=mRpL39 PE=1 SV=2 Back     alignment and function desciption
 Score =  311 bits (796), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 189/246 (76%), Gaps = 2/246 (0%)

Query: 175 SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 234
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 354
           AFK    +QLHSFP PN+KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  E
Sbjct: 150 AFKPEANLQLHSFPGPNIKSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIE 208

Query: 355 RLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR 414
           RL + QDLA+ +F+ +KYK EQ+PSI QQ+ +G+V +YR+ DHIDISRGPM+++T+ LG+
Sbjct: 209 RLDVQQDLAQEMFKDSKYKSEQLPSISQQT-NGRVTLYRLGDHIDISRGPMVASTSFLGK 267

Query: 415 CTIAAV 420
           C I+A 
Sbjct: 268 CVISAA 273

Drosophila melanogaster (taxid: 7227)
>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39 PE=1 SV=3 Back     alignment and function description
>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39 PE=2 SV=4 Back     alignment and function description
>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1 Back     alignment and function description
>sp|A5IJ45|SYT_THEP1 Threonine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1 Back     alignment and function description
>sp|B1L7W6|SYT_THESQ Threonine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3 SV=1 Back     alignment and function description
>sp|P87144|SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ths1 PE=3 SV=1 Back     alignment and function description
>sp|Q9WZJ9|SYT_THEMA Threonine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=thrS PE=3 SV=1 Back     alignment and function description
>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3 Back     alignment and function description
>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
193652458341 PREDICTED: 39S ribosomal protein L39, mi 0.534 0.718 0.626 3e-88
195327660333 GM24519 [Drosophila sechellia] gi|195590 0.532 0.732 0.581 1e-82
17946007310 RE50565p [Drosophila melanogaster] 0.561 0.829 0.565 4e-82
194751137333 GF10636 [Drosophila ananassae] gi|190625 0.532 0.732 0.589 6e-82
24664387333 mitochondrial ribosomal protein L39 [Dro 0.532 0.732 0.581 6e-82
194871047333 GG13700 [Drosophila erecta] gi|190654558 0.532 0.732 0.569 1e-81
195494429333 GE19994 [Drosophila yakuba] gi|194180937 0.532 0.732 0.573 2e-81
289741267329 mitochondrial ribosomal protein L39 [Glo 0.532 0.741 0.577 3e-81
195378436332 GJ13727 [Drosophila virilis] gi|19415514 0.532 0.734 0.565 9e-81
195129623332 GI13938 [Drosophila mojavensis] gi|19392 0.517 0.713 0.589 2e-80
>gi|193652458|ref|XP_001949601.1| PREDICTED: 39S ribosomal protein L39, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 194/246 (78%), Gaps = 1/246 (0%)

Query: 176 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEM 235
           + IV  QN++F+ E KRQ+ AVGRIEKI V Y G+PE+  L MNK +STP++CAQH+SEM
Sbjct: 32  TEIVAYQNNLFDNEQKRQREAVGRIEKITVKYIGVPENVTLSMNKGISTPFHCAQHISEM 91

Query: 236 LCDRSVLALIDGVKLWDMHRPLESDCELQLLHF-YDSDPYHSNRTFWRSCSIMLGSVLSN 294
           L  RS LALID   LWDMHRPLESDCEL  +H  Y  DPYH NR +WRSCS++LG+V+S 
Sbjct: 92  LVKRSGLALIDETHLWDMHRPLESDCELTFMHAQYLPDPYHFNRAYWRSCSLILGAVISK 151

Query: 295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 354
           AFK +++  LHSFPSPNVKSGSFVYDV+LS +  W PT  ELR+LSA MVK A ++  FE
Sbjct: 152 AFKTDIQPTLHSFPSPNVKSGSFVYDVELSNLPEWAPTENELRILSANMVKFAQKSYKFE 211

Query: 355 RLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR 414
           RL++S++LA  +F+ NK+K EQ+P+I QQSID KV++YRI DHI+ISRGPM+ NT+ LGR
Sbjct: 212 RLAVSEELALDIFQENKFKKEQVPNIAQQSIDKKVVLYRIDDHIEISRGPMIGNTDLLGR 271

