Psyllid ID: psy1201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI
Secondary Structure (PSIPRED)
ccEEEEEHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MNYDVIAYGSIWMHGLAVCLCFLVSLslypsitslvkstspvhtewtdkyftPVIAFLVFSVCDYLGRFIAgylqwprnngWWVLLFSISRFVFMPLVLlcniqprthlpvliTSDLVYATIVLLMGLSNGYLANITFIcaakqvdphEQEVASAMMVLSLGVGlaggsglglfkdyvi
Flexible Loop (DISEMBL)
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGlaggsglglfkdyvi
Low Complexity Region (SEG)
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMvlslgvglaggsglglFKDYVI
Disordered region (IsUnstruct)
**YDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYV*
Disordered Region (DISOPRED)
*NYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI
Disordered Region (DISEMBL)
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI
Disordered Region (DISPRO)
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNYDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q14542	456	Equilibrative nucleoside	yes	N/A	0.921	0.361	0.411	1e-30
O54699	456	Equilibrative nucleoside	yes	N/A	0.944	0.370	0.385	2e-30
Q61672	456	Equilibrative nucleoside	yes	N/A	0.944	0.370	0.389	5e-29
O54698	457	Equilibrative nucleoside	no	N/A	0.910	0.356	0.374	3e-26
Q99808	456	Equilibrative nucleoside	no	N/A	0.888	0.348	0.362	3e-25
Q9JIM1	460	Equilibrative nucleoside	no	N/A	0.899	0.35	0.349	2e-20
Q80WK7	475	Equilibrative nucleoside	no	N/A	0.905	0.341	0.325	1e-18
Q99P65	475	Equilibrative nucleoside	no	N/A	0.905	0.341	0.351	1e-18
A1A4N1	474	Equilibrative nucleoside	no	N/A	0.871	0.329	0.325	4e-16
Q9BZD2	475	Equilibrative nucleoside	no	N/A	0.871	0.328	0.329	3e-13

>sp|Q14542|S29A2_HUMAN Equilibrative nucleoside transporter 2 OS=Homo sapiens GN=SLC29A2 PE=1 SV=3

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 8   YGSIWMHGLAVCLCFLVSLSLYPSITSLV-KSTSPVHTEWTDKYFTPVIAFLVFSVCDYL 66
           +  IW+  L + L F V+LS++P+IT++V  STSP   +W+ ++F P+  FL+F++ D+L
Sbjct: 287 FQKIWLTALCLVLVFTVTLSVFPAITAMVTSSTSP--GKWS-QFFNPICCFLLFNIMDWL 343

Query: 67  GRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLM 126
           GR +  Y  WP  +   + L    RF+F+PL +LC++  R+ LP+L   D  + T +LL 
Sbjct: 344 GRSLTSYFLWPDEDSRLLPLLVCLRFLFVPLFMLCHVPQRSRLPILFPQDAYFITFMLLF 403

Query: 127 GLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG-LFK 175
            +SNGYL ++T   A +QV PHE+EVA A+M   L +GL+ G+ L  LFK
Sbjct: 404 AVSNGYLVSLTMCLAPRQVLPHEREVAGALMTFFLALGLSCGASLSFLFK 453

Mediates equilibrative transport of purine, pyrimidine nucleosides and the purine base hypoxanthine. Very less sensitive than SLC29A1 to inhibition by nitrobenzylthioinosine (NBMPR), dipyridamole, dilazep and draflazine.
Homo sapiens (taxid: 9606)

>sp|O54699|S29A2_RAT Equilibrative nucleoside transporter 2 OS=Rattus norvegicus GN=Slc29a2 PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 107/171 (62%), Gaps = 2/171 (1%)

Query: 6   IAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDY 65
           + +  IW+  L + L F V+LS++P+IT++V ++S    +W+ ++F P+  FL+F+V D+
Sbjct: 284 VVFRKIWLTALCLVLVFTVTLSVFPAITAMVTTSSNSPGKWS-QFFNPICCFLLFNVMDW 342

Query: 66  LGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLL 125
           LGR +  Y  WP  +   + L    RF+F+PL +LC++  R  LP++   D  + T +LL
Sbjct: 343 LGRSLTSYFLWPDEDSQLLPLLVCLRFLFVPLFMLCHVPQRARLPIIFWQDAYFITFMLL 402

Query: 126 MGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG-LFK 175
             +SNGY  ++T   A +QV PHE+EVA A+M   L +GL+ G+ L  LFK
Sbjct: 403 FAISNGYFVSLTMCLAPRQVLPHEREVAGALMTFFLALGLSCGASLSFLFK 453

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is insensitive (EI) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. Specific for nucleosides, but may also transport hypoxanthine. May also play a role in the efflux of inosine and hypoxanthine from muscle cells during the net degradation of purine nucleotides that occurs during strenuous exercise and/or in the reuptake of these purines during the recovery process.

Rattus norvegicus (taxid: 10116)

>sp|Q61672|S29A2_MOUSE Equilibrative nucleoside transporter 2 OS=Mus musculus GN=Slc29a2 PE=1 SV=2

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 106/172 (61%), Gaps = 3/172 (1%)

Query: 6   IAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDY 65
           + +  IW+  L + L F V+LS++P+IT++V ++S    +W   +F P+  FL+F+V D+
Sbjct: 283 VVFRKIWLTALCLVLVFTVTLSVFPAITAMVTTSSNSPGKW-GLFFNPICCFLLFNVMDW 341

Query: 66  LGRFIAGYLQWPRNNGWWVL-LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVL 124
           LGR +  Y  WP  +   +L L    RF+F+PL +LC++     LP++   D  + T +L
Sbjct: 342 LGRSLTSYFLWPDEDSQQLLPLLVCLRFLFVPLFMLCHVPQHARLPIIFRQDAYFITFML 401

Query: 125 LMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG-LFK 175
           L  +SNGYL ++T   A +QV PHE+EVA A+M   L +GL+ G+ L  LFK
Sbjct: 402 LFAVSNGYLVSLTMCLAPRQVLPHEREVAGALMTFFLALGLSCGASLSFLFK 453

Mediates equilibrative transport of purine and pyrimidine nucleosides, and the purine base hypoxanthine.

Mus musculus (taxid: 10090)

>sp|O54698|S29A1_RAT Equilibrative nucleoside transporter 1 OS=Rattus norvegicus GN=Slc29a1 PE=2 SV=3

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
           SIW+  L+VC  F V++ L+P++T+ V+S+    + W + YF PV  FL F+V D+LGR 
Sbjct: 288 SIWVLALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKNCYFIPVACFLNFNVFDWLGRS 347

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           +     WP  +  W+ +    R VF+PL++LCN++   +LP L   D+ + T +     S
Sbjct: 348 LTAICMWPGQDSRWLPVLVACRVVFIPLLMLCNVKQHHYLPSLFKHDVWFITFMAAFAFS 407

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG 172
           NGYLA++      K+V P E E A  +M   L +GLA G+ L 
Sbjct: 408 NGYLASLCMCFGPKKVKPAEAETAGNIMSFFLCLGLALGAVLS 450

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Resistant to dipyridamole and dilazep inhibition (anticancer chemotherapeutics drugs).

Rattus norvegicus (taxid: 10116)

>sp|Q99808|S29A1_HUMAN Equilibrative nucleoside transporter 1 OS=Homo sapiens GN=SLC29A1 PE=1 SV=3

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 1/160 (0%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
           +I +   +VC  F +++ ++P++T  VKS+    + W ++YF PV  FL F++ D+LGR 
Sbjct: 288 NISVLAFSVCFIFTITIGMFPAVTVEVKSSIAGSSTW-ERYFIPVSCFLTFNIFDWLGRS 346

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           +     WP  +  W+    ++R VF+PL+LLCNI+PR +L V+   D  +   +     S
Sbjct: 347 LTAVFMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFS 406

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169
           NGYLA++      K+V P E E A A+M   L +GLA G+
Sbjct: 407 NGYLASLCMCFGPKKVKPAEAETAGAIMAFFLCLGLALGA 446

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).

Homo sapiens (taxid: 9606)

>sp|Q9JIM1|S29A1_MOUSE Equilibrative nucleoside transporter 1 OS=Mus musculus GN=Slc29a1 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 5/166 (3%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
           SI +  L+VC  F V++ L+P++T+ V+S+    + W   YF PV  FL F+V D+LGR 
Sbjct: 288 SICVPALSVCFIFTVTIGLFPAVTAEVESSIAGTSPW-KSYFIPVACFLNFNVFDWLGRS 346

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPR----THLPVLITSDLVYATIVLL 125
           +     WP  +  W+ +   SR VF+PL++LCN++ R         +   D  +   +  
Sbjct: 347 LTAVCMWPGQDSRWLPVLVASRIVFIPLLMLCNVKARHCGAQRHHFVFKHDAWFIAFMAA 406

Query: 126 MGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL 171
              SNGYLA++      K+V P E E A  +M   L +GLA G+ L
Sbjct: 407 FAFSNGYLASLCMCFGPKKVKPAEAETAGNIMSFFLCLGLALGAVL 452

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Resistant to dipyridamole and dilazep inhibition (anticancer chemotherapeutics drugs).

Mus musculus (taxid: 10090)

>sp|Q80WK7|S29A3_RAT Equilibrative nucleoside transporter 3 OS=Rattus norvegicus GN=Slc29a3 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 10/172 (5%)

Query: 15  GLAVCLCFL--VSLSLYPSITSLVKSTSPVH----TEWTDKYFTPVIAFLVFSVCDYLGR 68
           GL  C  FL  ++  ++P+I++ ++   P+H    + WT K++ P+  FL+F+  D  GR
Sbjct: 307 GLGFCAVFLYFITALIFPAISTNIQ---PMHKGTGSPWTSKFYVPLTVFLLFNFADLCGR 363

Query: 69  FIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLP-VLITSDLVYATIVLLMG 127
            +  ++Q P      + + ++SR   +PL LLCN QPR+HL  VL  SD+       L+G
Sbjct: 364 QVTAWIQVPGPRSKLLPILAVSRVCLVPLFLLCNYQPRSHLTLVLFQSDIYPILFTCLLG 423

Query: 128 LSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI 179
           LSNGYL+ +  +   K V     E  S +M+  + +GL  GS      ++ I
Sbjct: 424 LSNGYLSTLVLMYGPKIVPRELAEATSVVMLFYMSLGLMLGSACAALLEHFI 475

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). Mediates transport of adenine, adenosine and uridine.

Rattus norvegicus (taxid: 10116)

>sp|Q99P65|S29A3_MOUSE Equilibrative nucleoside transporter 3 OS=Mus musculus GN=Slc29a3 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 17  AVCLCFLVSLSLYPSITSLVKSTSP-VHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQ 75
           AV L F+ +  + P+I++ ++S      + WT K+F P+  FL+F+  D  GR +  ++Q
Sbjct: 312 AVSLYFVTAF-IIPAISTNIQSMHKGTGSPWTSKFFVPLTVFLLFNFADLCGRQVTAWIQ 370

Query: 76  WPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHL-PVLITSDLVYATIVLLMGLSNGYLA 134
            P      +    +SRF  +PL LLCN QPR+HL  VL  SD+       L+GLSNGYL+
Sbjct: 371 VPGPRSKLLPGLVVSRFCLVPLFLLCNYQPRSHLTKVLFQSDIYPVLFTCLLGLSNGYLS 430

Query: 135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDYVI 179
            +  I   K V     E  S +M+  + VGL  GS      ++ I
Sbjct: 431 TLVLIYGPKIVPRELAEATSVVMLFYMSVGLMLGSACAALLEHFI 475

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). Mediates transport of adenine, adenosine and uridine.

Mus musculus (taxid: 10090)

>sp|A1A4N1|S29A3_BOVIN Equilibrative nucleoside transporter 3 OS=Bos taurus GN=SLC29A3 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 15  GLAVCLCFLVSLS--LYPSITSLVKSTSP-VHTEWTDKYFTPVIAFLVFSVCDYLGRFIA 71
           GL  C+ +L  ++  ++P+I + ++S S    + W+ K+F P+  FL+++  D  GR + 
Sbjct: 306 GLGFCIIYLFFITSLIFPAICTNIESLSKGSGSPWSTKFFVPLTTFLLYNFADLCGRQVT 365

Query: 72  GYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHL-PVLITSDLVYATIVLLMGLSN 130
            ++Q P      +   ++ R  F+PL + CN QPR HL  VL  SD+       L+GLSN
Sbjct: 366 AWIQVPGPRSKALPGLALLRTCFVPLFVFCNYQPRGHLHTVLFQSDVYPVLFTSLLGLSN 425

Query: 131 GYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170
           GYL+ +  I   K V     E    +M   +G+GL  GS 
Sbjct: 426 GYLSTLALIYGPKIVPRELAEATGVVMTFYMGLGLVLGSA 465

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). Mediates transport of adenine, adenosine and uridine.

Bos taurus (taxid: 9913)

>sp|Q9BZD2|S29A3_HUMAN Equilibrative nucleoside transporter 3 OS=Homo sapiens GN=SLC29A3 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 15  GLAVCLCFLVSLSLYPSITSLVKSTSP-VHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGY 73
           G  V   F ++  +YP+I + ++S +    + WT K+F P+  FL+++  D  GR +  +
Sbjct: 309 GFCVTYVFFITSLIYPAICTNIESLNKGSGSLWTTKFFIPLTTFLLYNFADLCGRQLTAW 368

Query: 74  LQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLP-VLITSDLVYATIVLLMGLSNGY 132
           +Q P  N   +  F + R   +PL +LCN QPR HL  V+  SD+  A +  L+GLSNGY
Sbjct: 369 IQVPGPNSKALPGFVLLRTCLIPLFVLCNYQPRVHLKTVVFQSDVYPALLSSLLGLSNGY 428

Query: 133 LANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG 170
           L+ +  +   K V     E    +M   + +GL  GS 
Sbjct: 429 LSTLALLYGPKIVPRELAEATGVVMSFYVCLGLTLGSA 466

Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). Mediates transport of adenine, adenosine and uridine, as well as several nucleoside analog drugs, such as anticancer and antiviral agents, including cladribine, cordycepin, tubercidin and AZT. Does not transport hypoxanthine.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
91081805	453	PREDICTED: similar to AGAP009114-PA [Tri	0.916	0.362	0.518	4e-42
307201187	471	Equilibrative nucleoside transporter 1 [	0.916	0.348	0.478	7e-40
383856861	491	PREDICTED: equilibrative nucleoside tran	0.916	0.334	0.478	4e-39
307182978	385	Equilibrative nucleoside transporter 1 [	0.916	0.425	0.460	9e-39
332018550	471	Equilibrative nucleoside transporter 1 [	0.916	0.348	0.466	1e-38
322791070	472	hypothetical protein SINV_80532 [Solenop	0.916	0.347	0.454	1e-38
242013607	464	Equilibrative nucleoside transporter, pu	0.910	0.351	0.463	1e-37
328720503	469	PREDICTED: equilibrative nucleoside tran	0.916	0.349	0.451	1e-37
380011800	473	PREDICTED: equilibrative nucleoside tran	0.916	0.346	0.472	5e-37
328787910	473	PREDICTED: equilibrative nucleoside tran	0.916	0.346	0.460	1e-36

>gi|91081805|ref|XP_974174.1| PREDICTED: similar to AGAP009114-PA [Tribolium castaneum] gi|270006294|gb|EFA02742.1| hypothetical protein TcasGA2_TC008473 [Tribolium castaneum]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVH-TEWTDKYFTPVIAFLVFSVCDYLGR 68
            IW HGL++ + F ++LS+YPS+T LV+S        W D YF P IA+L+FSV DYLGR
Sbjct: 284 KIWTHGLSMFMVFAITLSVYPSVTVLVESEGKGQGRRWNDVYFVPTIAYLLFSVGDYLGR 343

Query: 69  FIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGL 128
            +AG +Q P+  G+ +L+ S +RFVF+PL++LCN QPR+H  V+   D  Y +I+ L  L
Sbjct: 344 ILAGRIQKPKK-GYILLILSTARFVFIPLLMLCNAQPRSHWAVVFDHDYEYISILFLCAL 402

Query: 129 SNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           SNGYLANIT ICA + V+ HE+E AS+MM + +GVGLA GSG+ L+
Sbjct: 403 SNGYLANITAICAPRVVESHEKETASSMMTVFMGVGLALGSGISLY 448

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201187|gb|EFN81093.1| Equilibrative nucleoside transporter 1 [Harpegnathos saltator]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTE-WTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G+++ L F +SL++YP++T LV+S        W D YF PV+ +L+FS  DY+GR 
Sbjct: 302 IWHYGISIFLVFFISLAVYPAVTVLVESQYKGQGHVWNDVYFVPVVTYLIFSTGDYVGRV 361

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           ++G LQWPR+  W V+  S+ R VF+P ++ CN QPR HLPV I +DL Y  I ++  L+
Sbjct: 362 LSGILQWPRSKPWLVIFLSVLRTVFIPALMFCNAQPRHHLPVYIHNDLYYVLITIIFALT 421

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+TFI     VD  E+E+ASAMM   LG+GLA G+ L L+
Sbjct: 422 NGYLCNLTFILVPTVVDSQEKEIASAMMGAFLGIGLASGAALSLY 466

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856861|ref|XP_003703925.1| PREDICTED: equilibrative nucleoside transporter 1-like [Megachile rotundata]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHT-EWTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G++V L F +S+S+ PS+T LV+S        W D YF PV+ +L+FS  DY+GR 
Sbjct: 322 IWHYGVSVFLVFFISISVCPSVTVLVESQYKGKGYAWNDIYFVPVVTYLIFSSGDYVGRI 381

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           ++G LQWP+N  W V+L S++R +F+P ++ CN QPR HLPV I +D  Y  + ++  +S
Sbjct: 382 LSGILQWPKNKPWHVILLSLARVIFIPALMFCNAQPRHHLPVYINNDFYYILLTIVFAIS 441

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+TFI     VD  E+E+ASAMM   LG+GLA G+ L LF
Sbjct: 442 NGYLCNLTFILIPTVVDSQEKEIASAMMGAFLGMGLASGAALSLF 486

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182978|gb|EFN69965.1| Equilibrative nucleoside transporter 1 [Camponotus floridanus]

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTE-WTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G+++ L F ++L++YP+IT LV+S        W D YF PV+ +L+F + DY GR 
Sbjct: 216 IWHYGISIFLVFFITLAVYPAITVLVESQYKGKGHAWNDIYFVPVVTYLIFGLGDYAGRV 275

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           ++G  QWP+ N W V+  S++R VF+P+++ CN QPR HLPV I +D+ Y  I ++  ++
Sbjct: 276 LSGIFQWPKGNPWLVMFMSVARSVFIPVIMFCNAQPRHHLPVYIHNDIYYILITVMFAIT 335

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+TFI     VD  E+EVASAMM   LG+GLA G+ L L+
Sbjct: 336 NGYLCNLTFILVPTIVDSQEKEVASAMMGAFLGIGLASGAPLSLY 380

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018550|gb|EGI59139.1| Equilibrative nucleoside transporter 1 [Acromyrmex echinatior]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTE-WTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G+++ L F +SL++YP++T LV+S        W D YF PV+ +L+FS  DY GR 
Sbjct: 302 IWHYGVSIFLIFFISLAVYPAVTVLVESEYKGKGHAWNDIYFVPVVTYLIFSTGDYAGRI 361

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           + G LQWP+   W V+  S++R +F+P ++ CN QPR HLPV I SD+ Y  I +   ++
Sbjct: 362 LCGILQWPKGKPWLVIFLSVARGIFIPALMFCNAQPRHHLPVYIHSDIYYILITIAFAVT 421

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+TFI A   VD  E+E+ASAMM   LG+GLA G+ L L+
Sbjct: 422 NGYLCNLTFILAPTIVDSQEKEIASAMMGAFLGIGLASGAALSLY 466

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791070|gb|EFZ15670.1| hypothetical protein SINV_80532 [Solenopsis invicta]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 111/165 (67%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVH-TEWTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G+++ L F +S+++YP+IT LV+S        W D YF PV+ +L+FS+ DY GR 
Sbjct: 303 IWHYGVSIFLVFFISMAVYPAITVLVESKGRGKGNAWNDIYFVPVVTYLIFSMGDYTGRV 362

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           + G LQWP++N W V+  S++R +F+P+ + CN QPR HLPV I +D+ Y  + +   ++
Sbjct: 363 LCGVLQWPKSNPWLVMFMSVARGIFIPMFMFCNAQPRHHLPVYIDNDVYYILLTIAFAIT 422

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+TFI A   VD  E+E+ASAM    LG+GLA G+ L L+
Sbjct: 423 NGYLCNLTFILAPTVVDSQEKEIASAMTGAFLGIGLASGAALSLY 467

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013607|ref|XP_002427494.1| Equilibrative nucleoside transporter, putative [Pediculus humanus corporis] gi|212511889|gb|EEB14756.1| Equilibrative nucleoside transporter, putative [Pediculus humanus corporis]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 108/164 (65%), Gaps = 1/164 (0%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
            +W++G +V LCF V+LS+YP++T L+ S +   + W  KYF PV+AFL+FS+ DYLGR 
Sbjct: 296 KVWIYGFSVALCFAVTLSVYPAVTVLISSLNGSGS-WQKKYFVPVVAFLIFSIWDYLGRI 354

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           +AG+L+WP      +L FS  R VF+PL+LLCN  PR +LPVLI +D  Y  +  L G +
Sbjct: 355 LAGFLKWPLKKERLILTFSFIRIVFVPLILLCNANPRQNLPVLINNDSYYIALTCLFGFT 414

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL 173
           NGYL NI  +     VD  E++ AS+++ + LG+G A GS L  
Sbjct: 415 NGYLTNIIMVNYRSVVDESEKDAASSLVSVFLGIGCAAGSALSF 458

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720503|ref|XP_003247051.1| PREDICTED: equilibrative nucleoside transporter 1-like [Acyrthosiphon pisum]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 112/164 (68%)

Query: 6   IAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDY 65
           +    IW  GL+ C  FLV++S+YP++T L+ S +  HT WTD YF PVIA+L+FS+CD+
Sbjct: 296 VVLKKIWKLGLSTCYNFLVTMSVYPAVTVLITSVNEEHTVWTDTYFLPVIAYLLFSMCDF 355

Query: 66  LGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLL 125
           LGR ++  +Q P N+ W   + S  R +F+PL++ CN +PR +LPVLI +D +YA I+ +
Sbjct: 356 LGRVMSNLIQLPVNSIWPATVLSALRTIFIPLMMFCNAKPRHYLPVLINNDQLYAVIISI 415

Query: 126 MGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169
            G +NG ++NIT       VD HE E+AS++M+  LG+G++ GS
Sbjct: 416 FGFTNGIVSNITMASIPYFVDKHELEMASSLMITFLGIGISTGS 459

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011800|ref|XP_003689982.1| PREDICTED: equilibrative nucleoside transporter 3-like [Apis florea]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHT-EWTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G++V L F +SLS+YP++T L++S        W D YF PV+ +L+FS  DY GR 
Sbjct: 304 IWHYGISVLLVFFISLSVYPALTVLIESQYKGKGYMWNDIYFVPVVTYLIFSCGDYTGRI 363

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           ++G  QWP+N  W V+L S+ R  F+P  + CN QPR HL V I +D+ Y  I +   +S
Sbjct: 364 LSGIFQWPKNKPWQVVLLSLMRVAFIPAFMFCNAQPRHHLSVYIHNDIFYILITVAFAIS 423

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+T I     VD  E+E+ASAMM   LGVGL  GS L LF
Sbjct: 424 NGYLCNLTLILTPTVVDSQEKEIASAMMGAFLGVGLISGSALSLF 468

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787910|ref|XP_625031.3| PREDICTED: equilibrative nucleoside transporter 3 [Apis mellifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 1/165 (0%)

Query: 11  IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTE-WTDKYFTPVIAFLVFSVCDYLGRF 69
           IW +G++V L F +SLS+YP++T L++S        W D YF PV+ +L+FS  DY GR 
Sbjct: 304 IWHYGISVLLVFFISLSVYPALTVLIESQYKGKGYIWNDIYFVPVVTYLIFSCGDYTGRI 363

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           ++G  QWP+N  W V++ S+ R  F+P  L CN QPR HL V I +D+ Y  I +   +S
Sbjct: 364 LSGIFQWPKNKPWQVVILSLIRIAFIPAFLFCNAQPRHHLSVYIHNDIYYILITIAFAIS 423

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL N+T I     VD  E+E+ASAMM   LG+GL  GS   LF
Sbjct: 424 NGYLCNLTLILTPTVVDSQEKEIASAMMGAFLGIGLISGSAFSLF 468

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
ZFIN|ZDB-GENE-050913-138	440	slc29a1 "solute carrier family	0.832	0.338	0.393	3.8e-30
UNIPROTKB|Q14542	456	SLC29A2 "Equilibrative nucleos	0.821	0.322	0.410	2.7e-29
RGD|69296	456	Slc29a2 "solute carrier family	0.843	0.331	0.381	5.6e-29
UNIPROTKB|E2RM69	456	SLC29A2 "Uncharacterized prote	0.832	0.326	0.392	3.1e-28
MGI|MGI:1345278	456	Slc29a2 "solute carrier family	0.843	0.331	0.385	3.9e-28
UNIPROTKB|E1C1Q3	457	SLC29A1 "Uncharacterized prote	0.832	0.326	0.373	8.6e-28
UNIPROTKB|F1RU56	456	SLC29A2 "Uncharacterized prote	0.832	0.326	0.398	1.5e-27
FB|FBgn0031250	476	Ent1 "Equilibrative nucleoside	0.810	0.304	0.401	3e-27
UNIPROTKB|F1PAA1	456	SLC29A1 "Uncharacterized prote	0.821	0.322	0.385	4e-26
UNIPROTKB|J9P3J4	456	SLC29A1 "Uncharacterized prote	0.821	0.322	0.385	4e-26

ZFIN|ZDB-GENE-050913-138 slc29a1 "solute carrier family 29 (nucleoside transporters), member 1" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 59/150 (39%), Positives = 93/150 (62%)

Query:     8 YGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLG 67
             +  IW+  L+VC  F++++ ++P++T  V+ST P    W +KYF PV  FL+F+V D++G
Sbjct:   270 FKQIWVMALSVCFVFIITIGIFPAVTVEVQSTIPDRGAW-EKYFIPVSCFLLFNVMDWVG 328

Query:    68 RFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMG 127
             R +     WP  +  W+ +  I+R VF+PL +LCN+QPR+ LPV+ + D  Y   ++   
Sbjct:   329 RSLTAVCMWPGKDSIWLPILVIARVVFVPLFILCNVQPRSFLPVVFSHDAWYIIFMIFFS 388

Query:   128 LSNGYLANITFICAAKQVDPHEQEVASAMM 157
              SNGYLA++      K+V  HE E A A+M
Sbjct:   389 FSNGYLASLCMCFGPKKVSQHEAETAGAIM 418

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q14542 SLC29A2 "Equilibrative nucleoside transporter 2" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 62/151 (41%), Positives = 98/151 (64%)

Query:     8 YGSIWMHGLAVCLCFLVSLSLYPSITSLV-KSTSPVHTEWTDKYFTPVIAFLVFSVCDYL 66
             +  IW+  L + L F V+LS++P+IT++V  STSP   +W+ ++F P+  FL+F++ D+L
Sbjct:   287 FQKIWLTALCLVLVFTVTLSVFPAITAMVTSSTSP--GKWS-QFFNPICCFLLFNIMDWL 343

Query:    67 GRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLM 126
             GR +  Y  WP  +   + L    RF+F+PL +LC++  R+ LP+L   D  + T +LL 
Sbjct:   344 GRSLTSYFLWPDEDSRLLPLLVCLRFLFVPLFMLCHVPQRSRLPILFPQDAYFITFMLLF 403

Query:   127 GLSNGYLANITFICAAKQVDPHEQEVASAMM 157
              +SNGYL ++T   A +QV PHE+EVA A+M
Sbjct:   404 AVSNGYLVSLTMCLAPRQVLPHEREVAGALM 434

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006139 "nucleobase-containing compound metabolic process" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|69296 Slc29a2 "solute carrier family 29 (nucleoside transporters), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 58/152 (38%), Positives = 96/152 (63%)

Query:     6 IAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDY 65
             + +  IW+  L + L F V+LS++P+IT++V ++S    +W+ ++F P+  FL+F+V D+
Sbjct:   284 VVFRKIWLTALCLVLVFTVTLSVFPAITAMVTTSSNSPGKWS-QFFNPICCFLLFNVMDW 342

Query:    66 LGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLL 125
             LGR +  Y  WP  +   + L    RF+F+PL +LC++  R  LP++   D  + T +LL
Sbjct:   343 LGRSLTSYFLWPDEDSQLLPLLVCLRFLFVPLFMLCHVPQRARLPIIFWQDAYFITFMLL 402

Query:   126 MGLSNGYLANITFICAAKQVDPHEQEVASAMM 157
               +SNGY  ++T   A +QV PHE+EVA A+M
Sbjct:   403 FAISNGYFVSLTMCLAPRQVLPHEREVAGALM 434

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISO;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0007595 "lactation" evidence=IEP

GO:0015853 "adenine transport" evidence=IDA

GO:0015854 "guanine transport" evidence=IMP

GO:0015858 "nucleoside transport" evidence=ISO;IDA

GO:0015862 "uridine transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0035344 "hypoxanthine transport" evidence=IMP

GO:0035364 "thymine transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|E2RM69 SLC29A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/153 (39%), Positives = 97/153 (63%)

Query:     6 IAYGSIWMHGLAVCLCFLVSLSLYPSITSLV-KSTSPVHTEWTDKYFTPVIAFLVFSVCD 64
             I +  IW+  L + L F V+LS++P+IT++V  STSP   +W+ ++F P+  FL+F++ D
Sbjct:   285 IVFQKIWLTALCLVLVFTVTLSVFPAITAMVTSSTSP--GKWS-RFFNPICCFLLFNIMD 341

Query:    65 YLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVL 124
             ++GR +  Y  WP  +   + L    R +F+PL +LC++  R+ LP+L   D  + T +L
Sbjct:   342 WVGRSLTSYFLWPDEDSRLLPLLVCLRVLFVPLFMLCHVPERSRLPILFPQDAYFITFML 401

Query:   125 LMGLSNGYLANITFICAAKQVDPHEQEVASAMM 157
             L  +SNGYL ++T   A +QV PHE+EVA  +M
Sbjct:   402 LFAVSNGYLMSLTMCLAPRQVLPHEREVAGTLM 434

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1345278 Slc29a2 "solute carrier family 29 (nucleoside transporters), member 2" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 59/153 (38%), Positives = 95/153 (62%)

Query:     6 IAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDY 65
             + +  IW+  L + L F V+LS++P+IT++V ++S    +W   +F P+  FL+F+V D+
Sbjct:   283 VVFRKIWLTALCLVLVFTVTLSVFPAITAMVTTSSNSPGKW-GLFFNPICCFLLFNVMDW 341

Query:    66 LGRFIAGYLQWPRNNGWWVL-LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVL 124
             LGR +  Y  WP  +   +L L    RF+F+PL +LC++     LP++   D  + T +L
Sbjct:   342 LGRSLTSYFLWPDEDSQQLLPLLVCLRFLFVPLFMLCHVPQHARLPIIFRQDAYFITFML 401

Query:   125 LMGLSNGYLANITFICAAKQVDPHEQEVASAMM 157
             L  +SNGYL ++T   A +QV PHE+EVA A+M
Sbjct:   402 LFAVSNGYLVSLTMCLAPRQVLPHEREVAGALM 434

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015853 "adenine transport" evidence=ISO