Query: 415 CTIAAV 420
           C+I AV
Sbjct: 272 CSITAV 277

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195327660|ref|XP_002030536.1| GM24519 [Drosophila sechellia] gi|195590346|ref|XP_002084907.1| GD12590 [Drosophila simulans] gi|194119479|gb|EDW41522.1| GM24519 [Drosophila sechellia] gi|194196916|gb|EDX10492.1| GD12590 [Drosophila simulans] Back     alignment and taxonomy information
>gi|17946007|gb|AAL49047.1| RE50565p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194751137|ref|XP_001957883.1| GF10636 [Drosophila ananassae] gi|190625165|gb|EDV40689.1| GF10636 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|24664387|ref|NP_524075.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|27923994|sp|Q9VUJ0.2|RM39_DROME RecName: Full=39S ribosomal protein L39, mitochondrial; Short=MRP-L39; AltName: Full=MRP-L5 gi|23093441|gb|AAF49686.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|346716412|gb|AEO46465.1| RE54042p1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194871047|ref|XP_001972775.1| GG13700 [Drosophila erecta] gi|190654558|gb|EDV51801.1| GG13700 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195494429|ref|XP_002094836.1| GE19994 [Drosophila yakuba] gi|194180937|gb|EDW94548.1| GE19994 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|289741267|gb|ADD19381.1| mitochondrial ribosomal protein L39 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|195378436|ref|XP_002047990.1| GJ13727 [Drosophila virilis] gi|194155148|gb|EDW70332.1| GJ13727 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195129623|ref|XP_002009255.1| GI13938 [Drosophila mojavensis] gi|193920864|gb|EDW19731.1| GI13938 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
FB|FBgn0036462333 mRpL39 "mitochondrial ribosoma 0.530 0.729 0.583 3.1e-76
UNIPROTKB|F1NDS2348 MRPL39 "Uncharacterized protei 0.532 0.701 0.42 6.5e-51
UNIPROTKB|F1SHP6337 LOC100521866 "Uncharacterized 0.539 0.732 0.410 1.2e-49
UNIPROTKB|Q9NYK5338 MRPL39 "39S ribosomal protein 0.539 0.730 0.414 1.5e-49
MGI|MGI:1351620336 Mrpl39 "mitochondrial ribosoma 0.532 0.726 0.408 2e-49
UNIPROTKB|F1P8E4335 MRPL39 "Uncharacterized protei 0.532 0.728 0.408 2.5e-49
UNIPROTKB|Q05B74335 MRPL39 "Mitochondrial ribosoma 0.517 0.707 0.406 2.3e-48
UNIPROTKB|C9JG87297 MRPL39 "39S ribosomal protein 0.519 0.801 0.396 1.2e-44
ZFIN|ZDB-GENE-030131-6520342 mrpl39 "mitochondrial ribosoma 0.517 0.692 0.391 1.7e-43
UNIPROTKB|I3LHX5245 LOC100621532 "Uncharacterized 0.410 0.767 0.394 1.1e-34
FB|FBgn0036462 mRpL39 "mitochondrial ribosomal protein L39" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 143/245 (58%), Positives = 189/245 (77%)

Query:   175 SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 234
             SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct:    30 SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query:   235 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 294
               C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct:    90 GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query:   295 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 354
             AFK    +QLHSFP PN+KSGSFV+D+ L    NW+P   E+R LSAEMVKLA + +  E
Sbjct:   150 AFKPEANLQLHSFPGPNIKSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIE 208

Query:   355 RLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGR 414
             RL + QDLA+ +F+ +KYK EQ+PSI QQ+ +G+V +YR+ DHIDISRGPM+++T+ LG+
Sbjct:   209 RLDVQQDLAQEMFKDSKYKSEQLPSISQQT-NGRVTLYRLGDHIDISRGPMVASTSFLGK 267