GO:0015854 "guanine transport" evidence=ISO

GO:0015858 "nucleoside transport" evidence=ISO;IDA

GO:0015862 "uridine transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0035344 "hypoxanthine transport" evidence=ISO

GO:0035364 "thymine transport" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IDA

UNIPROTKB|E1C1Q3 SLC29A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 8.6e-28, P = 8.6e-28
 Identities = 56/150 (37%), Positives = 91/150 (60%)

Query:     8 YGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLG 67
             +  +W+  ++VCL F V++ ++PSIT+ V +T    ++W D YF  V  FL+F+V D++G
Sbjct:   287 FKKLWVMAVSVCLVFTVTIGVFPSITAKVSTTLGKESKW-DLYFVSVSCFLIFNVFDWMG 345

Query:    68 RFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMG 127
             R +     WP  +   + +  + R +F+PL +LCN+QPR HLPV+ + D  Y   ++   
Sbjct:   346 RSLTALFTWPGKDSCLLPVMVVLRVIFIPLFMLCNVQPRNHLPVIFSHDAWYIIFMIFFS 405

Query:   128 LSNGYLANITFICAAKQVDPHEQEVASAMM 157
             +SNGYLA++      K+V  HE E A A+M
Sbjct:   406 ISNGYLASLCMCFGPKKVLAHEAETAGAVM 435

GO:0016021 "integral to membrane" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

UNIPROTKB|F1RU56 SLC29A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 61/153 (39%), Positives = 94/153 (61%)

Query:     6 IAYGSIWMHGLAVCLCFLVSLSLYPSITSLV-KSTSPVHTEWTDKYFTPVIAFLVFSVCD 64
             I +  IW   L + L F V+LS++P+IT++V  ST P   +W+ ++F P+  FL+F+V D
Sbjct:   285 IVFRKIWRTALCLVLVFAVTLSVFPAITAMVTSSTGP--GKWS-QFFNPICCFLLFNVMD 341

Query:    65 YLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVL 124
              LGR +  Y  WP  +   + L    R +F+PL +LC++  R+ LP+L   D  + T +L
Sbjct:   342 CLGRSLTSYFLWPDEDSRLLPLLVCLRVLFVPLFMLCHVPERSRLPILFPQDAYFVTFML 401

Query:   125 LMGLSNGYLANITFICAAKQVDPHEQEVASAMM 157
             L  +SNGYL ++T   A +QV PHE+EVA  +M
Sbjct:   402 LFAVSNGYLVSLTMCLAPRQVLPHEREVAGTLM 434

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015858 "nucleoside transport" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0031250 Ent1 "Equilibrative nucleoside transporter 1" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 59/147 (40%), Positives = 93/147 (63%)

Query:    11 IWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFI 70
             I++H +++ L +  +LS+YP++T L++S    H+ WTD YF PV+ +L+F+  DY GR  
Sbjct:   310 IYLHAISLALLYTTTLSVYPAVTVLMQSEYG-HSVWTDVYFLPVVNYLIFNCGDYFGRLF 368

Query:    71 AGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN 130
             AG+++ P N     LLF + R  F+PL L  N    + LPVL+  D  +  ++++  LSN
Sbjct:   369 AGWMERPLNQNT-SLLFIVVRMAFVPLFLCSNSSEHSFLPVLVKHDYTFIAMMVMFALSN 427

Query:   131 GYLANITFICAAKQVDPHEQEVASAMM 157
             GY  NI  I A K+V  HE+E+AS++M
Sbjct:   428 GYFTNILLIMAPKRVKQHEKELASSIM 454

GO:0015858 "nucleoside transport" evidence=ISS

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISM

UNIPROTKB|F1PAA1 SLC29A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 57/148 (38%), Positives = 88/148 (59%)

Query:    10 SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
             +I +  L+VC  F V++ ++P++T+ V+ST   ++ W  KYF PV  FL F+V D+LGR 
Sbjct:   288 NILVPALSVCFIFTVTIGVFPAVTAEVQSTIAGNSAW-GKYFIPVSCFLTFNVFDWLGRS 346

Query:    70 IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
             +     WP  +  W+    ++R +F+PL+LLCN+QPR HL V+   D  +   +     S
Sbjct:   347 LTAIFTWPGKDSHWLPSLVLARMLFVPLLLLCNVQPRRHLAVVFEHDAWFIIFMAAFAFS 406

Query:   130 NGYLANITFICAAKQVDPHEQEVASAMM 157
             NGYLA++      K+V P E E A A+M
Sbjct:   407 NGYLASLCMCFGPKKVKPAEAETAGAIM 434

GO:0016021 "integral to membrane" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

UNIPROTKB|J9P3J4 SLC29A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 57/148 (38%), Positives = 88/148 (59%)

Query:    10 SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
             +I +  L+VC  F V++ ++P++T+ V+ST   ++ W  KYF PV  FL F+V D+LGR 
Sbjct:   288 NILVPALSVCFIFTVTIGVFPAVTAEVQSTIAGNSAW-GKYFIPVSCFLTFNVFDWLGRS 346

Query:    70 IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
             +     WP  +  W+    ++R +F+PL+LLCN+QPR HL V+   D  +   +     S
Sbjct:   347 LTAIFTWPGKDSHWLPSLVLARMLFVPLLLLCNVQPRRHLAVVFEHDAWFIIFMAAFAFS 406

Query:   130 NGYLANITFICAAKQVDPHEQEVASAMM 157
             NGYLA++      K+V P E E A A+M
Sbjct:   407 NGYLASLCMCFGPKKVKPAEAETAGAIM 434

GO:0016021 "integral to membrane" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
TIGR00939	437	TIGR00939, 2a57, Equilibrative Nucleoside Transpor	2e-41
pfam01733	305	pfam01733, Nucleoside_tran, Nucleoside transporter	1e-39

>gnl|CDD|233199 TIGR00939, 2a57, Equilibrative Nucleoside Transporter (ENT)

 Score =  143 bits (363), Expect = 2e-41
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
            +W+   +V   F V+LS++P+IT+ V S+    + W    F P+I FL+F++ D+LGR 
Sbjct: 270 KVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNW----FYPIICFLLFNLFDWLGRS 325

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLS 129
           +     WP  +  W+ + S  R +F+PL LLCN   R+ LPV    D  +  ++LL G S
Sbjct: 326 LTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385

Query: 130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF 174
           NGYL +++   A +QVDPHE+EVA A+MV+ L VGLA G+ L   
Sbjct: 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 437

>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter

 Score =  136 bits (343), Expect = 1e-39
 Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 4/161 (2%)

Query: 10  SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRF 69
              +  L+V L F V+LS++P+ T+ V S+ P    W  +YF PV+ FL+F++ D LGR 
Sbjct: 140 KFPVLALSVVLIFTVTLSVFPAPTAEVVSSLP---TWEKQYFMPVLCFLLFNLFDLLGRS 196

Query: 70  IAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGL 128
           +A +  WP  +  W+ + SI R +F+PL LLCN +P++  LPV   SD ++  ++ L   
Sbjct: 197 LAAWFMWPGQDPRWLPVLSILRLLFIPLFLLCNYKPQSRALPVFFESDWLFIILMALFAF 256

Query: 129 SNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS 169
           SNGYL+++  + A KQV PHE E A  + V  L +GLA GS
Sbjct: 257 SNGYLSSLAMMYAPKQVPPHEAETAGMITVFFLILGLALGS 297

This is a family of nucleoside transporters. In mammalian cells nucleoside transporters transport nucleoside across the plasma membrane and are essential for nucleotide synthesis via the salvage pathways for cells that lack their own de novo synthesis pathways. Also in this family is mouse and human nucleolar protein HNP36, a protein of unknown function; although it has been hypothesised to be a plasma membrane nucleoside transporter. Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	100.0
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	100.0
KOG1479|consensus	406		100.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.4
TIGR00891	405	2A0112 putative sialic acid transporter.	95.71
TIGR00900	365	2A0121 H+ Antiporter protein.	95.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.55
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	95.55
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.13
TIGR00893	399	2A0114 d-galactonate transporter.	95.12
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	94.96
PRK12382	392	putative transporter; Provisional	94.94
PRK05122	399	major facilitator superfamily transporter; Provisi	94.47
TIGR00898	505	2A0119 cation transport protein.	94.45
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.35
PRK10054	395	putative transporter; Provisional	94.24
TIGR00895	398	2A0115 benzoate transport.	94.19
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	93.76
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	93.65
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	93.53
TIGR00900	365	2A0121 H+ Antiporter protein.	93.39
TIGR00895	398	2A0115 benzoate transport.	93.34
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	93.19
PRK10489	417	enterobactin exporter EntS; Provisional	93.12
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	93.07
TIGR00892	455	2A0113 monocarboxylate transporter 1.	93.06
PRK05122	399	major facilitator superfamily transporter; Provisi	92.99
PRK12382	392	putative transporter; Provisional	92.8
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	92.64
PRK14995	495	methyl viologen resistance protein SmvA; Provision	92.1
PRK09874	408	drug efflux system protein MdtG; Provisional	92.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	92.03
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	91.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	91.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	91.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	91.75
KOG2504|consensus	509		91.72
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	91.69
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	91.59
PRK10091	382	MFS transport protein AraJ; Provisional	91.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	91.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	91.51
PRK10489	417	enterobactin exporter EntS; Provisional	91.46
KOG0569|consensus	485		91.15
KOG3880|consensus	409		91.08
PRK12307	426	putative sialic acid transporter; Provisional	91.01
TIGR00898	505	2A0119 cation transport protein.	90.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	90.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	90.79
TIGR00893	399	2A0114 d-galactonate transporter.	90.74
PRK10213	394	nepI ribonucleoside transporter; Reviewed	90.72
PRK03699	394	putative transporter; Provisional	90.54
PRK03545	390	putative arabinose transporter; Provisional	90.36
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	90.31
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	90.16
PRK03699	394	putative transporter; Provisional	90.13
TIGR00901	356	2A0125 AmpG-related permease.	90.02
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	89.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	89.59
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	89.32
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	89.2
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	88.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	88.57
PRK11902	402	ampG muropeptide transporter; Reviewed	88.52
PRK03545	390	putative arabinose transporter; Provisional	88.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	88.03
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	87.46
PRK15403	413	multidrug efflux system protein MdtM; Provisional	87.4
PRK10504	471	putative transporter; Provisional	87.4
PRK03893	496	putative sialic acid transporter; Provisional	87.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	87.07
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	86.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	85.99
TIGR00891	405	2A0112 putative sialic acid transporter.	85.79
PRK03633	381	putative MFS family transporter protein; Provision	84.5
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	84.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	84.08
PRK11663	434	regulatory protein UhpC; Provisional	83.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	83.4
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	83.36
PRK10504	471	putative transporter; Provisional	83.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	82.9
PRK03633	381	putative MFS family transporter protein; Provision	82.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	82.65
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	81.75
PRK10077	479	xylE D-xylose transporter XylE; Provisional	81.67
TIGR00897	402	2A0118 polyol permease family. This family of prot	81.36
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	81.32
PRK11195	393	lysophospholipid transporter LplT; Provisional	81.19
PRK09669	444	putative symporter YagG; Provisional	80.33
PRK10642	490	proline/glycine betaine transporter; Provisional	80.19

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=100.00  E-value=1.8e-46  Score=333.41  Aligned_cols=171  Identities=39%  Similarity=0.798  Sum_probs=158.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHH
Q psy1201           5 VIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWV   84 (179)
Q Consensus         5 ~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l   84 (179)
                      ++++||+|++++++|++|++||++|||+++++++++.+.++|    +.|++++++||+||++||.++.+..||+++.+++
T Consensus       265 ~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~----~~~~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l  340 (437)
T TIGR00939       265 WVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNW----FYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWL  340 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCcc----HHHHHHHHHHHHHHHHHhhhhheeEeeCCCccch
Confidence            578999999999999999999999999999999876544555    3678899999999999999999988886665688


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy1201          85 LLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVG  164 (179)
Q Consensus        85 ~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~G  164 (179)
                      ++++++|++|||+|++||++++++.|++++||+++++++++||+||||++|++|++||++++++|||.||.+|+++++.|
T Consensus       341 ~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~G  420 (437)
T TIGR00939       341 PILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG  420 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhC
Q psy1201         165 LAGGSGLGLFKDYVI  179 (179)
Q Consensus       165 l~~Gs~~s~~~~~~i  179 (179)
                      +++||.+|+++..++
T Consensus       421 l~~Gs~l~~~~~~~l  435 (437)
T TIGR00939       421 LALGAVLSFLFVAIL  435 (437)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988764

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=100.00  E-value=1.2e-48  Score=332.55  Aligned_cols=169  Identities=41%  Similarity=0.860  Sum_probs=4.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhHH
Q psy1201           5 VIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWWV   84 (179)
Q Consensus         5 ~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~l   84 (179)
                      ++++||+|+++++++++|++|+++||++++.+++++.  ++|++ +|.|+++|++||+||++||.++.+.+||.++++|+
T Consensus       139 ~~v~~~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~~--~~~~~-~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l  215 (309)
T PF01733_consen  139 WVVLKKIWPYALSIFLVFFVTLSVFPGITSAVQSSNN--PDWSS-YFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWL  215 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhheeeeccceeeeeecccc--CCCcc-HHHHHHHHHHHHHHHHhcchhcceeEecccccccH
Confidence            6799999999999999999999999999999888755  45854 89999999999999999999999999986677888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCC-CCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201          85 LLFSISRFVFMPLVLLCNIQPRTH-LPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV  163 (179)
Q Consensus        85 ~~~~~~R~~fiPlf~lc~~~~~~~-~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~  163 (179)
                      ++.+++|++|||+|++||++|+.+ .|++++||+++++++++||+||||++|++|++||++++++|||.||.+|+++|+.
T Consensus       216 ~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~  295 (309)
T PF01733_consen  216 WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF  295 (309)
T ss_dssp             ---------------------------------------------------HHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998853 5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy1201         164 GLAGGSGLGLFKD  176 (179)
Q Consensus       164 Gl~~Gs~~s~~~~  176 (179)
                      |+++||++|++++
T Consensus       296 Gl~~Gs~ls~~~~  308 (309)
T PF01733_consen  296 GLFIGSVLSFLLV  308 (309)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999875

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479|consensus

Probab=100.00  E-value=2.5e-40  Score=289.37  Aligned_cols=165  Identities=36%  Similarity=0.621  Sum_probs=149.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhH
Q psy1201           4 DVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWW   83 (179)
Q Consensus         4 ~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~   83 (179)
                      +|+++||+++++++++++|+|||++|||+++++++++.. ++|    +.++..+..||++|++||.++.+.+|+.+|  +
T Consensus       241 ~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~-~~~----y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r--~  313 (406)
T KOG1479|consen  241 LWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLL-GDW----YALLLVFLSFNVFDLIGSILAALLTWPDPR--K  313 (406)
T ss_pred             HHHHHHHHHHHhhchheeeeeeeEecchhhcccccCccc-chh----hHHHHHHHHhHHHHHhhhhhhhcccCCCCc--e
Confidence            589999999999999999999999999999999987763 456    345544444999999999999999998554  5


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201          84 VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV  163 (179)
Q Consensus        84 l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~  163 (179)
                      +++.+++|++|||+|.+||+.|   .|+++++|+++++++.+||+||||+++++|++|||+++++|||.||++|++++..
T Consensus       314 l~i~v~lR~lfiPlF~~cn~~~---~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~  390 (406)
T KOG1479|consen  314 LTIPVLLRLLFIPLFLLCNYPP---LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVG  390 (406)
T ss_pred             ehHHHHHHHHHHHHHHHhccCC---CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHH
Confidence            6678889999999999999988   5789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy1201         164 GLAGGSGLGLFKDYV  178 (179)
Q Consensus       164 Gl~~Gs~~s~~~~~~  178 (179)
                      |+++|+.+|+...-+
T Consensus       391 Gl~~G~~~s~l~~~~  405 (406)
T KOG1479|consen  391 GLALGSLLSWVFVIM  405 (406)
T ss_pred             HHHHhhHHHHHHHHh
Confidence            999999999987654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.40  E-value=6.1e-06  Score=73.29  Aligned_cols=159  Identities=13%  Similarity=0.161  Sum_probs=112.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcccCCCCChhH
Q psy1201           4 DVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYLQWPRNNGWW   83 (179)
Q Consensus         4 ~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~~~~~~~~~~   83 (179)
                      +++..|+..++.+-++++|+-=..+-.|+.....-... ..+-  +.+.+. .-++|++|.+++|....+.+.+     .
T Consensus       238 k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~-~~~~--r~~Y~~-Y~~~YQ~GVFISRSS~~~~rir-----~  308 (402)
T PF02487_consen  238 KLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNS-FFSP--RDQYRW-YQLLYQLGVFISRSSLPFFRIR-----R  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCcc-CCCH--HHHHHH-HHHHHHHHHhhhhcceeeeehh-----h
Confidence            46677887778888888888877776776654321111 0111  223453 6789999999999988776552     2


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHH
Q psy1201          84 VLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGV  163 (179)
Q Consensus        84 l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~  163 (179)
                      +++++++..+-.-++++-...      .+++|.|..+++++.-|+..|-.-.-++....+.++++|||.+=...+++-+.
T Consensus       309 lwils~LQ~~nl~~~~l~s~~------~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~  382 (402)
T PF02487_consen  309 LWILSLLQVINLVFLLLQSWY------RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSL  382 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhH
Confidence            445666676665555433321      13567787788888888888865555566667788999999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy1201         164 GLAGGSGLGLFKDY  177 (179)
Q Consensus       164 Gl~~Gs~~s~~~~~  177 (179)
                      |+.+++++++.++.
T Consensus       383 GI~lAgll~l~le~  396 (402)
T PF02487_consen  383 GILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.71  E-value=0.27  Score=41.46  Aligned_cols=149  Identities=12%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCCh
Q psy1201           3 YDVIAYGSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNG   81 (179)
Q Consensus         3 ~~~~v~k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~   81 (179)
                      ++|..+.-++.......+.....-.+.|.+..+..        +++.. .- .....+.+++.+|..+.++. +.-++| 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~s~~~-~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r-   77 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG--------LTTVD-AA-SLISAALISRWFGALMFGLWGDRYGRR-   77 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CChhh-HH-HHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence            45555555554444444444444345554432211        11110 11 35677888888888877753 222232 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHH
Q psy1201          82 WWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSL  161 (179)
Q Consensus        82 ~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l  161 (179)
                      +.+....   ++..-..+++..         .++-+...+..++.|+..|-.......+..+..+++||..+..+.....
T Consensus        78 ~~~~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  145 (405)
T TIGR00891        78 LPMVTSI---VLFSAGTLACGF---------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY  145 (405)
T ss_pred             HHHHHHH---HHHHHHHHHHHH---------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence            3332222   222222222221         1244556677788888888777777778888888899988888888777


Q ss_pred             HHHHHHHHHHHHh
Q psy1201         162 GVGLAGGSGLGLF  174 (179)
Q Consensus       162 ~~Gl~~Gs~~s~~  174 (179)
                      ..|..+|..++-.
T Consensus       146 ~~g~~~~~~l~~~  158 (405)
T TIGR00891       146 AVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777766543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.67  E-value=0.29  Score=40.49  Aligned_cols=111  Identities=12%  Similarity=0.040  Sum_probs=72.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..++.....+. +.-++ ++.+....+...+..-+..+....+.       .+-+..++..++.|+.+|-..
T Consensus        39 ~~~~~~~~~~i~~~~~G~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~  110 (365)
T TIGR00900        39 AALAGMLPYVVLSPIAGALADRYDR-KKVMIGADLIRAVLVAVLPFVALLGG-------LNIWQVYVLAGILAIAQAFFT  110 (365)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHH
Confidence            5678888888887776542 22222 23333333334333222222221110       245666778888899999998


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF  174 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~  174 (179)
                      +....+.++..+++||..+-.+.......|..+|..++-.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  150 (365)
T TIGR00900       111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL  150 (365)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999888888888888887766533

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.55  E-value=0.16  Score=35.78  Aligned_cols=59  Identities=22%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      +-+...+..++.|+..|...+....+.++..++++|..+..+.......|..+|..++-
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG  108 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence            44566777889999999988888888889888888888888877777777777765543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=95.55  E-value=0.08  Score=43.35  Aligned_cols=108  Identities=24%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.+++.+++...++. +.-++| +++....+...+...+..++            ++.+...+..++.|+..|..
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~  104 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYLSDRFGRR-RVLLLGLLLFALGSLLLAFA------------SSLWLLLVGRFLLGLGGGAL  104 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHcccccc
Confidence            35778889999988877653 222233 34434444444333332221            34567778888899999998


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      ......+.++..++|||..+-.+.......|..+|..++-.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  146 (352)
T cd06174         105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL  146 (352)
T ss_pred             cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999998888888888888887766443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.29  E-value=0.19  Score=43.75  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHH
Q psy1201          12 WMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSI   89 (179)
Q Consensus        12 ~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~   89 (179)
                      +......++.......++|-+....+.+.    .|+. ..+.. ....+++.+.+.+...++.  ++. + ++.+....+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~-~~~gl-~~~~~~l~~~~~~~~~G~l~dr~g-~-k~~l~~~~~   84 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL----GWAA-VMVGI-ALGLRQFIQQGLGIFGGAIADRFG-A-KPMIVTGML   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcH-HHHHH-HHHHHHHHHHHHHhhhhHHHHHhC-c-hHHHHHHHH
Confidence            44445556666666677777665433221    2321 11333 5667777776665554432  222 2 233333333


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201          90 SRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS  169 (179)
Q Consensus        90 ~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs  169 (179)
                      ...+   .++.+..         -++-+..++..++.|+.+|..........++..++|+|..+-.+.....+.|..+|.
T Consensus        85 ~~~~---~~~~~~~---------~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~  152 (400)
T PRK11646         85 MRAA---GFATMAI---------AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGA  152 (400)
T ss_pred             HHHH---HHHHHHH---------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332   2222321         124456677778889988887766666677778888888888888888888887776


Q ss_pred             HHH
Q psy1201         170 GLG  172 (179)
Q Consensus       170 ~~s  172 (179)
                      .++
T Consensus       153 ~l~  155 (400)
T PRK11646        153 LLG  155 (400)
T ss_pred             HHH
Confidence            655

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.13  E-value=0.32  Score=43.42  Aligned_cols=106  Identities=18%  Similarity=0.312  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhh
Q psy1201          52 TPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN  130 (179)
Q Consensus        52 ~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tn  130 (179)
                      ++. ..+.|.++-++|..+.++. ++ +++ +.+....  =+.-+.+..+.-.         =++.+...+.+++.|+++
T Consensus       249 vs~-~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-~~l~~~~--~l~a~~~l~l~~~---------~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         249 VSL-VLLAFGIAGFIGNLLGGRLADR-GPR-RALIAAL--LLLALALLALTFT---------GASPALALALLFLWGFAF  314 (394)
T ss_pred             HHH-HHHHHHHHHHHHHHHHhhhccc-cch-hHHHHHH--HHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHh
Confidence            454 5789999999999998864 33 233 2221111  1111222222211         124466677777777777


Q ss_pred             hhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         131 GYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       131 Gyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +=....--+.--+ ..||++|.++.++.-+.|.|+.+|+.++
T Consensus       315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG  355 (394)
T COG2814         315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG  355 (394)
T ss_pred             hhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443322222222 4579999999999999999999999886

>TIGR00893 2A0114 d-galactonate transporter

Probab=95.12  E-value=0.23  Score=41.12  Aligned_cols=106  Identities=19%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|....++. +.-+++ +.+....+...+..   .++..         .++-+..++..++.|+..|..
T Consensus        33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~l~g~~~~~~   99 (399)
T TIGR00893        33 YVFSAFSWGYVVGQFPGGWLLDRFGAR-KTLAVFIVIWGVFT---GLQAF---------AGAYVSLYILRVLLGAAEAPF   99 (399)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCcc-eeeHHHHHHHHHHH---HHHHH---------HcCHHHHHHHHHHHHHHHHhh
Confidence            35778888988888877653 222222 33322222222221   12221         124466677888999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      .+....+.++..++|||..+-.+.......|..+|..++-
T Consensus       100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893       100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            9888899999999999998888888888888888876654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=94.96  E-value=0.37  Score=40.50  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=66.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|..+.++. +..++ ++++....   ++..-..+++..         .++.+..++..++.|+..|...
T Consensus        45 ~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~  111 (385)
T TIGR00710        45 TLTLYLLGFAAGQLLWGPLSDRYGR-RPVLLLGL---FIFALSSLGLAL---------SNNIETLLVLRFVQAFGASAGS  111 (385)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCC-hHHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHcchhHHH
Confidence            5678888888888877653 22223 33332222   222222222221         1244566777788899999888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +......++..++++|..+-.+.......|..+|..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  149 (385)
T TIGR00710       112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG  149 (385)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888777777777777777776554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12382 putative transporter; Provisional

Probab=94.94  E-value=0.31  Score=41.74  Aligned_cols=153  Identities=20%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHH
Q psy1201          10 SIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFS   88 (179)
Q Consensus        10 ~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~   88 (179)
                      ..+...++.++.++..-..-|-+...++++... +.+   . .. .....+.++..+++...++. +.-++| +.+....
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~-s~~---~-~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~r-~~l~~~~   88 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF-GNT---M-VG-IAVGIQFLATVLTRGYAGRLADQYGAK-RSALQGM   88 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC-cHH---H-HH-HHHHHHHHHHHHHhhhhhHHHHhhcch-HHHHHHH
Confidence            344444555555554334455544333322111 122   1 23 36788999999887776653 222233 3332322


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1201          89 ISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGG  168 (179)
Q Consensus        89 ~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~G  168 (179)
                      +...+..-.+.++...+..    .-.+-+...+.-++.|+..|...+....+.++..++|||..+-..+......|..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVS----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHhhhccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            3333222222233322211    012334455666778888887777777777888888888888777777788888777


Q ss_pred             HHHHH
Q psy1201         169 SGLGL  173 (179)
Q Consensus       169 s~~s~  173 (179)
                      ..++-
T Consensus       165 ~~~~~  169 (392)
T PRK12382        165 APLGL  169 (392)
T ss_pred             HHHHH
Confidence            77653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=94.47  E-value=0.33  Score=41.56  Aligned_cols=153  Identities=15%  Similarity=0.059  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHH
Q psy1201           9 GSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLF   87 (179)
Q Consensus         9 k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~   87 (179)
                      |+.....++.++.++-.-...|.+...++.+..    +++.. .. .....+.++..++....++. +.-++| +.+...
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g----~s~~~-~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~r-~~l~~~   87 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLG----FSAFL-AG-LVISLQYLATLLSRPHAGRYADTLGPK-KAVVFG   87 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHH-HH-HHHHHHHHHHHHhchhhHhHHhccCCc-chHHHH
Confidence            344445555555555544455555544432221    21111 23 36778889998888877753 222233 333233


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1201          88 SISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAG  167 (179)
Q Consensus        88 ~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~  167 (179)
                      .+...+......+....+.  .+  ..+-+..++.-++.|+..|-.......+.++..+++||..+..+.......|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         88 LCGCALSGLLYLLAGLLAA--WP--VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhc--cc--hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            3333322222212211110  00  1122345666678899888877777777788888888887777777777777777


Q ss_pred             HHHHH
Q psy1201         168 GSGLG  172 (179)
Q Consensus       168 Gs~~s  172 (179)
                      |..++
T Consensus       164 g~~l~  168 (399)
T PRK05122        164 GAPLG  168 (399)
T ss_pred             HHHHH
Confidence            66664

>TIGR00898 2A0119 cation transport protein

Probab=94.45  E-value=0.67  Score=41.13  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.+|-.+|..+.++. ..-++ ++.+....   ++..-..+++..         -++-+..++.-++.|+..|-.
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l~Dr~Gr-r~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~r~l~G~~~~~~  197 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYLSDRFGR-KKVLLLST---LVTAVSGVLTAF---------SPNYTVFLVFRLLVGMGIGGI  197 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccc-hHHHHHHH---HHHHHHHHHHHH---------cccHHHHHHHHHHHHhhccch
Confidence            35778899999998887754 22222 23332222   222222222221         134466778888999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      ......+..+..++++|..++.+.......|..+|..++..+
T Consensus       198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988888888888887776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.35  E-value=0.94  Score=39.31  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|+.+.... +.-+ +++.+....+...   -..+++..         .++-+..++.-++.|+.+|-..
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~Dr~g-rr~~~~~~~~~~~---~~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~  126 (394)
T PRK10213         60 SVTVTAFVAMFASLFITQTIQATD-RRYVVILFAVLLT---LSCLLVSF---------ANSFSLLLIGRACLGLALGGFW  126 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHHH---HHHHHHHH---------HChHHHHHHHHHHHHHhhHHHH
Confidence            4567888888888877653 2222 2233322222222   22233331         2355667777789999999888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      ..+..+.++..++|+|..+-.......+.|..+|..++-
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888887777777666777776666553

>PRK10054 putative transporter; Provisional

Probab=94.24  E-value=0.7  Score=40.13  Aligned_cols=148  Identities=11%  Similarity=0.019  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccceeeeeeecCCCCCCCCcccchHHHHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHH
Q psy1201           9 GSIWMHGLAVCLCFLVSLSLYPSITSLVKSTSPVHTEWTDKYFTPVIAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLF   87 (179)
Q Consensus         9 k~~~~~~~~ifl~f~vTl~vFPgi~~~i~s~~~~~~~w~~~~f~pvi~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~   87 (179)
                      |..+...++.++..+....+.|-+....+++.    .|++.. + -.....+.++..+++...++. +.-++| +.+...
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~----g~s~~~-~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-~~~~~~   79 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQY----SLSVDL-I-GYAMTIALTIGVVFSLGFGILADKFDKK-RYMLLA   79 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHH-H-HHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhHHHH
Confidence            34555555556665555566665554433221    232111 1 134566777777777666543 221222 333333


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy1201          88 SISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAG  167 (179)
Q Consensus        88 ~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~  167 (179)
                      .+...+-..++.+            .++-+..++...+.+...+-.........++..++++|..+-.+.....++|..+
T Consensus        80 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i  147 (395)
T PRK10054         80 ITAFASGFIAIPL------------VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV  147 (395)
T ss_pred             HHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence            3334333222211            1232333333444555444444445555677778888888877777777888888


Q ss_pred             HHHHHHhh
Q psy1201         168 GSGLGLFK  175 (179)
Q Consensus       168 Gs~~s~~~  175 (179)
                      |..++-.+
T Consensus       148 gp~l~~~l  155 (395)
T PRK10054        148 GPPLGTLL  155 (395)
T ss_pred             HHHHHHHH
Confidence            87665443

>TIGR00895 2A0115 benzoate transport

Probab=94.19  E-value=0.8  Score=38.32  Aligned_cols=104  Identities=20%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|..+..+. +.-+ +++++....+.-.+   ..+++..         .++-+..++..++.|+..|...
T Consensus        57 ~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~  123 (398)
T TIGR00895        57 LFSAGLIGMAFGALFFGPLADRIG-RKRVLLWSILLFSV---FTLLCAL---------ATNVTQLLILRFLAGLGLGGLM  123 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhh-hHHHHHHHHHHHHH---HHHHHHH---------ccchHHHHHHHHHHhcccccch
Confidence            5677888888888776653 2211 22333222221111   1122221         1244556677888899999888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+..+..++++|..+-.+.......|..+|..++
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  161 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA  161 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888887665

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.88  E-value=0.66  Score=37.85  Aligned_cols=106  Identities=20%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|+....+. ++-+++++.+...   -.+.....++...         .++-+...+..++.|+..|..
T Consensus       215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~  282 (352)
T cd06174         215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG---LLLAALGLLLLAL---------APSLALLLVALLLLGFGLGFA  282 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHhcc
Confidence            36778899999999987753 2211221022111   1222111111211         123466778888999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .+....+..+..++++|..+-.+....-..|..+|..++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  321 (352)
T cd06174         283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA  321 (352)
T ss_pred             chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888888888888888877777665