Query:   415 CTIAA 419
             C I+A
Sbjct:   268 CVISA 272
GO:0006435 "threonyl-tRNA aminoacylation" evidence=ISS
GO:0004829 "threonine-tRNA ligase activity" evidence=ISS;NAS
GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS
GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS
GO:0006412 "translation" evidence=ISS;NAS
GO:0000166 "nucleotide binding" evidence=IEA
UNIPROTKB|F1NDS2 MRPL39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHP6 LOC100521866 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NYK5 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1351620 Mrpl39 "mitochondrial ribosomal protein L39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8E4 MRPL39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B74 MRPL39 "Mitochondrial ribosomal protein L39" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C9JG87 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6520 mrpl39 "mitochondrial ribosomal protein L39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHX5 LOC100621532 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VUJ0RM39_DROMENo assigned EC number0.58130.53270.7327yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
PLN02908 686 PLN02908, PLN02908, threonyl-tRNA synthetase 1e-27
PRK00413 638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 2e-14
cd0166761 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threony 7e-14
PRK12305 575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 5e-11
PRK12305 575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 3e-10
PLN02908686 PLN02908, PLN02908, threonyl-tRNA synthetase 4e-08
PRK00413 638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 3e-07
PRK12444 639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 1e-06
PRK12444639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 4e-06
COG0441 589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 6e-06
COG0441 589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 4e-05
pfam0282460 pfam02824, TGS, TGS domain 1e-04
TIGR00418 563 TIGR00418, thrS, threonyl-tRNA synthetase 2e-04
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase Back     alignment and domain information 
 Score =  115 bits (290), Expect = 1e-27
 Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 22/237 (9%)

Query: 179 VQKQNDIFNKEFKRQQNAVGRI--EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 236
           ++K+ ++F K   RQ   +     + I VT   LP+ A     K ++TP + A+ +S+ L
Sbjct: 26  IKKRIELFEKIQARQLARLESAGGDPIKVT---LPDGAVKDGKKWVTTPMDIAKEISKGL 82

Query: 237 CDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 296
            + +++A +DGV LWDM RPLE DC+L+L  F D +      TFW S + +LG  L   +
Sbjct: 83  ANSALIAQVDGV-LWDMTRPLEGDCKLKLFKFDDDE---GRDTFWHSSAHILGEALELEY 138

Query: 297 KDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 356
                 +L   P      G F YD       +      + + + A   K   E  PFER+
Sbjct: 139 G----CKLCIGPCTTRGEG-FYYDAFYG---DRTLNEEDFKPIEARAEKAVKEKQPFERI 190

Query: 357 SISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVI-VYRIKDHIDISRGPMMSNTNHL 412
            ++++ A  +F  NK+K+E    I+    +   I VYR    +D+ RGP + NT+ +
Sbjct: 191 EVTREEALEMFSENKFKVE----IINDLPEDATITVYRCGPLVDLCRGPHIPNTSFV 243

Length = 686
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|217243 pfam02824, TGS, TGS domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
PLN02908 686 threonyl-tRNA synthetase 100.0
PRK12444 639 threonyl-tRNA synthetase; Reviewed 100.0
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 100.0
PLN02908686 threonyl-tRNA synthetase 99.98
PLN02837614 threonine-tRNA ligase 99.97
PRK12444639 threonyl-tRNA synthetase; Reviewed 99.96
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.96
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.95
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.95
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 99.94
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 99.94
PLN02837 614 threonine-tRNA ligase 99.94
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.93
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.91
KOG1637|consensus 560 99.89
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.79
PRK01584594 alanyl-tRNA synthetase; Provisional 99.78
KOG1637|consensus560 99.7
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 99.69
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 99.67
PLN02900 936 alanyl-tRNA synthetase 99.65
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 99.64
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 99.64
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 99.6
PRK01584594 alanyl-tRNA synthetase; Provisional 99.57
TIGR00344851 alaS alanine--tRNA ligase. The model describes ala 99.5
PLN02961223 alanine-tRNA ligase 99.49
PRK00252865 alaS alanyl-tRNA synthetase; Reviewed 99.48
PRK13902900 alaS alanyl-tRNA synthetase; Provisional 99.43
COG0013879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 99.41
TIGR03683902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 99.41
PLN02900936 alanyl-tRNA synthetase 99.41
COG2872241 Predicted metal-dependent hydrolases related to al 99.4
KOG0188|consensus 895 99.01
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 98.89
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 98.89
COG2872241 Predicted metal-dependent hydrolases related to al 98.86
PLN02961223 alanine-tRNA ligase 98.82
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 98.75
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 98.67
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 98.56
KOG2105|consensus 415 98.48
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 98.42
KOG0188|consensus895 98.4
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 98.23
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 97.7
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 97.45
KOG2105|consensus415 96.39
COG0317701 SpoT Guanosine polyphosphate pyrophosphohydrolases 95.28
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 94.95
PRK0744070 hypothetical protein; Provisional 94.19
PRK0836470 sulfur carrier protein ThiS; Provisional 94.02
PRK0565966 sulfur carrier protein ThiS; Validated 93.77
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 93.18
PRK0769667 sulfur carrier protein ThiS; Provisional 92.92
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 92.91
COG210468 ThiS Sulfur transfer protein involved in thiamine 92.56
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 92.54
PRK0694465 sulfur carrier protein ThiS; Provisional 92.28
PRK0805366 sulfur carrier protein ThiS; Provisional 91.68
PRK0643767 hypothetical protein; Provisional 91.47
PRK0648865 sulfur carrier protein ThiS; Validated 91.21
PRK0608384 sulfur carrier protein ThiS; Provisional 90.65
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 87.23
PRK0586365 sulfur carrier protein ThiS; Provisional 84.12
PLN0279982 Molybdopterin synthase sulfur carrier subunit 82.53
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-46  Score=409.75  Aligned_cols=239  Identities=30%  Similarity=0.516  Sum_probs=217.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcC--cceeEEEEeeCCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEee
Q psy12008        175 SSNIVQKQNDIFNKEFKRQQNAVGR--IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD  252 (458)
Q Consensus       175 ~~~~~~~~~~l~e~l~~~q~~~i~~--~~~i~v~~~~~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~d  252 (458)
                      .|.++.+|+++|++++++|.++++.  .++|+|++   +||++.+++++.|||.+||++++..++..+++|+|||+ +||
T Consensus        22 ~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~---~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~-l~d   97 (686)
T PLN02908         22 LSAVIKKRIELFEKIQARQLARLESAGGDPIKVTL---PDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGV-LWD   97 (686)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhccCCceEEEe---CCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCE-Eee
Confidence            4579999999999999999999984  46677775   67889999987789999999999999999999999999 999