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=93.76  E-value=0.74  Score=37.90  Aligned_cols=106  Identities=20%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.++....++. +.-+ +++.+....+.+.+.   .+++...         ++.+..++..++.|+.+|...
T Consensus        37 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~l~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~l~g~~~~~~~  103 (352)
T PF07690_consen   37 LFSAFFLGSALFSPFAGYLSDRFG-RRRVLIIGLLLFALG---SLLLAFA---------SNFWLLLIARFLLGIGSGFFS  103 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHH---HHHHHHH---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-CeeeEeehhhhhhhH---HHHhhhh---------hhHHHHhhhcccccccccccc
Confidence            5677888888888777653 2222 233443444444433   1111110         356778889999999999999


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF  174 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~  174 (179)
                      .....+.++..+++||+.+-.+.......|..+|..++-.
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  143 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF  143 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence            9999999999999999999989998999998888776643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=93.65  E-value=1  Score=40.27  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=77.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+++|-.+|..+..+. +.-+++ +.+....+.=.+..   +++...+.. .|  ..+-+..++.-++.|+..|-.
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-~~~~~~~~~~~v~~---~~~~~~~~~-~~--~~~~~~~~~~r~l~G~~~g~~  132 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRK-RVYGMELIIMIIAT---VASGLSPGS-SP--KSVMATLCFWRFWLGVGIGGD  132 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHH---HHHHHccCc-cc--chHHHHHHHHHHHHHHHHhhh
Confidence            35778899999999988764 222222 22222222122211   222222111 01  123457788888999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      .+....+..+..++++|..+..++..+..+|..+|..++..+
T Consensus       133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=93.53  E-value=0.71  Score=45.20  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      ....+|.++=.++..+.++. ..-+ +++.+....+++.++.-+..++..         .++-+..++..++.|+..|..
T Consensus        51 ~~~~~~~l~~~l~~~~~G~l~Dr~g-rk~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~  120 (1146)
T PRK08633         51 IVNALFLLPFLLLSSPAGFLADKFS-KNRVIRIVKLFEVGLTLLIVLAYY---------LGWFWLAFAVTFLLGAQSAIY  120 (1146)
T ss_pred             HHHHHHHHHHHHHhhhHhhhccccc-HHHHHHHHHHHHHHHHHHHHHHHH---------HccHHHHHHHHHHHHHHHHhh
Confidence            35667888888877776653 2222 223343444556666555555532         134466677778889999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF  174 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~  174 (179)
                      ......+.++.+++++|..+..+.......|..+|..++-.
T Consensus       121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~  161 (1146)
T PRK08633        121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSF  161 (1146)
T ss_pred             chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99888899999999999998888888888888888776543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=93.39  E-value=1.3  Score=36.64  Aligned_cols=106  Identities=11%  Similarity=0.077  Sum_probs=65.1

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....++++..+|+....+......+++.. ..+. =..-+.++.+. ..     +   ++-+...+..+++|+..|-...
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~g~~~~~~~~  320 (365)
T TIGR00900       252 VLAAFGLGALLGALLLGLLGRYFKRMALM-TGAI-FVIGLAILVVG-LT-----P---PNFPLFLVLWFAIGVGYGPINV  320 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHHH-HHHH-HHHHHHHHHHH-hh-----c---hhHHHHHHHHHHHHHHHHHHHH
Confidence            56678888888888876532211222222 1110 01111111111 11     0   0245567778888999988888


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ....+..+.+++++|..+-.+.......|..+|..++
T Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999988888888877778777776653

>TIGR00895 2A0115 benzoate transport

Probab=93.34  E-value=1.9  Score=36.03  Aligned_cols=104  Identities=13%  Similarity=0.025  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....++++..+|+.+..+. +..+++ +.. .....-  .+-.+++...         .++.+...+..+++|+..|-.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~  355 (398)
T TIGR00895       289 TGGALFNFGGVIGSIIFGWLADRLGPR-VTA-LLLLLG--AVFAVLVGST---------LFSPTLLLLLGAIAGFFVNGG  355 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchH-HHH-HHHHHH--HHHHHHHHHH---------hhCHHHHHHHHHHHHHHHHHH
Confidence            35678889999999988764 222122 222 111111  1111111110         134556677778888888877


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      .+....+..+..++++|..+-.++......|..+|..+
T Consensus       356 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       356 QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788888888888888877766666667777777654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=93.19  E-value=1.1  Score=39.21  Aligned_cols=108  Identities=19%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHh-hcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLC-NIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc-~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      .....+++..+|+.+..+..-+..+++.+......-.  +-...+. ...+.       .+.+.....+++.|+..|...
T Consensus       296 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~g~~~~~  366 (485)
T TIGR00711       296 HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYA--VGFYWRAFTFTPD-------TPFLAIALPQFIRGFGMGCFF  366 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH--HHHHHHhccCCCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999888764211122232211111111  1111111 11111       133445566778888888877


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ...+..+.+.++++++..+..+..+.-..|-.+|..+.
T Consensus       367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677778888888888888888888888876653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=93.12  E-value=1.6  Score=37.69  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....+.++..+|+.+..+......+++.+....+   +....+++...         .++-+...+.++++|+..|....
T Consensus       264 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~  331 (417)
T PRK10489        264 LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL---GSFLAVGLFGL---------MPMWILAVLCLALFGYLSAISSL  331 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH---HHHHHHHHHHc---------cchHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999887764222122223322211   11111111111         12334556777788888877666


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ....+..+..++++|..+-.++......|..+|..+.
T Consensus       332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~  368 (417)
T PRK10489        332 LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL  368 (417)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence            6666666677888888887777777777777776654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=93.07  E-value=1.3  Score=37.06  Aligned_cols=103  Identities=15%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc-chhHHHHHHHHHHhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLIT-SDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~-~d~~~~~~~~lfg~tnGyl  133 (179)
                      ....+.+++.++....++. +.-+++ +.+....   ++.....+++..         .+ +-+...+..++.|+.+|..
T Consensus        42 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~  108 (366)
T TIGR00886        42 LVAVPVLAGAVLRIILGFLVDKFGPR-YTTTLSL---LLLAIPCLWAGL---------AVQSYSVLLLLRLFIGIAGGSF  108 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHH---HHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhchhh
Confidence            5678888888888877753 222222 3332222   222222222221         12 4455566777788887755


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                       +.+..+..+..+++||..+..+.....+.|..+|..++
T Consensus       109 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       109 -ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             -HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence             34555666677888888887777766666766666554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=93.06  E-value=0.72  Score=40.94  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             HHHHHHHhhhhhhhhhhccc-CCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQ-WPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~-~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.+++.++|.+..+.. ....+++....+..+-+.....++++..         .++.+..++..+++|+++|-..
T Consensus       281 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---------~~~~~~~~i~~~~~G~~~g~~~  351 (455)
T TIGR00892       281 LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---------AGDYTGLVIYCIFFGLSFGSVG  351 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHhchHH
Confidence            45677888999887766532 1101111111222222222222233321         1344566777889999999888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.......+.++++++..+-.++......|-.+|..++
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence            88777888888888888887777777777877776543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=92.99  E-value=2.1  Score=36.56  Aligned_cols=102  Identities=20%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+||.+..+. +..++ ++.. ...  -.+....+++...         .++.+...+..+++|+..|-..
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~~~-~~~~-~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~~~~~  320 (399)
T PRK05122        254 ALTLFGVAFVGARLLFGNLINRLGG-LRVA-IVS--LLVEILGLLLLWL---------APSPWMALIGAALTGFGFSLVF  320 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-HHHH-HHH--HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHhHHHHH
Confidence            3567888889999887753 22122 2322 111  1222222222221         1244555666778888877554


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG  170 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~  170 (179)
                      .......-+..++|+|..+-.++......|..+|..
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  356 (399)
T PRK05122        321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP  356 (399)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444344446677788888777777777777655543

>PRK12382 putative transporter; Provisional

Probab=92.80  E-value=1.4  Score=37.66  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=58.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|+....+. +..+++ +.+.....   +....+++...         .++.+...+..++.|++.|-..
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~g~~-~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~  320 (392)
T PRK12382        254 TLTAFGGAFVLMRVLFGWMPDRFGGV-KVAIVSLL---VETVGLLLLWL---------APTAWVALAGAALTGAGCSLIF  320 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-eehHHHHH---HHHHHHHHHHH---------cccHHHHHHHHHHHHHHHHhHH
Confidence            3456788888888776543 222222 33322222   22222211111         1233455666777888887655


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ........+..++++|..+-.+.......|-.+|..++
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55545555667778887777777777777777776543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=92.64  E-value=2.5  Score=35.63  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|+...++. +..+++ +++....   ++.....+++..         .++-+...+..++.|+..|...
T Consensus        31 ~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~---~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~~~~~~~   97 (377)
T PRK11102         31 TLSAYILGFAIGQLFYGPMADSFGRK-PVILGGT---LVFALAAVACAL---------AQTIDQLIYMRFLHGLAAAAAS   97 (377)
T ss_pred             HHHHHHHHHHHHHHhhchHHhhcCCh-HHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888887653 222232 3332222   222222222221         1233555677778888888887


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+.++..+++||..+..+.......|..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG  135 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777778888888888887777777777777776654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=92.10  E-value=2.2  Score=38.19  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.+.....+++.|+..|.........+-+.++++++..++.+....-++|.++|..++
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3344566788889999988776666666778999999999999999999988887654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=92.10  E-value=3.5  Score=35.04  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.+++.++....++. +.- .+++.+....   ++.....+++..         .++-+..++..++.|+..|+..
T Consensus        59 ~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~  125 (408)
T PRK09874         59 VFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA---LGMGIVMVLMGL---------AQNIWQFLILRALLGLLGGFVP  125 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH---HHHHHHHHHHHH---------HhhHHHHHHHHHHHHHhhhhHH
Confidence            5677888888877765542 221 2223332222   222222222221         1244556666777888777654


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      . .....++..++++|..+-.........|..+|..++
T Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874        126 N-ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             h-HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3 444556667777776665555555555655554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=92.03  E-value=2.7  Score=35.88  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|....++. ..-++ ++++....   +++....+++...         ++-+..++..++.|+.+|..
T Consensus        42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~-r~~l~~~~---~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~~~~~~  108 (392)
T PRK10473         42 IAFSVYLAGMAAAMLFAGKIADRSGR-KPVAIPGA---ALFIIASLLCSLA---------ETSSLFLAGRFLQGIGAGCC  108 (392)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhCC-hHHHHHHH---HHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhhhHH
Confidence            35677888888877766653 22122 23332222   2222222223211         13344556667889998888


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......+.++..+++||..+-.........|..+|..++
T Consensus       109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~  147 (392)
T PRK10473        109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG  147 (392)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877888888888888888776665555555555555544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=91.98  E-value=1.6  Score=38.04  Aligned_cols=105  Identities=11%  Similarity=0.047  Sum_probs=64.5

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....|.++=.+|....++. +.- .+++.+ ...  =+++....+++..         -+|-+..++.-++.|+.+|-..
T Consensus        48 ~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~~  114 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIMLAII-GARRWI-AGI--MVLWGIASTATMF---------ATGPESLYLLRILVGIAEAGFL  114 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHh-ChHHHH-HHH--HHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHHHhhHH
Confidence            4567777777777666542 111 122322 222  1222222222322         1344566677788899998777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      ...+.+..+..++++|..+..+.......|..+|..++-
T Consensus       115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332       115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788888899988888888788888877776653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=91.91  E-value=2.3  Score=36.35  Aligned_cols=105  Identities=15%  Similarity=0.047  Sum_probs=60.9

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....++++..+|+.+..+..-...+++.+ .....-. .+-+.. ...         ..+.+...+..+++|+..+-..+
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~-~~~~~~-~~~---------~~~~~~~~~~~~~~g~~~~~~~~  327 (406)
T PRK11551        260 VQIAFNIGGALGSLLIGALMDRLRPRRVV-LLIYAGI-LASLAA-LAA---------APSFAGMLLAGFAAGLFVVGGQS  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-HHHHHH-HHh---------cCcHHHHHHHHHHHHHHHHhHHH
Confidence            56788999999999887642111122222 1111111 111111 111         12334445556667776655566


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ..+...++..++++|..+-.++...-..|..+|..+.
T Consensus       328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  364 (406)
T PRK11551        328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA  364 (406)
T ss_pred             HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence            6777788888888888877777777777777776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=91.88  E-value=1.1  Score=36.81  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy1201         114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGG  168 (179)
Q Consensus       114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~G  168 (179)
                      ++..+.....+++|+..|........+..+.+++|++..+..+....-++|..+|
T Consensus       297 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  297 SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            3556777788889999999999999999999988898888888888888777765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=91.75  E-value=0.46  Score=39.41  Aligned_cols=101  Identities=18%  Similarity=0.079  Sum_probs=64.7

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|....++. +.-+++ +.+....+.-.+   ..+++..         .++-+..++..++.|+..|-..
T Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~  101 (379)
T TIGR00881        35 LLSSFSIAYGISKFVMGSVSDRSNPR-VFLPIGLILCAI---VNLFFGF---------STSLWVMAALWALNGIFQGMGW  101 (379)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhhCCe-ehhHHHHHHHHH---HHHHHHH---------hhhHHHHHHHHHHHHhhccccC
Confidence            5678889999988887753 222222 333222222222   1222221         1244566777788899888888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS  169 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs  169 (179)
                      .....+.++..+++||..+..+.......|..+|.
T Consensus       102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881       102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             CchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence            88888888888888888877777777777777776

>KOG2504|consensus

Probab=91.72  E-value=0.87  Score=41.78  Aligned_cols=99  Identities=20%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      +..+-++.|.+||.+..+. ..+..+.+++..+++....+-.++  +.         +-++-+..+..-.++|++-|+..
T Consensus       338 l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~--~p---------~~~~~~~l~~~~~~fG~~~g~~~  406 (509)
T KOG2504|consen  338 LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF--LP---------FATTYVGLIVFSILFGFCVGSFS  406 (509)
T ss_pred             HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH--HH---------HhccHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999975 444334455555555554443322  21         11233677888889999999999


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL  165 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl  165 (179)
                      ++.-....+.+..++-..|-.+..++...+.
T Consensus       407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~  437 (509)
T KOG2504|consen  407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGA  437 (509)
T ss_pred             HHHHHHHHHHcChhhcchHHHHHHHHhHHHH
Confidence            9988777777765444433333333333333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=91.69  E-value=1.3  Score=36.67  Aligned_cols=109  Identities=14%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....++++..+|+.+..+. ++...+++........=....-+..+.. .+       ..+.+...+..+++|...+-.
T Consensus       256 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~g~~~~~~  327 (379)
T TIGR00881       256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-NP-------AANPLMDLICLFALGFLVYGP  327 (379)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-Cc-------chhHHHHHHHHHHHHHHHhhh
Confidence            35678899999999988753 2111122222111110111111111111 11       123344445555566543323


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      ......+..+.+++++|..+..+....-..|..+|..+
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  365 (379)
T TIGR00881       328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP  365 (379)
T ss_pred             hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence            33333455667778888888888877777777776544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=91.59  E-value=1.9  Score=37.72  Aligned_cols=104  Identities=20%  Similarity=0.291  Sum_probs=68.7

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....|.++..+|..+..+. +.-++ ++.+....   +++.-..++|..         -+|-+..++..++.|+..|...
T Consensus        42 ~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~~~G~~~~~~~  108 (485)
T TIGR00711        42 VITSYMLANAISIPLTGWLAKRFGT-RRLFLIST---FAFTLGSLLCGV---------APNLELMIIFRVIQGFGGGPLI  108 (485)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCc-HHHHHHHH---HHHHHHHHHHhC---------cCCHHHHHHHHHHHHhhhhhHH
Confidence            4567888888887776653 22222 23332222   233333333432         1344566777888899999999