Q ss_pred             cccccccccccceecccCCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccC-CcEEEEEecCCCCCCCC
Q psy12008        253 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKS-GSFVYDVQLSGVDNWKP  331 (458)
Q Consensus       253 L~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~-ggfy~d~~~~~~~~~~l  331 (458)
                      |++|+++||+|+|++|++++|   +++||||++|||++|++++|+  +++.    .||+++. +|||||+.++   +.++
T Consensus        98 L~~~l~~d~~le~l~~~~~eg---~~~y~hS~ahlL~~A~~~~~~--~~l~----ig~~i~~~~Gfy~d~~~~---~~~~  165 (686)
T PLN02908         98 MTRPLEGDCKLKLFKFDDDEG---RDTFWHSSAHILGEALELEYG--CKLC----IGPCTTRGEGFYYDAFYG---DRTL  165 (686)
T ss_pred             cCccccCCCeeEEeccccHHH---HHHHHHHHHHHHHHHHHHHhC--CeEE----ecCccccCCcEEEEeecC---CCCC
Confidence            999999999999999999999   899999999999999999995  4554    4777861 4899999865   1479


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhhCcccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCc
Q psy12008        332 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNH  411 (458)
Q Consensus       332 t~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~~~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~  411 (458)
                      |++|+++|+++|+++|++++||++..|+++||+++|+++++|+++++.+++   ++.|++|+||+|+|+|+||||||||+
T Consensus       166 t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~---~~~v~vY~~g~~~D~c~Gphv~sTg~  242 (686)
T PLN02908        166 NEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE---DATITVYRCGPLVDLCRGPHIPNTSF  242 (686)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC---CCeeEEEEECCEEEecCCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999987653   56799999999999999999999999


Q ss_pred             cCcEEEEeecceEEeeCCCcc
Q psy12008        412 LGRCTIAAVSFRFFLSPPSCL  432 (458)
Q Consensus       412 I~~f~l~~~~~g~~l~~p~~~  432 (458)
                      ||.|+|+++++|||||..+..
T Consensus       243 ik~f~l~~~~~~~~lg~~~~~  263 (686)
T PLN02908        243 VKAFACLKASSAYWRGDVDRE  263 (686)
T ss_pred             cceeEEEEecceEEcCCCcch
Confidence            999999999999999987653

>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
1wwt_A88 Solution Structure Of The Tgs Domain From Human Thr 7e-07
1nyq_A 645 Structure Of Staphylococcus Aureus Threonyl-Trna Sy 2e-06
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl- Trna Synthetase Length = 88 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 269
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE DC L+LL F 
Sbjct: 16  LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFE 74
Query: 270 DSD 272
           D +
Sbjct: 75  DEE 77
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 4e-19
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 4e-11
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 8e-16
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 7e-08
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 1e-14
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 2e-07
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
 Score = 89.2 bits (222), Expect = 4e-19
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 23/214 (10%)