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+.++..++++|..+-.+.......|..+|..++
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  146 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG  146 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence            99999999999999998888887777777777776554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=91.57  E-value=3.2  Score=35.52  Aligned_cols=101  Identities=18%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....++++-.+|.....+. +..+ +++.+...   -.+.....+++...         +|-+...+..++.|+..|-..
T Consensus        43 ~~s~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~---~~~~~~~~~l~~~~---------~~~~~l~~~r~l~G~~~~~~~  109 (382)
T PRK10091         43 MISYYALGVVVGAPIIALFSSRYS-LKHILLFL---VALCVIGNAMFTLS---------SSYLMLAIGRLVSGFPHGAFF  109 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCc-cHHHHHHH---HHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhhhHHHH
Confidence            5678899999998887763 2222 22333222   22233333334321         345666777888899888766


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGS  169 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs  169 (179)
                      ........+..++++|..+-.+.......|..+|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  144 (382)
T PRK10091        110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI  144 (382)
T ss_pred             HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc
Confidence            66666666666666666554444444444444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=91.52  E-value=1.4  Score=36.51  Aligned_cols=105  Identities=13%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+++++.+|+....+. +.-+++ +.+....+.   .....++....+ +      .+.+..+....+.++..|-..
T Consensus       245 ~~~~~~~~~~~~~~~~g~l~dr~g~~-~~~~~~~~~---~~~~~~~~~~~~-~------~~~~~~~~~~~~~g~~~g~~~  313 (377)
T TIGR00890       245 AVSISSIFNGGGRPFLGALSDKIGRQ-KTMSIVFGI---SAVGMAAMLFIP-M------LNDVLFLATVALVFFTWGGTI  313 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHH---HHHHHHHHHHcc-c------chhHHHHHHHHHHHHHhccch
Confidence            5678889999999887763 221122 222111111   111111111111 0      123334455566777777666


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      +....+.++..++++|..+-.+.......|..+|..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~  350 (377)
T TIGR00890       314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI  350 (377)
T ss_pred             hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            6655566677777777776666666667777666654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=91.51  E-value=4.6  Score=34.51  Aligned_cols=104  Identities=19%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|.....+. +.-+++ +.+ ...  -++.....+++..         .++.+...+..++.|+..|...
T Consensus        55 ~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~-~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~~~~~  121 (406)
T PRK11551         55 AFSAGILGLLPGALLGGRLADRIGRK-RIL-IVS--VALFGLFSLATAQ---------AWDFPSLLVARLLTGVGLGGAL  121 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCc-hhH-HHH--HHHHHHHHHHHHH---------hccHHHHHHHHHHHHhhHHHHH
Confidence            5678888888888877653 222222 322 222  2233333333332         2355666777888899988888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+..+..++|+|..+-.+.......|..+|..++
T Consensus       122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551        122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888889998888877777777777776655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=91.46  E-value=1.6  Score=37.83  Aligned_cols=56  Identities=18%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +...+..++.|+..|...+......|+.++++++..+..+.......|..+|..++
T Consensus       111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~  166 (417)
T PRK10489        111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALG  166 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence            44556667778888887777777888999998888888887777777777777665

>KOG0569|consensus

Probab=91.15  E-value=2.6  Score=38.68  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHH----HHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFM----PLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSN  130 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fi----Plf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tn  130 (179)
                      ...+|-+|-.+|-+...+. ...+++ ..+ .+   |.++.    .++.+|.         ..++-...++-=++.|+..
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK-~~l-~~---~~~l~~~~~~~~~~s~---------~~~~~e~li~GR~i~Gl~~  130 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRK-NAL-LL---SNLLAVLAALLMGLSK---------SAPSFEMLILGRLIVGLAC  130 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcch-HHH-HH---HHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHh
Confidence            5788999999999988764 333232 222 22   33332    2223232         2456567788888999999


Q ss_pred             hhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         131 GYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       131 Gyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      |-..+...||--|..|++.|...|.+..++.+.|..+|..++.
T Consensus       131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l  173 (485)
T KOG0569|consen  131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL  173 (485)
T ss_pred             HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999987764

>KOG3880|consensus

Probab=91.08  E-value=1  Score=39.63  Aligned_cols=107  Identities=21%  Similarity=0.325  Sum_probs=72.7

Q ss_pred             HHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh--hhhh
Q psy1201          58 LVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG--YLAN  135 (179)
Q Consensus        58 ~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG--yl~t  135 (179)
                      ..|++|=++.|..-+..+.|  .   ++.++++.++=.-.|++-..-      -+-++.|..+++++.=|+-.|  |++|
T Consensus       295 vlYQlGVFiSRSS~~~~~~p--~---l~~LailQ~vNl~ff~~~a~~------~ftpsi~ivf~lI~~EGLlGGasYVNT  363 (409)
T KOG3880|consen  295 VLYQLGVFISRSSINLFTMP--Y---LWLLAILQFVNLLFFLLQAWY------WFTPSIWIVFALILFEGLLGGASYVNT  363 (409)
T ss_pred             eeeeeeEEEEeccceEEech--H---HHHHHHHHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHhhcCchHHHHH
Confidence            48999999999999988886  2   335566666544444433221      112344555555555466655  4444


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFKDY  177 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~~~  177 (179)
                        .-.--+++++++||.|=...+.+=+.|+...+++|+.+..
T Consensus       364 --f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~  403 (409)
T KOG3880|consen  364 --FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN  403 (409)
T ss_pred             --HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence              2333566899999999999999999999999999987754

>PRK12307 putative sialic acid transporter; Provisional

Probab=91.01  E-value=4.8  Score=34.60  Aligned_cols=103  Identities=14%  Similarity=0.085  Sum_probs=62.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|....++. +.-+++ +.+ ...  -++......++..         .++-+..++.-++.|+..|-..
T Consensus        58 ~~~~~~~~~~l~~~~~g~l~dr~g~r-~~l-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~g~g~~~  124 (426)
T PRK12307         58 LATAAFIGRPFGGALFGLLADKFGRK-PLM-MWS--IVAYSVGTGLSGL---------ASGVIMLTLSRFIVGMGMAGEY  124 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCh-HHH-HHH--HHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHhhHH
Confidence            5667778877777766653 221222 322 221  2222222222221         1244556666778888888777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      +....+..+..++|+|..+..+......+|..+|..+
T Consensus       125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l  161 (426)
T PRK12307        125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF  161 (426)
T ss_pred             HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence            7777777888888888888777777777777776654

>TIGR00898 2A0119 cation transport protein

Probab=90.96  E-value=8.3  Score=34.11  Aligned_cols=107  Identities=10%  Similarity=0.050  Sum_probs=55.5

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ......+.+..|+.+..+..-...+++.+.+..+.-.+..-+....   +.       .+.+......++.++..+-..+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~  429 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PV-------DLYFLRTALAVLGKFGITSAFQ  429 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CC-------CchHHHHHHHHHHHHHHHHHHH
Confidence            4456788888998887653211112222222221111111111111   10       1123444445555555555556


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ....+.++..+++.|..+-.+.+.....|-.+|..+.
T Consensus       430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~  466 (505)
T TIGR00898       430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV  466 (505)
T ss_pred             HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence            6777888888888888776666666666666655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=90.81  E-value=4  Score=35.08  Aligned_cols=103  Identities=11%  Similarity=0.096  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.++....+.. +.-++| +++....   .+.....+++..         .++.+..++..++.|+..|...
T Consensus        53 ~~~~~~~~~~~~~~~~G~l~dr~g~r-~~l~~~~---~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~  119 (406)
T PRK15402         53 SMTAYLAGGMFLQWLLGPLSDRIGRR-PVMLAGV---AFFILTCLAILL---------AQSIEQFTLLRFLQGIGLCFIG  119 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHH---HHHHHHHHHHHH---------HccHHHHHHHHHHHHhHhhhHH
Confidence            4567888887777766542 221222 3332221   222222222221         1233455666677788887776


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      ........+..+++++..+-.++......|..+|..+
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  156 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV  156 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666554334333333444444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=90.79  E-value=4.7  Score=34.55  Aligned_cols=100  Identities=12%  Similarity=-0.004  Sum_probs=60.0

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHH---HHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVL---LFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNG  131 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~---~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnG  131 (179)
                      .+....++..++..+..+. +..+++ +.+.   ....+|....+.               .++.+..++.+++-|++-|
T Consensus       245 l~~~~~~~~i~~~~~~~~l~~r~g~~-~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~q~l~g~~~~  308 (382)
T TIGR00902       245 LWGIGVLAEIIIFAFSNKLFQNCSAR-DLLLISAIACVGRWAIIGA---------------IEAFPLIFLLQILHCGTFA  308 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhCCHH-HHHHHHHHHHHHHHHHHHh---------------HhhHHHHHHHHHHHHHHHH
Confidence            4566778888887776542 222222 2221   223334332211               2355777888999999999


Q ss_pred             hhhhhhhhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1201         132 YLANITFICAAKQVDPHEQEV-ASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       132 yl~tl~m~~ap~~v~~~~~e~-aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      -+...+|.+..+. +++++.. -|...+.....|..+|+.++
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~  349 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA  349 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988876 6555533 22223445566777666554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00893 2A0114 d-galactonate transporter

Probab=90.74  E-value=2.5  Score=34.95  Aligned_cols=56  Identities=11%  Similarity=0.023  Sum_probs=39.4

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      +.+.......+.+...| .......+..+..++++|..+..+....-..|-.+|..+
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i  366 (399)
T TIGR00893       311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV  366 (399)
T ss_pred             hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence            33444445555566666 667777788888888998888887777778777777654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=90.72  E-value=3.2  Score=35.99  Aligned_cols=104  Identities=14%  Similarity=0.204  Sum_probs=57.6

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....+.++..+|+.+..+...+..+ +.+....+.-.+. -+.+...          -++.+...+..+++|+..|....
T Consensus       257 ~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~-~~~l~~~----------~~~~~~~~~~~~l~G~~~~~~~~  324 (394)
T PRK10213        257 VLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVS-ALVLTLW----------GSDKIVATGVAIIWGLTFALVPV  324 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHH-HHHHHHH----------hhhHHHHHHHHHHHHHHHHhhhH
Confidence            5677889999999887764222222 2221111111111 0111111          12345556677888888887777


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......-+.++ ++++.++........+|..+|+.++
T Consensus       325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~  360 (394)
T PRK10213        325 GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIG  360 (394)
T ss_pred             HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544445554 4455666655566677887777654

>PRK03699 putative transporter; Provisional

Probab=90.54  E-value=2.9  Score=35.96  Aligned_cols=96  Identities=9%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|.....+. +.- .+++.+ ..  ...+.....+++..         -++.+...+..++.|+..|...
T Consensus        47 ~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~-~~--~~~~~~i~~~l~~~---------~~~~~~~~~~~~l~G~~~g~~~  113 (394)
T PRK03699         47 TFTFLNAGILISIFLNAWLMEII-PLKRQL-IF--GFALMILAVAGLMF---------SHSLALFSIAMFVLGVVSGITM  113 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hHHHHH-HH--HHHHHHHHHHHHHH---------cchHHHHHHHHHHHHHhhHhhc
Confidence            4567778888887776653 221 122322 22  23333333333332         1344556677788899888777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVG  164 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~G  164 (179)
                      +.+..+.++..++++|..+-.........|
T Consensus       114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  143 (394)
T PRK03699        114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMA  143 (394)
T ss_pred             cchhHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            666666677666666665544443333333

>PRK03545 putative arabinose transporter; Provisional

Probab=90.36  E-value=4.3  Score=34.73  Aligned_cols=104  Identities=18%  Similarity=0.278  Sum_probs=54.5

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....+.++..+|+....+..-+..+ +.+......  .....+.+-..         -++.+..++..+++|++++..+.
T Consensus       246 ~~~~~~~~~~~g~~~~g~l~dr~~~-~~~~~~~~~--~~~~~~~l~~~---------~~~~~~~~~~~~l~g~~~~~~~~  313 (390)
T PRK03545        246 LLLLFGGAGIIGSVLFSRLGNRHPS-GFLLIAIAL--LLVCLLLLLPA---------ANSEWHLSVLSIFWGIAIMCIGL  313 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHH--HHHHHHHHHHH---------hchHHHHHHHHHHHHHHHhcchH
Confidence            5677889999999988764222122 222111111  11122211111         12345556677788888776655


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......-+.. ++++..+-.+.+.....|..+|..++
T Consensus       314 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~G~~~~  349 (390)
T PRK03545        314 AMQVKVLKLA-PDATDVAMALFSGIFNIGIGAGALLG  349 (390)
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4434433333 34555554555555677777777663

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=90.31  E-value=11  Score=33.15  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....|.++-.+|....++. +.-.++ +.+....+.-. ..++.......         .+-+..++.-++.|+..|-.
T Consensus        80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r-~~l~~~~~~~~-~~~~~~~~~~~---------~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        80 LILSSHFYGQIIIQIPVGYLAGKYVFK-WSIGIGMFLSS-VISIVIPWAAG---------GGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHhCcc-hhhHHHHHHHH-HHHHHHHHHHH---------cCchHHHHHHHHHHHhcccc
Confidence            36778888888888777653 222222 33322222111 12221111111         12245566778899999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......+.++..+++||..+..+......+|..+|..++
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~  187 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS  187 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999889999999999999998888888888887777664

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=90.16  E-value=2.8  Score=41.06  Aligned_cols=107  Identities=18%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      .+...+.++-.+|..+..+..-...+++.+.+..+  ...+-++++..          ..+.+..++..+++|+..|-..
T Consensus       273 ~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~  340 (1146)
T PRK08633        273 YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL--GLALSLFLLPT----------APSLASVLVLFFLFGFSAGLFI  340 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH--HHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHhh
Confidence            35677888888898887764221111122211111  11111222111          1244666777888898888777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      .....+..+.+++++|..+-.+.++...+|..+|..++.
T Consensus       341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            766666667777777777666666666666655544443

>PRK03699 putative transporter; Provisional

Probab=90.13  E-value=3  Score=35.88  Aligned_cols=100  Identities=10%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             HHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          57 FLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        57 ~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ...+.++..+||.+..+. ++-+++ +.+......-.+...++..+            ++.++..+..+++|+.+|-..+
T Consensus       247 ~~~~~~~~~ig~~~~g~l~dr~~~~-~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~G~~~~~~~~  313 (394)
T PRK03699        247 VSNFWMAYMVGMWIFSFIVRFFDLQ-RILTVLAGLALVLMYLFVNT------------DDPSHLLYAILGLGFFSSAIYT  313 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHc------------CCchHHHHHHHHHHHHHHHHHH
Confidence            455666777788776653 221122 33333333333322222111            1333445566778887766656


Q ss_pred             hhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG  170 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~  170 (179)
                      .....+++..+++..+..|.+.. +-.+|..+|..
T Consensus       314 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~p~  347 (394)
T PRK03699        314 TIITLGSQQTKVASPKLVNFILT-CGTIGTMLTFV  347 (394)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHH-hhhHHHHHHHH
Confidence            66666666655443444454443 33455555543

>TIGR00901 2A0125 AmpG-related permease

Probab=90.02  E-value=4.7  Score=33.79  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         117 LVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       117 ~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      +......++.++..+........+.++..++|||..+..+.......|..+|..++..+
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555566778889999999999999889999999888877543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=89.91  E-value=4.3  Score=34.61  Aligned_cols=108  Identities=16%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++-.+|....++. +.-++ ++.+ .+.  -+++.-..+++...+.      ..+-+..++..++.|+..|-.
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~-~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~~~~  144 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGR-KKSL-LII--ALLFVIGAILMGLAAF------ALSVEMLIVGRVLLGIGVGIA  144 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhh-HHHH-HHH--HHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHH
Confidence            46778888888888887753 22222 2333 222  2233322233322111      112256677888899999888


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......+..+..++++|..+..+.......|..+|..++
T Consensus       145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            888888888888999999998888888889998888877

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=89.59  E-value=4.5  Score=34.93  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....|.++..+|..+..+. +.-++| +.+....+.-.+..-++.+-...        -.+-+...+.-++.|+..|-..
T Consensus        53 ~~~~~~~~~~i~~~~~g~l~dr~g~k-~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~i~G~g~~~~~  123 (402)
T TIGR00897        53 AFTLYGIAAAISAWISGVVAEIIGPL-KTMMIGLLLWCVGHAAFIVFGLG--------HANYPLILLFYGIRGLGYPLFA  123 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHhcc--------CccHHHHHHHHHHHHcchHHHH
Confidence            5678888888888877653 222233 33322222222211111111110        0122333445555666655544


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL-AGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl-~~Gs~~s  172 (179)
                      .......++..+++||..+..+.....+.|. ..|..++
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~  162 (402)
T TIGR00897       124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS  162 (402)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556677788899888888777777776 3565543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00889 2A0110 nucleoside transporter

Probab=89.32  E-value=4.5  Score=35.50  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=61.5

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      ....+..+++.+|+....+. +..+ +++.+....++-.+...++  ....+ .     ..+.+..++..++.|++.|-.
T Consensus       255 ~~~~~~~i~~i~~~~~~g~l~dr~g-~r~~l~~~~~~~~v~~~l~--~~~~~-~-----~~~~~~l~l~~~l~g~~~~~~  325 (418)
T TIGR00889       255 IWMSLSQFSEIFFILTIPFFLKRFG-IKKVMLLSLVAWALRFGFF--AYGDP-E-----YFGYALLFLSMIVYGCAFDFF  325 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHH--HHcCc-c-----hhhHHHHHHHHHHHHHHHHHH
Confidence            35667778888888776643 2222 2233322222222211111  11111 0     012234556778889888887


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMV-LSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~-~~l~~Gl~~Gs~~s  172 (179)
                      ......+..+..++++|..+-.+.. ....+|..+|..++
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~  365 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS  365 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777788888888888877766664 45566777776554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=89.20  E-value=7  Score=32.69  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLAN  135 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~t  135 (179)
                      ....++++..+|+.+..+..-+..+++.+....+.-.+...++..... +.      ..+.+......++.|+.+|-...
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~  319 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-LG------LGSWAMIIGPMMFVGIGNSMISS  319 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-hc------cchHHHHHHHHHHHHHHHHHHHH
Confidence            466788999999998876422112223222222222222222222111 00      01223345556778888888888


Q ss_pred             hhhhcccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy1201         136 ITFICAAKQVDPHEQEV-ASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       136 l~m~~ap~~v~~~~~e~-aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ..+.+..+..+ +++.. .|.........|...|..++
T Consensus       320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887776654 34433 33334444445555555554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=88.91  E-value=4.2  Score=40.17  Aligned_cols=61  Identities=16%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201         114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF  174 (179)
Q Consensus       114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~  174 (179)
                      ++-+..++..++.|+.++......+...|+.++++++..|-.++....++|..+|..++=.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~  166 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL  166 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4557778889999999999999999999999999999999888888888888888776644

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=88.57  E-value=10  Score=32.29  Aligned_cols=103  Identities=13%  Similarity=0.084  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|....++. +.-+++ +.+..   ..++.....+++...         ++-+...+..++.|+..|...
T Consensus        48 ~~~~~~~~~~~~~~~~G~l~Dr~grr-~~~~~---~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~~~~  114 (394)
T PRK11652         48 VMAAYLLTYGLSQLFYGPLSDRVGRR-PVILV---GMSIFILGTLVALFA---------HSLTVLIAASAIQGLGTGVGG  114 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCCh-HHHHH---HHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHhhhhHHH
Confidence            4567778887777766543 222232 33322   233333333333221         234555666777888888776


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      ..+....++..+++++..+..........|..+|..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  151 (394)
T PRK11652        115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI  151 (394)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666677777666555555555555544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=88.52  E-value=5.8  Score=34.17  Aligned_cols=55  Identities=18%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      ..+..++.++.+.......-.+.++..+++||..++.+.......|..+|+.++.
T Consensus        97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~  151 (402)
T PRK11902         97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL  151 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444455565555555566667888889999999999988887888877776553

>PRK03545 putative arabinose transporter; Provisional

Probab=88.51  E-value=9.5  Score=32.58  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      |-+...+.-++.|+.+|-..+....+.++..++|||..+-.+.......|..+|..++-
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~  154 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR  154 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            44566666778899998887777777888888888888877777777777777766553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=88.03  E-value=6.9  Score=37.72  Aligned_cols=105  Identities=14%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      +...+.+|-.+|..+.++. ..-+ +++.+....   +++....+++..         -++-+..++.-++.|+..|-..
T Consensus       207 l~s~~~lG~iiG~li~G~LsDR~G-RR~~lii~l---il~~i~~ll~af---------a~s~~~llv~R~l~G~g~g~~~  273 (742)
T TIGR01299       207 LGLIVYLGMMVGAFFWGGLADKLG-RKQCLLICL---SVNGFFAFFSSF---------VQGYGFFLFCRLLSGFGIGGAI  273 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHH---HHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888887764 2212 223332222   222222222221         1344666777888899888888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      ..+..+..+..++++|..+-.++..+..+|..+|..++.
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888777777777777777776553

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=87.46  E-value=1.9  Score=35.89  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=54.2

Q ss_pred             HHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHH-HHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVF-MPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~f-iPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|+.+..+..-+..+++.+......-.+. .+++.... .+        .+-+...+..++.++..|-..
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~g~~~~~~~  330 (394)
T TIGR00883       260 VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DS--------GSFTLFFFLVLGLALIGGMYT  330 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cC--------CchHHHHHHHHHHHHHHHHHh
Confidence            466788889988887765311111223232222222211 12221111 00        122445566777888888888


Q ss_pred             hhhhhcccCCCChhhHHHHHHH-HHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAM-MVLSLGVGLAGG  168 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~-m~~~l~~Gl~~G  168 (179)
                      +......++..++++|..+-.+ ..+.-..|-.+|
T Consensus       331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~  365 (394)
T TIGR00883       331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA  365 (394)
T ss_pred             hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence            8888888888887777654333 333333444333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=87.40  E-value=11  Score=32.97  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=61.1

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....|.++-.+|....++. +.-+++ +.+ ..  .-+++....++|...         ++-+...+.-++.|+..|...
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l-~~--~~~~~~~~~~~~~~a---------~~~~~l~~~r~l~Gi~~~~~~  122 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLSDRIGRR-PVL-IT--GALIFTLACAATLFT---------TSMTQFLIARFIQGTSICFIA  122 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHcCch-HHH-HH--HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888876642 222233 333 22  234444444444421         344566777788899888877


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +......++..+++|+.++-.+.......|-.+|..++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403        123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666667777776665554455555555555544

>PRK10504 putative transporter; Provisional

Probab=87.40  E-value=5.6  Score=34.89  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=41.7

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.+..++..++.|+..|-..........+..+++++..+-.+....-+.|-.+|..++
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  154 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG  154 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4456677788899999888777777777777888877766666666666666665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=87.17  E-value=14  Score=32.55  Aligned_cols=104  Identities=12%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|....++. ..-+ +++.+..   .-++.....+++..         -+|-+...+..++.|+..|-..
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~---~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~  126 (496)
T PRK03893         60 LISAAFISRWFGGLLLGAMGDRYG-RRLAMVI---SIVLFSVGTLACGF---------APGYWTLFIARLVIGMGMAGEY  126 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHH---HHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777666543 2212 2233322   22333222222221         1234556677778888887766


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+..+..++++|..+-.+......+|-.+|..++
T Consensus       127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893        127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777888888888776676666667766666544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=87.07  E-value=9.2  Score=35.23  Aligned_cols=106  Identities=20%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhhhhhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYLQWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      .+...+.+|-.+|-.+..+.+....+.+.+....   +++-...+.-.         +.++-|..++.+++.|.+.....
T Consensus       258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~---~~~a~~~~~la---------l~~~~~~~~~~l~l~G~~~~~~~  325 (524)
T PF05977_consen  258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS---LLFALALLLLA---------LSPSFWLALIALFLAGAAWIIAN  325 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH---HHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999998775433222223222111   12211111111         12455677788888888888777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +......=+.++++.|.++-.+.......|..+|+++.
T Consensus       326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            76666666667888888887777777777777777654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00899 2A0120 sugar efflux transporter

Probab=86.52  E-value=9.8  Score=31.72  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=33.9

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.+...+...+.|+..|......+.+..+..++ ++..+-.+.......|..+|..++
T Consensus       287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~  343 (375)
T TIGR00899       287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVG  343 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566677888887776666666555443 344444444555556776666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=85.99  E-value=11  Score=32.15  Aligned_cols=58  Identities=14%  Similarity=-0.030  Sum_probs=36.4

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      ++.+..++..++.|++.|......+.+..+..++|+....|....+....|..+|..+
T Consensus       291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i  348 (382)
T PRK11128        291 TALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVL  348 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667788999999998888888777666433433333433334444565555543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=85.79  E-value=8.9  Score=32.17  Aligned_cols=103  Identities=9%  Similarity=0.082  Sum_probs=49.5

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHH-HHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISR-FVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R-~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      ....+.++..+|+.+..+. +.. .+++.+....+.= ...++++..   .         ++.+...+..++.++..+-.
T Consensus       279 ~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~  345 (405)
T TIGR00891       279 IVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI---G---------ANVAVLGLGLFFQQMLVQGI  345 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh---C---------CchHHHHHHHHHHHHHHccc
Confidence            4567888999999887763 221 1223222221111 111222111   1         12233333334444433333


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      .+....+-++..++++|..+-.+.......|..+|..+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~  383 (405)
T TIGR00891       346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII  383 (405)
T ss_pred             hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH
Confidence            34444455666677777766555555556666666544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=84.50  E-value=8.6  Score=32.79  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|.....+. +..++ ++.+...   =++.....+++..         .+|-+...+..++.|++.|-.
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~dr~g~-k~~~~~~---~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~  111 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVIKRIGF-NRSYYLA---SLIFAAGCAGLGL---------MVGFWSWLAWRFVAGIGCAMI  111 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHHHH
Confidence            46788899999988877653 22112 2222111   1222333333332         234455666777888888765


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ........-+..++++|..+-.......+.|..+|..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633        112 WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333333445666776665565566677777776655

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=84.26  E-value=18  Score=31.74  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=51.0

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|....++. +.-+++ +++....   ++.....+++...+..     -.+-+..++..++.|+..|...
T Consensus        68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k-~~l~~~~---~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         68 ALSGISIAYGFSKFIMGSVSDRSNPR-VFLPAGL---ILAAAVMLFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCc-hhHHHHH---HHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHHHHHhccc
Confidence            5677888888888777653 222233 3332222   2222222222221100     0133444555667787777554


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGL  165 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl  165 (179)
                      ........+..++++|..+-.+.....+.|.
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence            4333444555677777776666555555543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=84.08  E-value=6.2  Score=36.36  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHH
Q psy1201          80 NGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVL  159 (179)
Q Consensus        80 ~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~  159 (179)
                      +++.+...-+.|.+..-...+.....       ..+-|..+++.++.|..+......-...-|+.|+++|-+.|-.+++.
T Consensus        74 rrrili~~~~~~~~~~~~L~~l~~~~-------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~  146 (524)
T PF05977_consen   74 RRRILILSQLLRALVALLLAVLAFFG-------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSI  146 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence            34555556666765543333333221       13557778889999999999999999999999999998888888888


Q ss_pred             HHHHHHHHH
Q psy1201         160 SLGVGLAGG  168 (179)
Q Consensus       160 ~l~~Gl~~G  168 (179)
                      ..+..-.+|
T Consensus       147 ~~niar~iG  155 (524)
T PF05977_consen  147 SFNIARIIG  155 (524)
T ss_pred             HHHHHHhcc
Confidence            777655544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11663 regulatory protein UhpC; Provisional

Probab=83.87  E-value=19  Score=31.44  Aligned_cols=103  Identities=13%  Similarity=0.062  Sum_probs=57.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|+...++. ..-+++ +.+ ...  =++.....+++..         .++-+...+.-++.|+..|-..
T Consensus        63 ~~~~~~~~~~~~~~~~G~l~dr~g~r-~~~-~~~--~~~~~~~~~~~~~---------~~~~~~l~~~~~l~g~~~g~~~  129 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIVSDRSNAR-YFM-GIG--LIATGIINILFGF---------SSSLWAFALLWVLNAFFQGWGW  129 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhcCCc-hhH-HHH--HHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHccc
Confidence            4567788887777776653 121222 222 221  2222222222221         1233444455566777777655


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      .....+..+..+++||..+-.+.......|..+|..+
T Consensus       130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~  166 (434)
T PRK11663        130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV  166 (434)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666777788888888777777777777776553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=83.40  E-value=17  Score=31.11  Aligned_cols=57  Identities=14%  Similarity=-0.004  Sum_probs=37.2

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.++..+.+.++|+..|...+..+... ...+++++..+..++++.-..|..+|+.++
T Consensus       308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  364 (406)
T PRK15402        308 AYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELS  364 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888888887765554433 233456777777777777777777776554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=83.36  E-value=12  Score=36.90  Aligned_cols=60  Identities=8%  Similarity=-0.017  Sum_probs=46.0

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      .+.|..++..+++|+..|..........-+.++++++..+..+.++....|..+|+.+.-
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA  391 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence            566777788888999888887776666667778888888877777777777777776543

>PRK10504 putative transporter; Provisional

Probab=83.29  E-value=15  Score=32.24  Aligned_cols=54  Identities=9%  Similarity=0.175  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         119 YATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       119 ~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ..+..++.|+..|-..+......++.++++++..+..+.++.-.+|..+|..++
T Consensus       356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            344556667777777777677777888888888888888888888887776554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=82.90  E-value=29  Score=29.76  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             HHHHHHHHhhhhhhhhhhcc--cCC---CCChhHHHHHH-HHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL--QWP---RNNGWWVLLFS-ISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGL  128 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~--~~~---~~~~~~l~~~~-~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~  128 (179)
                      .......+.|.++.-+.++.  +.+   .+++.++.... ..-+.++.    +...|..  +. ...-++..+..++++.
T Consensus        39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~----~~~~~~~--~~-~~~~~~~~~~~~~~~~  111 (437)
T TIGR00792        39 TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL----LFTTPDF--SA-TGKLVYAYITYILLGL  111 (437)
T ss_pred             HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH----HHhCCCC--Cc-chHHHHHHHHHHHHHH
Confidence            36778888898888776653  111   12233443222 22222222    2222211  00 0122455555566676


Q ss_pred             hhhhhhhhhhhcccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         129 SNGYLANITFICAAKQV-DPHEQEVASAMMVLSLGVGLAGGSGL  171 (179)
Q Consensus       129 tnGyl~tl~m~~ap~~v-~~~~~e~aG~~m~~~l~~Gl~~Gs~~  171 (179)
                      ..+....-.....++.. +++||..+........+.|..+++.+
T Consensus       112 ~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~  155 (437)
T TIGR00792       112 FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVI  155 (437)
T ss_pred             HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665555555667765 57888887777666666665554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=82.87  E-value=22  Score=30.20  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         121 TIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       121 ~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ....+++...+=.....+...-+..+++++..+......+.++|-.+|..++
T Consensus       290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~  341 (381)
T PRK03633        290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT  341 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666665544556666666777776666665555566677777776544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=82.65  E-value=16  Score=35.25  Aligned_cols=103  Identities=9%  Similarity=-0.030  Sum_probs=60.1

Q ss_pred             HHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      ...+.+++.++|..++.+.  ++.  +++.+....++=.  +-.+++. .         .++.+..++..+++++..+-.
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~G--Rr~~l~~~~~lsa--i~~ll~~-~---------~~s~~~ll~~~~l~g~~~~~~  665 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKIG--RLRMLAGSMVLSC--ISCFFLS-F---------GNSESAMIALLCLFGGLSIAA  665 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHH--HHHHHHH-H---------HccHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999874  332  2233322221111  1111111 1         123344444455556544434