Query: 201 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 260
           E+IN+     P+  +   +K  +T  + AQ +S  L  ++V    +G +L D+ +PLE+D
Sbjct: 2   EQINIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETD 56

Query: 261 CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYD 320
             ++++     +   +      S + ++   +   + +   V+    P   ++ G F YD
Sbjct: 57  GSIEIVTPGSEE---ALEVLRHSTAHLMAHAIKRLYGN---VKFGVGPV--IEGG-FYYD 107

Query: 321 VQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPS 379
                 D  +  +S +   +   M ++  E +  ER  +S+D A+ LF +++YKLE I +
Sbjct: 108 F-----DIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA 162

Query: 380 IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLG 413
           I +   D  V +Y   D  D+ RG  + +T  + 
Sbjct: 163 IPE---DENVTLYSQGDFTDLCRGVHVPSTAKIK 193
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 100.0
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.97
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.96
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 99.95
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.95
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 99.86
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 99.83
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.83
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 99.8
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.78
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 99.63
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 99.63
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 99.58
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.49
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 99.37
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 98.67
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 98.44
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 92.89
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 92.6
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 92.44
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 91.7
2cu3_A64 Unknown function protein; thermus thermophilus HB8 90.68
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 90.57
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 90.36
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 86.2
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 85.5
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 84.43
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-46  Score=356.29  Aligned_cols=205  Identities=20%  Similarity=0.349  Sum_probs=189.7

Q ss_pred             CCCCcEEEcccCCCCHHHHHhhccccccCceEEEEECCeEEeecccccccccccceecccCCCCcchhhHHHhhHHHHHH
Q psy12008        210 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG  289 (458)
Q Consensus       210 ~~~g~~~~~~~g~tT~~~iak~i~~~l~~~~v~a~vng~~~~dL~~pl~~d~~ve~l~~~~~~g~~~~~~y~hS~~~lL~  289 (458)
                      .++|+.++++.| +|+.|+|+.++..+++.+++|+|||+ ++||++|+..+|.|++|++++++|   +++||||++|||+
T Consensus         6 ~p~G~~~~~~~g-~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~~~~ve~it~~~~~g---~~~~~HS~~HlL~   80 (224)
T 1tke_A            6 LPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLG   80 (224)
T ss_dssp             CTTSCEEECSSC-BCHHHHHHHHCHHHHHHCCEEEETTE-EEETTCCBCSCEEEEEECTTSHHH---HHHHHHHHHHHHH
T ss_pred             eCCCCEEEecCC-CCHHHHHHHHhhhcccceEEEEECCE-EeccceEcCCCCeEEEEecCchhH---HHHHHHHHHHHHH
Confidence            468999999999 49999999999888899999999999 999999999999999999999999   8999999999999


Q ss_pred             HHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhh
Q psy12008        290 SVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH  369 (458)
Q Consensus       290 ~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~~~pi~~~~vs~eeA~~~F~~  369 (458)
                      +|++++||+ .++.    .|+++++ ||||||+.+    .++|++|+++||++|+++|++|+||++.+++++||+++|+.
T Consensus        81 ~A~~~~~~~-~~~~----~g~~~~~-g~y~d~~~~----~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~  150 (224)
T 1tke_A           81 HAIKQLWPH-TKMA----IGPVIDN-GFYYDVDLD----RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFAN  150 (224)
T ss_dssp             HHHHHHSTT-CEEC----CCCEETT-EEEEEEECS----SCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHH
T ss_pred             HHHHHHCCC-cEEE----ECCccCC-eEEEEEeCC----CCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHH
Confidence            999999997 5653    4777775 899999976    68999999999999999999999999999999999999987


Q ss_pred             --Cccccccccc-ccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEeeCCCcc
Q psy12008        370 --NKYKLEQIPS-IVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLSPPSCL  432 (458)
Q Consensus       370 --~~~K~~ll~~-~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~~p~~~  432 (458)
                        +++|++|++. ++.   ++.|++|+||+|+|+|+||||||||+||.|+|+++++|||+++.+.+
T Consensus       151 ~~~~~k~~l~~~~~~~---~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~  213 (224)
T 1tke_A          151 RGESYKVSILDENIAH---DDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNK  213 (224)
T ss_dssp             TTCHHHHHHHHHHSCT---TCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSC
T ss_pred             cCCchHHHHhccccCC---CCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCc
Confidence              7899999986 653   67899999999999999999999999999999999999999997654
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 2e-12
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 9e-12
d1tkea2162 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR 3e-05
d1nyra259 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS 5e-05
d1tkea162 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS 0.001
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 29  NWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQSIDG 88
           +   +S +   +   M ++  E +  ER  +S+D A+ LF +++YKLE I +I +   D 
Sbjct: 49  DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPE---DE 105