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .+....+.++..+.++|..+-.+....-.+|..+|..++
T Consensus       666 ~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~  704 (742)
T TIGR01299       666 WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF  704 (742)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667788888999998887777777777777777664

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00899 2A0120 sugar efflux transporter

Probab=81.75  E-value=18  Score=30.16  Aligned_cols=18  Identities=0%  Similarity=-0.147  Sum_probs=11.7

Q ss_pred             HHHHHHHhhhhhhhhhhc
Q psy1201          56 AFLVFSVCDYLGRFIAGY   73 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~   73 (179)
                      ....+.+++.++......
T Consensus        38 ~~~~~~~~~~~~~~~~g~   55 (375)
T TIGR00899        38 FYTGSAIVGIAVSQLLAT   55 (375)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456777777777665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=81.67  E-value=25  Score=30.67  Aligned_cols=114  Identities=9%  Similarity=0.023  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccch----hHHHHHHHHHHhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSD----LVYATIVLLMGLS  129 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d----~~~~~~~~lfg~t  129 (179)
                      .....+++|=.+|-.+.++. ..-+ +++.+....   +++.-..+.+....-.. +....++    +..++.=++.|+.
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~G-rr~~~~~~~---~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~~  133 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFG-RRDSLKIAA---VLFFISALGSAWPEFGF-TSIGPDNTGYVPEFVIYRIIGGIG  133 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHH---HHHHHHHHHHHhhcccc-ccccccchhHHHHHHHHHHHHhhh
Confidence            36788888888888877653 2211 223332222   12222222333211000 0001112    2334556788999


Q ss_pred             hhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         130 NGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       130 nGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      .|-....++.+..+..+++||..+..+.......|..++..++.
T Consensus       134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~  177 (479)
T PRK10077        134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY  177 (479)
T ss_pred             HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888888777766544

>TIGR00897 2A0118 polyol permease family

Probab=81.36  E-value=30  Score=29.75  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHH-HHHHHHHH-HHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLL-FSISRFVF-MPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY  132 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~-~~~~R~~f-iPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy  132 (179)
                      ....+.++..+|+....+. +..+++ +.+.. ..++-.+. +.+...-. .       .-++.+...+..+++|+..|-
T Consensus       262 ~~~~~~~~~~ig~~~~g~l~dr~~~~-~~~~~~~~l~~~~~~~~l~~~~~-~-------~~~~~~~~~~~~~~~G~~~~~  332 (402)
T TIGR00897       262 IWGTFFFTNIVFNVIFGIVGDKLGWM-NTVRWFGGVGCGIFTLALYYIPQ-H-------FGHSFAVALIIAIALGIFLAG  332 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHH-c-------cCCcHHHHHHHHHHHHHHHHH
Confidence            4456788999999987764 221122 22211 11112111 11111110 0       013455666677778877775


Q ss_pred             hhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         133 LANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       133 l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ...... ..+ ..++++|..+-.+.......|..+|..++
T Consensus       333 ~~~~~~-~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~  370 (402)
T TIGR00897       333 YVPLAA-VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA  370 (402)
T ss_pred             HHHHHH-HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            544322 222 34556777777777777777776666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=81.32  E-value=25  Score=30.75  Aligned_cols=60  Identities=7%  Similarity=-0.064  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLF  174 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~  174 (179)
                      +-+...+..++.|+.+|.+.+....+..+..++++++.+-.+.....++|..+|..++-.
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~  152 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ  152 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777888999999988877777777777778877777777778888888766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=81.19  E-value=22  Score=30.70  Aligned_cols=53  Identities=15%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         120 ATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       120 ~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .+.-++.|+..|......+.+.|+.+++|||..+-.++......|..+|..++
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg  144 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG  144 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456789999999999999999999999999888888888887777776654

>PRK09669 putative symporter YagG; Provisional

Probab=80.33  E-value=33  Score=29.98  Aligned_cols=58  Identities=14%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHH----HHH---HHHHHHHHHHHHHHHHHH
Q psy1201         115 SDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQE----VAS---AMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       115 ~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e----~aG---~~m~~~l~~Gl~~Gs~~s  172 (179)
                      +.+...+..++.|+..|-...+.....++.+|.+|.+    ..|   .+.+++..+|..+|..++
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566777889998888777777777777644432    223   355566678888876554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=80.19  E-value=19  Score=32.04  Aligned_cols=18  Identities=6%  Similarity=0.117  Sum_probs=13.7

Q ss_pred             HHHHHHHhhhhhhhhhhc
Q psy1201          56 AFLVFSVCDYLGRFIAGY   73 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~   73 (179)
                      .....+++..+|+.+..+
T Consensus       291 ~~~~~~~~~~~~~~~~g~  308 (490)
T PRK10642        291 IIIAIMIGMLFVQPVMGL  308 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456778899988887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	95.27
2xut_A	524	Proton/peptide symporter family protein; transport	94.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	94.35
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	93.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	92.65
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	89.41
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	81.74
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	80.94

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=95.27  E-value=0.12  Score=42.85  Aligned_cols=109  Identities=17%  Similarity=0.045  Sum_probs=73.6

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|..+.++. ..- .+++.+....+...+..   +++...+     ..-++-+..++..++.|+..|-.
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~---~~~~~~~-----~~~~~~~~l~~~~~l~G~~~~~~  136 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVM---LFMGFVP-----WATSSIAVMFVLLFLCGWFQGMG  136 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH---HHHHHCH-----HHHSSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHH---HHHHhhh-----hccccHHHHHHHHHHHHHHhhhc
Confidence            35778999999988887753 222 22333333333332222   2222100     00124456777888999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ......+.++..++++|..+-.+......+|..+|..++
T Consensus       137 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888888888888887776

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.78  E-value=0.15  Score=43.71  Aligned_cols=106  Identities=17%  Similarity=0.126  Sum_probs=67.3

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCC-CCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWP-RNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY  132 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~-~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy  132 (179)
                      .....+.++..+|....++. +.- ++ ++.+....+...+.   .+++...+        .+-+..++..++.|+..|-
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~-r~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~l~g~~~~~  125 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIADRFFGK-YNTILWLSLIYCVG---HAFLAIFE--------HSVQGFYTGLFLIALGSGG  125 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTTSSCS-HHHHHHHHHHHHHH---HHHHHHTS--------SCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH---HHHHHHhc--------ccHHHHHHHHHHHHHhccc
Confidence            36778999999998887763 222 23 23333333222222   22222111        1446667778889999999


Q ss_pred             hhhhhhhcccCCCChhhHHHHHHH---HHHHHHHHHHHHHHHH
Q psy1201         133 LANITFICAAKQVDPHEQEVASAM---MVLSLGVGLAGGSGLG  172 (179)
Q Consensus       133 l~tl~m~~ap~~v~~~~~e~aG~~---m~~~l~~Gl~~Gs~~s  172 (179)
                      .......+..+..++++|..+...   .....+.|..+|..++
T Consensus       126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~  168 (524)
T 2xut_A          126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM  168 (524)
T ss_dssp             THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888998888888766666   5566667777666543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=94.35  E-value=0.28  Score=40.57  Aligned_cols=109  Identities=13%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY  132 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy  132 (179)
                      .....+.++..+|+.+..+.  ++.+.+++.+......-. .+-+.+ ....+.       .+.+...+..+++|+..|.
T Consensus       292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-------~~~~~~~~~~~~~g~~~~~  362 (451)
T 1pw4_A          292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIV-YWMNPA-------GNPTVDMICMIVIGFLIYG  362 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHH-TTSCCT-------TCHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHH-HHHhcc-------cCHHHHHHHHHHHHHHHhc
Confidence            36778899999999988764  221122232222211111 011221 211111       2556677788888988888


Q ss_pred             hhhhhhhcccCCCChhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1201         133 LANITFICAAKQVDPHEQEVASAMMVLSLGV-GLAGGSGLG  172 (179)
Q Consensus       133 l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~-Gl~~Gs~~s  172 (179)
                      ..+....+..+..++++|..+-.+....... |..+|..+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~  403 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  403 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8877778888888888888888888777777 877776553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=93.91  E-value=0.42  Score=39.47  Aligned_cols=111  Identities=9%  Similarity=-0.069  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..+|....++. +.-+ +++.+....+.-.+..-+......         -++-+..++..++.|+..|-.
T Consensus        65 ~~~~~~~~~~~i~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~  134 (438)
T 3o7q_A           65 LIQSAFYFGYFIIPIPAGILMKKLS-YKAGIITGLFLYALGAALFWPAAE---------IMNYTLFLVGLFIIAAGLGCL  134 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHhccc---------cccHHHHHHHHHHHHhhHHHh
Confidence            36788999999988887753 2222 223332222222211111111021         235567788889999999999


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      .+....+..+..++|+|..+-.+......+|..+|..++-.+
T Consensus       135 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888888888888776443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=92.65  E-value=0.11  Score=42.26  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYL  133 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl  133 (179)
                      .....+.++..++.....+. +.-++| +.+....+...+...+...            .++-+...+..++.|+..|..
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~l~g~~~~~~  105 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPISDRVGRR-PVILVGMSIFMLATLVAVT------------TSSLTVLIAASAMQGMGTGVG  105 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTTSCCC-CCCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHHHHhh
Confidence            36788999999998887753 222233 2332333333333222211            134566777788889999988


Q ss_pred             hhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         134 ANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGL  173 (179)
Q Consensus       134 ~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~  173 (179)
                      .+....+.++..++|||..+..+.......|..+|..++-
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (375)
T 2gfp_A          106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG  145 (375)
T ss_dssp             HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8888888888777778887777777777788777776653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=89.41  E-value=1.7  Score=36.49  Aligned_cols=105  Identities=12%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcc-cC-CCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL-QW-PRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY  132 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~-~~-~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy  132 (179)
                      .....+.++-.+|..+.++. .. -+ +++.+...   -++.....+++...         +|.+..++..++.|+..|-
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~~g-~r~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~~~~~  124 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVADRIIG-ARPAVFWG---GVLIMLGHIVLALP---------FGASALFGSIILIIIGTGF  124 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHH---HHHHHHHHHHHHSC---------CSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHH---HHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHh
Confidence            36788999999999888764 22 22 22322222   23333333334321         3556777888899999998


Q ss_pred             hhhhhhhcccCCCChhh--HHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         133 LANITFICAAKQVDPHE--QEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       133 l~tl~m~~ap~~v~~~~--~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      ..+....+..+..++++  |..+-.......++|..+|..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A          125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            88888888888777776  55555555566777777766554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=81.74  E-value=21  Score=29.56  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCccc-cchhHHHHHHHH
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRT--------HLPVLI-TSDLVYATIVLL  125 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~--------~~p~~~-~~d~~~~~~~~l  125 (179)
                      ....|.+|-.+|-.+.++. ..-  .||..+.++  =+++.-.-++|...+..        ..+... +|-+..++.=++
T Consensus        60 ~~s~~~~G~~iG~~~~G~laDr~--GRk~~l~~~--~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l  135 (491)
T 4gc0_A           60 CVASALIGCIIGGALGGYCSNRF--GRRDSLKIA--AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII  135 (491)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHT--CHHHHHHHH--HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHH--HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence            4567888888888777653 222  223332222  22333333445432211        111222 344566777889


Q ss_pred             HHhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1201         126 MGLSNGYLANITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLGLFK  175 (179)
Q Consensus       126 fg~tnGyl~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s~~~  175 (179)
                      .|+..|-..+.+..+.-|..++++|...+.+...+...|...+...+...
T Consensus       136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            99999999999999999999999999999999999999998888877654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=80.94  E-value=13  Score=30.23  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++..+|+.+..+. +.- .+++.+....   ++.....++...          .++....+..+++++..|-..
T Consensus       300 ~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~  365 (438)
T 3o7q_A          300 YLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYA---LIAMALCLISAF----------AGGHVGLIALTLCSAFMSIQY  365 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHH---HHHHHHHHHHHH----------CCHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHH---HHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHH
Confidence            4556777788888777653 221 2223222222   112222222221          122334455577788887777


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSG  170 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~  170 (179)
                      .....+..+..+++ +..+..++.. -.+|-.+|..
T Consensus       366 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~  399 (438)
T 3o7q_A          366 PTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTP  399 (438)
T ss_dssp             HHHHHHHHSSCGGG-HHHHHHHHHH-TTHHHHHHHH
T ss_pred             HHHHHHHHhhcccc-ccchhhHHHH-HHHHHHHHHH
Confidence            77777777877766 5544444443 3344444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.65
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	93.28
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	90.45

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.23  Score=38.70  Aligned_cols=108  Identities=17%  Similarity=0.031  Sum_probs=69.4

Q ss_pred             HHHHHHHhhhhhhhhhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhhhh
Q psy1201          56 AFLVFSVCDYLGRFIAGYL-QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGYLA  134 (179)
Q Consensus        56 ~~~~fnlgD~iGR~~~~~~-~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGyl~  134 (179)
                      ....+.++-.+|..+.++. +.-+ +++.+....+.-.+..   +++...     |...++-+..++.-++.|+..|-..
T Consensus        64 ~~s~~~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~  134 (447)
T d1pw4a_          64 ALSGISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVM---LFMGFV-----PWATSSIAVMFVLLFLCGWFQGMGW  134 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH---HHHHHC-----HHHHSSSSHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHH---hhcccc-----chhhhhHHHHHHHHHHHHHhhhhhh
Confidence            5778888888888877653 2222 2232222222222211   222211     1112355677888888899988888


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1201         135 NITFICAAKQVDPHEQEVASAMMVLSLGVGLAGGSGLG  172 (179)
Q Consensus       135 tl~m~~ap~~v~~~~~e~aG~~m~~~l~~Gl~~Gs~~s  172 (179)
                      .....+..+..+++||..+-.+...+...|..+|..++
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence            88888888889999999988888888888877776544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.49  Score=36.71  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhhhhhhcc--cCCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhHHHHHHHHHHhhhhh
Q psy1201          55 IAFLVFSVCDYLGRFIAGYL--QWPRNNGWWVLLFSISRFVFMPLVLLCNIQPRTHLPVLITSDLVYATIVLLMGLSNGY  132 (179)
Q Consensus        55 i~~~~fnlgD~iGR~~~~~~--~~~~~~~~~l~~~~~~R~~fiPlf~lc~~~~~~~~p~~~~~d~~~~~~~~lfg~tnGy  132 (179)
                      .....+.++..+|+.+..+.  +..++++. . .....-.+.....++....+       -.+.+...+.+++.|+..+-
T Consensus       289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         289 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-A-TGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-H-HHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTH
T ss_pred             hhhhcchhhhhhhhhhhhhhhhhccccccc-c-ccchhHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHHH
Confidence            35677788888888887653  22222211 1 11111222222222222211       23566777778888888777


Q ss_pred             hhhhhhhcccCCCChhhHHHHHHHHHHHHHH-HHHHHHH
Q psy1201         133 LANITFICAAKQVDPHEQEVASAMMVLSLGV-GLAGGSG  170 (179)
Q Consensus       133 l~tl~m~~ap~~v~~~~~e~aG~~m~~~l~~-Gl~~Gs~  170 (179)
                      .......+..+..++++|..+..+....-.. |..+|..
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777877777666555444333 4444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.38  Score=36.16  Aligned_cols=58  Identities=16%  Similarity=-0.002  Sum_probs=44.2

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhcccCCCChhhHHHHHH-HHHHHHHHHHHHHHHH
Q psy1201         114 TSDLVYATIVLLMGLSNGYLANITFICAAKQVDPHEQEVASA-MMVLSLGVGLAGGSGL  171 (179)
Q Consensus       114 ~~d~~~~~~~~lfg~tnGyl~tl~m~~ap~~v~~~~~e~aG~-~m~~~l~~Gl~~Gs~~  171 (179)
                      ++.+..++..++.|++.|-..+....+..+..++|+|..+-. .+++...+|..+|..+
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888899999999988888888888888888866544 4555666666666654