Query: 89  KVIVYRIKDHIDISRGPMMSNTNHLG--RCTIAAAQQVETDAG--LFYRFQGVALPKSIK 144
            V +Y   D  D+ RG  + +T  +   +    A      D+   +  R  G A     +
Sbjct: 106 NVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKE 165
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 100.0
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 100.0
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.98
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.96
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.86
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.67
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.58
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.12
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.08
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 98.93
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 92.17
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 88.25
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 87.45
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 81.21
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-35  Score=263.07  Aligned_cols=148  Identities=20%  Similarity=0.328  Sum_probs=131.0

Q ss_pred             CCCCcchhhHHHhhHHHHHHHHHHHHcCCCcEEEEeecCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12008        270 DSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYE  349 (458)
Q Consensus       270 ~~~g~~~~~~y~hS~~~lL~~A~~~~f~~~~~v~v~~~~g~~i~~ggfy~d~~~~~~~~~~lt~edl~~Ie~~m~~iI~~  349 (458)
                      +++|   +++||||++|||++|++++||+ +++.    .||++++ ||||||+.+    .+++++|+.+|+++|+++|++
T Consensus         2 d~eg---l~v~rhS~ahlLa~Av~~l~p~-~kl~----~g~~~~~-GfyyD~~~~----~~~~~edl~~ie~~m~~ii~~   68 (162)
T d1tkea2           2 DEEG---LEIIRHSCAHLLGHAIKQLWPH-TKMA----IGPVIDN-GFYYDVDLD----RTLTQEDVEALEKRMHELAEK   68 (162)
T ss_dssp             SHHH---HHHHHHHHHHHHHHHHHHHSTT-CEEC----CCCEETT-EEEEEEECS----SCCCHHHHHHHHHHHHHHHTT
T ss_pred             CHHH---HHHHHHHHHHHHHHHHHHHCCC-cEEE----eccccCC-eEEEEeecc----CCCCHHHHHHHHHHHHHHHHh
Confidence            3556   8999999999999999999998 6764    5888875 899999976    789999999999999999999


Q ss_pred             CCCeEEEEeCHHHHHHHhhhC--cccccccccccccCCCCeEEEEEECCeEeeeCCCCccCcCccCcEEEEeecceEEee
Q psy12008        350 AVPFERLSISQDLAEALFEHN--KYKLEQIPSIVQQSIDGKVIVYRIKDHIDISRGPMMSNTNHLGRCTIAAVSFRFFLS  427 (458)
Q Consensus       350 ~~pi~~~~vs~eeA~~~F~~~--~~K~~ll~~~~~~~~~~~v~iy~~g~~~D~c~Gphv~~Tg~I~~f~l~~~~~g~~l~  427 (458)
                      +.||++..+++++|+++|..+  ++|..++....+  .+..+++|+||+|+|+|+||||||||.|+.|+|++++++||+|
T Consensus        69 ~~~~~~~~~s~~~a~~~~~~~~~~~k~~~~~~~~~--~~~~~~~y~~g~~~dlc~Gphv~sTg~ik~FkL~~vsgaYw~g  146 (162)
T d1tkea2          69 NYDVIKKKVSWHEARETFANRGESYKVSILDENIA--HDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRG  146 (162)
T ss_dssp             CCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSC--TTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGG
T ss_pred             cCCceEEEechHHHHHHHHHhhcchhhheeecccc--ccccceeeccCceEeecCCCccccCcccceEEEEEechhhcCC
Confidence            999999999999999999985  456666654332  2678999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q psy12008        428 PPSCL  432 (458)
Q Consensus       428 ~p~~~  432 (458)
                      +.+.+
T Consensus       147 d~~n~  151 (162)
T d1tkea2         147 DSNNK  151 (162)
T ss_dssp             CTTSC
T ss_pred             CCCCc
Confidence            87664
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure